AlfalfaGEDB | Msa0656270

M. sativa cultivar zhongmu-4 / Msa0656270

KEGG: -
GO: -
PFAM: PF13857.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0656270	XP_013446521.1	94.545	660	35	1	1	659	1	660	0.0	1299

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0656270	sp\|Q505D1\|ANR28_MOUSE	34.742	213	113	9	187	399	175	361	1.49e-11	71.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0656270	A0A072TUM3	94.545	660	35	1	1	659	1	660	0.0	1299

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0656270	0.825309	5.028248e-54	-8.615850e-47
Msa0005160	Msa0656270	0.805547	1.266568e-49	-8.615850e-47
Msa0005350	Msa0656270	0.832543	8.902845e-56	-8.615850e-47
Msa0006050	Msa0656270	0.800658	1.299598e-48	-8.615850e-47
Msa0006700	Msa0656270	0.889261	2.838253e-73	-8.615850e-47
Msa0006820	Msa0656270	0.827387	1.609274e-54	-8.615850e-47
Msa0007230	Msa0656270	0.808465	3.056890e-50	-8.615850e-47
Msa0008330	Msa0656270	0.806248	9.021563e-50	-8.615850e-47
Msa0008850	Msa0656270	0.909398	5.952198e-82	-8.615850e-47
Msa0011720	Msa0656270	0.843554	1.304323e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0656270	MtrunA17_Chr8g0376971	94.545	660	35	1	1	659	1	660	0.0	1299
Msa0656270	MtrunA17_Chr3g0122941	58.200	689	235	19	1	659	1	666	0.0	734
Msa0656270	MtrunA17_Chr6g0458951	48.571	665	303	17	1	635	1	656	0.0	542
Msa0656270	MtrunA17_Chr7g0276681	30.279	251	116	9	189	382	47	295	4.41e-17	85.1
Msa0656270	MtrunA17_Chr7g0263471	29.293	198	122	5	189	386	162	341	3.19e-13	72.8
Msa0656270	MtrunA17_Chr1g0212971	29.091	220	128	5	102	320	131	323	4.01e-13	72.4
Msa0656270	MtrunA17_Chr2g0331191	27.717	184	109	4	220	382	139	319	6.48e-13	72.0
Msa0656270	MtrunA17_Chr4g0030551	30.256	195	120	3	102	296	70	248	7.19e-13	71.6
Msa0656270	MtrunA17_Chr4g0030551	25.000	212	141	3	188	399	108	301	1.56e-12	70.5
Msa0656270	MtrunA17_Chr2g0327711	24.823	282	175	9	106	382	31	280	7.55e-13	71.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0656270	AT3G01750.2	49.310	580	265	9	1	559	1	572	0.0	535
Msa0656270	AT3G01750.1	49.310	580	265	9	1	559	1	572	0.0	535
Msa0656270	AT3G04140.1	43.750	672	323	17	1	650	1	639	1.68e-160	476
Msa0656270	AT1G07710.2	31.163	215	127	7	98	311	99	293	6.51e-15	78.6
Msa0656270	AT1G07710.2	25.887	282	174	9	105	382	30	280	3.78e-13	72.8
Msa0656270	AT1G07710.2	25.688	218	145	4	188	405	69	269	1.47e-11	67.8
Msa0656270	AT1G07710.1	31.163	215	127	7	98	311	99	293	6.51e-15	78.6
Msa0656270	AT1G07710.1	25.887	282	174	9	105	382	30	280	3.78e-13	72.8
Msa0656270	AT1G07710.1	25.688	218	145	4	188	405	69	269	1.47e-11	67.8
Msa0656270	AT5G02620.4	26.154	195	126	4	188	382	94	270	1.63e-12	70.9

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Find 120 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCGTCATGGTATTGG+AGG	0.532617	4_3:-65536870	Msa0656270:CDS
AAAAGTGTCTCCATTGTGAT+TGG	0.439400	4_3:+65537271	None:intergenic
AAACAAAACTACAACTGTTG+TGG	0.575593	4_3:+65539274	None:intergenic
AAATGTTACTACTGGTATCA+TGG	0.489413	4_3:-65536146	Msa0656270:three_prime_UTR
AACCAGCCAGCAATTTGTTT+TGG	0.335313	4_3:-65539217	Msa0656270:five_prime_UTR
AACGGACCAATAGATGGTGG+GGG	0.644986	4_3:-65536321	Msa0656270:CDS
AAGAATTTCCAATCTCATTA+AGG	0.276743	4_3:-65536557	Msa0656270:CDS
AAGGTTCATTAACCGTCTCG+CGG	0.699125	4_3:+65536677	None:intergenic
AATTCAGAAGATCTTGATCT+TGG	0.413086	4_3:+65536975	None:intergenic
ACAAAAGAACACTATCTATA+AGG	0.350958	4_3:-65536500	Msa0656270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAACTACAACTGTTG+TGG	+	chr4_3:65535948-65535967	None:intergenic	30.0%
GTCCAAAAGTTATCAAAAAG+TGG	+	chr4_3:65536127-65536146	None:intergenic	30.0%
TCAACAAAGTTGTCATCAAA+TGG	-	chr4_3:65536245-65536264	Msa0656270:CDS	30.0%
GTTGAAGAAACAAAGTAAAG+TGG	+	chr4_3:65536432-65536451	None:intergenic	30.0%
TTCTTCAACAGTGATTTGAA+TGG	-	chr4_3:65536443-65536462	Msa0656270:CDS	30.0%
TGAGAAGATTTGTATCATGA+TGG	+	chr4_3:65536581-65536600	None:intergenic	30.0%
AGATTGTGGTATTGTTGAAT+TGG	-	chr4_3:65536953-65536972	Msa0656270:CDS	30.0%
GACAAAATCATATGGTTTCT+AGG	+	chr4_3:65537453-65537472	None:intergenic	30.0%
AATAATCTGGGAATAAAAGG+AGG	-	chr4_3:65537708-65537727	Msa0656270:intron	30.0%
ACAAAGTTAACCAATCACAA+TGG	-	chr4_3:65537938-65537957	Msa0656270:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	65535942	65539299	65535942	ID=Msa0656270;Name=Msa0656270
chr4_3	mRNA	65535942	65539299	65535942	ID=Msa0656270-mRNA-1;Parent=Msa0656270;Name=Msa0656270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=129\|1\|1\|1\|0.5\|0.33\|3\|225\|659
chr4_3	exon	65535942	65537441	65535942	ID=Msa0656270-mRNA-1:exon:18610;Parent=Msa0656270-mRNA-1
chr4_3	exon	65538075	65538787	65538075	ID=Msa0656270-mRNA-1:exon:18609;Parent=Msa0656270-mRNA-1
chr4_3	exon	65539179	65539299	65539179	ID=Msa0656270-mRNA-1:exon:18608;Parent=Msa0656270-mRNA-1
chr4_3	five_prime_UTR	65539179	65539299	65539179	ID=Msa0656270-mRNA-1:five_prime_utr;Parent=Msa0656270-mRNA-1
chr4_3	five_prime_UTR	65538780	65538787	65538780	ID=Msa0656270-mRNA-1:five_prime_utr;Parent=Msa0656270-mRNA-1
chr4_3	CDS	65538075	65538779	65538075	ID=Msa0656270-mRNA-1:cds;Parent=Msa0656270-mRNA-1
chr4_3	CDS	65536167	65537441	65536167	ID=Msa0656270-mRNA-1:cds;Parent=Msa0656270-mRNA-1
chr4_3	three_prime_UTR	65535942	65536166	65535942	ID=Msa0656270-mRNA-1:three_prime_utr;Parent=Msa0656270-mRNA-1

Gene Sequence

>Msa0656270

ATGGCACCTTCTTACTTTCCTCTACGTTGGGAGAGCACAGGAGACCAATGGTGGTATGCAACACCTATTGATTTAGCAGCTGCAAATGGTCTCTATGATTTAGTAGCTGAGCTTCTCCATCATGATACAAATCTTCTCATTAAGCTCACTTCTCTTTGTCGAATTCGTCGACTAGAAACTGTGTGGGATGATGAAGCTCAGTTTGAAGATGTTGCAAAGTGTAGGTCTCATGTTGCAAAGAAACTTCTGCTTGAGTGTGAAGAAACAGCAACAGGAACAAACTCTCTCATTCGTGGTGGATATGGTGGATGGCTTTTGTATACTGCTGCTTCTGCTGGTGATTTGGAGTTTGTTTATGAATTGTTGAGAAGGGATTCTTTGTTGGTTTTTGGTGAAGGAGAGTATGGTGTTACTGATATGCTTTATGCTGCAGCTAGGAGTAAGAATTCTGAGGTATTCAACATGATTCTTGATTTTGCTCTCTTGGGAAAAGATTGTGGTATTGTTGAATTGGATGAAGGTGTTGGTGGTGGAGTTTTCAAGAGGGAGATAGTGAATAGGGCTATTCATGCTGCTGCTAGAGGAGGGAATTGGGAAATACTTCAGAAGCAGCTTCTTTTAGCAAGTGCTTCTCAGATTTTATATTATAGAGATGTTCAAGGATGCACTGTTTTGCATTCAGCAGCTGGAAGAGGCCAGGTTGAGGTGGTTAGAAATCTAATTGCATCGTCGCCTGATATTATAAACTCTACTGATGCACAAGGTAATGCCGCATTACATGTGGCTTCTTACAGAGGTTACCTTCATGTGGTAGAGATTCTAATTCAAGCATCTCTCTCACTAACAAAGTTAACCAATCACAATGGAGACACTTTTCTTCATATGGCAATGTATGGTTTCACAAATCCTGGTTTCTGCAGACTAGACAAGCACACTGAGCTCATGAATGAGTTATTACTAACCGAAAAGGTTGCGAACATAAAGGACATAATCAATGTCAAGAACAATGTTGGGAGAACAGCAATTCATGTAGCTGTGATTCATGATGTCAAGTGTGATGTACTTGAATCAATTATGTCTGTTGCATCAATCGATCTTAACATTCGCGACGCAGATGGAATGACACCTCTTGATTATTTGAAAAAAAGACCAAGATCAAGATCTTCTGAATTATTAATCAAGAAATTAATTTCATCTGTAAGTTTCTATAATCGTGAAGATTATATGACAAGAAACACAATTGTGACTCATTTGAAAACTCGTCATGGTATTGGAGGTAGTCCCGGAACTTCATTTAGAATATCAGATTCTAAGATACTCTTACACACATGCAATGAAAATGATCAAGCAGGTGTAGAATCAAATTCATGCTCAATTGAAGTAGACAGTAATTATGAGTCAGCTGAAAATTCCTCATGTAACAGCAAGACTAGTGGTGTTAATTGGGCCGCGAGACGGTTAATGAACCTTCTCAAGTGGCGTAGAAGAAGAGAGACAAAAGAAACCTTAGAATTTGAAGACGATGATTCTGTTAATAATTCTGTAAGTTCAAGGAAAAATGATTTGGAAGAATTTCCAATCTCATTAAGGCAAAGATACTCAAAACAGTGCTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACTTTACTTCCAACTCCATCTGCAAAAAAATATTTCACTGCAGGCCTAATGCAAGGTGTAATTAAGGTAAAGACACAAAAAGAAGGGTCTAATTTGTCTCATTCTTCAAACAATAAGCACAAACATGTTGATACACTGGGACTGCCCTCTTGCTCTAACGGACCAATAGATGGTGGGGGTACCCAGCAGTTGAACTATAAGGAGAGAAACTATAATAAGAAATTGATGAACAAGTATTTTTCTTTTGGAGCACAAGGGCAGGCTTTGGAAGATGCAAACACTTGCTCAATGTCAAATCACAGTTCTAAGTGTTTCAGTTATTTCGTTGCATAA

Protein sequence

>Msa0656270

MAPSYFPLRWESTGDQWWYATPIDLAAANGLYDLVAELLHHDTNLLIKLTSLCRIRRLETVWDDEAQFEDVAKCRSHVAKKLLLECEETATGTNSLIRGGYGGWLLYTAASAGDLEFVYELLRRDSLLVFGEGEYGVTDMLYAAARSKNSEVFNMILDFALLGKDCGIVELDEGVGGGVFKREIVNRAIHAAARGGNWEILQKQLLLASASQILYYRDVQGCTVLHSAAGRGQVEVVRNLIASSPDIINSTDAQGNAALHVASYRGYLHVVEILIQASLSLTKLTNHNGDTFLHMAMYGFTNPGFCRLDKHTELMNELLLTEKVANIKDIINVKNNVGRTAIHVAVIHDVKCDVLESIMSVASIDLNIRDADGMTPLDYLKKRPRSRSSELLIKKLISSVSFYNREDYMTRNTIVTHLKTRHGIGGSPGTSFRISDSKILLHTCNENDQAGVESNSCSIEVDSNYESAENSSCNSKTSGVNWAARRLMNLLKWRRRRETKETLEFEDDDSVNNSVSSRKNDLEEFPISLRQRYSKQCSLPNNKRTLSIRTLLPTPSAKKYFTAGLMQGVIKVKTQKEGSNLSHSSNNKHKHVDTLGLPSCSNGPIDGGGTQQLNYKERNYNKKLMNKYFSFGAQGQALEDANTCSMSNHSSKCFSYFVA*