AlfalfaGEDB | Msa0164360

M. sativa cultivar zhongmu-4 / Msa0164360

KEGG: -
GO: GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039
PFAM: PF11744.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164360	XP_024627845.1	97.079	582	11	2	1	582	1	576	0.0	1159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164360	sp\|Q9LS46\|ALMT9_ARATH	59.829	585	188	8	6	560	3	570	0.0	680

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164360	G7L918	97.079	582	11	2	1	582	1	576	0.0	1159

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0164360	0.866429	2.869224e-65	-8.615850e-47
Msa0008330	Msa0164360	0.805765	1.139668e-49	-8.615850e-47
Msa0008850	Msa0164360	0.893806	4.461466e-75	-8.615850e-47
Msa0011720	Msa0164360	0.834503	2.887151e-56	-8.615850e-47
Msa0015100	Msa0164360	0.800145	1.653181e-48	-8.615850e-47
Msa0017120	Msa0164360	0.813326	2.709370e-51	-8.615850e-47
Msa0020630	Msa0164360	0.850012	2.234762e-60	-8.615850e-47
Msa0024680	Msa0164360	0.805523	1.281059e-49	-8.615850e-47
Msa0027540	Msa0164360	0.844421	7.642146e-59	-8.615850e-47
Msa0030000	Msa0164360	0.834100	3.643477e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164360	MtrunA17_Chr8g0390921	97.079	582	11	2	1	582	1	576	0.0	1159
Msa0164360	MtrunA17_Chr8g0390931	80.855	585	90	5	1	582	1	566	0.0	912
Msa0164360	MtrunA17_Chr8g0390901	92.457	464	29	3	120	582	10	468	0.0	883
Msa0164360	MtrunA17_Chr6g0484691	68.509	597	164	6	4	582	7	597	0.0	788
Msa0164360	MtrunA17_Chr1g0210101	54.513	565	224	10	6	563	48	586	0.0	602
Msa0164360	MtrunA17_Chr1g0212201	30.097	515	316	9	52	559	27	504	6.99e-75	248
Msa0164360	MtrunA17_Chr1g0212251	30.309	518	321	11	52	565	23	504	7.15e-74	245
Msa0164360	MtrunA17_Chr1g0212291	31.528	517	310	11	52	559	24	505	8.15e-73	242
Msa0164360	MtrunA17_Chr4g0054741	32.485	511	302	10	52	559	35	505	1.66e-72	241
Msa0164360	MtrunA17_Chr1g0188871	36.612	366	210	9	53	413	34	382	3.01e-72	239

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164360	AT3G18440.1	59.829	585	188	8	6	560	3	570	0.0	680
Msa0164360	AT1G18420.1	57.218	568	217	10	9	563	27	581	0.0	630
Msa0164360	AT1G18420.2	61.310	504	182	7	67	563	1	498	0.0	619
Msa0164360	AT1G68600.1	58.235	510	183	10	63	563	45	533	0.0	566
Msa0164360	AT1G25480.1	53.832	561	226	9	17	563	4	545	0.0	560
Msa0164360	AT2G17470.2	53.097	565	218	11	23	576	19	547	0.0	560
Msa0164360	AT2G17470.1	53.214	560	215	11	28	576	2	525	0.0	559
Msa0164360	AT4G17970.1	31.879	527	329	12	57	568	30	541	1.32e-79	261
Msa0164360	AT5G46610.1	30.769	533	328	11	47	565	22	527	2.62e-78	257
Msa0164360	AT5G46600.1	31.041	538	317	12	44	559	20	525	2.45e-74	247

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Find 234 sgRNAs with CRISPR-Local

Find 1220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTCTCTTCTCAGC+TGG	0.479127	1_4:+43647595	None:intergenic
AAAACCTGTCTCTTCTCAGC+TGG	0.512258	1_4:+43642564	None:intergenic
AAATCCTCTCCAGCCCAGAT+AGG	0.512204	1_4:+43648848	None:intergenic
AAATGGGTCGTTCTGATCCA+AGG	0.574359	1_4:-43644933	Msa0164360:three_prime_UTR
AAATGGGTCGTTCTGATCCA+AGG	0.574359	1_4:-43650588	Msa0164360:CDS
AACAGATTTACCAATATTAT+CGG	0.373477	1_4:+43658754	None:intergenic
AACTCAGAGTTCTGGGAGAT+CGG	0.510626	1_4:-43647403	Msa0164360:CDS
AAGAATTATGTCAAAGTAAG+CGG	0.491923	1_4:-43648091	Msa0164360:CDS
AAGAATTATGTGAAAGTAAG+CGG	0.517864	1_4:-43643001	Msa0164360:three_prime_UTR
AAGACGCGGTGGCCTCTGGC+GGG	0.520846	1_4:-43646961	Msa0164360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACCAATATTATCGGAACAT+CGG	+	chr1_4:43641775-43641794	None:intergenic	30.0%
AAGTGATGAACATGTATACA+AGG	+	chr1_4:43641856-43641875	None:intergenic	30.0%
ATAATCATGATCAACCTTGA+CGG	+	chr1_4:43641953-43641972	None:intergenic	30.0%
TTGTTTGAATGAAGAACAAG+TGG	-	chr1_4:43641987-43642006	Msa0164360:three_prime_UTR	30.0%
GAATTCAAAGACTACTACAA+CGG	+	chr1_4:43642211-43642230	None:intergenic	30.0%
GTAGTCTTTGAATTCAGTAT+AGG	-	chr1_4:43642216-43642235	Msa0164360:three_prime_UTR	30.0%
AATTACCCACAAATTTGAAC+GGG	+	chr1_4:43642904-43642923	None:intergenic	30.0%
GGAATAAAGTACATTGGAAT+GGG	+	chr1_4:43643344-43643363	None:intergenic	30.0%
AGGAATAAAGTACATTGGAA+TGG	+	chr1_4:43643345-43643364	None:intergenic	30.0%
ACACTTTCAAACAAAGTCTT+AGG	+	chr1_4:43643437-43643456	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	43641734	43658822	43641734	ID=Msa0164360;Name=Msa0164360
chr1_4	mRNA	43641734	43658822	43641734	ID=Msa0164360-mRNA-1;Parent=Msa0164360;Name=Msa0164360-mRNA-1;_AED=0.24;_eAED=0.24;_QI=164\|1\|1\|1\|0.8\|0.63\|11\|1829\|582
chr1_4	exon	43641734	43642589	43641734	ID=Msa0164360-mRNA-1:exon:12516;Parent=Msa0164360-mRNA-1
chr1_4	exon	43642937	43643083	43642937	ID=Msa0164360-mRNA-1:exon:12515;Parent=Msa0164360-mRNA-1
chr1_4	exon	43643170	43643309	43643170	ID=Msa0164360-mRNA-1:exon:12514;Parent=Msa0164360-mRNA-1
chr1_4	exon	43643884	43644291	43643884	ID=Msa0164360-mRNA-1:exon:12513;Parent=Msa0164360-mRNA-1
chr1_4	exon	43644788	43645039	43644788	ID=Msa0164360-mRNA-1:exon:12512;Parent=Msa0164360-mRNA-1
chr1_4	exon	43646899	43647620	43646899	ID=Msa0164360-mRNA-1:exon:12511;Parent=Msa0164360-mRNA-1
chr1_4	exon	43648027	43648173	43648027	ID=Msa0164360-mRNA-1:exon:12510;Parent=Msa0164360-mRNA-1
chr1_4	exon	43648267	43648406	43648267	ID=Msa0164360-mRNA-1:exon:12509;Parent=Msa0164360-mRNA-1
chr1_4	exon	43648798	43649205	43648798	ID=Msa0164360-mRNA-1:exon:12508;Parent=Msa0164360-mRNA-1
chr1_4	exon	43650449	43650859	43650449	ID=Msa0164360-mRNA-1:exon:12507;Parent=Msa0164360-mRNA-1
chr1_4	exon	43658712	43658822	43658712	ID=Msa0164360-mRNA-1:exon:12506;Parent=Msa0164360-mRNA-1
chr1_4	five_prime_UTR	43658712	43658822	43658712	ID=Msa0164360-mRNA-1:five_prime_utr;Parent=Msa0164360-mRNA-1
chr1_4	five_prime_UTR	43650807	43650859	43650807	ID=Msa0164360-mRNA-1:five_prime_utr;Parent=Msa0164360-mRNA-1
chr1_4	CDS	43650449	43650806	43650449	ID=Msa0164360-mRNA-1:cds;Parent=Msa0164360-mRNA-1
chr1_4	CDS	43648798	43649205	43648798	ID=Msa0164360-mRNA-1:cds;Parent=Msa0164360-mRNA-1
chr1_4	CDS	43648267	43648406	43648267	ID=Msa0164360-mRNA-1:cds;Parent=Msa0164360-mRNA-1
chr1_4	CDS	43648027	43648173	43648027	ID=Msa0164360-mRNA-1:cds;Parent=Msa0164360-mRNA-1
chr1_4	CDS	43646925	43647620	43646925	ID=Msa0164360-mRNA-1:cds;Parent=Msa0164360-mRNA-1
chr1_4	three_prime_UTR	43646899	43646924	43646899	ID=Msa0164360-mRNA-1:three_prime_utr;Parent=Msa0164360-mRNA-1
chr1_4	three_prime_UTR	43644788	43645039	43644788	ID=Msa0164360-mRNA-1:three_prime_utr;Parent=Msa0164360-mRNA-1
chr1_4	three_prime_UTR	43643884	43644291	43643884	ID=Msa0164360-mRNA-1:three_prime_utr;Parent=Msa0164360-mRNA-1
chr1_4	three_prime_UTR	43643170	43643309	43643170	ID=Msa0164360-mRNA-1:three_prime_utr;Parent=Msa0164360-mRNA-1
chr1_4	three_prime_UTR	43642937	43643083	43642937	ID=Msa0164360-mRNA-1:three_prime_utr;Parent=Msa0164360-mRNA-1
chr1_4	three_prime_UTR	43641734	43642589	43641734	ID=Msa0164360-mRNA-1:three_prime_utr;Parent=Msa0164360-mRNA-1

Gene Sequence

>Msa0164360

ATGGCACCAAAGTTAGCGAAATCAGGATCATTTCGTTATACTTTAGCTGAGAAAAAGGAAAGACTTCTATCCATGAAGGGTGGTGATCATCATGGTTATTCTCGTATAGGAAATGGTTTGCTACAAGAACAAGAGGAGGAATCTAAGATGGTCAAGTTCAAAAAGATGATGAAGCTCGTTGCTGAAAAAGCATGGGAAATGGGTCGTTCTGATCCAAGGAAGATCATTTTTGCTGCTAAAATGGGTCTTGCTTTGGCCCTTATCTCCCTTTTGATTTTTCTTAAAGAACCCTTCGATTTTAGCCGTCACTCTGTTTGGGCTATTCTCACCGTCGTCGTCGTCTTTGAATTCAGTATAGGGGCAACTCTGAACAGAGGGTTTAACAGAGGATTAGGGACATTGTCAGCTGGAGGACTTGCTGTCGGAATGGGAGAGTTATCAGCATTGGCAGGAGAATGGGAAGAAGTTATAGTGATTATCAGTACATTCATTGTTGGATTTTGTATTACATATGCAAAATTGTACCCAACTTTGAAGCCTTATGAATATGGGTTCCGTGTGTTCTTGATTACTTATTGCTACATTACGGTATCTGGTTATCATAGTGGCGAATTTCTTGATACATCTATAAGTAGATTTTTGCTCATTGCACTTGGTGCTGCTGTATCTTTGGGAGTTAATATCTGCATATATCCTATCTGGGCTGGAGAGGATTTACATAATCTTTTGATAAAAAATTTCACGGGTGTTGCAACATCTTTGGAAGGGGTCGTAAATCACTACCTTAATTGTGTAGAATACAAGAAGGTGCCATCCAAAATTCTGACTTACCAAGCTGCTGCTGATGACCCAGTTTACAGTGGCTACAGATCAGCTGTTGAATCTACAAGTAAAGAGGACTCATTGTTGGGATTTGCTGTGTGGGAACCACCTCATGGTAAATACAAAATGCTTAACTATCCATGGAAGAATTATGTCAAAGTAAGCGGGGCTCTAAGACATTGTGCATTCATGGTCATGGCTATGCATGGATGCATACTTTCTGAAATTCAGGCTCCAGCTGAGAAGAGACATGTTTTCCTCAATGAGCTTAAGAGGGTAGGTTCCGAAGGAGCAAGAGTGTTGCGCGAACTTGGAAACAAAGTAAAAAAGATGGAGAAACTAGACAGAGGAGATTTGCTGTTTGATGTACACGAGGCAGCAGAAGAATTACAACAAAAGATCGATAAAAAATCTTACCTCCTTGTAAACTCAGAGTTCTGGGAGATCGGAAACCGTCCAAGAGATGAAAGTAATGATGATCATCCTAAAGGCCTATTTCACATGGATGAAGATAGAAAATTCCTAGAGTACAAGTCTCTAAGTGAAGCTGTACTTGATCTAAGATCAATTGAAGTTCAAAACAATTGGGATGAAAAAACTACAGATAATAATAGTAATAACCATGCTGTGCCTCCTATTGCCAATGAAAACATGCTTGTGAAACAAATGTCTTGGCCTGCTCATGTTTACTACAAACCAGAAGTCAAAGCAAAAGAGGAAGAATCAAAAACTTATGAAAGTGCTAGTTCGTTGTCTCTAACGACATTTACATCACTTCTGATAGAATTTGTAGCAAGGCTTCAAAATTTAGTGGACTCATTTGAAGAATTGGGTGAGAAAGCTAACTTTAAGGACCCCCTTGAACAGCAAGACGCGGTGGCCTCTGGCGGGTTTTGGACAAAATTGTTTAACTACTTCAAATCCTAG

Protein sequence

>Msa0164360

MAPKLAKSGSFRYTLAEKKERLLSMKGGDHHGYSRIGNGLLQEQEEESKMVKFKKMMKLVAEKAWEMGRSDPRKIIFAAKMGLALALISLLIFLKEPFDFSRHSVWAILTVVVVFEFSIGATLNRGFNRGLGTLSAGGLAVGMGELSALAGEWEEVIVIISTFIVGFCITYAKLYPTLKPYEYGFRVFLITYCYITVSGYHSGEFLDTSISRFLLIALGAAVSLGVNICIYPIWAGEDLHNLLIKNFTGVATSLEGVVNHYLNCVEYKKVPSKILTYQAAADDPVYSGYRSAVESTSKEDSLLGFAVWEPPHGKYKMLNYPWKNYVKVSGALRHCAFMVMAMHGCILSEIQAPAEKRHVFLNELKRVGSEGARVLRELGNKVKKMEKLDRGDLLFDVHEAAEELQQKIDKKSYLLVNSEFWEIGNRPRDESNDDHPKGLFHMDEDRKFLEYKSLSEAVLDLRSIEVQNNWDEKTTDNNSNNHAVPPIANENMLVKQMSWPAHVYYKPEVKAKEEESKTYESASSLSLTTFTSLLIEFVARLQNLVDSFEELGEKANFKDPLEQQDAVASGGFWTKLFNYFKS*