AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576600 MtrunA17_Chr8g0378531 94.471 416 22 1 1 415 73 488 0.0 773
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576600 AT1G55280.1 47.355 397 180 10 20 408 14 389 1.06e-107 323
Msa0576600 AT1G55280.2 47.355 397 180 10 20 408 59 434 3.43e-107 323

Find 98 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAAGACTTGAGGCTATT+TGG 0.152892 4_1:-80677884 Msa0576600:CDS
AAAATTAGTATCAGAGAATT+TGG 0.170887 4_1:+80679190 None:intergenic
TGCAATGCAATTCGTGCTTT+TGG 0.220214 4_1:-80679376 None:intergenic
ATAAATCCAAATCTTTATTC+AGG 0.239984 4_1:-80678112 Msa0576600:CDS
GTAAGTGTGGCATTGACTTT+AGG 0.270375 4_1:-80676499 Msa0576600:CDS
CTTGACCCTGAATAAAGATT+TGG 0.283207 4_1:+80678106 None:intergenic
ATTTGGGTCGGTGTTGATTC+AGG 0.287536 4_1:-80677867 Msa0576600:intron
AACTTCTGCCCAAGTGTTAT+AGG 0.288096 4_1:+80676346 None:intergenic
ATTCCAACTATGATATCTTT+TGG 0.298685 4_1:+80676418 None:intergenic
ATTCATCAACAGAACCTCTT+TGG 0.299534 4_1:+80677928 None:intergenic
TAAGTGTGGCATTGACTTTA+GGG 0.316132 4_1:-80676498 Msa0576600:CDS
CACTGGTATTCTCTTCAATA+TGG 0.322369 4_1:+80677998 None:intergenic
CCTTTGAGATGACAGGAGTT+TGG 0.322539 4_1:+80676779 None:intergenic
TGCAAGACTTGAGGCTATTT+GGG 0.323891 4_1:-80677883 Msa0576600:CDS
GCTTTCTTTGTTGGTGGGAT+TGG 0.336342 4_1:-80676640 Msa0576600:CDS
ATTTGGATTTATCCTCCTTA+AGG 0.338464 4_1:+80678123 None:intergenic
ACCGATCATTCTACAGAATC+AGG 0.346191 4_1:-80677966 Msa0576600:CDS
GGAACTGATGCATTATTTAG+AGG 0.356287 4_1:-80676538 Msa0576600:CDS
ACCGGGTTCGCTTTCTTTGT+TGG 0.369998 4_1:-80676649 Msa0576600:CDS
AAATACTTTATCTTCCCTTA+AGG 0.370949 4_1:-80678138 Msa0576600:CDS
TATGGTGGTACCTCTTCTTC+TGG 0.372818 4_1:+80676958 None:intergenic
ACCTCTTCTTCTGGCAATGA+TGG 0.373177 4_1:+80676967 None:intergenic
TTCAGAATTTATGACTGTTA+AGG 0.381614 4_1:+80676996 None:intergenic
TTTGGATTTATCCTCCTTAA+GGG 0.390006 4_1:+80678124 None:intergenic
ATTTGAGCCATATAAGTTGC+TGG 0.397282 4_1:+80678076 None:intergenic
TTGGTTACCAGCAACTTATA+TGG 0.399396 4_1:-80678083 Msa0576600:CDS
CTTTCTTCCTTTGAGATGAC+AGG 0.409228 4_1:+80676772 None:intergenic
CCAATACGACTTTCGAATTG+AGG 0.415792 4_1:-80676926 Msa0576600:CDS
TTCTTTGTTGGTGGGATTGG+AGG 0.421123 4_1:-80676637 Msa0576600:CDS
AGGTATGTGGACGGATTGCC+AGG 0.423984 4_1:-80676589 Msa0576600:CDS
CTATGCTTGATAGACGTAGA+TGG 0.426250 4_1:-80678026 Msa0576600:CDS
TGCATTATTTAGAGGATTGA+AGG 0.430785 4_1:-80676530 Msa0576600:CDS
CCTCAATTCGAAAGTCGTAT+TGG 0.435999 4_1:+80676926 None:intergenic
CTCTCAGCTGGTGAAAATAC+CGG 0.436324 4_1:-80676667 Msa0576600:CDS
TCAAGCTGAGTCACAAGGTT+AGG 0.450248 4_1:+80676856 None:intergenic
TTCCTCTAAGGTCAGGTCAA+TGG 0.462389 4_1:-80677035 Msa0576600:intron
CTCTAGTGATACACTATGTT+AGG 0.465225 4_1:-80676273 Msa0576600:three_prime_UTR
ACACCAAAAGATATCATAGT+TGG 0.465828 4_1:-80676421 Msa0576600:CDS
AATATAAGTGACTTCAATGC+TGG 0.469726 4_1:-80678056 Msa0576600:CDS
TGGCAAAACAACTGATGGTC+TGG 0.469882 4_1:+80678199 None:intergenic
AACCTTGTGACTCAGCTTGA+AGG 0.472386 4_1:-80676853 Msa0576600:CDS
GGTTCGCTTTCTTTGTTGGT+GGG 0.473259 4_1:-80676645 Msa0576600:CDS
GATATCATAGTTGGAATGAT+GGG 0.476033 4_1:-80676412 Msa0576600:CDS
TCGTATTGGAAGCCGGTGTA+TGG 0.480131 4_1:+80676940 None:intergenic
AGATATCATAGTTGGAATGA+TGG 0.485907 4_1:-80676413 Msa0576600:CDS
CGAATTGAGGATGCATTGCT+TGG 0.486399 4_1:-80676913 Msa0576600:CDS
ATCTTTATTCAGGGTCAAGT+TGG 0.488774 4_1:-80678102 Msa0576600:CDS
GCATTTAAGCCTATAACACT+TGG 0.489741 4_1:-80676355 Msa0576600:CDS
TAAATCCAAATCTTTATTCA+GGG 0.498208 4_1:-80678111 Msa0576600:CDS
TGTATCTGCTATTGTTGCAG+AGG 0.499344 4_1:-80676609 Msa0576600:CDS
GGGTTCGCTTTCTTTGTTGG+TGG 0.499672 4_1:-80676646 Msa0576600:CDS
GTCAATGCCACACTTACTAT+AGG 0.502910 4_1:+80676505 None:intergenic
TCAATTGCTTCCCTCTCAGC+TGG 0.512231 4_1:-80676679 Msa0576600:CDS
ATGTAAAGTTTCTGTGGTGT+TGG 0.512933 4_1:-80676380 Msa0576600:CDS
TAGGCATAACTCAATACAAA+TGG 0.519513 4_1:-80676254 Msa0576600:three_prime_UTR
CATACTTTCACGTCAGAGGC+TGG 0.524216 4_1:+80678179 None:intergenic
CCCTGATTCTGTAGAATGAT+CGG 0.525561 4_1:+80677965 None:intergenic
ACCAACAAAGAAAGCGAACC+CGG 0.525652 4_1:+80676648 None:intergenic
ACTTGAAATTCTTCTAGAAG+AGG 0.530331 4_1:+80679241 None:intergenic
GATATACTTCATTTCCAAAG+AGG 0.531996 4_1:-80677942 Msa0576600:CDS
AAGGTTCAGAGCTATAGCTA+TGG 0.534181 4_1:-80679348 Msa0576600:exon
TAACAGTCATAAATTCTGAA+TGG 0.537218 4_1:-80676993 Msa0576600:CDS
ACACTTGGGCAGAAGTTACC+TGG 0.542605 4_1:-80676340 Msa0576600:CDS
ACCTTGTGACTCAGCTTGAA+GGG 0.543737 4_1:-80676852 Msa0576600:CDS
TACTTTATCTTCCCTTAAGG+AGG 0.546271 4_1:-80678135 Msa0576600:CDS
GCATTATTTAGAGGATTGAA+GGG 0.551480 4_1:-80676529 Msa0576600:CDS
TTTGTAGTGAAGTATAGCTC+AGG 0.553123 4_1:-80676466 Msa0576600:CDS
AGACTTGAGGCTATTTGGGT+CGG 0.558381 4_1:-80677879 Msa0576600:CDS
TCTTGCATGTAAAGTTTCTG+TGG 0.561151 4_1:-80676386 Msa0576600:CDS
ACCATCATTGCCAGAAGAAG+AGG 0.565997 4_1:-80676968 Msa0576600:CDS
GAGGCTGGCAAAACAACTGA+TGG 0.567913 4_1:+80678194 None:intergenic
TTGTGAATGAGTGAAGTTGA+AGG 0.568987 4_1:+80679299 None:intergenic
TGATCGGTCATCAAACTCAC+TGG 0.570085 4_1:+80677981 None:intergenic
GCTATTGTTGCAGAGGTATG+TGG 0.570298 4_1:-80676602 Msa0576600:CDS
AGGTCAGGTCAATGGAGACT+AGG 0.573348 4_1:-80677027 Msa0576600:intron
TCGAAAGTCGTATTGGAAGC+CGG 0.576014 4_1:+80676933 None:intergenic
CATCTCAAAGGAAGAAAGCA+TGG 0.576259 4_1:-80676767 Msa0576600:CDS
CCGATCATTCTACAGAATCA+GGG 0.579731 4_1:-80677965 Msa0576600:CDS
CCAAACTCCTGTCATCTCAA+AGG 0.580577 4_1:-80676779 Msa0576600:CDS
TGTGACTCAGCTTGAAGGGA+CGG 0.586916 4_1:-80676848 Msa0576600:CDS
AGGAACTGATCTATCCATGT+TGG 0.588578 4_1:-80676887 Msa0576600:CDS
CATCTACGTCTATCAAGCAT+AGG 0.594306 4_1:+80678027 None:intergenic
TGTGCATACTTTCACGTCAG+AGG 0.601261 4_1:+80678175 None:intergenic
TCTCAGCTGGTGAAAATACC+GGG 0.602142 4_1:-80676666 Msa0576600:CDS
TATTGGAAGCCGGTGTATGG+TGG 0.603889 4_1:+80676943 None:intergenic
AAATTAATCACAAGCAACAA+AGG 0.606917 4_1:-80676562 Msa0576600:CDS
GAGGATGCATTGCTTGGTGA+AGG 0.609971 4_1:-80676907 Msa0576600:CDS
CATTTAAGCCTATAACACTT+GGG 0.611508 4_1:-80676354 Msa0576600:CDS
GAAGGGTCCTATAGTAAGTG+TGG 0.617641 4_1:-80676512 Msa0576600:CDS
TCCCTTCAAGCTGAGTCACA+AGG 0.621122 4_1:+80676851 None:intergenic
CGATCATTCTACAGAATCAG+GGG 0.632486 4_1:-80677964 Msa0576600:CDS
GTGTATAATTACATGTCACC+AGG 0.632874 4_1:+80676322 None:intergenic
CTAGAATTTATATATATCGA+CGG 0.646845 4_1:-80676214 Msa0576600:three_prime_UTR
GTTAGGTCTTAATTCCAACA+TGG 0.676496 4_1:+80676873 None:intergenic
TTAATCACAAGCAACAAAGG+AGG 0.678453 4_1:-80676559 Msa0576600:CDS
TTGTTGCAGAGGTATGTGGA+CGG 0.680400 4_1:-80676598 Msa0576600:CDS
GAAGAGGTACCACCATACAC+CGG 0.692574 4_1:-80676952 Msa0576600:CDS
CTCAAAGGAAGAAAGCATGG+AGG 0.740445 4_1:-80676764 Msa0576600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATGATTCAAAATTT+TGG - chr4_1:80676568-80676587 Msa0576600:CDS 10.0%
!!! AAAAATAAAAGTACTTTATT+TGG + chr4_1:80677230-80677249 None:intergenic 10.0%
!!! ATTCTAGTATATATTTTTTT+TGG - chr4_1:80677722-80677741 Msa0576600:intron 10.0%
!!! AATATAGAAATTTAAAGTTT+TGG + chr4_1:80678412-80678431 None:intergenic 10.0%
!! ATTAAAAATCTTAACTGTTA+AGG - chr4_1:80676429-80676448 Msa0576600:CDS 15.0%
!!! ATTTGTTTTTGTTAAAGTAT+TGG - chr4_1:80676762-80676781 Msa0576600:CDS 15.0%
!! TTTCAAAAATAAAATATGTG+AGG + chr4_1:80676792-80676811 None:intergenic 15.0%
!! AAAATTAGTATCAGAGAATT+TGG + chr4_1:80676373-80676392 None:intergenic 20.0%
!!! TTTAACTGTTCTCTTTATTT+TGG - chr4_1:80676473-80676492 Msa0576600:CDS 20.0%
!!! TTAACTGTTCTCTTTATTTT+GGG - chr4_1:80676474-80676493 Msa0576600:CDS 20.0%
!!! TATATGATTCAAAATTTTGG+AGG - chr4_1:80676571-80676590 Msa0576600:CDS 20.0%
!!! AATTTTGGAGGTATTTTTAT+TGG - chr4_1:80676583-80676602 Msa0576600:CDS 20.0%
!! GTATATTAAATATTTCAGTG+TGG - chr4_1:80676867-80676886 Msa0576600:CDS 20.0%
!!! AAATTGTAACTTTTGTAACA+CGG + chr4_1:80677042-80677061 None:intergenic 20.0%
!!! TTTAGAGTTTGAAAAGATAA+CGG - chr4_1:80677059-80677078 Msa0576600:intron 20.0%
!!! TACATATAACAAATGACTTT+TGG + chr4_1:80677261-80677280 None:intergenic 20.0%
!! ATAAATCCAAATCTTTATTC+AGG - chr4_1:80677448-80677467 Msa0576600:intron 20.0%
!! TAAATCCAAATCTTTATTCA+GGG - chr4_1:80677449-80677468 Msa0576600:intron 20.0%
!! TAACATTTCTGTTTAAAAAC+TGG + chr4_1:80677874-80677893 None:intergenic 20.0%
!! AACTTTCTAAATTGTTAACA+GGG - chr4_1:80677927-80677946 Msa0576600:CDS 20.0%
!! ATTTGGTTAATAGATATATC+AGG - chr4_1:80677978-80677997 Msa0576600:CDS 20.0%
!! ATATTATTAACCATGATTTC+AGG + chr4_1:80678104-80678123 None:intergenic 20.0%
!! GTTAATAATATTCGAATTCA+TGG - chr4_1:80678113-80678132 Msa0576600:CDS 20.0%
!! TATTGTTTGAACATCAATTT+GGG + chr4_1:80678266-80678285 None:intergenic 20.0%
!! ATATTGTTTGAACATCAATT+TGG + chr4_1:80678267-80678286 None:intergenic 20.0%
!!! TGATGTTCAAACAATATTTT+TGG - chr4_1:80678270-80678289 Msa0576600:intron 20.0%
!!! ATAGAAATTTAAAGTTTTGG+AGG + chr4_1:80678409-80678428 None:intergenic 20.0%
!!! TCTTTTTTGAACAAACTTAT+AGG + chr4_1:80678740-80678759 None:intergenic 20.0%
!! CTAGAATTTATATATATCGA+CGG - chr4_1:80679346-80679365 Msa0576600:exon 20.0%
!! TTCTCTGATACTAATTTTCA+AGG - chr4_1:80676375-80676394 Msa0576600:CDS 25.0%
! TAACGAAGAAATTAAGAAGT+GGG + chr4_1:80676405-80676424 None:intergenic 25.0%
! TTAACGAAGAAATTAAGAAG+TGG + chr4_1:80676406-80676425 None:intergenic 25.0%
!! AAGGTTTAGTTTCACTTAAA+TGG - chr4_1:80676448-80676467 Msa0576600:CDS 25.0%
! ATTTGATGTTTGCCTATATA+TGG - chr4_1:80676688-80676707 Msa0576600:CDS 25.0%
! TCATCATATATGCCATATAT+AGG + chr4_1:80676703-80676722 None:intergenic 25.0%
! TGTTTGTAGTTATTATTGTC+AGG - chr4_1:80676833-80676852 Msa0576600:CDS 25.0%
! TATTTAATATACCACTTGCT+AGG + chr4_1:80676859-80676878 None:intergenic 25.0%
!!! TGATTATAGTTGGTTAGTTT+TGG - chr4_1:80676901-80676920 Msa0576600:CDS 25.0%
! AAATACTTTATCTTCCCTTA+AGG - chr4_1:80677422-80677441 Msa0576600:intron 25.0%
!!! TGTTGATGAATTCATTTTTG+AGG - chr4_1:80677644-80677663 Msa0576600:intron 25.0%
!!! GTTGATGAATTCATTTTTGA+GGG - chr4_1:80677645-80677664 Msa0576600:intron 25.0%
! AAATTGTATTTCCTGACATT+TGG - chr4_1:80677840-80677859 Msa0576600:intron 25.0%
! CAACTTTCTAAATTGTTAAC+AGG - chr4_1:80677926-80677945 Msa0576600:CDS 25.0%
! GTTAATCACGTTTAAATTTG+TGG + chr4_1:80678041-80678060 None:intergenic 25.0%
! ATTTGAACACTTGAAAATCA+AGG + chr4_1:80678063-80678082 None:intergenic 25.0%
! TGTTCAAATCTACATATAGT+TGG - chr4_1:80678074-80678093 Msa0576600:CDS 25.0%
! ATAATATTCGAATTCATGGT+TGG - chr4_1:80678117-80678136 Msa0576600:CDS 25.0%
! GAAGCTTGAAAAATTAATGT+TGG - chr4_1:80678461-80678480 Msa0576600:intron 25.0%
! TTCAGAATTTATGACTGTTA+AGG + chr4_1:80678567-80678586 None:intergenic 25.0%
! TAACAGTCATAAATTCTGAA+TGG - chr4_1:80678567-80678586 Msa0576600:intron 25.0%
! AAATTAATCACAAGCAACAA+AGG - chr4_1:80678998-80679017 Msa0576600:intron 25.0%
!! ATTCCAACTATGATATCTTT+TGG + chr4_1:80679145-80679164 None:intergenic 25.0%
! ACTTGAAATTCTTCTAGAAG+AGG + chr4_1:80676322-80676341 None:intergenic 30.0%
AACGAAGAAATTAAGAAGTG+GGG + chr4_1:80676404-80676423 None:intergenic 30.0%
!!! TTGGAGGTATTTTTATTGGA+AGG - chr4_1:80676587-80676606 Msa0576600:CDS 30.0%
!! AGGAAGCTTTTTAAGCAATT+TGG - chr4_1:80676607-80676626 Msa0576600:CDS 30.0%
!! GGAAGCTTTTTAAGCAATTT+GGG - chr4_1:80676608-80676627 Msa0576600:CDS 30.0%
ATATAGGCAAACATCAAATC+AGG + chr4_1:80676687-80676706 None:intergenic 30.0%
! CAAACAACTTTGAAAAGAGT+AGG + chr4_1:80676819-80676838 None:intergenic 30.0%
GAGTACGTAATGATTATAGT+TGG - chr4_1:80676891-80676910 Msa0576600:CDS 30.0%
AAGACCATGCTAATATAAAC+CGG + chr4_1:80677155-80677174 None:intergenic 30.0%
AATATATACTCCAAGAAGCA+TGG + chr4_1:80677202-80677221 None:intergenic 30.0%
! GCTTCTTGGAGTATATATTT+TGG - chr4_1:80677203-80677222 Msa0576600:intron 30.0%
TTTGGATTTATCCTCCTTAA+GGG + chr4_1:80677439-80677458 None:intergenic 30.0%
ATTTGGATTTATCCTCCTTA+AGG + chr4_1:80677440-80677459 None:intergenic 30.0%
AATATAAGTGACTTCAATGC+TGG - chr4_1:80677504-80677523 Msa0576600:intron 30.0%
GATATACTTCATTTCCAAAG+AGG - chr4_1:80677618-80677637 Msa0576600:intron 30.0%
GACTTCAAAATTGAAGGTTA+AGG + chr4_1:80677774-80677793 None:intergenic 30.0%
TAAAGGGACTTCAAAATTGA+AGG + chr4_1:80677780-80677799 None:intergenic 30.0%
! GAAGACAGATGTTGATTAAA+GGG + chr4_1:80677796-80677815 None:intergenic 30.0%
CAGCACTTCAAAAAATTTGA+GGG + chr4_1:80677818-80677837 None:intergenic 30.0%
ACAGCACTTCAAAAAATTTG+AGG + chr4_1:80677819-80677838 None:intergenic 30.0%
!! GTTAAAAGAAGCGTTACATT+TGG - chr4_1:80677961-80677980 Msa0576600:CDS 30.0%
GTAGTTCAATAAGTAGTTAG+TGG + chr4_1:80678187-80678206 None:intergenic 30.0%
! ATATATGATGGAATCCTAGT+GGG + chr4_1:80678345-80678364 None:intergenic 30.0%
! AATATATGATGGAATCCTAG+TGG + chr4_1:80678346-80678365 None:intergenic 30.0%
! CTTGTGATTAATTTTGAACC+TGG + chr4_1:80678992-80679011 None:intergenic 30.0%
TGCATTATTTAGAGGATTGA+AGG - chr4_1:80679030-80679049 Msa0576600:intron 30.0%
GCATTATTTAGAGGATTGAA+GGG - chr4_1:80679031-80679050 Msa0576600:intron 30.0%
ACACCAAAAGATATCATAGT+TGG - chr4_1:80679139-80679158 Msa0576600:intron 30.0%
AGATATCATAGTTGGAATGA+TGG - chr4_1:80679147-80679166 Msa0576600:intron 30.0%
GATATCATAGTTGGAATGAT+GGG - chr4_1:80679148-80679167 Msa0576600:intron 30.0%
CATTTAAGCCTATAACACTT+GGG - chr4_1:80679206-80679225 Msa0576600:CDS 30.0%
TAGGCATAACTCAATACAAA+TGG - chr4_1:80679306-80679325 Msa0576600:CDS 30.0%
! GAAGGAATCATAGTTTTCAC+AGG + chr4_1:80676246-80676265 None:intergenic 35.0%
TTGTGAATGAGTGAAGTTGA+AGG + chr4_1:80676264-80676283 None:intergenic 35.0%
TTTGGGAGTAATTTACAAGC+TGG - chr4_1:80676625-80676644 Msa0576600:CDS 35.0%
TTGTCAAATCATGGCTGATT+TGG - chr4_1:80676648-80676667 Msa0576600:CDS 35.0%
TACTGAGTACATGTTTGGAT+TGG + chr4_1:80677113-80677132 None:intergenic 35.0%
!! TTGAGTACTGAGTACATGTT+TGG + chr4_1:80677118-80677137 None:intergenic 35.0%
GGTTTATATTAGCATGGTCT+TGG - chr4_1:80677154-80677173 Msa0576600:intron 35.0%
TTAATCAGTTCCATGCTTCT+TGG - chr4_1:80677189-80677208 Msa0576600:intron 35.0%
TATGTAATCAGTCTCATGTC+TGG - chr4_1:80677275-80677294 Msa0576600:intron 35.0%
ATGAATTATCGACACAAGCA+CGG + chr4_1:80677304-80677323 None:intergenic 35.0%
GTCGATAATTCATAGCTAAC+TGG - chr4_1:80677311-80677330 Msa0576600:intron 35.0%
! GGTATAACTCTGAAAATCTG+TGG + chr4_1:80677343-80677362 None:intergenic 35.0%
TACTTTATCTTCCCTTAAGG+AGG - chr4_1:80677425-80677444 Msa0576600:intron 35.0%
CTTGACCCTGAATAAAGATT+TGG + chr4_1:80677457-80677476 None:intergenic 35.0%
ATCTTTATTCAGGGTCAAGT+TGG - chr4_1:80677458-80677477 Msa0576600:intron 35.0%
TTGGTTACCAGCAACTTATA+TGG - chr4_1:80677477-80677496 Msa0576600:intron 35.0%
ATTTGAGCCATATAAGTTGC+TGG + chr4_1:80677487-80677506 None:intergenic 35.0%
CACTGGTATTCTCTTCAATA+TGG + chr4_1:80677565-80677584 None:intergenic 35.0%
ATTCATCAACAGAACCTCTT+TGG + chr4_1:80677635-80677654 None:intergenic 35.0%
TCCAAAAATTGCAAGACTTG+AGG - chr4_1:80677668-80677687 Msa0576600:intron 35.0%
! GGAAGACAGATGTTGATTAA+AGG + chr4_1:80677797-80677816 None:intergenic 35.0%
AAATGACATTGATATGCCTC+TGG + chr4_1:80678320-80678339 None:intergenic 35.0%
! TATATGATGGAATCCTAGTG+GGG + chr4_1:80678344-80678363 None:intergenic 35.0%
TTGGGACAGCTAATATATGA+TGG + chr4_1:80678357-80678376 None:intergenic 35.0%
TTGTCACTGCATCAAACATA+AGG - chr4_1:80678431-80678450 Msa0576600:intron 35.0%
ATACTCTTCTTCTTCCTCTA+AGG - chr4_1:80678513-80678532 Msa0576600:intron 35.0%
GTTAGGTCTTAATTCCAACA+TGG + chr4_1:80678690-80678709 None:intergenic 35.0%
!! GATGCTGTGCTGATATTTTT+CGG - chr4_1:80678854-80678873 Msa0576600:intron 35.0%
TTAATCACAAGCAACAAAGG+AGG - chr4_1:80679001-80679020 Msa0576600:intron 35.0%
GGAACTGATGCATTATTTAG+AGG - chr4_1:80679022-80679041 Msa0576600:intron 35.0%
!! TAAGTGTGGCATTGACTTTA+GGG - chr4_1:80679062-80679081 Msa0576600:intron 35.0%
TTTGTAGTGAAGTATAGCTC+AGG - chr4_1:80679094-80679113 Msa0576600:intron 35.0%
TCTTGCATGTAAAGTTTCTG+TGG - chr4_1:80679174-80679193 Msa0576600:intron 35.0%
ATGTAAAGTTTCTGTGGTGT+TGG - chr4_1:80679180-80679199 Msa0576600:intron 35.0%
GCATTTAAGCCTATAACACT+TGG - chr4_1:80679205-80679224 Msa0576600:CDS 35.0%
GTGTATAATTACATGTCACC+AGG + chr4_1:80679241-80679260 None:intergenic 35.0%
CTCTAGTGATACACTATGTT+AGG - chr4_1:80679287-80679306 Msa0576600:CDS 35.0%
AAGGTTCAGAGCTATAGCTA+TGG - chr4_1:80676212-80676231 Msa0576600:three_prime_UTR 40.0%
ACAAGCTGGTTGTCAAATCA+TGG - chr4_1:80676639-80676658 Msa0576600:CDS 40.0%
! TTGAAAAGATAACGGTGCCA+CGG - chr4_1:80677067-80677086 Msa0576600:intron 40.0%
!! GTTTGGATTGGCAATGTGTT+TGG + chr4_1:80677101-80677120 None:intergenic 40.0%
CATGCTAATATAAACCGGCT+AGG + chr4_1:80677150-80677169 None:intergenic 40.0%
! CTAGCCGGTTTATATTAGCA+TGG - chr4_1:80677148-80677167 Msa0576600:intron 40.0%
! ATTAGCATGGTCTTGGTAGA+TGG - chr4_1:80677161-80677180 Msa0576600:intron 40.0%
CATCTACGTCTATCAAGCAT+AGG + chr4_1:80677536-80677555 None:intergenic 40.0%
CTATGCTTGATAGACGTAGA+TGG - chr4_1:80677534-80677553 Msa0576600:intron 40.0%
ACCGATCATTCTACAGAATC+AGG - chr4_1:80677594-80677613 Msa0576600:intron 40.0%
CCCTGATTCTGTAGAATGAT+CGG + chr4_1:80677598-80677617 None:intergenic 40.0%
CCGATCATTCTACAGAATCA+GGG - chr4_1:80677595-80677614 Msa0576600:intron 40.0%
CGATCATTCTACAGAATCAG+GGG - chr4_1:80677596-80677615 Msa0576600:intron 40.0%
! GCCTCAAGTCTTGCAATTTT+TGG + chr4_1:80677672-80677691 None:intergenic 40.0%
TTGCAAGACTTGAGGCTATT+TGG - chr4_1:80677676-80677695 Msa0576600:intron 40.0%
TGCAAGACTTGAGGCTATTT+GGG - chr4_1:80677677-80677696 Msa0576600:intron 40.0%
TGGAATGTGATCCAAATGTC+AGG + chr4_1:80677854-80677873 None:intergenic 40.0%
AGTTGGAACACCTGAAATCA+TGG - chr4_1:80678091-80678110 Msa0576600:CDS 40.0%
! GGTTGGTTAAGCTCATTTGA+TGG - chr4_1:80678134-80678153 Msa0576600:CDS 40.0%
GTTAGTGGTGAAGACAAGAA+CGG + chr4_1:80678172-80678191 None:intergenic 40.0%
! ATATGATGGAATCCTAGTGG+GGG + chr4_1:80678343-80678362 None:intergenic 40.0%
CCTCAATTCGAAAGTCGTAT+TGG + chr4_1:80678637-80678656 None:intergenic 40.0%
CCAATACGACTTTCGAATTG+AGG - chr4_1:80678634-80678653 Msa0576600:intron 40.0%
AGGAACTGATCTATCCATGT+TGG - chr4_1:80678673-80678692 Msa0576600:intron 40.0%
!! CTTTCTTCCTTTGAGATGAC+AGG + chr4_1:80678791-80678810 None:intergenic 40.0%
CATCTCAAAGGAAGAAAGCA+TGG - chr4_1:80678793-80678812 Msa0576600:intron 40.0%
TGTATCTGCTATTGTTGCAG+AGG - chr4_1:80678951-80678970 Msa0576600:intron 40.0%
GTCAATGCCACACTTACTAT+AGG + chr4_1:80679058-80679077 None:intergenic 40.0%
!! GTAAGTGTGGCATTGACTTT+AGG - chr4_1:80679061-80679080 Msa0576600:intron 40.0%
AACTTCTGCCCAAGTGTTAT+AGG + chr4_1:80679217-80679236 None:intergenic 40.0%
!! ATTCGTGCTTTTGGGGAAGA+AGG - chr4_1:80676193-80676212 Msa0576600:three_prime_UTR 45.0%
TTATTGTCAGGCCTAGCAAG+TGG - chr4_1:80676845-80676864 Msa0576600:CDS 45.0%
!! TGAAAAGATAACGGTGCCAC+GGG - chr4_1:80677068-80677087 Msa0576600:intron 45.0%
CTCAAAAGCTTGAACCTAGC+CGG - chr4_1:80677133-80677152 Msa0576600:intron 45.0%
TGGCAAAACAACTGATGGTC+TGG + chr4_1:80677364-80677383 None:intergenic 45.0%
TGTGCATACTTTCACGTCAG+AGG + chr4_1:80677388-80677407 None:intergenic 45.0%
TGATCGGTCATCAAACTCAC+TGG + chr4_1:80677582-80677601 None:intergenic 45.0%
AGACTTGAGGCTATTTGGGT+CGG - chr4_1:80677681-80677700 Msa0576600:intron 45.0%
!! ATTTGGGTCGGTGTTGATTC+AGG - chr4_1:80677693-80677712 Msa0576600:intron 45.0%
TGACATTGATATGCCTCTGG+TGG + chr4_1:80678317-80678336 None:intergenic 45.0%
! TCAATGTCATTTCCCCCACT+AGG - chr4_1:80678328-80678347 Msa0576600:intron 45.0%
!! CTTCTTCTTCCTCTAAGGTC+AGG - chr4_1:80678518-80678537 Msa0576600:intron 45.0%
!! TTCCTCTAAGGTCAGGTCAA+TGG - chr4_1:80678525-80678544 Msa0576600:intron 45.0%
ACCATCATTGCCAGAAGAAG+AGG - chr4_1:80678592-80678611 Msa0576600:intron 45.0%
ACCTCTTCTTCTGGCAATGA+TGG + chr4_1:80678596-80678615 None:intergenic 45.0%
TATGGTGGTACCTCTTCTTC+TGG + chr4_1:80678605-80678624 None:intergenic 45.0%
TCGAAAGTCGTATTGGAAGC+CGG + chr4_1:80678630-80678649 None:intergenic 45.0%
CGAATTGAGGATGCATTGCT+TGG - chr4_1:80678647-80678666 Msa0576600:intron 45.0%
TCAAGCTGAGTCACAAGGTT+AGG + chr4_1:80678707-80678726 None:intergenic 45.0%
AACCTTGTGACTCAGCTTGA+AGG - chr4_1:80678707-80678726 Msa0576600:intron 45.0%
ACCTTGTGACTCAGCTTGAA+GGG - chr4_1:80678708-80678727 Msa0576600:intron 45.0%
!! CCTTTGAGATGACAGGAGTT+TGG + chr4_1:80678784-80678803 None:intergenic 45.0%
CCAAACTCCTGTCATCTCAA+AGG - chr4_1:80678781-80678800 Msa0576600:intron 45.0%
! CTCAAAGGAAGAAAGCATGG+AGG - chr4_1:80678796-80678815 Msa0576600:intron 45.0%
! GGTATTTTCACCAGCTGAGA+GGG + chr4_1:80678894-80678913 None:intergenic 45.0%
CTCTCAGCTGGTGAAAATAC+CGG - chr4_1:80678893-80678912 Msa0576600:intron 45.0%
TCTCAGCTGGTGAAAATACC+GGG - chr4_1:80678894-80678913 Msa0576600:intron 45.0%
ACCAACAAAGAAAGCGAACC+CGG + chr4_1:80678915-80678934 None:intergenic 45.0%
GGTTCGCTTTCTTTGTTGGT+GGG - chr4_1:80678915-80678934 Msa0576600:intron 45.0%
! GCTTTCTTTGTTGGTGGGAT+TGG - chr4_1:80678920-80678939 Msa0576600:intron 45.0%
! TTCTTTGTTGGTGGGATTGG+AGG - chr4_1:80678923-80678942 Msa0576600:intron 45.0%
! GCTATTGTTGCAGAGGTATG+TGG - chr4_1:80678958-80678977 Msa0576600:intron 45.0%
! TTGTTGCAGAGGTATGTGGA+CGG - chr4_1:80678962-80678981 Msa0576600:intron 45.0%
GAAGGGTCCTATAGTAAGTG+TGG - chr4_1:80679048-80679067 Msa0576600:intron 45.0%
!! AAATATAAATAATATATGTT+GGG + chr4_1:80678375-80678394 None:intergenic 5.0%
!! AAAATATAAATAATATATGT+TGG + chr4_1:80678376-80678395 None:intergenic 5.0%
!! GAAAAGATAACGGTGCCACG+GGG - chr4_1:80677069-80677088 Msa0576600:intron 50.0%
GAGGCTGGCAAAACAACTGA+TGG + chr4_1:80677369-80677388 None:intergenic 50.0%
CATACTTTCACGTCAGAGGC+TGG + chr4_1:80677384-80677403 None:intergenic 50.0%
GCATTGTGCAATTCCACCAG+AGG - chr4_1:80678301-80678320 Msa0576600:intron 50.0%
CTCCATTGACCTGACCTTAG+AGG + chr4_1:80678530-80678549 None:intergenic 50.0%
AGGTCAGGTCAATGGAGACT+AGG - chr4_1:80678533-80678552 Msa0576600:intron 50.0%
!! GAAGAGGTACCACCATACAC+CGG - chr4_1:80678608-80678627 Msa0576600:intron 50.0%
TATTGGAAGCCGGTGTATGG+TGG + chr4_1:80678620-80678639 None:intergenic 50.0%
TCGTATTGGAAGCCGGTGTA+TGG + chr4_1:80678623-80678642 None:intergenic 50.0%
! GAGGATGCATTGCTTGGTGA+AGG - chr4_1:80678653-80678672 Msa0576600:intron 50.0%
TCCCTTCAAGCTGAGTCACA+AGG + chr4_1:80678712-80678731 None:intergenic 50.0%
TGTGACTCAGCTTGAAGGGA+CGG - chr4_1:80678712-80678731 Msa0576600:intron 50.0%
TCAATTGCTTCCCTCTCAGC+TGG - chr4_1:80678881-80678900 Msa0576600:intron 50.0%
! CGGTATTTTCACCAGCTGAG+AGG + chr4_1:80678895-80678914 None:intergenic 50.0%
ACCGGGTTCGCTTTCTTTGT+TGG - chr4_1:80678911-80678930 Msa0576600:intron 50.0%
GGGTTCGCTTTCTTTGTTGG+TGG - chr4_1:80678914-80678933 Msa0576600:intron 50.0%
ACACTTGGGCAGAAGTTACC+TGG - chr4_1:80679220-80679239 Msa0576600:CDS 50.0%
TGTGTTTGGCGAAATCCCCG+TGG + chr4_1:80677087-80677106 None:intergenic 55.0%
!! AGGTATGTGGACGGATTGCC+AGG - chr4_1:80678971-80678990 Msa0576600:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80676192 80679390 80676192 ID=Msa0576600;Name=Msa0576600
chr4_1 mRNA 80676192 80679390 80676192 ID=Msa0576600-mRNA-1;Parent=Msa0576600;Name=Msa0576600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=39|1|1|1|1|1|3|138|415
chr4_1 exon 80676192 80677042 80676192 ID=Msa0576600-mRNA-1:exon:28897;Parent=Msa0576600-mRNA-1
chr4_1 exon 80677868 80678236 80677868 ID=Msa0576600-mRNA-1:exon:28896;Parent=Msa0576600-mRNA-1
chr4_1 exon 80679186 80679390 80679186 ID=Msa0576600-mRNA-1:exon:28895;Parent=Msa0576600-mRNA-1
chr4_1 five_prime_UTR 80679352 80679390 80679352 ID=Msa0576600-mRNA-1:five_prime_utr;Parent=Msa0576600-mRNA-1
chr4_1 CDS 80679186 80679351 80679186 ID=Msa0576600-mRNA-1:cds;Parent=Msa0576600-mRNA-1
chr4_1 CDS 80677868 80678236 80677868 ID=Msa0576600-mRNA-1:cds;Parent=Msa0576600-mRNA-1
chr4_1 CDS 80676330 80677042 80676330 ID=Msa0576600-mRNA-1:cds;Parent=Msa0576600-mRNA-1
chr4_1 three_prime_UTR 80676192 80676329 80676192 ID=Msa0576600-mRNA-1:three_prime_utr;Parent=Msa0576600-mRNA-1
Gene Sequence

>Msa0576600

ATGGAGACAATTCCTGTGAAAACTATGATTCCTTCAACTTCACTCATTCACAATCATGCTTTCAAAAGAAAATCAACAACACACACAACCTCTTCTAGAAGAATTTCAAGTTCAAGACATGTACGCTTTTCTATTCGTGCCAAATTCTCTGATACTAATTTTCAAGATTTTCAGAGTTATACCAGACCATCAGTTGTTTTGCCAGCCTCTGACGTGAAAGTATGCACAGATACATCATTAGAAAATACTTTATCTTCCCTTAAGGAGGATAAATCCAAATCTTTATTCAGGGTCAAGTTGGTTACCAGCAACTTATATGGCTCAAATATAAGTGACTTCAATGCTGGAATTCTCCTATGCTTGATAGACGTAGATGGAAATTCCATATTGAAGAGAATACCAGTGAGTTTGATGACCGATCATTCTACAGAATCAGGGGATATACTTCATTTCCAAAGAGGTTCTGTTGATGAATTCATTTTTGAGGGTCCAAAAATTGCAAGACTTGAGGCTATTTGGGTCGGTGTTGATTCAGGTCAATGGAGACTAGGAAATATCTCCTTAACAGTCATAAATTCTGAATGGCAACCATCATTGCCAGAAGAAGAGGTACCACCATACACCGGCTTCCAATACGACTTTCGAATTGAGGATGCATTGCTTGGTGAAGGAACTGATCTATCCATGTTGGAATTAAGACCTAACCTTGTGACTCAGCTTGAAGGGACGGATCCTATAAGTTTGTTCAAAAAAGAACTTTATGACAGTACATTGCTCCAAACTCCTGTCATCTCAAAGGAAGAAAGCATGGAGGAATACACAAATTTGAAATTCTCATTGCTATTTTATGATGCTGTGCTGATATTTTTCGGCACATCAATTGCTTCCCTCTCAGCTGGTGAAAATACCGGGTTCGCTTTCTTTGTTGGTGGGATTGGAGGCTTCTTGTATCTGCTATTGTTGCAGAGGTATGTGGACGGATTGCCAGGTTCAAAATTAATCACAAGCAACAAAGGAGGAACTGATGCATTATTTAGAGGATTGAAGGGTCCTATAGTAAGTGTGGCATTGACTTTAGGGTTTGCTGTATTTGTAGTGAAGTATAGCTCAGGAGATGATTTTGAAGTGTTCTTAACACCAAAAGATATCATAGTTGGAATGATGGGATTTCTTGCATGTAAAGTTTCTGTGGTGTTGGCTGCATTTAAGCCTATAACACTTGGGCAGAAGTTACCTGGTGACATGTAA

Protein sequence

>Msa0576600

METIPVKTMIPSTSLIHNHAFKRKSTTHTTSSRRISSSRHVRFSIRAKFSDTNFQDFQSYTRPSVVLPASDVKVCTDTSLENTLSSLKEDKSKSLFRVKLVTSNLYGSNISDFNAGILLCLIDVDGNSILKRIPVSLMTDHSTESGDILHFQRGSVDEFIFEGPKIARLEAIWVGVDSGQWRLGNISLTVINSEWQPSLPEEEVPPYTGFQYDFRIEDALLGEGTDLSMLELRPNLVTQLEGTDPISLFKKELYDSTLLQTPVISKEESMEEYTNLKFSLLFYDAVLIFFGTSIASLSAGENTGFAFFVGGIGGFLYLLLLQRYVDGLPGSKLITSNKGGTDALFRGLKGPIVSVALTLGFAVFVVKYSSGDDFEVFLTPKDIIVGMMGFLACKVSVVLAAFKPITLGQKLPGDM*