AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0700070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700070 MtrunA17_Chr8g0376971 95.000 660 32 1 1 659 1 660 0.0 1305
Msa0700070 MtrunA17_Chr3g0122941 58.285 688 234 19 1 658 1 665 0.0 734
Msa0700070 MtrunA17_Chr6g0458951 48.571 665 303 17 1 635 1 656 0.0 543
Msa0700070 MtrunA17_Chr7g0276681 31.500 200 107 6 211 382 98 295 7.66e-17 84.3
Msa0700070 MtrunA17_Chr7g0263471 29.293 198 122 5 189 386 162 341 2.93e-13 72.8
Msa0700070 MtrunA17_Chr7g0263471 27.652 264 158 11 133 385 65 306 6.08e-11 65.5
Msa0700070 MtrunA17_Chr2g0331191 27.717 184 109 4 220 382 139 319 5.04e-13 72.4
Msa0700070 MtrunA17_Chr4g0030551 30.256 195 120 3 102 296 70 248 5.89e-13 72.0
Msa0700070 MtrunA17_Chr4g0030551 24.528 212 142 3 188 399 108 301 1.13e-11 67.8
Msa0700070 MtrunA17_Chr1g0212971 29.091 220 128 5 102 320 131 323 7.29e-13 71.6
Msa0700070 MtrunA17_Chr7g0263421 28.796 191 118 4 106 295 53 226 1.16e-12 70.9
Msa0700070 MtrunA17_Chr2g0327711 24.823 282 175 9 106 382 31 280 1.50e-12 70.5
Msa0700070 MtrunA17_Chr2g0327711 27.957 186 116 4 221 405 101 269 2.24e-12 70.1
Msa0700070 MtrunA17_Chr1g0161231 26.776 183 116 4 212 393 82 247 4.84e-11 65.9
Msa0700070 MtrunA17_Chr5g0409271 31.707 164 92 6 189 352 15 158 4.94e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700070 AT3G01750.2 49.310 580 265 9 1 559 1 572 0.0 536
Msa0700070 AT3G01750.1 49.310 580 265 9 1 559 1 572 0.0 536
Msa0700070 AT3G04140.1 43.750 672 323 17 1 650 1 639 1.34e-160 477
Msa0700070 AT1G07710.2 30.698 215 128 7 98 311 99 293 4.54e-14 75.9
Msa0700070 AT1G07710.2 25.887 282 174 9 105 382 30 280 7.87e-13 72.0
Msa0700070 AT1G07710.2 25.688 218 145 4 188 405 69 269 9.66e-12 68.6
Msa0700070 AT1G07710.1 30.698 215 128 7 98 311 99 293 4.54e-14 75.9
Msa0700070 AT1G07710.1 25.887 282 174 9 105 382 30 280 7.87e-13 72.0
Msa0700070 AT1G07710.1 25.688 218 145 4 188 405 69 269 9.66e-12 68.6
Msa0700070 AT5G02620.4 27.551 196 122 5 188 382 94 270 2.41e-12 70.5
Msa0700070 AT5G02620.1 27.551 196 122 5 188 382 94 270 2.41e-12 70.5
Msa0700070 AT5G02620.3 27.551 196 122 5 188 382 94 270 2.41e-12 70.5
Msa0700070 AT2G31820.1 28.962 183 106 6 221 382 224 403 6.28e-12 69.3
Msa0700070 AT5G02620.5 30.625 160 92 4 188 346 94 235 2.42e-11 67.0
Msa0700070 AT5G02620.2 30.625 160 92 4 188 346 94 235 2.42e-11 67.0
Msa0700070 AT3G09550.1 26.606 218 134 5 102 319 143 334 6.57e-11 65.9
Msa0700070 AT3G09550.3 26.606 218 134 5 102 319 143 334 6.57e-11 65.9
Msa0700070 AT3G09550.2 26.606 218 134 5 102 319 150 341 6.69e-11 65.9

Find 120 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGACTAGTGGTGTTAAT+TGG 0.207448 4_4:-70942270 Msa0700070:CDS
AAGAATTTCCAATCTCATTA+AGG 0.276743 4_4:-70942126 Msa0700070:CDS
TGCTGCTTCTGCTGGTGATT+TGG 0.292656 4_4:-70944003 Msa0700070:CDS
ATCATCGTCTTCAAATTCTA+AGG 0.293118 4_4:+70942189 None:intergenic
TCTCTCATTCGTGGTGGATA+TGG 0.311166 4_4:-70944044 Msa0700070:CDS
TATCTTTGCCTTAATGAGAT+TGG 0.319231 4_4:+70942118 None:intergenic
CTGGCTGGTTGCAGGCTAAA+TGG 0.321880 4_4:+70944799 None:intergenic
CCTAATGCAAGGTGTAATTA+AGG 0.327932 4_4:-70942002 Msa0700070:CDS
ACAAATTGCTGGCTGGTTGC+AGG 0.333847 4_4:+70944791 None:intergenic
AACCAGCCAGCAATTTGTTT+TGG 0.335313 4_4:-70944786 Msa0700070:five_prime_UTR
TGATATTCTAAATGAAGTTC+CGG 0.337345 4_4:+70942411 None:intergenic
ACAAAAGAACACTATCTATA+AGG 0.350958 4_4:-70942069 Msa0700070:CDS
TTGAAAACTCGTCATGGTAT+TGG 0.358691 4_4:-70942442 Msa0700070:CDS
TCAGTAGAGTTTATAATATC+AGG 0.361249 4_4:+70942961 None:intergenic
CCTTAATTACACCTTGCATT+AGG 0.369020 4_4:+70942002 None:intergenic
AGATTGTGGTATTGTTGAAT+TGG 0.372361 4_4:-70943835 Msa0700070:CDS
CAAGAGGGAGATAGTGAATA+GGG 0.378021 4_4:-70943787 Msa0700070:CDS
TTGTATACTGCTGCTTCTGC+TGG 0.379152 4_4:-70944011 Msa0700070:CDS
TTTCTTCATATGGCAATGTA+TGG 0.383930 4_4:-70942820 Msa0700070:CDS
TTAATAATTCTGTAAGTTCA+AGG 0.385745 4_4:-70942162 Msa0700070:CDS
CTGCTGCTAGAGGAGGGAAT+TGG 0.395808 4_4:-70943755 Msa0700070:CDS
CTTGTACTTCACTGTTTACA+AGG 0.398911 4_4:-70944747 Msa0700070:intron
TCTCCTTATAGTTCAACTGC+TGG 0.409261 4_4:+70941864 None:intergenic
TGCTGCTAGAGGAGGGAATT+GGG 0.409718 4_4:-70943754 Msa0700070:CDS
GTTGAGAAGGGATTCTTTGT+TGG 0.411093 4_4:-70943964 Msa0700070:CDS
AATTCAGAAGATCTTGATCT+TGG 0.413086 4_4:+70942544 None:intergenic
TTCTTACTTTCCTCTACGTT+GGG 0.414168 4_4:-70944318 Msa0700070:CDS
TACCCAGCAGTTGAACTATA+AGG 0.415427 4_4:-70941867 Msa0700070:CDS
TGGAGCACAAGGGCAGGCTT+TGG 0.420864 4_4:-70941801 Msa0700070:CDS
CAAGACTAGTGGTGTTAATT+GGG 0.421578 4_4:-70942269 Msa0700070:CDS
TTTGCAGCTGCTAAATCAAT+AGG 0.426019 4_4:+70944263 None:intergenic
ATGTATGGTTTCACAAATCC+TGG 0.427463 4_4:-70942805 Msa0700070:CDS
ATCAATGTCAAGAACAATGT+TGG 0.432252 4_4:-70942703 Msa0700070:CDS
TCAAGAGGGAGATAGTGAAT+AGG 0.438387 4_4:-70943788 Msa0700070:CDS
AAAAGTGTCTCCATTGTGAT+TGG 0.439400 4_4:+70942840 None:intergenic
TAGTAGCCAAAACAAATTGC+TGG 0.441988 4_4:+70944780 None:intergenic
GATATTCTAAATGAAGTTCC+GGG 0.452704 4_4:+70942412 None:intergenic
TGCTCTAACGGACCAATAGA+TGG 0.459067 4_4:-70941896 Msa0700070:CDS
CGTTGCATAAATGTTACTAC+TGG 0.459987 4_4:-70941723 Msa0700070:exon
CGAAAAGGTTGCGAACATAA+AGG 0.466998 4_4:-70942731 Msa0700070:CDS
TGAGAAGATTTGTATCATGA+TGG 0.469922 4_4:+70944210 None:intergenic
TGAGTTATTACTAACCGAAA+AGG 0.479208 4_4:-70942746 Msa0700070:CDS
CTTAACATTCGTGACGCAGA+TGG 0.488533 4_4:-70942598 Msa0700070:CDS
AAATGTTACTACTGGTATCA+TGG 0.489413 4_4:-70941715 Msa0700070:three_prime_UTR
TTCTTCAACAGTGATTTGAA+TGG 0.490235 4_4:-70944345 Msa0700070:intron
TTGCATTCAGCAGCTGGAAG+AGG 0.493545 4_4:-70943654 Msa0700070:CDS
ATTGATTTAGCAGCTGCAAA+TGG 0.494631 4_4:-70944260 Msa0700070:CDS
CTCCTTATAGTTCAACTGCT+GGG 0.496758 4_4:+70941865 None:intergenic
TTATCTTATAGAGATGTTCA+AGG 0.496796 4_4:-70943687 Msa0700070:CDS
TCAATGTCAAGAACAATGTT+GGG 0.501046 4_4:-70942702 Msa0700070:CDS
TTCTTCTACGCCACTTGAGA+AGG 0.501910 4_4:+70942227 None:intergenic
TTGGATGAAGGTGTTGGTGG+TGG 0.504868 4_4:-70943816 Msa0700070:CDS
CTTCTTACTTTCCTCTACGT+TGG 0.504888 4_4:-70944319 Msa0700070:CDS
TGTTTATGAATTGTTGAGAA+GGG 0.505920 4_4:-70943976 Msa0700070:CDS
GGACTGCCCTCTTGCTCTAA+CGG 0.508812 4_4:-70941908 Msa0700070:CDS
GGTATTGTTGAATTGGATGA+AGG 0.511469 4_4:-70943828 Msa0700070:CDS
AGCTGGAAGAGGCCAGGTTG+AGG 0.513559 4_4:-70943643 Msa0700070:intron
GAGTGTGAAGAAACAGCAAC+AGG 0.514596 4_4:-70944074 Msa0700070:CDS
GCTCTCTTGGGAAAAGATTG+TGG 0.515816 4_4:-70943849 Msa0700070:CDS
TGGTGACTAGGAGATAGTTA+AGG 0.518448 4_4:+70944819 None:intergenic
CTACTGGTATCATGGTGGAT+TGG 0.523695 4_4:-70941707 Msa0700070:three_prime_UTR
CACAAACATGTTGATACACT+GGG 0.530524 4_4:-70941929 Msa0700070:CDS
CTCATTCGTGGTGGATATGG+TGG 0.531172 4_4:-70944041 Msa0700070:CDS
TTCAGCAGCTGGAAGAGGCC+AGG 0.531435 4_4:-70943649 Msa0700070:CDS
AAAACTCGTCATGGTATTGG+AGG 0.532617 4_4:-70942439 Msa0700070:CDS
CATGGTATTGGAGGTAGTCC+CGG 0.533373 4_4:-70942430 Msa0700070:CDS
GTTGAATTGGATGAAGGTGT+TGG 0.536043 4_4:-70943822 Msa0700070:CDS
GCACAAACATGTTGATACAC+TGG 0.536271 4_4:-70941930 Msa0700070:CDS
GTGTTAATTGGGCCGCGAGA+CGG 0.548204 4_4:-70942258 Msa0700070:CDS
AGTGCTTTGAATTGTAGCCT+TGG 0.552274 4_4:+70941549 None:intergenic
AGCCAAAACAAATTGCTGGC+TGG 0.555309 4_4:+70944784 None:intergenic
GAATTGGATGAAGGTGTTGG+TGG 0.556011 4_4:-70943819 Msa0700070:CDS
CCTCTACGTTGGGAGAGCAC+AGG 0.559069 4_4:-70944308 Msa0700070:CDS
TAGGTGTTGCATACCACCAT+TGG 0.559115 4_4:+70944282 None:intergenic
TTGTTTATGAATTGTTGAGA+AGG 0.562613 4_4:-70943977 Msa0700070:CDS
GCTATTCATGCTGCTGCTAG+AGG 0.565183 4_4:-70943765 Msa0700070:CDS
TGCAATGAAAATGATCAAGC+AGG 0.567272 4_4:-70942364 Msa0700070:CDS
GGAACAAACTCTCTCATTCG+TGG 0.569551 4_4:-70944053 Msa0700070:CDS
TTGTCTAGTCTGCAGAAACC+AGG 0.572724 4_4:+70942787 None:intergenic
AAACAAAACTACAACTGTTG+TGG 0.575593 4_4:+70944843 None:intergenic
TAACGGACCAATAGATGGTG+GGG 0.576593 4_4:-70941891 Msa0700070:CDS
CAACGTAGAGGAAAGTAAGA+AGG 0.582105 4_4:+70944320 None:intergenic
CTTGTAAACAGTGAAGTACA+AGG 0.582338 4_4:+70944748 None:intergenic
TATTGGTCCGTTAGAGCAAG+AGG 0.583336 4_4:+70941901 None:intergenic
TGTGAGTCCTTACCTCAACC+TGG 0.583391 4_4:+70943631 None:intergenic
ATTCATGCTGCTGCTAGAGG+AGG 0.586565 4_4:-70943762 Msa0700070:CDS
TTGCAGGCTAAATGGTGACT+AGG 0.591767 4_4:+70944807 None:intergenic
CTAACGGACCAATAGATGGT+GGG 0.592448 4_4:-70941892 Msa0700070:CDS
TGGTGGATTGGACAAAATCA+TGG 0.601523 4_4:-70941695 Msa0700070:three_prime_UTR
TTGAAGATGTTGCAAAGTGT+AGG 0.602447 4_4:-70944124 Msa0700070:CDS
ATAATGTTTGTTTAGTATCG+CGG 0.603308 4_4:+70941621 None:intergenic
TTACAGAGGTTACCTTCATG+TGG 0.604215 4_4:-70942905 Msa0700070:CDS
TTACATGTGGCTTCTTACAG+AGG 0.606656 4_4:-70942919 Msa0700070:CDS
TTCACTGCAGGCCTAATGCA+AGG 0.610079 4_4:-70942013 Msa0700070:CDS
TTCATGCTGCTGCTAGAGGA+GGG 0.615437 4_4:-70943761 Msa0700070:CDS
ACTCATTTGAAAACTCGTCA+TGG 0.623099 4_4:-70942448 Msa0700070:CDS
ATATGCTTTATGCTGCAGCT+AGG 0.623467 4_4:-70943911 Msa0700070:CDS
TTCGTGGTGGATATGGTGGA+TGG 0.624766 4_4:-70944037 Msa0700070:CDS
TTAGAATCTCTACCACATGA+AGG 0.626407 4_4:+70942893 None:intergenic
ATATAGAAACTAATAAGCCA+AGG 0.626561 4_4:-70941566 Msa0700070:three_prime_UTR
GGGAGAGCACAGGAGACCAA+TGG 0.629721 4_4:-70944298 Msa0700070:CDS
TCTAACGGACCAATAGATGG+TGG 0.643080 4_4:-70941893 Msa0700070:CDS
AGCTAGGAGTAAGAATTCTG+AGG 0.643118 4_4:-70943895 Msa0700070:CDS
AGGTAATGCCGCATTACATG+TGG 0.644420 4_4:-70942932 Msa0700070:CDS
AACGGACCAATAGATGGTGG+GGG 0.644986 4_4:-70941890 Msa0700070:CDS
ACTAGTCTTGCTGTTACATG+AGG 0.645032 4_4:+70942282 None:intergenic
TCATGTAACAGCAAGACTAG+TGG 0.650511 4_4:-70942280 Msa0700070:CDS
GGTTAATGAACCTTCTCAAG+TGG 0.653219 4_4:-70942237 Msa0700070:CDS
TCGTCGACTAGAAACTGTGT+GGG 0.654713 4_4:-70944162 Msa0700070:CDS
GTAAGAAGCCACATGTAATG+CGG 0.659012 4_4:+70942924 None:intergenic
CCTGTGCTCTCCCAACGTAG+AGG 0.659563 4_4:+70944308 None:intergenic
ACAAAGTTAACCAATCACAA+TGG 0.661701 4_4:-70942850 Msa0700070:CDS
AGAGCACAGGAGACCAATGG+TGG 0.668331 4_4:-70944295 Msa0700070:CDS
ACAAACTCTCTCATTCGTGG+TGG 0.676010 4_4:-70944050 Msa0700070:CDS
TTCGTCGACTAGAAACTGTG+TGG 0.676029 4_4:-70944163 Msa0700070:CDS
ATAAACTCTACTGATGCACA+AGG 0.678669 4_4:-70942952 Msa0700070:CDS
ATTGGTCCGTTAGAGCAAGA+GGG 0.692608 4_4:+70941902 None:intergenic
TGTTACTACTGGTATCATGG+TGG 0.697794 4_4:-70941712 Msa0700070:three_prime_UTR
AAGGTTCATTAACCGTCTCG+CGG 0.699125 4_4:+70942246 None:intergenic
TGGATTGGACAAAATCATGG+TGG 0.816536 4_4:-70941692 Msa0700070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTTGTTAATTTCAG+TGG - chr4_4:70943168-70943187 Msa0700070:intron 15.0%
!! AATTAAATAATTAATGATGC+AGG - chr4_4:70943346-70943365 Msa0700070:intron 15.0%
!! AATAATGAGATGAAAATTCT+AGG + chr4_4:70941647-70941666 None:intergenic 20.0%
!!! TTGTTTTTTTCACTTCTTAT+TGG + chr4_4:70941788-70941807 None:intergenic 20.0%
!! AATAAGAAGTGAAAAAAACA+AGG - chr4_4:70941787-70941806 Msa0700070:CDS 20.0%
!! TATGAAAAAGTGAAAGTTAT+TGG + chr4_4:70941870-70941889 None:intergenic 20.0%
!! ATATTCTCCTAATAATTGAA+TGG - chr4_4:70941932-70941951 Msa0700070:CDS 20.0%
!! TGAAAAACCATTCAATTATT+AGG + chr4_4:70941942-70941961 None:intergenic 20.0%
!!! ATTTTAGAGACAAAATCATA+TGG + chr4_4:70943029-70943048 None:intergenic 20.0%
!! TATAAAATTGTCCCTAAAAA+TGG + chr4_4:70943152-70943171 None:intergenic 20.0%
!! ACAGTTAATACTAAATAATC+TGG - chr4_4:70943263-70943282 Msa0700070:intron 20.0%
!! CAGTTAATACTAAATAATCT+GGG - chr4_4:70943264-70943283 Msa0700070:intron 20.0%
!!! CTTTTTTTCAAATAATCAAG+AGG + chr4_4:70943791-70943810 None:intergenic 20.0%
!! TTAATAATTCTGTAAGTTCA+AGG - chr4_4:70944194-70944213 Msa0700070:CDS 20.0%
!!! ATGAACAAGTATTTTTCTTT+TGG - chr4_4:70944535-70944554 Msa0700070:intron 20.0%
! TCCAAAAGTTGTCAAAAAAT+GGG + chr4_4:70941694-70941713 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr4_4:70941775-70941794 None:intergenic 25.0%
! CTTTATGTTTATTCTTCTCT+TGG + chr4_4:70941894-70941913 None:intergenic 25.0%
! TTGTTTATGAATTGTTGAGA+AGG - chr4_4:70942379-70942398 Msa0700070:CDS 25.0%
! TGTTTATGAATTGTTGAGAA+GGG - chr4_4:70942380-70942399 Msa0700070:CDS 25.0%
! TTATCTTATAGAGATGTTCA+AGG - chr4_4:70942669-70942688 Msa0700070:CDS 25.0%
! ACAAAATCATATGGTTTCTA+GGG + chr4_4:70943020-70943039 None:intergenic 25.0%
! TGATCAACTTTATAATGTGA+TGG - chr4_4:70943119-70943138 Msa0700070:intron 25.0%
! GATCAACTTTATAATGTGAT+GGG - chr4_4:70943120-70943139 Msa0700070:intron 25.0%
! ATCAACTTTATAATGTGATG+GGG - chr4_4:70943121-70943140 Msa0700070:intron 25.0%
! CTAAATAATCTGGGAATAAA+AGG - chr4_4:70943273-70943292 Msa0700070:intron 25.0%
! TAAATAATTAATGATGCAGG+TGG - chr4_4:70943349-70943368 Msa0700070:intron 25.0%
! TCAGTAGAGTTTATAATATC+AGG + chr4_4:70943398-70943417 None:intergenic 25.0%
! TGATATTCTAAATGAAGTTC+CGG + chr4_4:70943948-70943967 None:intergenic 25.0%
! AAGTTCAAGGAAAAATGATT+TGG - chr4_4:70944207-70944226 Msa0700070:CDS 25.0%
! AAGAATTTCCAATCTCATTA+AGG - chr4_4:70944230-70944249 Msa0700070:CDS 25.0%
! ACAAAAGAACACTATCTATA+AGG - chr4_4:70944287-70944306 Msa0700070:CDS 25.0%
!!! GTGAAATATTTTTTTGCAGA+TGG + chr4_4:70944328-70944347 None:intergenic 25.0%
!! TGATTTTGTTGAAACTATAG+TGG - chr4_4:70944692-70944711 Msa0700070:intron 25.0%
! ATAATGTTTGTTTAGTATCG+CGG + chr4_4:70944738-70944757 None:intergenic 25.0%
! ATATAGAAACTAATAAGCCA+AGG - chr4_4:70944790-70944809 Msa0700070:five_prime_UTR 25.0%
AAACAAAACTACAACTGTTG+TGG + chr4_4:70941516-70941535 None:intergenic 30.0%
! ATGAGATGAAAATTCTAGGA+AGG + chr4_4:70941643-70941662 None:intergenic 30.0%
!!! ACCCATTTTTTGACAACTTT+TGG - chr4_4:70941690-70941709 Msa0700070:three_prime_UTR 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG + chr4_4:70941695-70941714 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr4_4:70941762-70941781 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr4_4:70941813-70941832 Msa0700070:CDS 30.0%
GTTGAAGAAACAAAGTAAAG+TGG + chr4_4:70942000-70942019 None:intergenic 30.0%
TTCTTCAACAGTGATTTGAA+TGG - chr4_4:70942011-70942030 Msa0700070:CDS 30.0%
TGAGAAGATTTGTATCATGA+TGG + chr4_4:70942149-70942168 None:intergenic 30.0%
! ATTCTTGATTTTGCTCTCTT+GGG - chr4_4:70942495-70942514 Msa0700070:CDS 30.0%
AGATTGTGGTATTGTTGAAT+TGG - chr4_4:70942521-70942540 Msa0700070:CDS 30.0%
GACAAAATCATATGGTTTCT+AGG + chr4_4:70943021-70943040 None:intergenic 30.0%
!! TGTCTCTAAAATTGTAGAAC+CGG - chr4_4:70943037-70943056 Msa0700070:intron 30.0%
! GATCGAAGATTTTCAATTTC+AGG + chr4_4:70943075-70943094 None:intergenic 30.0%
!! ATTTTAGTCCCTCACTATTT+CGG + chr4_4:70943207-70943226 None:intergenic 30.0%
AATAATCTGGGAATAAAAGG+AGG - chr4_4:70943276-70943295 Msa0700070:intron 30.0%
ACAAAGTTAACCAATCACAA+TGG - chr4_4:70943506-70943525 Msa0700070:intron 30.0%
TTTCTTCATATGGCAATGTA+TGG - chr4_4:70943536-70943555 Msa0700070:intron 30.0%
TGAGTTATTACTAACCGAAA+AGG - chr4_4:70943610-70943629 Msa0700070:intron 30.0%
ATCAATGTCAAGAACAATGT+TGG - chr4_4:70943653-70943672 Msa0700070:CDS 30.0%
TCAATGTCAAGAACAATGTT+GGG - chr4_4:70943654-70943673 Msa0700070:CDS 30.0%
AATTCAGAAGATCTTGATCT+TGG + chr4_4:70943815-70943834 None:intergenic 30.0%
GATATTCTAAATGAAGTTCC+GGG + chr4_4:70943947-70943966 None:intergenic 30.0%
ATCATCGTCTTCAAATTCTA+AGG + chr4_4:70944170-70944189 None:intergenic 30.0%
TATCTTTGCCTTAATGAGAT+TGG + chr4_4:70944241-70944260 None:intergenic 30.0%
!!! GATAGTGTTCTTTTGTTGTT+TGG + chr4_4:70944283-70944302 None:intergenic 30.0%
!!! TATTTTTTTGCAGATGGAGT+TGG + chr4_4:70944322-70944341 None:intergenic 30.0%
GCAAAAAAATATTTCACTGC+AGG - chr4_4:70944331-70944350 Msa0700070:exon 30.0%
AAGGTAAAGACACAAAAAGA+AGG - chr4_4:70944373-70944392 Msa0700070:intron 30.0%
AGGTAAAGACACAAAAAGAA+GGG - chr4_4:70944374-70944393 Msa0700070:intron 30.0%
!!! TATTTTTCTTTTGGAGCACA+AGG - chr4_4:70944544-70944563 Msa0700070:intron 30.0%
!!! ATTTTTCTTTTGGAGCACAA+GGG - chr4_4:70944545-70944564 Msa0700070:intron 30.0%
AAATGTTACTACTGGTATCA+TGG - chr4_4:70944641-70944660 Msa0700070:intron 30.0%
TAGTAGCCAAAACAAATTGC+TGG + chr4_4:70941579-70941598 None:intergenic 35.0%
CTTGTAAACAGTGAAGTACA+AGG + chr4_4:70941611-70941630 None:intergenic 35.0%
CTTGTACTTCACTGTTTACA+AGG - chr4_4:70941609-70941628 Msa0700070:three_prime_UTR 35.0%
AGAGAGAAAAAGGAAGAGAA+AGG + chr4_4:70941752-70941771 None:intergenic 35.0%
TTCTTACTTTCCTCTACGTT+GGG - chr4_4:70942038-70942057 Msa0700070:CDS 35.0%
TTTGCAGCTGCTAAATCAAT+AGG + chr4_4:70942096-70942115 None:intergenic 35.0%
! ATTGATTTAGCAGCTGCAAA+TGG - chr4_4:70942096-70942115 Msa0700070:CDS 35.0%
TTGAAGATGTTGCAAAGTGT+AGG - chr4_4:70942232-70942251 Msa0700070:CDS 35.0%
!!! AGGGATTCTTTGTTGGTTTT+TGG - chr4_4:70942399-70942418 Msa0700070:CDS 35.0%
!!! TCTTTGTTGGTTTTTGGTGA+AGG - chr4_4:70942405-70942424 Msa0700070:CDS 35.0%
! GATTCTTGATTTTGCTCTCT+TGG - chr4_4:70942494-70942513 Msa0700070:CDS 35.0%
GGTATTGTTGAATTGGATGA+AGG - chr4_4:70942528-70942547 Msa0700070:CDS 35.0%
CTATGTCACATTCTAAACAC+CGG - chr4_4:70942945-70942964 Msa0700070:CDS 35.0%
ACTCAGATTAAAGACGTATC+CGG + chr4_4:70942967-70942986 None:intergenic 35.0%
TTTCAGGATCAAATTGTGTC+CGG + chr4_4:70943059-70943078 None:intergenic 35.0%
!! ATGGGGAGTTTCCATTTTTA+GGG - chr4_4:70943138-70943157 Msa0700070:intron 35.0%
ACTATTTCGGTAGAGCAATT+CGG + chr4_4:70943194-70943213 None:intergenic 35.0%
ATAAACTCTACTGATGCACA+AGG - chr4_4:70943404-70943423 Msa0700070:intron 35.0%
TTAGAATCTCTACCACATGA+AGG + chr4_4:70943466-70943485 None:intergenic 35.0%
!! AAAAGTGTCTCCATTGTGAT+TGG + chr4_4:70943519-70943538 None:intergenic 35.0%
! TGGAGACACTTTTCTTCATA+TGG - chr4_4:70943526-70943545 Msa0700070:intron 35.0%
ATGTATGGTTTCACAAATCC+TGG - chr4_4:70943551-70943570 Msa0700070:intron 35.0%
! CTTTATGTTCGCAACCTTTT+CGG + chr4_4:70943627-70943646 None:intergenic 35.0%
ACTCATTTGAAAACTCGTCA+TGG - chr4_4:70943908-70943927 Msa0700070:CDS 35.0%
TTGAAAACTCGTCATGGTAT+TGG - chr4_4:70943914-70943933 Msa0700070:CDS 35.0%
TGCAATGAAAATGATCAAGC+AGG - chr4_4:70943992-70944011 Msa0700070:CDS 35.0%
! CAAGACTAGTGGTGTTAATT+GGG - chr4_4:70944087-70944106 Msa0700070:CDS 35.0%
CCTTAATTACACCTTGCATT+AGG + chr4_4:70944357-70944376 None:intergenic 35.0%
CCTAATGCAAGGTGTAATTA+AGG - chr4_4:70944354-70944373 Msa0700070:intron 35.0%
CACAAACATGTTGATACACT+GGG - chr4_4:70944427-70944446 Msa0700070:intron 35.0%
CGTTGCATAAATGTTACTAC+TGG - chr4_4:70944633-70944652 Msa0700070:intron 35.0%
TGGTGACTAGGAGATAGTTA+AGG + chr4_4:70941540-70941559 None:intergenic 40.0%
!! AACCAGCCAGCAATTTGTTT+TGG - chr4_4:70941570-70941589 Msa0700070:three_prime_UTR 40.0%
CAACGTAGAGGAAAGTAAGA+AGG + chr4_4:70942039-70942058 None:intergenic 40.0%
CTTCTTACTTTCCTCTACGT+TGG - chr4_4:70942037-70942056 Msa0700070:CDS 40.0%
GTTGAGAAGGGATTCTTTGT+TGG - chr4_4:70942392-70942411 Msa0700070:CDS 40.0%
!!! GTTTTTGGTGAAGGAGAGTA+TGG - chr4_4:70942414-70942433 Msa0700070:CDS 40.0%
ATATGCTTTATGCTGCAGCT+AGG - chr4_4:70942445-70942464 Msa0700070:CDS 40.0%
AGCTAGGAGTAAGAATTCTG+AGG - chr4_4:70942461-70942480 Msa0700070:CDS 40.0%
! GTTGAATTGGATGAAGGTGT+TGG - chr4_4:70942534-70942553 Msa0700070:CDS 40.0%
TCAAGAGGGAGATAGTGAAT+AGG - chr4_4:70942568-70942587 Msa0700070:CDS 40.0%
CAAGAGGGAGATAGTGAATA+GGG - chr4_4:70942569-70942588 Msa0700070:CDS 40.0%
!! CTTGCTATGAAGTACTGACA+TGG - chr4_4:70942845-70942864 Msa0700070:CDS 40.0%
! TTTCTAGGGATCATACAAGC+AGG + chr4_4:70943006-70943025 None:intergenic 40.0%
!! GATGGGGAGTTTCCATTTTT+AGG - chr4_4:70943137-70943156 Msa0700070:intron 40.0%
ATTGCTCTACCGAAATAGTG+AGG - chr4_4:70943195-70943214 Msa0700070:intron 40.0%
TTGCTCTACCGAAATAGTGA+GGG - chr4_4:70943196-70943215 Msa0700070:intron 40.0%
GTAAGAAGCCACATGTAATG+CGG + chr4_4:70943435-70943454 None:intergenic 40.0%
TTACATGTGGCTTCTTACAG+AGG - chr4_4:70943437-70943456 Msa0700070:intron 40.0%
TTACAGAGGTTACCTTCATG+TGG - chr4_4:70943451-70943470 Msa0700070:intron 40.0%
CGAAAAGGTTGCGAACATAA+AGG - chr4_4:70943625-70943644 Msa0700070:intron 40.0%
! AAAACTCGTCATGGTATTGG+AGG - chr4_4:70943917-70943936 Msa0700070:CDS 40.0%
!! ACTAGTCTTGCTGTTACATG+AGG + chr4_4:70944077-70944096 None:intergenic 40.0%
TCATGTAACAGCAAGACTAG+TGG - chr4_4:70944076-70944095 Msa0700070:CDS 40.0%
! GCAAGACTAGTGGTGTTAAT+TGG - chr4_4:70944086-70944105 Msa0700070:CDS 40.0%
GGTTAATGAACCTTCTCAAG+TGG - chr4_4:70944119-70944138 Msa0700070:CDS 40.0%
GCACAAACATGTTGATACAC+TGG - chr4_4:70944426-70944445 Msa0700070:intron 40.0%
TACCCAGCAGTTGAACTATA+AGG - chr4_4:70944489-70944508 Msa0700070:intron 40.0%
CTCCTTATAGTTCAACTGCT+GGG + chr4_4:70944494-70944513 None:intergenic 40.0%
TCTCCTTATAGTTCAACTGC+TGG + chr4_4:70944495-70944514 None:intergenic 40.0%
TGTTACTACTGGTATCATGG+TGG - chr4_4:70944644-70944663 Msa0700070:intron 40.0%
!! TGGTGGATTGGACAAAATCA+TGG - chr4_4:70944661-70944680 Msa0700070:intron 40.0%
! TGGATTGGACAAAATCATGG+TGG - chr4_4:70944664-70944683 Msa0700070:intron 40.0%
! AGTGCTTTGAATTGTAGCCT+TGG + chr4_4:70944810-70944829 None:intergenic 40.0%
TTGCAGGCTAAATGGTGACT+AGG + chr4_4:70941552-70941571 None:intergenic 45.0%
AGCCAAAACAAATTGCTGGC+TGG + chr4_4:70941575-70941594 None:intergenic 45.0%
! TAGGTGTTGCATACCACCAT+TGG + chr4_4:70942077-70942096 None:intergenic 45.0%
! TTCGTCGACTAGAAACTGTG+TGG - chr4_4:70942193-70942212 Msa0700070:CDS 45.0%
! TCGTCGACTAGAAACTGTGT+GGG - chr4_4:70942194-70942213 Msa0700070:CDS 45.0%
GAGTGTGAAGAAACAGCAAC+AGG - chr4_4:70942282-70942301 Msa0700070:CDS 45.0%
GGAACAAACTCTCTCATTCG+TGG - chr4_4:70942303-70942322 Msa0700070:CDS 45.0%
ACAAACTCTCTCATTCGTGG+TGG - chr4_4:70942306-70942325 Msa0700070:CDS 45.0%
!! TCTCTCATTCGTGGTGGATA+TGG - chr4_4:70942312-70942331 Msa0700070:CDS 45.0%
! TTGTATACTGCTGCTTCTGC+TGG - chr4_4:70942345-70942364 Msa0700070:CDS 45.0%
GCTCTCTTGGGAAAAGATTG+TGG - chr4_4:70942507-70942526 Msa0700070:CDS 45.0%
!! GAATTGGATGAAGGTGTTGG+TGG - chr4_4:70942537-70942556 Msa0700070:CDS 45.0%
!!! TTGGTGGTGGAGTTTTCAAG+AGG - chr4_4:70942553-70942572 Msa0700070:CDS 45.0%
!!! TGGTGGTGGAGTTTTCAAGA+GGG - chr4_4:70942554-70942573 Msa0700070:CDS 45.0%
! ACTGTTTTGCATTCAGCAGC+TGG - chr4_4:70942696-70942715 Msa0700070:CDS 45.0%
GTCAGTACTTCATAGCAAGC+AGG + chr4_4:70942844-70942863 None:intergenic 45.0%
AGGTAATGCCGCATTACATG+TGG - chr4_4:70943424-70943443 Msa0700070:intron 45.0%
TTGTCTAGTCTGCAGAAACC+AGG + chr4_4:70943572-70943591 None:intergenic 45.0%
CTTAACATTCGTGACGCAGA+TGG - chr4_4:70943758-70943777 Msa0700070:CDS 45.0%
AAGGTTCATTAACCGTCTCG+CGG + chr4_4:70944113-70944132 None:intergenic 45.0%
TTCTTCTACGCCACTTGAGA+AGG + chr4_4:70944132-70944151 None:intergenic 45.0%
ATTGGTCCGTTAGAGCAAGA+GGG + chr4_4:70944457-70944476 None:intergenic 45.0%
TATTGGTCCGTTAGAGCAAG+AGG + chr4_4:70944458-70944477 None:intergenic 45.0%
! TGCTCTAACGGACCAATAGA+TGG - chr4_4:70944460-70944479 Msa0700070:intron 45.0%
! TCTAACGGACCAATAGATGG+TGG - chr4_4:70944463-70944482 Msa0700070:intron 45.0%
! CTAACGGACCAATAGATGGT+GGG - chr4_4:70944464-70944483 Msa0700070:intron 45.0%
! TAACGGACCAATAGATGGTG+GGG - chr4_4:70944465-70944484 Msa0700070:intron 45.0%
!! CTACTGGTATCATGGTGGAT+TGG - chr4_4:70944649-70944668 Msa0700070:intron 45.0%
! ACAAATTGCTGGCTGGTTGC+AGG + chr4_4:70941568-70941587 None:intergenic 50.0%
!! CTCATTCGTGGTGGATATGG+TGG - chr4_4:70942315-70942334 Msa0700070:CDS 50.0%
!! TTCGTGGTGGATATGGTGGA+TGG - chr4_4:70942319-70942338 Msa0700070:CDS 50.0%
! TGCTGCTTCTGCTGGTGATT+TGG - chr4_4:70942353-70942372 Msa0700070:CDS 50.0%
!! TTGGATGAAGGTGTTGGTGG+TGG - chr4_4:70942540-70942559 Msa0700070:CDS 50.0%
GCTATTCATGCTGCTGCTAG+AGG - chr4_4:70942591-70942610 Msa0700070:CDS 50.0%
ATTCATGCTGCTGCTAGAGG+AGG - chr4_4:70942594-70942613 Msa0700070:CDS 50.0%
TTCATGCTGCTGCTAGAGGA+GGG - chr4_4:70942595-70942614 Msa0700070:CDS 50.0%
TGCTGCTAGAGGAGGGAATT+GGG - chr4_4:70942602-70942621 Msa0700070:CDS 50.0%
TTGCATTCAGCAGCTGGAAG+AGG - chr4_4:70942702-70942721 Msa0700070:CDS 50.0%
TGTGAGTCCTTACCTCAACC+TGG + chr4_4:70942728-70942747 None:intergenic 50.0%
GGTTGAGGTAAGGACTCACA+TGG - chr4_4:70942728-70942747 Msa0700070:CDS 50.0%
! CATGGTATTGGAGGTAGTCC+CGG - chr4_4:70943926-70943945 Msa0700070:CDS 50.0%
TTCACTGCAGGCCTAATGCA+AGG - chr4_4:70944343-70944362 Msa0700070:intron 50.0%
! AACGGACCAATAGATGGTGG+GGG - chr4_4:70944466-70944485 Msa0700070:intron 50.0%
!!! TTCTTTTGGAGCACAAGGGC+AGG - chr4_4:70944549-70944568 Msa0700070:intron 50.0%
! CTGGCTGGTTGCAGGCTAAA+TGG + chr4_4:70941560-70941579 None:intergenic 55.0%
AGAGCACAGGAGACCAATGG+TGG - chr4_4:70942061-70942080 Msa0700070:CDS 55.0%
CTGCTGCTAGAGGAGGGAAT+TGG - chr4_4:70942601-70942620 Msa0700070:CDS 55.0%
! GAAGAGGCCAGGTTGAGGTA+AGG - chr4_4:70942718-70942737 Msa0700070:CDS 55.0%
GTGTTAATTGGGCCGCGAGA+CGG - chr4_4:70944098-70944117 Msa0700070:CDS 55.0%
GGACTGCCCTCTTGCTCTAA+CGG - chr4_4:70944448-70944467 Msa0700070:intron 55.0%
TGGGTACCCCCACCATCTAT+TGG + chr4_4:70944475-70944494 None:intergenic 55.0%
CCTGTGCTCTCCCAACGTAG+AGG + chr4_4:70942051-70942070 None:intergenic 60.0%
! CCTCTACGTTGGGAGAGCAC+AGG - chr4_4:70942048-70942067 Msa0700070:CDS 60.0%
! GGGAGAGCACAGGAGACCAA+TGG - chr4_4:70942058-70942077 Msa0700070:CDS 60.0%
TTCAGCAGCTGGAAGAGGCC+AGG - chr4_4:70942707-70942726 Msa0700070:CDS 60.0%
AGCTGGAAGAGGCCAGGTTG+AGG - chr4_4:70942713-70942732 Msa0700070:CDS 60.0%
TGGAGCACAAGGGCAGGCTT+TGG - chr4_4:70944555-70944574 Msa0700070:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 70941510 70944868 70941510 ID=Msa0700070;Name=Msa0700070
chr4_4 mRNA 70941510 70944868 70941510 ID=Msa0700070-mRNA-1;Parent=Msa0700070;Name=Msa0700070-mRNA-1;_AED=0.09;_eAED=0.09;_QI=129|1|1|1|0.5|0.33|3|226|659
chr4_4 exon 70941510 70943010 70941510 ID=Msa0700070-mRNA-1:exon:21537;Parent=Msa0700070-mRNA-1
chr4_4 exon 70943644 70944356 70943644 ID=Msa0700070-mRNA-1:exon:21536;Parent=Msa0700070-mRNA-1
chr4_4 exon 70944748 70944868 70944748 ID=Msa0700070-mRNA-1:exon:21535;Parent=Msa0700070-mRNA-1
chr4_4 five_prime_UTR 70944748 70944868 70944748 ID=Msa0700070-mRNA-1:five_prime_utr;Parent=Msa0700070-mRNA-1
chr4_4 five_prime_UTR 70944349 70944356 70944349 ID=Msa0700070-mRNA-1:five_prime_utr;Parent=Msa0700070-mRNA-1
chr4_4 CDS 70943644 70944348 70943644 ID=Msa0700070-mRNA-1:cds;Parent=Msa0700070-mRNA-1
chr4_4 CDS 70941736 70943010 70941736 ID=Msa0700070-mRNA-1:cds;Parent=Msa0700070-mRNA-1
chr4_4 three_prime_UTR 70941510 70941735 70941510 ID=Msa0700070-mRNA-1:three_prime_utr;Parent=Msa0700070-mRNA-1
Gene Sequence

>Msa0700070

ATGGCACCTTCTTACTTTCCTCTACGTTGGGAGAGCACAGGAGACCAATGGTGGTATGCAACACCTATTGATTTAGCAGCTGCAAATGGTCTCTATGATTTAGTAGCTGAGCTTCTCCATCATGATACAAATCTTCTCATTAAGCTCACTTCTCTTTGTCGAATTCGTCGACTAGAAACTGTGTGGGATGATGAAGCTCAGTTTGAAGATGTTGCAAAGTGTAGGTCTCATGTTGCAAAGAAACTTCTGCTTGAGTGTGAAGAAACAGCAACAGGAACAAACTCTCTCATTCGTGGTGGATATGGTGGATGGCTTTTGTATACTGCTGCTTCTGCTGGTGATTTGGAGTTTGTTTATGAATTGTTGAGAAGGGATTCTTTGTTGGTTTTTGGTGAAGGAGAGTATGGTGTTACTGATATGCTTTATGCTGCAGCTAGGAGTAAGAATTCTGAGGTATTCAACATGATTCTTGATTTTGCTCTCTTGGGAAAAGATTGTGGTATTGTTGAATTGGATGAAGGTGTTGGTGGTGGAGTTTTCAAGAGGGAGATAGTGAATAGGGCTATTCATGCTGCTGCTAGAGGAGGGAATTGGGAAATACTTCAGAAGCAGCTTCTTTTAGTAAGTGCTTCTCAGATTTTATCTTATAGAGATGTTCAAGGATGCACTGTTTTGCATTCAGCAGCTGGAAGAGGCCAGGTTGAGGTGGTTAGAAATCTAATTGCATCGTCGCCTGATATTATAAACTCTACTGATGCACAAGGTAATGCCGCATTACATGTGGCTTCTTACAGAGGTTACCTTCATGTGGTAGAGATTCTAATTCAAGCATCTCTCTCACTAACAAAGTTAACCAATCACAATGGAGACACTTTTCTTCATATGGCAATGTATGGTTTCACAAATCCTGGTTTCTGCAGACTAGACAAGCACACTGAGCTCATGAATGAGTTATTACTAACCGAAAAGGTTGCGAACATAAAGGACATAATCAATGTCAAGAACAATGTTGGGAGAACAGCAATTCATGTAGCTGTGATTCATGATGTCAAGTGTGATGTACTTGAATCAATGATGTCTGTTGCATCAATCGATCTTAACATTCGTGACGCAGATGGAATGACACCTCTTGATTATTTGAAAAAAAGACCAAGATCAAGATCTTCTGAATTATTAATCAAGAAATTAATTTCATCTGTAAGTTTCTATAATCGTGAAGATTATATGACAAGAAACACAATTGTGACTCATTTGAAAACTCGTCATGGTATTGGAGGTAGTCCCGGAACTTCATTTAGAATATCAGATTCTAAGATACTCTTACACACATGCAATGAAAATGATCAAGCAGGTGTAGAATCAAATTCATGCTCAATTGAAGTAGACAGTAATTATGAGTCAGCTGAAAATTCCTCATGTAACAGCAAGACTAGTGGTGTTAATTGGGCCGCGAGACGGTTAATGAACCTTCTCAAGTGGCGTAGAAGAAGAGAGACAAAAGAAACCTTAGAATTTGAAGACGATGATTCTGTTAATAATTCTGTAAGTTCAAGGAAAAATGATTTGGAAGAATTTCCAATCTCATTAAGGCAAAGATACTCAAAACAGTGCTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACTTTACTTCCAACTCCATCTGCAAAAAAATATTTCACTGCAGGCCTAATGCAAGGTGTAATTAAGGTAAAGACACAAAAAGAAGGGTCTAATTTGTCTCATTCTTCAAACAATAAGCACAAACATGTTGATACACTGGGACTGCCCTCTTGCTCTAACGGACCAATAGATGGTGGGGGTACCCAGCAGTTGAACTATAAGGAGAGAAACTATAATAAGAAATTGATGAACAAGTATTTTTCTTTTGGAGCACAAGGGCAGGCTTTGGAAGATGCAAACACTTGCTCAATGTCAAATCACAGTTCTAAGTGTTTCAGTTATTTCGTTGCATAA

Protein sequence

>Msa0700070

MAPSYFPLRWESTGDQWWYATPIDLAAANGLYDLVAELLHHDTNLLIKLTSLCRIRRLETVWDDEAQFEDVAKCRSHVAKKLLLECEETATGTNSLIRGGYGGWLLYTAASAGDLEFVYELLRRDSLLVFGEGEYGVTDMLYAAARSKNSEVFNMILDFALLGKDCGIVELDEGVGGGVFKREIVNRAIHAAARGGNWEILQKQLLLVSASQILSYRDVQGCTVLHSAAGRGQVEVVRNLIASSPDIINSTDAQGNAALHVASYRGYLHVVEILIQASLSLTKLTNHNGDTFLHMAMYGFTNPGFCRLDKHTELMNELLLTEKVANIKDIINVKNNVGRTAIHVAVIHDVKCDVLESMMSVASIDLNIRDADGMTPLDYLKKRPRSRSSELLIKKLISSVSFYNREDYMTRNTIVTHLKTRHGIGGSPGTSFRISDSKILLHTCNENDQAGVESNSCSIEVDSNYESAENSSCNSKTSGVNWAARRLMNLLKWRRRRETKETLEFEDDDSVNNSVSSRKNDLEEFPISLRQRYSKQCSLPNNKRTLSIRTLLPTPSAKKYFTAGLMQGVIKVKTQKEGSNLSHSSNNKHKHVDTLGLPSCSNGPIDGGGTQQLNYKERNYNKKLMNKYFSFGAQGQALEDANTCSMSNHSSKCFSYFVA*