AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0656270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656270 MtrunA17_Chr8g0376971 94.545 660 35 1 1 659 1 660 0.0 1299
Msa0656270 MtrunA17_Chr3g0122941 58.200 689 235 19 1 659 1 666 0.0 734
Msa0656270 MtrunA17_Chr6g0458951 48.571 665 303 17 1 635 1 656 0.0 542
Msa0656270 MtrunA17_Chr7g0276681 30.279 251 116 9 189 382 47 295 4.41e-17 85.1
Msa0656270 MtrunA17_Chr7g0263471 29.293 198 122 5 189 386 162 341 3.19e-13 72.8
Msa0656270 MtrunA17_Chr1g0212971 29.091 220 128 5 102 320 131 323 4.01e-13 72.4
Msa0656270 MtrunA17_Chr2g0331191 27.717 184 109 4 220 382 139 319 6.48e-13 72.0
Msa0656270 MtrunA17_Chr4g0030551 30.256 195 120 3 102 296 70 248 7.19e-13 71.6
Msa0656270 MtrunA17_Chr4g0030551 25.000 212 141 3 188 399 108 301 1.56e-12 70.5
Msa0656270 MtrunA17_Chr2g0327711 24.823 282 175 9 106 382 31 280 7.55e-13 71.6
Msa0656270 MtrunA17_Chr2g0327711 25.391 256 135 7 189 405 31 269 1.88e-12 70.1
Msa0656270 MtrunA17_Chr7g0263421 28.796 191 118 4 106 295 53 226 1.48e-12 70.5
Msa0656270 MtrunA17_Chr1g0161231 27.322 183 115 4 212 393 82 247 3.03e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656270 AT3G01750.2 49.310 580 265 9 1 559 1 572 0.0 535
Msa0656270 AT3G01750.1 49.310 580 265 9 1 559 1 572 0.0 535
Msa0656270 AT3G04140.1 43.750 672 323 17 1 650 1 639 1.68e-160 476
Msa0656270 AT1G07710.2 31.163 215 127 7 98 311 99 293 6.51e-15 78.6
Msa0656270 AT1G07710.2 25.887 282 174 9 105 382 30 280 3.78e-13 72.8
Msa0656270 AT1G07710.2 25.688 218 145 4 188 405 69 269 1.47e-11 67.8
Msa0656270 AT1G07710.1 31.163 215 127 7 98 311 99 293 6.51e-15 78.6
Msa0656270 AT1G07710.1 25.887 282 174 9 105 382 30 280 3.78e-13 72.8
Msa0656270 AT1G07710.1 25.688 218 145 4 188 405 69 269 1.47e-11 67.8
Msa0656270 AT5G02620.4 26.154 195 126 4 188 382 94 270 1.63e-12 70.9
Msa0656270 AT5G02620.1 26.154 195 126 4 188 382 94 270 1.63e-12 70.9
Msa0656270 AT5G02620.3 26.154 195 126 4 188 382 94 270 1.63e-12 70.9
Msa0656270 AT2G31820.1 28.962 183 106 6 221 382 224 403 7.02e-12 68.9
Msa0656270 AT3G09550.1 27.064 218 133 5 102 319 143 334 2.39e-11 67.4
Msa0656270 AT3G09550.3 27.064 218 133 5 102 319 143 334 2.39e-11 67.4
Msa0656270 AT3G09550.2 27.064 218 133 5 102 319 150 341 2.47e-11 67.4
Msa0656270 AT5G02620.5 28.931 159 96 3 188 346 94 235 3.40e-11 66.6
Msa0656270 AT5G02620.2 28.931 159 96 3 188 346 94 235 3.40e-11 66.6

Find 120 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGACTAGTGGTGTTAAT+TGG 0.207448 4_3:-65536701 Msa0656270:CDS
AAGAATTTCCAATCTCATTA+AGG 0.276743 4_3:-65536557 Msa0656270:CDS
TGCTGCTTCTGCTGGTGATT+TGG 0.292656 4_3:-65538434 Msa0656270:CDS
ATCATCGTCTTCAAATTCTA+AGG 0.293118 4_3:+65536620 None:intergenic
TCTCTCATTCGTGGTGGATA+TGG 0.311166 4_3:-65538475 Msa0656270:CDS
TATCTTTGCCTTAATGAGAT+TGG 0.319231 4_3:+65536549 None:intergenic
CTGGCTGGTTGCAGGCTAAA+TGG 0.321880 4_3:+65539230 None:intergenic
CCTAATGCAAGGTGTAATTA+AGG 0.327932 4_3:-65536433 Msa0656270:CDS
ACAAATTGCTGGCTGGTTGC+AGG 0.333847 4_3:+65539222 None:intergenic
AACCAGCCAGCAATTTGTTT+TGG 0.335313 4_3:-65539217 Msa0656270:five_prime_UTR
TGATATTCTAAATGAAGTTC+CGG 0.337345 4_3:+65536842 None:intergenic
ACAAAAGAACACTATCTATA+AGG 0.350958 4_3:-65536500 Msa0656270:CDS
TTGAAAACTCGTCATGGTAT+TGG 0.358691 4_3:-65536873 Msa0656270:CDS
TCAGTAGAGTTTATAATATC+AGG 0.361249 4_3:+65537392 None:intergenic
CCTTAATTACACCTTGCATT+AGG 0.369020 4_3:+65536433 None:intergenic
AGATTGTGGTATTGTTGAAT+TGG 0.372361 4_3:-65538266 Msa0656270:CDS
CAAGAGGGAGATAGTGAATA+GGG 0.378021 4_3:-65538218 Msa0656270:CDS
TTGTATACTGCTGCTTCTGC+TGG 0.379152 4_3:-65538442 Msa0656270:CDS
TTTCTTCATATGGCAATGTA+TGG 0.383930 4_3:-65537251 Msa0656270:CDS
TTAATAATTCTGTAAGTTCA+AGG 0.385745 4_3:-65536593 Msa0656270:CDS
CTGCTGCTAGAGGAGGGAAT+TGG 0.395808 4_3:-65538186 Msa0656270:CDS
CTTGTACTTCACTGTTTACA+AGG 0.398911 4_3:-65539178 Msa0656270:intron
TCTCCTTATAGTTCAACTGC+TGG 0.409261 4_3:+65536295 None:intergenic
TGCTGCTAGAGGAGGGAATT+GGG 0.409718 4_3:-65538185 Msa0656270:CDS
GTTGAGAAGGGATTCTTTGT+TGG 0.411093 4_3:-65538395 Msa0656270:CDS
AATTCAGAAGATCTTGATCT+TGG 0.413086 4_3:+65536975 None:intergenic
TTCTTACTTTCCTCTACGTT+GGG 0.414168 4_3:-65538749 Msa0656270:CDS
TACCCAGCAGTTGAACTATA+AGG 0.415427 4_3:-65536298 Msa0656270:CDS
TGGAGCACAAGGGCAGGCTT+TGG 0.420864 4_3:-65536232 Msa0656270:CDS
CAAGACTAGTGGTGTTAATT+GGG 0.421578 4_3:-65536700 Msa0656270:CDS
TTTGCAGCTGCTAAATCAAT+AGG 0.426019 4_3:+65538694 None:intergenic
ATGTATGGTTTCACAAATCC+TGG 0.427463 4_3:-65537236 Msa0656270:CDS
ATCAATGTCAAGAACAATGT+TGG 0.432252 4_3:-65537134 Msa0656270:CDS
TCAAGAGGGAGATAGTGAAT+AGG 0.438387 4_3:-65538219 Msa0656270:CDS
AAAAGTGTCTCCATTGTGAT+TGG 0.439400 4_3:+65537271 None:intergenic
TAGTAGCCAAAACAAATTGC+TGG 0.441988 4_3:+65539211 None:intergenic
GATATTCTAAATGAAGTTCC+GGG 0.452704 4_3:+65536843 None:intergenic
TGCTCTAACGGACCAATAGA+TGG 0.459067 4_3:-65536327 Msa0656270:CDS
CGTTGCATAAATGTTACTAC+TGG 0.459987 4_3:-65536154 Msa0656270:exon
CGAAAAGGTTGCGAACATAA+AGG 0.466998 4_3:-65537162 Msa0656270:CDS
TGAGAAGATTTGTATCATGA+TGG 0.469922 4_3:+65538641 None:intergenic
TGAGTTATTACTAACCGAAA+AGG 0.479208 4_3:-65537177 Msa0656270:CDS
TTATATTATAGAGATGTTCA+AGG 0.482863 4_3:-65538118 Msa0656270:CDS
AAATGTTACTACTGGTATCA+TGG 0.489413 4_3:-65536146 Msa0656270:three_prime_UTR
TTCTTCAACAGTGATTTGAA+TGG 0.490235 4_3:-65538776 Msa0656270:intron
CTTAACATTCGCGACGCAGA+TGG 0.490419 4_3:-65537029 Msa0656270:CDS
TTGCATTCAGCAGCTGGAAG+AGG 0.493545 4_3:-65538085 Msa0656270:CDS
ATTGATTTAGCAGCTGCAAA+TGG 0.494631 4_3:-65538691 Msa0656270:CDS
CTCCTTATAGTTCAACTGCT+GGG 0.496758 4_3:+65536296 None:intergenic
AGTGCTTTGAATTGTAGCCT+TGG 0.497150 4_3:+65535980 None:intergenic
TCAATGTCAAGAACAATGTT+GGG 0.501046 4_3:-65537133 Msa0656270:CDS
TTCTTCTACGCCACTTGAGA+AGG 0.501910 4_3:+65536658 None:intergenic
TTGGATGAAGGTGTTGGTGG+TGG 0.504868 4_3:-65538247 Msa0656270:CDS
CTTCTTACTTTCCTCTACGT+TGG 0.504888 4_3:-65538750 Msa0656270:CDS
TGTTTATGAATTGTTGAGAA+GGG 0.505920 4_3:-65538407 Msa0656270:CDS
GGACTGCCCTCTTGCTCTAA+CGG 0.508812 4_3:-65536339 Msa0656270:CDS
GGTATTGTTGAATTGGATGA+AGG 0.511469 4_3:-65538259 Msa0656270:CDS
AGCTGGAAGAGGCCAGGTTG+AGG 0.513559 4_3:-65538074 Msa0656270:intron
GAGTGTGAAGAAACAGCAAC+AGG 0.514596 4_3:-65538505 Msa0656270:CDS
GCTCTCTTGGGAAAAGATTG+TGG 0.515816 4_3:-65538280 Msa0656270:CDS
CTACTGGTATCATGGTGGAT+TGG 0.523695 4_3:-65536138 Msa0656270:three_prime_UTR
CACAAACATGTTGATACACT+GGG 0.530524 4_3:-65536360 Msa0656270:CDS
CTCATTCGTGGTGGATATGG+TGG 0.531172 4_3:-65538472 Msa0656270:CDS
TTCAGCAGCTGGAAGAGGCC+AGG 0.531435 4_3:-65538080 Msa0656270:CDS
AAAACTCGTCATGGTATTGG+AGG 0.532617 4_3:-65536870 Msa0656270:CDS
CATGGTATTGGAGGTAGTCC+CGG 0.533373 4_3:-65536861 Msa0656270:CDS
GTTGAATTGGATGAAGGTGT+TGG 0.536043 4_3:-65538253 Msa0656270:CDS
GCACAAACATGTTGATACAC+TGG 0.536271 4_3:-65536361 Msa0656270:CDS
GTGTTAATTGGGCCGCGAGA+CGG 0.548204 4_3:-65536689 Msa0656270:CDS
AGCCAAAACAAATTGCTGGC+TGG 0.555309 4_3:+65539215 None:intergenic
GAATTGGATGAAGGTGTTGG+TGG 0.556011 4_3:-65538250 Msa0656270:CDS
CCTCTACGTTGGGAGAGCAC+AGG 0.559069 4_3:-65538739 Msa0656270:CDS
TAGGTGTTGCATACCACCAT+TGG 0.559115 4_3:+65538713 None:intergenic
TTGTTTATGAATTGTTGAGA+AGG 0.562613 4_3:-65538408 Msa0656270:CDS
GCTATTCATGCTGCTGCTAG+AGG 0.565183 4_3:-65538196 Msa0656270:CDS
TGCAATGAAAATGATCAAGC+AGG 0.567272 4_3:-65536795 Msa0656270:CDS
GGAACAAACTCTCTCATTCG+TGG 0.569551 4_3:-65538484 Msa0656270:CDS
TTGTCTAGTCTGCAGAAACC+AGG 0.572724 4_3:+65537218 None:intergenic
AAACAAAACTACAACTGTTG+TGG 0.575593 4_3:+65539274 None:intergenic
TAACGGACCAATAGATGGTG+GGG 0.576593 4_3:-65536322 Msa0656270:CDS
CAACGTAGAGGAAAGTAAGA+AGG 0.582105 4_3:+65538751 None:intergenic
CTTGTAAACAGTGAAGTACA+AGG 0.582338 4_3:+65539179 None:intergenic
TATTGGTCCGTTAGAGCAAG+AGG 0.583336 4_3:+65536332 None:intergenic
TGTGAGTCCTTACCTCAACC+TGG 0.583391 4_3:+65538062 None:intergenic
ATTCATGCTGCTGCTAGAGG+AGG 0.586565 4_3:-65538193 Msa0656270:CDS
TTGCAGGCTAAATGGTGACT+AGG 0.591767 4_3:+65539238 None:intergenic
CTAACGGACCAATAGATGGT+GGG 0.592448 4_3:-65536323 Msa0656270:CDS
TGGTGGATTGGACAAAATCA+TGG 0.601523 4_3:-65536126 Msa0656270:three_prime_UTR
TTGAAGATGTTGCAAAGTGT+AGG 0.602447 4_3:-65538555 Msa0656270:CDS
ATAATGTTTGTTTAGTATCG+CGG 0.603308 4_3:+65536052 None:intergenic
TTACAGAGGTTACCTTCATG+TGG 0.604215 4_3:-65537336 Msa0656270:CDS
TTACATGTGGCTTCTTACAG+AGG 0.606656 4_3:-65537350 Msa0656270:CDS
TTCACTGCAGGCCTAATGCA+AGG 0.610079 4_3:-65536444 Msa0656270:CDS
TTCATGCTGCTGCTAGAGGA+GGG 0.615437 4_3:-65538192 Msa0656270:CDS
ACTCATTTGAAAACTCGTCA+TGG 0.623099 4_3:-65536879 Msa0656270:CDS
ATATGCTTTATGCTGCAGCT+AGG 0.623467 4_3:-65538342 Msa0656270:CDS
TTCGTGGTGGATATGGTGGA+TGG 0.624766 4_3:-65538468 Msa0656270:CDS
TTAGAATCTCTACCACATGA+AGG 0.626407 4_3:+65537324 None:intergenic
ATATAGAAACTAATAAGCCA+AGG 0.626561 4_3:-65535997 Msa0656270:three_prime_UTR
GGGAGAGCACAGGAGACCAA+TGG 0.629721 4_3:-65538729 Msa0656270:CDS
TCTAACGGACCAATAGATGG+TGG 0.643080 4_3:-65536324 Msa0656270:CDS
AGCTAGGAGTAAGAATTCTG+AGG 0.643118 4_3:-65538326 Msa0656270:CDS
AGGTAATGCCGCATTACATG+TGG 0.644420 4_3:-65537363 Msa0656270:CDS
AACGGACCAATAGATGGTGG+GGG 0.644986 4_3:-65536321 Msa0656270:CDS
ACTAGTCTTGCTGTTACATG+AGG 0.645032 4_3:+65536713 None:intergenic
TCATGTAACAGCAAGACTAG+TGG 0.650511 4_3:-65536711 Msa0656270:CDS
GGTTAATGAACCTTCTCAAG+TGG 0.653219 4_3:-65536668 Msa0656270:CDS
TCGTCGACTAGAAACTGTGT+GGG 0.654713 4_3:-65538593 Msa0656270:CDS
GTAAGAAGCCACATGTAATG+CGG 0.659012 4_3:+65537355 None:intergenic
CCTGTGCTCTCCCAACGTAG+AGG 0.659563 4_3:+65538739 None:intergenic
ACAAAGTTAACCAATCACAA+TGG 0.661701 4_3:-65537281 Msa0656270:CDS
AGAGCACAGGAGACCAATGG+TGG 0.668331 4_3:-65538726 Msa0656270:CDS
ACAAACTCTCTCATTCGTGG+TGG 0.676010 4_3:-65538481 Msa0656270:CDS
TTCGTCGACTAGAAACTGTG+TGG 0.676029 4_3:-65538594 Msa0656270:CDS
ATAAACTCTACTGATGCACA+AGG 0.678669 4_3:-65537383 Msa0656270:CDS
TGGTGACTAGGAGATAGTCA+AGG 0.689183 4_3:+65539250 None:intergenic
ATTGGTCCGTTAGAGCAAGA+GGG 0.692608 4_3:+65536333 None:intergenic
TGTTACTACTGGTATCATGG+TGG 0.697794 4_3:-65536143 Msa0656270:three_prime_UTR
AAGGTTCATTAACCGTCTCG+CGG 0.699125 4_3:+65536677 None:intergenic
TGGATTGGACAAAATCATGG+TGG 0.816536 4_3:-65536123 Msa0656270:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTGGTCAAAAATAA+TGG + chr4_3:65536207-65536226 None:intergenic 15.0%
!!! TTGTTTTTTTCACTTTTTAT+TGG + chr4_3:65536220-65536239 None:intergenic 15.0%
!! AATAAAAAGTGAAAAAAACA+AGG - chr4_3:65536219-65536238 Msa0656270:CDS 15.0%
!! AATTAAATAATTAATGATGC+AGG - chr4_3:65537778-65537797 Msa0656270:intron 15.0%
!! AATAATGAGATGAAAATTCT+AGG + chr4_3:65536079-65536098 None:intergenic 20.0%
!! TATGAAAAAGTGAAAGTTAT+TGG + chr4_3:65536302-65536321 None:intergenic 20.0%
!! ATATTCTCCTAATAATTGAA+TGG - chr4_3:65536364-65536383 Msa0656270:CDS 20.0%
!! TGAAAAACCATTCAATTATT+AGG + chr4_3:65536374-65536393 None:intergenic 20.0%
!! TTATATTATAGAGATGTTCA+AGG - chr4_3:65537101-65537120 Msa0656270:CDS 20.0%
!!! ATTTTAGAGACAAAATCATA+TGG + chr4_3:65537461-65537480 None:intergenic 20.0%
!! TATAAAATTGTCCCTAAAAA+TGG + chr4_3:65537584-65537603 None:intergenic 20.0%
!! ACAGTTAATACTAAATAATC+TGG - chr4_3:65537695-65537714 Msa0656270:intron 20.0%
!! CAGTTAATACTAAATAATCT+GGG - chr4_3:65537696-65537715 Msa0656270:intron 20.0%
!!! CTTTTTTTCAAATAATCAAG+AGG + chr4_3:65538223-65538242 None:intergenic 20.0%
!! TTAATAATTCTGTAAGTTCA+AGG - chr4_3:65538626-65538645 Msa0656270:CDS 20.0%
!!! ATGAACAAGTATTTTTCTTT+TGG - chr4_3:65538967-65538986 Msa0656270:intron 20.0%
! TCCAAAAGTTATCAAAAAGT+GGG + chr4_3:65536126-65536145 None:intergenic 25.0%
!! AAAATAATGGAGAGAGAAAA+AGG + chr4_3:65536194-65536213 None:intergenic 25.0%
! CTTTATGTTTATTCTTCTCT+TGG + chr4_3:65536326-65536345 None:intergenic 25.0%
! TTGTTTATGAATTGTTGAGA+AGG - chr4_3:65536811-65536830 Msa0656270:CDS 25.0%
! TGTTTATGAATTGTTGAGAA+GGG - chr4_3:65536812-65536831 Msa0656270:CDS 25.0%
! ACAAAATCATATGGTTTCTA+GGG + chr4_3:65537452-65537471 None:intergenic 25.0%
! TGATCAACTTTATAATGTGA+TGG - chr4_3:65537551-65537570 Msa0656270:intron 25.0%
! GATCAACTTTATAATGTGAT+GGG - chr4_3:65537552-65537571 Msa0656270:intron 25.0%
! ATCAACTTTATAATGTGATG+GGG - chr4_3:65537553-65537572 Msa0656270:intron 25.0%
! CTAAATAATCTGGGAATAAA+AGG - chr4_3:65537705-65537724 Msa0656270:intron 25.0%
! TAAATAATTAATGATGCAGG+TGG - chr4_3:65537781-65537800 Msa0656270:intron 25.0%
! TCAGTAGAGTTTATAATATC+AGG + chr4_3:65537830-65537849 None:intergenic 25.0%
! TGATATTCTAAATGAAGTTC+CGG + chr4_3:65538380-65538399 None:intergenic 25.0%
! AAGTTCAAGGAAAAATGATT+TGG - chr4_3:65538639-65538658 Msa0656270:CDS 25.0%
! AAGAATTTCCAATCTCATTA+AGG - chr4_3:65538662-65538681 Msa0656270:CDS 25.0%
! ACAAAAGAACACTATCTATA+AGG - chr4_3:65538719-65538738 Msa0656270:CDS 25.0%
!!! GTGAAATATTTTTTTGCAGA+TGG + chr4_3:65538760-65538779 None:intergenic 25.0%
!! TGATTTTGTTGAAACTATAG+TGG - chr4_3:65539124-65539143 Msa0656270:intron 25.0%
! ATAATGTTTGTTTAGTATCG+CGG + chr4_3:65539170-65539189 None:intergenic 25.0%
! ATATAGAAACTAATAAGCCA+AGG - chr4_3:65539222-65539241 Msa0656270:five_prime_UTR 25.0%
AAACAAAACTACAACTGTTG+TGG + chr4_3:65535948-65535967 None:intergenic 30.0%
! ATGAGATGAAAATTCTAGGA+AGG + chr4_3:65536075-65536094 None:intergenic 30.0%
!!! ACCCACTTTTTGATAACTTT+TGG - chr4_3:65536122-65536141 Msa0656270:three_prime_UTR 30.0%
GTCCAAAAGTTATCAAAAAG+TGG + chr4_3:65536127-65536146 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr4_3:65536245-65536264 Msa0656270:CDS 30.0%
GTTGAAGAAACAAAGTAAAG+TGG + chr4_3:65536432-65536451 None:intergenic 30.0%
TTCTTCAACAGTGATTTGAA+TGG - chr4_3:65536443-65536462 Msa0656270:CDS 30.0%
TGAGAAGATTTGTATCATGA+TGG + chr4_3:65536581-65536600 None:intergenic 30.0%
! ATTCTTGATTTTGCTCTCTT+GGG - chr4_3:65536927-65536946 Msa0656270:CDS 30.0%
AGATTGTGGTATTGTTGAAT+TGG - chr4_3:65536953-65536972 Msa0656270:CDS 30.0%
GACAAAATCATATGGTTTCT+AGG + chr4_3:65537453-65537472 None:intergenic 30.0%
!! TGTCTCTAAAATTGTAGAAC+CGG - chr4_3:65537469-65537488 Msa0656270:intron 30.0%
! GATCGAAGATTTTCAATTTC+AGG + chr4_3:65537507-65537526 None:intergenic 30.0%
!! ATTTTAGTCCCTCACTATTT+CGG + chr4_3:65537639-65537658 None:intergenic 30.0%
AATAATCTGGGAATAAAAGG+AGG - chr4_3:65537708-65537727 Msa0656270:intron 30.0%
ACAAAGTTAACCAATCACAA+TGG - chr4_3:65537938-65537957 Msa0656270:intron 30.0%
TTTCTTCATATGGCAATGTA+TGG - chr4_3:65537968-65537987 Msa0656270:intron 30.0%
TGAGTTATTACTAACCGAAA+AGG - chr4_3:65538042-65538061 Msa0656270:intron 30.0%
ATCAATGTCAAGAACAATGT+TGG - chr4_3:65538085-65538104 Msa0656270:CDS 30.0%
TCAATGTCAAGAACAATGTT+GGG - chr4_3:65538086-65538105 Msa0656270:CDS 30.0%
AATTCAGAAGATCTTGATCT+TGG + chr4_3:65538247-65538266 None:intergenic 30.0%
GATATTCTAAATGAAGTTCC+GGG + chr4_3:65538379-65538398 None:intergenic 30.0%
ATCATCGTCTTCAAATTCTA+AGG + chr4_3:65538602-65538621 None:intergenic 30.0%
TATCTTTGCCTTAATGAGAT+TGG + chr4_3:65538673-65538692 None:intergenic 30.0%
!!! GATAGTGTTCTTTTGTTGTT+TGG + chr4_3:65538715-65538734 None:intergenic 30.0%
!!! TATTTTTTTGCAGATGGAGT+TGG + chr4_3:65538754-65538773 None:intergenic 30.0%
GCAAAAAAATATTTCACTGC+AGG - chr4_3:65538763-65538782 Msa0656270:exon 30.0%
AAGGTAAAGACACAAAAAGA+AGG - chr4_3:65538805-65538824 Msa0656270:intron 30.0%
AGGTAAAGACACAAAAAGAA+GGG - chr4_3:65538806-65538825 Msa0656270:intron 30.0%
!!! TATTTTTCTTTTGGAGCACA+AGG - chr4_3:65538976-65538995 Msa0656270:intron 30.0%
!!! ATTTTTCTTTTGGAGCACAA+GGG - chr4_3:65538977-65538996 Msa0656270:intron 30.0%
AAATGTTACTACTGGTATCA+TGG - chr4_3:65539073-65539092 Msa0656270:intron 30.0%
TAGTAGCCAAAACAAATTGC+TGG + chr4_3:65536011-65536030 None:intergenic 35.0%
CTTGTAAACAGTGAAGTACA+AGG + chr4_3:65536043-65536062 None:intergenic 35.0%
CTTGTACTTCACTGTTTACA+AGG - chr4_3:65536041-65536060 Msa0656270:three_prime_UTR 35.0%
TTCTTACTTTCCTCTACGTT+GGG - chr4_3:65536470-65536489 Msa0656270:CDS 35.0%
TTTGCAGCTGCTAAATCAAT+AGG + chr4_3:65536528-65536547 None:intergenic 35.0%
! ATTGATTTAGCAGCTGCAAA+TGG - chr4_3:65536528-65536547 Msa0656270:CDS 35.0%
TTGAAGATGTTGCAAAGTGT+AGG - chr4_3:65536664-65536683 Msa0656270:CDS 35.0%
!!! AGGGATTCTTTGTTGGTTTT+TGG - chr4_3:65536831-65536850 Msa0656270:CDS 35.0%
!!! TCTTTGTTGGTTTTTGGTGA+AGG - chr4_3:65536837-65536856 Msa0656270:CDS 35.0%
! GATTCTTGATTTTGCTCTCT+TGG - chr4_3:65536926-65536945 Msa0656270:CDS 35.0%
GGTATTGTTGAATTGGATGA+AGG - chr4_3:65536960-65536979 Msa0656270:CDS 35.0%
ACTCAGATTAAAGACGTATC+CGG + chr4_3:65537399-65537418 None:intergenic 35.0%
TTTCAGGATCAAATTGTGTC+CGG + chr4_3:65537491-65537510 None:intergenic 35.0%
!! ATGGGGAGTTTCCATTTTTA+GGG - chr4_3:65537570-65537589 Msa0656270:intron 35.0%
ACTATTTCGGTAGAGCAATT+CGG + chr4_3:65537626-65537645 None:intergenic 35.0%
ATAAACTCTACTGATGCACA+AGG - chr4_3:65537836-65537855 Msa0656270:intron 35.0%
TTAGAATCTCTACCACATGA+AGG + chr4_3:65537898-65537917 None:intergenic 35.0%
!! AAAAGTGTCTCCATTGTGAT+TGG + chr4_3:65537951-65537970 None:intergenic 35.0%
! TGGAGACACTTTTCTTCATA+TGG - chr4_3:65537958-65537977 Msa0656270:intron 35.0%
ATGTATGGTTTCACAAATCC+TGG - chr4_3:65537983-65538002 Msa0656270:intron 35.0%
! CTTTATGTTCGCAACCTTTT+CGG + chr4_3:65538059-65538078 None:intergenic 35.0%
ACTCATTTGAAAACTCGTCA+TGG - chr4_3:65538340-65538359 Msa0656270:CDS 35.0%
TTGAAAACTCGTCATGGTAT+TGG - chr4_3:65538346-65538365 Msa0656270:CDS 35.0%
TGCAATGAAAATGATCAAGC+AGG - chr4_3:65538424-65538443 Msa0656270:CDS 35.0%
! CAAGACTAGTGGTGTTAATT+GGG - chr4_3:65538519-65538538 Msa0656270:CDS 35.0%
CCTTAATTACACCTTGCATT+AGG + chr4_3:65538789-65538808 None:intergenic 35.0%
CCTAATGCAAGGTGTAATTA+AGG - chr4_3:65538786-65538805 Msa0656270:intron 35.0%
CACAAACATGTTGATACACT+GGG - chr4_3:65538859-65538878 Msa0656270:intron 35.0%
CGTTGCATAAATGTTACTAC+TGG - chr4_3:65539065-65539084 Msa0656270:intron 35.0%
!! AACCAGCCAGCAATTTGTTT+TGG - chr4_3:65536002-65536021 Msa0656270:three_prime_UTR 40.0%
CAACGTAGAGGAAAGTAAGA+AGG + chr4_3:65536471-65536490 None:intergenic 40.0%
CTTCTTACTTTCCTCTACGT+TGG - chr4_3:65536469-65536488 Msa0656270:CDS 40.0%
GTTGAGAAGGGATTCTTTGT+TGG - chr4_3:65536824-65536843 Msa0656270:CDS 40.0%
!!! GTTTTTGGTGAAGGAGAGTA+TGG - chr4_3:65536846-65536865 Msa0656270:CDS 40.0%
ATATGCTTTATGCTGCAGCT+AGG - chr4_3:65536877-65536896 Msa0656270:CDS 40.0%
AGCTAGGAGTAAGAATTCTG+AGG - chr4_3:65536893-65536912 Msa0656270:CDS 40.0%
! GTTGAATTGGATGAAGGTGT+TGG - chr4_3:65536966-65536985 Msa0656270:CDS 40.0%
TCAAGAGGGAGATAGTGAAT+AGG - chr4_3:65537000-65537019 Msa0656270:CDS 40.0%
CAAGAGGGAGATAGTGAATA+GGG - chr4_3:65537001-65537020 Msa0656270:CDS 40.0%
!! CTTGCTATGAAGTACTGACA+TGG - chr4_3:65537277-65537296 Msa0656270:CDS 40.0%
CCATGTCACATTCTAAACAC+CGG - chr4_3:65537377-65537396 Msa0656270:CDS 40.0%
! TTTCTAGGGATCATACAAGC+AGG + chr4_3:65537438-65537457 None:intergenic 40.0%
!! GATGGGGAGTTTCCATTTTT+AGG - chr4_3:65537569-65537588 Msa0656270:intron 40.0%
ATTGCTCTACCGAAATAGTG+AGG - chr4_3:65537627-65537646 Msa0656270:intron 40.0%
TTGCTCTACCGAAATAGTGA+GGG - chr4_3:65537628-65537647 Msa0656270:intron 40.0%
GTAAGAAGCCACATGTAATG+CGG + chr4_3:65537867-65537886 None:intergenic 40.0%
TTACATGTGGCTTCTTACAG+AGG - chr4_3:65537869-65537888 Msa0656270:intron 40.0%
TTACAGAGGTTACCTTCATG+TGG - chr4_3:65537883-65537902 Msa0656270:intron 40.0%
CGAAAAGGTTGCGAACATAA+AGG - chr4_3:65538057-65538076 Msa0656270:intron 40.0%
! AAAACTCGTCATGGTATTGG+AGG - chr4_3:65538349-65538368 Msa0656270:CDS 40.0%
!! ACTAGTCTTGCTGTTACATG+AGG + chr4_3:65538509-65538528 None:intergenic 40.0%
TCATGTAACAGCAAGACTAG+TGG - chr4_3:65538508-65538527 Msa0656270:CDS 40.0%
! GCAAGACTAGTGGTGTTAAT+TGG - chr4_3:65538518-65538537 Msa0656270:CDS 40.0%
GGTTAATGAACCTTCTCAAG+TGG - chr4_3:65538551-65538570 Msa0656270:CDS 40.0%
GCACAAACATGTTGATACAC+TGG - chr4_3:65538858-65538877 Msa0656270:intron 40.0%
TACCCAGCAGTTGAACTATA+AGG - chr4_3:65538921-65538940 Msa0656270:intron 40.0%
CTCCTTATAGTTCAACTGCT+GGG + chr4_3:65538926-65538945 None:intergenic 40.0%
TCTCCTTATAGTTCAACTGC+TGG + chr4_3:65538927-65538946 None:intergenic 40.0%
TGTTACTACTGGTATCATGG+TGG - chr4_3:65539076-65539095 Msa0656270:intron 40.0%
!! TGGTGGATTGGACAAAATCA+TGG - chr4_3:65539093-65539112 Msa0656270:intron 40.0%
! TGGATTGGACAAAATCATGG+TGG - chr4_3:65539096-65539115 Msa0656270:intron 40.0%
! AGTGCTTTGAATTGTAGCCT+TGG + chr4_3:65539242-65539261 None:intergenic 40.0%
TGGTGACTAGGAGATAGTCA+AGG + chr4_3:65535972-65535991 None:intergenic 45.0%
TTGCAGGCTAAATGGTGACT+AGG + chr4_3:65535984-65536003 None:intergenic 45.0%
AGCCAAAACAAATTGCTGGC+TGG + chr4_3:65536007-65536026 None:intergenic 45.0%
! TAGGTGTTGCATACCACCAT+TGG + chr4_3:65536509-65536528 None:intergenic 45.0%
! TTCGTCGACTAGAAACTGTG+TGG - chr4_3:65536625-65536644 Msa0656270:CDS 45.0%
! TCGTCGACTAGAAACTGTGT+GGG - chr4_3:65536626-65536645 Msa0656270:CDS 45.0%
GAGTGTGAAGAAACAGCAAC+AGG - chr4_3:65536714-65536733 Msa0656270:CDS 45.0%
GGAACAAACTCTCTCATTCG+TGG - chr4_3:65536735-65536754 Msa0656270:CDS 45.0%
ACAAACTCTCTCATTCGTGG+TGG - chr4_3:65536738-65536757 Msa0656270:CDS 45.0%
!! TCTCTCATTCGTGGTGGATA+TGG - chr4_3:65536744-65536763 Msa0656270:CDS 45.0%
! TTGTATACTGCTGCTTCTGC+TGG - chr4_3:65536777-65536796 Msa0656270:CDS 45.0%
GCTCTCTTGGGAAAAGATTG+TGG - chr4_3:65536939-65536958 Msa0656270:CDS 45.0%
!! GAATTGGATGAAGGTGTTGG+TGG - chr4_3:65536969-65536988 Msa0656270:CDS 45.0%
!!! TTGGTGGTGGAGTTTTCAAG+AGG - chr4_3:65536985-65537004 Msa0656270:CDS 45.0%
!!! TGGTGGTGGAGTTTTCAAGA+GGG - chr4_3:65536986-65537005 Msa0656270:CDS 45.0%
! ACTGTTTTGCATTCAGCAGC+TGG - chr4_3:65537128-65537147 Msa0656270:CDS 45.0%
GTCAGTACTTCATAGCAAGC+AGG + chr4_3:65537276-65537295 None:intergenic 45.0%
! CCGGTGTTTAGAATGTGACA+TGG + chr4_3:65537380-65537399 None:intergenic 45.0%
AGGTAATGCCGCATTACATG+TGG - chr4_3:65537856-65537875 Msa0656270:intron 45.0%
TTGTCTAGTCTGCAGAAACC+AGG + chr4_3:65538004-65538023 None:intergenic 45.0%
AAGGTTCATTAACCGTCTCG+CGG + chr4_3:65538545-65538564 None:intergenic 45.0%
TTCTTCTACGCCACTTGAGA+AGG + chr4_3:65538564-65538583 None:intergenic 45.0%
ATTGGTCCGTTAGAGCAAGA+GGG + chr4_3:65538889-65538908 None:intergenic 45.0%
TATTGGTCCGTTAGAGCAAG+AGG + chr4_3:65538890-65538909 None:intergenic 45.0%
! TGCTCTAACGGACCAATAGA+TGG - chr4_3:65538892-65538911 Msa0656270:intron 45.0%
! TCTAACGGACCAATAGATGG+TGG - chr4_3:65538895-65538914 Msa0656270:intron 45.0%
! CTAACGGACCAATAGATGGT+GGG - chr4_3:65538896-65538915 Msa0656270:intron 45.0%
! TAACGGACCAATAGATGGTG+GGG - chr4_3:65538897-65538916 Msa0656270:intron 45.0%
!! CTACTGGTATCATGGTGGAT+TGG - chr4_3:65539081-65539100 Msa0656270:intron 45.0%
! ACAAATTGCTGGCTGGTTGC+AGG + chr4_3:65536000-65536019 None:intergenic 50.0%
!! CTCATTCGTGGTGGATATGG+TGG - chr4_3:65536747-65536766 Msa0656270:CDS 50.0%
!! TTCGTGGTGGATATGGTGGA+TGG - chr4_3:65536751-65536770 Msa0656270:CDS 50.0%
! TGCTGCTTCTGCTGGTGATT+TGG - chr4_3:65536785-65536804 Msa0656270:CDS 50.0%
!! TTGGATGAAGGTGTTGGTGG+TGG - chr4_3:65536972-65536991 Msa0656270:CDS 50.0%
GCTATTCATGCTGCTGCTAG+AGG - chr4_3:65537023-65537042 Msa0656270:CDS 50.0%
ATTCATGCTGCTGCTAGAGG+AGG - chr4_3:65537026-65537045 Msa0656270:CDS 50.0%
TTCATGCTGCTGCTAGAGGA+GGG - chr4_3:65537027-65537046 Msa0656270:CDS 50.0%
TGCTGCTAGAGGAGGGAATT+GGG - chr4_3:65537034-65537053 Msa0656270:CDS 50.0%
TTGCATTCAGCAGCTGGAAG+AGG - chr4_3:65537134-65537153 Msa0656270:CDS 50.0%
TGTGAGTCCTTACCTCAACC+TGG + chr4_3:65537160-65537179 None:intergenic 50.0%
GGTTGAGGTAAGGACTCACA+TGG - chr4_3:65537160-65537179 Msa0656270:CDS 50.0%
CTTAACATTCGCGACGCAGA+TGG - chr4_3:65538190-65538209 Msa0656270:CDS 50.0%
! CATGGTATTGGAGGTAGTCC+CGG - chr4_3:65538358-65538377 Msa0656270:CDS 50.0%
TTCACTGCAGGCCTAATGCA+AGG - chr4_3:65538775-65538794 Msa0656270:intron 50.0%
! AACGGACCAATAGATGGTGG+GGG - chr4_3:65538898-65538917 Msa0656270:intron 50.0%
!!! TTCTTTTGGAGCACAAGGGC+AGG - chr4_3:65538981-65539000 Msa0656270:intron 50.0%
! CTGGCTGGTTGCAGGCTAAA+TGG + chr4_3:65535992-65536011 None:intergenic 55.0%
AGAGCACAGGAGACCAATGG+TGG - chr4_3:65536493-65536512 Msa0656270:CDS 55.0%
CTGCTGCTAGAGGAGGGAAT+TGG - chr4_3:65537033-65537052 Msa0656270:CDS 55.0%
! GAAGAGGCCAGGTTGAGGTA+AGG - chr4_3:65537150-65537169 Msa0656270:CDS 55.0%
GTGTTAATTGGGCCGCGAGA+CGG - chr4_3:65538530-65538549 Msa0656270:CDS 55.0%
GGACTGCCCTCTTGCTCTAA+CGG - chr4_3:65538880-65538899 Msa0656270:intron 55.0%
TGGGTACCCCCACCATCTAT+TGG + chr4_3:65538907-65538926 None:intergenic 55.0%
CCTGTGCTCTCCCAACGTAG+AGG + chr4_3:65536483-65536502 None:intergenic 60.0%
! CCTCTACGTTGGGAGAGCAC+AGG - chr4_3:65536480-65536499 Msa0656270:CDS 60.0%
! GGGAGAGCACAGGAGACCAA+TGG - chr4_3:65536490-65536509 Msa0656270:CDS 60.0%
TTCAGCAGCTGGAAGAGGCC+AGG - chr4_3:65537139-65537158 Msa0656270:CDS 60.0%
AGCTGGAAGAGGCCAGGTTG+AGG - chr4_3:65537145-65537164 Msa0656270:CDS 60.0%
TGGAGCACAAGGGCAGGCTT+TGG - chr4_3:65538987-65539006 Msa0656270:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 65535942 65539299 65535942 ID=Msa0656270;Name=Msa0656270
chr4_3 mRNA 65535942 65539299 65535942 ID=Msa0656270-mRNA-1;Parent=Msa0656270;Name=Msa0656270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=129|1|1|1|0.5|0.33|3|225|659
chr4_3 exon 65535942 65537441 65535942 ID=Msa0656270-mRNA-1:exon:18610;Parent=Msa0656270-mRNA-1
chr4_3 exon 65538075 65538787 65538075 ID=Msa0656270-mRNA-1:exon:18609;Parent=Msa0656270-mRNA-1
chr4_3 exon 65539179 65539299 65539179 ID=Msa0656270-mRNA-1:exon:18608;Parent=Msa0656270-mRNA-1
chr4_3 five_prime_UTR 65539179 65539299 65539179 ID=Msa0656270-mRNA-1:five_prime_utr;Parent=Msa0656270-mRNA-1
chr4_3 five_prime_UTR 65538780 65538787 65538780 ID=Msa0656270-mRNA-1:five_prime_utr;Parent=Msa0656270-mRNA-1
chr4_3 CDS 65538075 65538779 65538075 ID=Msa0656270-mRNA-1:cds;Parent=Msa0656270-mRNA-1
chr4_3 CDS 65536167 65537441 65536167 ID=Msa0656270-mRNA-1:cds;Parent=Msa0656270-mRNA-1
chr4_3 three_prime_UTR 65535942 65536166 65535942 ID=Msa0656270-mRNA-1:three_prime_utr;Parent=Msa0656270-mRNA-1
Gene Sequence

>Msa0656270

ATGGCACCTTCTTACTTTCCTCTACGTTGGGAGAGCACAGGAGACCAATGGTGGTATGCAACACCTATTGATTTAGCAGCTGCAAATGGTCTCTATGATTTAGTAGCTGAGCTTCTCCATCATGATACAAATCTTCTCATTAAGCTCACTTCTCTTTGTCGAATTCGTCGACTAGAAACTGTGTGGGATGATGAAGCTCAGTTTGAAGATGTTGCAAAGTGTAGGTCTCATGTTGCAAAGAAACTTCTGCTTGAGTGTGAAGAAACAGCAACAGGAACAAACTCTCTCATTCGTGGTGGATATGGTGGATGGCTTTTGTATACTGCTGCTTCTGCTGGTGATTTGGAGTTTGTTTATGAATTGTTGAGAAGGGATTCTTTGTTGGTTTTTGGTGAAGGAGAGTATGGTGTTACTGATATGCTTTATGCTGCAGCTAGGAGTAAGAATTCTGAGGTATTCAACATGATTCTTGATTTTGCTCTCTTGGGAAAAGATTGTGGTATTGTTGAATTGGATGAAGGTGTTGGTGGTGGAGTTTTCAAGAGGGAGATAGTGAATAGGGCTATTCATGCTGCTGCTAGAGGAGGGAATTGGGAAATACTTCAGAAGCAGCTTCTTTTAGCAAGTGCTTCTCAGATTTTATATTATAGAGATGTTCAAGGATGCACTGTTTTGCATTCAGCAGCTGGAAGAGGCCAGGTTGAGGTGGTTAGAAATCTAATTGCATCGTCGCCTGATATTATAAACTCTACTGATGCACAAGGTAATGCCGCATTACATGTGGCTTCTTACAGAGGTTACCTTCATGTGGTAGAGATTCTAATTCAAGCATCTCTCTCACTAACAAAGTTAACCAATCACAATGGAGACACTTTTCTTCATATGGCAATGTATGGTTTCACAAATCCTGGTTTCTGCAGACTAGACAAGCACACTGAGCTCATGAATGAGTTATTACTAACCGAAAAGGTTGCGAACATAAAGGACATAATCAATGTCAAGAACAATGTTGGGAGAACAGCAATTCATGTAGCTGTGATTCATGATGTCAAGTGTGATGTACTTGAATCAATTATGTCTGTTGCATCAATCGATCTTAACATTCGCGACGCAGATGGAATGACACCTCTTGATTATTTGAAAAAAAGACCAAGATCAAGATCTTCTGAATTATTAATCAAGAAATTAATTTCATCTGTAAGTTTCTATAATCGTGAAGATTATATGACAAGAAACACAATTGTGACTCATTTGAAAACTCGTCATGGTATTGGAGGTAGTCCCGGAACTTCATTTAGAATATCAGATTCTAAGATACTCTTACACACATGCAATGAAAATGATCAAGCAGGTGTAGAATCAAATTCATGCTCAATTGAAGTAGACAGTAATTATGAGTCAGCTGAAAATTCCTCATGTAACAGCAAGACTAGTGGTGTTAATTGGGCCGCGAGACGGTTAATGAACCTTCTCAAGTGGCGTAGAAGAAGAGAGACAAAAGAAACCTTAGAATTTGAAGACGATGATTCTGTTAATAATTCTGTAAGTTCAAGGAAAAATGATTTGGAAGAATTTCCAATCTCATTAAGGCAAAGATACTCAAAACAGTGCTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACTTTACTTCCAACTCCATCTGCAAAAAAATATTTCACTGCAGGCCTAATGCAAGGTGTAATTAAGGTAAAGACACAAAAAGAAGGGTCTAATTTGTCTCATTCTTCAAACAATAAGCACAAACATGTTGATACACTGGGACTGCCCTCTTGCTCTAACGGACCAATAGATGGTGGGGGTACCCAGCAGTTGAACTATAAGGAGAGAAACTATAATAAGAAATTGATGAACAAGTATTTTTCTTTTGGAGCACAAGGGCAGGCTTTGGAAGATGCAAACACTTGCTCAATGTCAAATCACAGTTCTAAGTGTTTCAGTTATTTCGTTGCATAA

Protein sequence

>Msa0656270

MAPSYFPLRWESTGDQWWYATPIDLAAANGLYDLVAELLHHDTNLLIKLTSLCRIRRLETVWDDEAQFEDVAKCRSHVAKKLLLECEETATGTNSLIRGGYGGWLLYTAASAGDLEFVYELLRRDSLLVFGEGEYGVTDMLYAAARSKNSEVFNMILDFALLGKDCGIVELDEGVGGGVFKREIVNRAIHAAARGGNWEILQKQLLLASASQILYYRDVQGCTVLHSAAGRGQVEVVRNLIASSPDIINSTDAQGNAALHVASYRGYLHVVEILIQASLSLTKLTNHNGDTFLHMAMYGFTNPGFCRLDKHTELMNELLLTEKVANIKDIINVKNNVGRTAIHVAVIHDVKCDVLESIMSVASIDLNIRDADGMTPLDYLKKRPRSRSSELLIKKLISSVSFYNREDYMTRNTIVTHLKTRHGIGGSPGTSFRISDSKILLHTCNENDQAGVESNSCSIEVDSNYESAENSSCNSKTSGVNWAARRLMNLLKWRRRRETKETLEFEDDDSVNNSVSSRKNDLEEFPISLRQRYSKQCSLPNNKRTLSIRTLLPTPSAKKYFTAGLMQGVIKVKTQKEGSNLSHSSNNKHKHVDTLGLPSCSNGPIDGGGTQQLNYKERNYNKKLMNKYFSFGAQGQALEDANTCSMSNHSSKCFSYFVA*