AlfalfaGEDB | Msa0091830

M. sativa cultivar zhongmu-4 / Msa0091830

KEGG: K12662
GO: GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904
PFAM: PF08799.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091830	sp\|O22212\|PRP4L_ARATH	63.617	470	159	6	11	473	89	553	0.0	618

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091830	A0A1S2Z7D8	89.172	471	50	1	3	473	103	572	0.0	868

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001000	Msa0091830	0.814150	1.783397e-51	-8.615850e-47
Msa0091830	Msa0164360	0.804179	2.446022e-49	-8.615850e-47
Msa0091830	Msa0243470	0.802604	5.185772e-49	-8.615850e-47
Msa0091830	Msa0576600	0.800487	1.408270e-48	-8.615850e-47
Msa0091830	Msa0617830	0.808210	3.464235e-50	-8.615850e-47
Msa0091830	Msa0656270	0.803485	3.408795e-49	-8.615850e-47
Msa0091830	Msa0700070	0.813417	2.586645e-51	-8.615850e-47
Msa0091830	Msa0750380	0.805566	1.254748e-49	-8.615850e-47
Msa0091830	Msa0800350	0.816728	4.761095e-52	-8.615850e-47
Msa0091830	Msa0830720	0.802017	6.848130e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091830	MtrunA17_Chr3g0093681	89.172	471	51	0	3	473	95	565	0.0	849
Msa0091830	MtrunA17_Chr1g0172501	88.960	471	52	0	3	473	95	565	0.0	847
Msa0091830	MtrunA17_Chr5g0405851	89.610	462	33	1	27	473	1	462	0.0	789
Msa0091830	MtrunA17_Chr1g0185501	33.992	253	152	6	217	460	22	268	3.30e-35	133
Msa0091830	MtrunA17_Chr1g0185501	27.273	286	200	6	182	460	28	312	6.32e-30	119
Msa0091830	MtrunA17_Chr4g0067151	32.171	258	159	6	217	460	22	277	3.98e-34	130
Msa0091830	MtrunA17_Chr4g0067151	28.763	299	197	6	178	461	25	322	1.08e-33	129
Msa0091830	MtrunA17_Chr4g0067151	29.032	217	143	3	255	461	18	233	4.64e-26	108
Msa0091830	MtrunA17_Chr3g0136971	31.356	236	144	3	187	405	426	660	3.98e-29	120
Msa0091830	MtrunA17_Chr3g0136971	28.986	207	144	3	213	418	410	614	4.82e-27	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091830	AT2G41500.1	63.617	470	159	6	11	473	89	553	0.0	618
Msa0091830	AT2G41500.2	63.617	470	159	6	11	473	89	553	0.0	618
Msa0091830	AT2G05720.1	36.585	328	145	4	119	444	2	268	1.73e-60	199
Msa0091830	AT2G05720.1	26.108	203	127	7	262	461	61	243	2.62e-12	67.8
Msa0091830	AT3G49660.1	31.449	283	184	5	188	461	32	313	2.09e-36	137
Msa0091830	AT3G49660.1	30.315	254	165	6	217	460	19	270	1.92e-31	123
Msa0091830	AT3G49660.1	30.488	164	108	2	305	463	23	185	2.16e-19	89.4
Msa0091830	AT3G49660.1	23.529	255	140	6	180	380	64	317	3.19e-16	80.1
Msa0091830	AT4G02730.1	31.102	254	167	6	213	460	34	285	2.19e-32	126
Msa0091830	AT4G02730.1	25.424	295	202	6	178	460	41	329	1.42e-25	107

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Find 139 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATGAATCTGATTCC+TGG	0.408504	1_2:+74002257	None:intergenic
AAAGCTAATGAAAGCTCTTG+AGG	0.540719	1_2:-74005187	Msa0091830:CDS
AACATCCATAGTATGCTCAC+TGG	0.592453	1_2:+74002313	None:intergenic
AACCTCAGGTTTGGTCAGGC+CGG	0.465885	1_2:-74003908	Msa0091830:intron
AACTTCTACTCCAAAAGACG+AGG	0.686425	1_2:-74005151	Msa0091830:CDS
AAGATAACACTTGTCGCATT+TGG	0.293252	1_2:-74004155	Msa0091830:CDS
AAGATGCTCTGGCTCGTGTA+TGG	0.388969	1_2:-74004380	Msa0091830:CDS
AAGCATGTGAAGACACTATC+AGG	0.282928	1_2:-74003879	Msa0091830:CDS
AATCTCGAATTCAGTGAAAT+CGG	0.380624	1_2:-74004937	Msa0091830:CDS
AATGATATACGATTAGTGCC+AGG	0.551251	1_2:-74002275	Msa0091830:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAAATAGAGAAAGGAAG+CGG	+	chr1_2:74002126-74002145	None:intergenic	30.0%
GCAGAAACAAAAATAGAGAA+AGG	+	chr1_2:74002132-74002151	None:intergenic	30.0%
TTTATATGCATGCGTATAAC+TGG	-	chr1_2:74002352-74002371	Msa0091830:CDS	30.0%
AGGAATCATGGAAGTTAATA+AGG	-	chr1_2:74002452-74002471	Msa0091830:intron	30.0%
GGAATCATGGAAGTTAATAA+GGG	-	chr1_2:74002453-74002472	Msa0091830:intron	30.0%
AATCTCGAATTCAGTGAAAT+CGG	-	chr1_2:74002969-74002988	Msa0091830:intron	30.0%
AAAAAGTTTCTACCTTCAAG+GGG	-	chr1_2:74003187-74003206	Msa0091830:intron	30.0%
CTAGGTAGAAAGAAATAGAA+AGG	+	chr1_2:74003905-74003924	None:intergenic	30.0%
AAATTATACATTTGTGGCTC+TGG	-	chr1_2:74004117-74004136	Msa0091830:CDS	30.0%
AATTCATCATGTACAAGTGA+AGG	+	chr1_2:74004224-74004243	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	74002032	74005896	74002032	ID=Msa0091830;Name=Msa0091830
chr1_2	mRNA	74002032	74005896	74002032	ID=Msa0091830-mRNA-1;Parent=Msa0091830;Name=Msa0091830-mRNA-1;_AED=0.12;_eAED=0.12;_QI=55\|1\|1\|1\|0.8\|0.66\|6\|275\|473
chr1_2	exon	74002032	74002398	74002032	ID=Msa0091830-mRNA-1:exon:26124;Parent=Msa0091830-mRNA-1
chr1_2	exon	74003841	74003922	74003841	ID=Msa0091830-mRNA-1:exon:26123;Parent=Msa0091830-mRNA-1
chr1_2	exon	74004032	74004229	74004032	ID=Msa0091830-mRNA-1:exon:26122;Parent=Msa0091830-mRNA-1
chr1_2	exon	74004329	74004785	74004329	ID=Msa0091830-mRNA-1:exon:26121;Parent=Msa0091830-mRNA-1
chr1_2	exon	74004877	74005474	74004877	ID=Msa0091830-mRNA-1:exon:26120;Parent=Msa0091830-mRNA-1
chr1_2	exon	74005847	74005896	74005847	ID=Msa0091830-mRNA-1:exon:26119;Parent=Msa0091830-mRNA-1
chr1_2	five_prime_UTR	74005847	74005896	74005847	ID=Msa0091830-mRNA-1:five_prime_utr;Parent=Msa0091830-mRNA-1
chr1_2	five_prime_UTR	74005470	74005474	74005470	ID=Msa0091830-mRNA-1:five_prime_utr;Parent=Msa0091830-mRNA-1
chr1_2	CDS	74004877	74005469	74004877	ID=Msa0091830-mRNA-1:cds;Parent=Msa0091830-mRNA-1
chr1_2	CDS	74004329	74004785	74004329	ID=Msa0091830-mRNA-1:cds;Parent=Msa0091830-mRNA-1
chr1_2	CDS	74004032	74004229	74004032	ID=Msa0091830-mRNA-1:cds;Parent=Msa0091830-mRNA-1
chr1_2	CDS	74003841	74003922	74003841	ID=Msa0091830-mRNA-1:cds;Parent=Msa0091830-mRNA-1
chr1_2	CDS	74002307	74002398	74002307	ID=Msa0091830-mRNA-1:cds;Parent=Msa0091830-mRNA-1
chr1_2	three_prime_UTR	74002032	74002306	74002032	ID=Msa0091830-mRNA-1:three_prime_utr;Parent=Msa0091830-mRNA-1

Gene Sequence

>Msa0091830

ATGGAAGTTAATAAGGGTACTGGAGAGTATGAGATATCAGAAGAGAGTAGACTGGCGAGGGAGCGACAGGAGAAAACGATGCAGGACCTCATGATGAGGAGGCGTGCTGCTGCTCTTGCTGTTCCCACAAATGACATGGCAGTGAGGGCCCATCTTCGCCATCTTGGTGAGCCAATTACCCTCTTTAGGGAGAGGGAGATGGAGAGACGAGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCCGATGGACAGCTGGAAAAGCTAATGAAAGCTCTTGAGGATGAAGAGGCCGCAACTTCTACTCCAAAAGACGAGGCTGAGGATGATCTGCAGTATCCTTTTCACAATGAAGGCTCAAATTCTCTCCTCAATGCAAGGATTGATATTGCTAAATATTCTTTAGTAAGGGCTGCATTGCGTATCCAACGTGCCCGGAGAAGAAGAGATGATCCGGATGAAGATGTGGATGCAGAGATGGATTGGACATTGAAGCAGGCAGCAAATTTGAATCTCGAATTCAGTGAAATCGGGGATGTTCAGCGACTTACTGGTTGCTCGTTCTCCCGTGATGGAAAAAGGGTTGCTTCCTGTTCTCTAACTGGAGCTACCAAGTTGTGGAGCATGCCTGATGTAAAAAAAGTTTCTACCTTCAAGGGGCACACCGAGCGTGCTACTGATGTTGCATATTCTCCGGTGCACAATAATCATTTAGCAACTGCCTCTGCTGACCGGACAGCAAACTATTGGAATGATCAAGGATCTCTTTTGAGAACATTTAAGGGTCATCGTGAACCTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACTTGGGCACTGCTAGCGATGACAAGACATGGAGGTTATGGGACGTTGAAACAGGAGAGGAGTTACTTCTTCAAGAAGGTCATAGTAGAAGTGTATTTGGTTTGGCTTTTCATCATGATGGATCGTTAGCAGCATCTTGTGGAAAAGATGCTCTGGCTCGTGTATGGGACCTTCGAACTGATAGAAGTGTTCTAGCACTAGAAGGTCATGTCAAACCGATTCGTGGCATCAGTTTTTCTCCTAATGGATATCATTTAGCCACCGGTGGTGAAGATAACACTTGTCGCATTTGGGATTTGAGAAAAAAGAAATCCTTATACACCATTCCCGCTCACTCTAAATTAATATCGCAAGTCAAATTTGAGCCACAGGAGGGTTTCTTTTTGGTAACTTCCTCATTTGACATGACAGCCAAGGTTTGGTCAGGCCGGGACTTTAAGCATGTGAAGACACTATCAGGGCATGAAGATAGAGTTAGTTCCGTGGATGTTCTTGGAGATGGTGGGTATATTGTTACAGTCTCCCATGATCGCACGATAAAGCTGTGGTCCAACGGTTTTACCAGTGAGCATACTATGGATGTTGACTAA

Protein sequence

>Msa0091830

MEVNKGTGEYEISEESRLARERQEKTMQDLMMRRRAAALAVPTNDMAVRAHLRHLGEPITLFREREMERRDRLRMIMAKLDADGQLEKLMKALEDEEAATSTPKDEAEDDLQYPFHNEGSNSLLNARIDIAKYSLVRAALRIQRARRRRDDPDEDVDAEMDWTLKQAANLNLEFSEIGDVQRLTGCSFSRDGKRVASCSLTGATKLWSMPDVKKVSTFKGHTERATDVAYSPVHNNHLATASADRTANYWNDQGSLLRTFKGHREPLARIAFHPSGKYLGTASDDKTWRLWDVETGEELLLQEGHSRSVFGLAFHHDGSLAASCGKDALARVWDLRTDRSVLALEGHVKPIRGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSKLISQVKFEPQEGFFLVTSSFDMTAKVWSGRDFKHVKTLSGHEDRVSSVDVLGDGGYIVTVSHDRTIKLWSNGFTSEHTMDVD*