AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0091410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091410 MtrunA17_Chr1g0191671 94.692 584 11 9 1 571 1 577 0.0 1034
Msa0091410 MtrunA17_Chr2g0287751 68.354 79 25 0 1 79 1 79 1.60e-29 122
Msa0091410 MtrunA17_Chr1g0208301 66.667 78 23 1 1 75 1 78 3.77e-28 116
Msa0091410 MtrunA17_Chr0c22g0493881 64.103 78 28 0 1 78 1 78 7.51e-27 112
Msa0091410 MtrunA17_Chr4g0065651 64.103 78 28 0 1 78 1 78 8.84e-27 114
Msa0091410 MtrunA17_Chr4g0065621 64.103 78 28 0 1 78 1 78 5.29e-26 110
Msa0091410 MtrunA17_Chr2g0287741 54.945 91 39 1 12 102 17 105 6.61e-20 93.6
Msa0091410 MtrunA17_Chr7g0269081 57.143 70 30 0 5 74 17 86 1.34e-19 89.7
Msa0091410 MtrunA17_Chr3g0111541 52.113 71 34 0 3 73 5 75 1.12e-18 85.1
Msa0091410 MtrunA17_Chr4g0067291 55.224 67 30 0 7 73 71 137 4.19e-18 86.3
Msa0091410 MtrunA17_Chr7g0272571 54.545 66 30 0 9 74 32 97 3.08e-17 83.6
Msa0091410 MtrunA17_Chr1g0192131 52.174 69 32 1 7 74 12 80 1.28e-16 82.0
Msa0091410 MtrunA17_Chr8g0382721 60.656 61 24 0 14 74 33 93 4.26e-15 72.8
Msa0091410 MtrunA17_Chr2g0296001 54.412 68 31 0 7 74 70 137 4.38e-14 73.9
Msa0091410 MtrunA17_Chr3g0124411 54.545 66 30 0 9 74 29 94 4.42e-14 70.1
Msa0091410 MtrunA17_Chr2g0285561 39.474 76 45 1 4 78 2 77 9.39e-13 69.3
Msa0091410 MtrunA17_Chr6g0448861 41.791 67 38 1 9 74 29 95 1.18e-12 65.9
Msa0091410 MtrunA17_Chr1g0189221 43.243 74 42 0 1 74 44 117 4.44e-12 65.1
Msa0091410 MtrunA17_Chr5g0407821 40.278 72 43 0 3 74 16 87 6.68e-12 63.5
Msa0091410 MtrunA17_Chr4g0036931 41.096 73 42 1 3 74 21 93 8.62e-12 63.5
Msa0091410 MtrunA17_Chr7g0251491 40.541 74 43 1 2 74 40 113 9.29e-12 63.9
Msa0091410 MtrunA17_Chr5g0405811 42.647 68 38 1 8 74 27 94 1.58e-11 62.8
Msa0091410 MtrunA17_Chr4g0050571 44.286 70 38 1 10 79 101 169 2.99e-11 62.4
Msa0091410 MtrunA17_Chr1g0160201 39.394 66 40 0 9 74 24 89 3.33e-11 61.6
Msa0091410 MtrunA17_Chr3g0115421 37.349 83 49 1 14 93 30 112 3.84e-11 61.6
Msa0091410 MtrunA17_Chr2g0325601 41.026 78 45 1 14 91 6 82 4.43e-11 61.2
Msa0091410 MtrunA17_Chr1g0198341 42.647 68 39 0 7 74 1 68 5.09e-11 58.9
Msa0091410 MtrunA17_Chr3g0094841 47.761 67 34 1 9 74 115 181 6.26e-11 62.8
Msa0091410 MtrunA17_Chr5g0422891 40.323 62 37 0 14 75 29 90 9.08e-11 60.5
Msa0091410 MtrunA17_Chr6g0485081 41.176 68 39 1 7 74 62 128 9.35e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091410 AT5G19090.2 63.366 101 36 1 1 101 1 100 1.59e-32 130
Msa0091410 AT5G19090.3 63.366 101 36 1 1 101 1 100 1.59e-32 130
Msa0091410 AT5G19090.5 63.366 101 36 1 1 101 1 100 5.85e-32 130
Msa0091410 AT5G19090.4 63.366 101 36 1 1 101 1 100 5.85e-32 130
Msa0091410 AT5G19090.1 63.366 101 36 1 1 101 1 100 5.85e-32 130
Msa0091410 AT3G05220.1 57.143 112 43 1 1 112 1 107 1.90e-29 123
Msa0091410 AT1G23000.1 47.656 128 54 4 6 132 9 124 6.41e-24 103
Msa0091410 AT1G23000.2 47.656 128 54 4 6 132 69 184 2.44e-23 103
Msa0091410 AT5G27690.1 47.059 85 45 0 7 91 27 111 2.98e-22 99.0
Msa0091410 AT5G37860.1 58.462 65 27 0 9 73 9 73 5.70e-19 87.4
Msa0091410 AT1G56210.1 58.730 63 26 0 10 72 40 102 2.28e-17 84.3
Msa0091410 AT1G06330.1 50.820 61 30 0 14 74 6 66 1.27e-13 68.9
Msa0091410 AT4G08570.1 47.059 68 35 1 8 74 24 91 5.41e-13 67.4
Msa0091410 AT1G22990.1 41.975 81 44 2 3 82 24 102 6.30e-12 64.3
Msa0091410 AT2G37390.2 47.692 65 33 1 10 74 180 243 7.44e-12 66.2
Msa0091410 AT2G37390.1 47.692 65 33 1 10 74 181 244 7.46e-12 66.2
Msa0091410 AT3G02960.1 41.892 74 42 1 3 75 119 192 1.51e-11 65.1
Msa0091410 AT5G02600.2 49.231 65 32 1 10 74 250 313 2.08e-11 65.9
Msa0091410 AT5G02600.1 49.231 65 32 1 10 74 250 313 2.08e-11 65.9
Msa0091410 AT1G22990.2 42.254 71 40 1 13 82 27 97 2.61e-11 62.4
Msa0091410 AT4G23882.1 46.970 66 34 1 9 73 77 142 3.34e-11 64.7
Msa0091410 AT1G71050.1 40.909 66 39 0 9 74 27 92 3.36e-11 62.0
Msa0091410 AT3G56891.1 45.902 61 33 0 14 74 20 80 4.56e-11 62.0
Msa0091410 AT5G17450.1 42.424 66 38 0 9 74 25 90 6.42e-11 61.2

Find 185 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTGCAACAAAATTTAA+TGG 0.134800 1_2:+73526104 None:intergenic
AGTAGTGGCTAGTTTGTTTC+AGG 0.151067 1_2:-73526157 Msa0091410:three_prime_UTR
AGGAAAATGTGCAAGATTTA+AGG 0.169787 1_2:-73526081 Msa0091410:three_prime_UTR
ATTATTACCATGTCCATTAT+TGG 0.170658 1_2:+73526677 None:intergenic
GAAGAAATCATACAATTTAA+TGG 0.241291 1_2:+73525904 None:intergenic
GGGCCTCCAGGCAATGGATT+TGG 0.269551 1_2:-73527329 Msa0091410:CDS
ACATCCATCAATGAACTATA+TGG 0.284194 1_2:-73526283 Msa0091410:CDS
GCCAAGGGCAATGCCAATAA+TGG 0.314955 1_2:-73526690 Msa0091410:CDS
GATGGAGGTAAGAAGAATAA+AGG 0.317363 1_2:-73527038 Msa0091410:CDS
TGCTGTTGCTGTTGCTGATA+AGG 0.318669 1_2:+73526450 None:intergenic
CTAGTTAAGTTTCTAGGGCT+TGG 0.332945 1_2:-73526921 Msa0091410:CDS
CAGGGAAACATGCTGAACTA+TGG 0.336084 1_2:-73527688 Msa0091410:CDS
AAGAAATCATACAATTTAAT+GGG 0.336801 1_2:+73525905 None:intergenic
CTGCCGGCATGCTCCTCATT+TGG 0.337899 1_2:+73526550 None:intergenic
TGCTGTTGCTGATAAGGATT+TGG 0.339759 1_2:+73526456 None:intergenic
GCCGGCAGTGCAAGGGTTAC+CGG 0.341648 1_2:-73526535 Msa0091410:CDS
AATGGACATGGTAATAATAA+TGG 0.358191 1_2:-73526672 Msa0091410:CDS
AGAAGAGAAGAAATAGTTGT+TGG 0.363777 1_2:+73528422 None:intergenic
ACAAGATATGATGAAAATTC+AGG 0.364742 1_2:-73528354 Msa0091410:intron
GGCCTCCAGGCAATGGATTT+GGG 0.369230 1_2:-73527328 Msa0091410:CDS
GGGGAAAAGCAAAAGGGTGG+TGG 0.371759 1_2:-73527017 Msa0091410:CDS
CAGAATCAAAAGGGTCAAAA+AGG 0.373373 1_2:-73527554 Msa0091410:CDS
GGGGCAGCTGCGGCGATGAA+TGG 0.373441 1_2:-73526510 Msa0091410:CDS
ATGGTAATAATAATGGTAAT+GGG 0.379392 1_2:-73526665 Msa0091410:CDS
ACCATTACCTGGGATGTTCA+TGG 0.380238 1_2:+73527202 None:intergenic
AACATGTTTCTGAGATTTGT+TGG 0.389321 1_2:+73527475 None:intergenic
CCTCCTCCTTTACCATTACC+TGG 0.392465 1_2:+73527191 None:intergenic
ATGGAGGTAAGAAGAATAAA+GGG 0.400340 1_2:-73527037 Msa0091410:CDS
GAGGATGAAGAAGAGGAGTT+TGG 0.403036 1_2:-73527380 Msa0091410:CDS
TCTGATTCATTGCACCCATC+TGG 0.405299 1_2:+73526622 None:intergenic
GAAAAGCAAAAGGGTGGTGG+GGG 0.405813 1_2:-73527014 Msa0091410:CDS
AAAAGTGGTAAGGGTGGAAA+TGG 0.412152 1_2:-73526738 Msa0091410:CDS
CAGTGCAAGGGTTACCGGCC+GGG 0.416864 1_2:-73526530 Msa0091410:CDS
TCCATTATTGGCATTGCCCT+TGG 0.417589 1_2:+73526689 None:intergenic
GGAAAAGCAAAAGGGTGGTG+GGG 0.418059 1_2:-73527015 Msa0091410:CDS
GCCGGTAACCCTTGCACTGC+CGG 0.421629 1_2:+73526534 None:intergenic
CATGGTAATAATAATGGTAA+TGG 0.423098 1_2:-73526666 Msa0091410:CDS
TAGAGGCAAAAGGGTATTGT+TGG 0.425176 1_2:+73528475 None:intergenic
GGTGGAAATGGAAATGGAAA+TGG 0.432449 1_2:-73526726 Msa0091410:CDS
AATGGTCGTGGGCCACAGCT+AGG 0.432834 1_2:-73527260 Msa0091410:CDS
AGTGCAAGGGTTACCGGCCG+GGG 0.435816 1_2:-73526529 Msa0091410:CDS
GGCACCATGTCCTGCTCATA+AGG 0.437152 1_2:+73525996 None:intergenic
GAATAAAGGGGAAAAGCAAA+AGG 0.443691 1_2:-73527024 Msa0091410:CDS
GGTAATGGAGGTGGTAAGAA+AGG 0.449463 1_2:-73527068 Msa0091410:CDS
TATCCACAACATATGATGTA+TGG 0.452805 1_2:-73526318 Msa0091410:CDS
AGAAGTGATAAATTGATTGC+CGG 0.453817 1_2:+73528579 None:intergenic
TGCAAATGGATAATAACAAA+GGG 0.454184 1_2:-73527595 Msa0091410:CDS
TTATTGGCATTGCCCTTGGC+AGG 0.454606 1_2:+73526693 None:intergenic
AAACTGCTTCAGAAAATTGA+AGG 0.457319 1_2:-73528150 Msa0091410:intron
ACCTATGCAAATGCAGATGA+AGG 0.459346 1_2:-73527123 Msa0091410:CDS
GTAATGGAGGTGGTAAGAAA+GGG 0.460661 1_2:-73527067 Msa0091410:CDS
ACATGTTTCTGAGATTTGTT+GGG 0.462682 1_2:+73527476 None:intergenic
GGGAAAAGCAAAAGGGTGGT+GGG 0.463087 1_2:-73527016 Msa0091410:CDS
TCTGGCCCATTGGACCCATA+TGG 0.464410 1_2:+73526640 None:intergenic
CAACAAGCCTCAGAATCAAA+AGG 0.465567 1_2:-73527564 Msa0091410:CDS
GGTAAGGGTGGAAATGGAAA+TGG 0.465972 1_2:-73526732 Msa0091410:CDS
TCACTGAAAACATGAGTGAT+TGG 0.466485 1_2:+73526225 None:intergenic
TGCTGCCCAAATCCATTGCC+TGG 0.470924 1_2:+73527323 None:intergenic
GTGGAAATGGAAATGGAAAT+GGG 0.471325 1_2:-73526725 Msa0091410:CDS
CAAGGGAAGGTGTTGGTGAC+AGG 0.475651 1_2:-73527752 Msa0091410:CDS
AGGGTATTGTTGGAATGCAT+TGG 0.476901 1_2:+73528485 None:intergenic
TCCTCATGGTAAAAGTGGTA+AGG 0.478115 1_2:-73526748 Msa0091410:CDS
TCAGTTTAAGAACATGCAAA+TGG 0.478310 1_2:-73527609 Msa0091410:CDS
AATGGTAAAGGAGGAGGTGG+TGG 0.479249 1_2:-73527185 Msa0091410:CDS
CCACAGCTAGGGCCTGGTGA+TGG 0.480756 1_2:-73527248 Msa0091410:CDS
AGGGAAACATGCTGAACTAT+GGG 0.482972 1_2:-73527687 Msa0091410:CDS
AATGGGTCAGATGGGTTCAA+TGG 0.483632 1_2:-73526574 Msa0091410:CDS
ATTGCACCCATCTGGCCCAT+TGG 0.483802 1_2:+73526630 None:intergenic
AAGGGTAAAAGTGGAAATTA+CGG 0.485308 1_2:-73527104 Msa0091410:CDS
ATCACTCCTCATGGTAAAAG+TGG 0.485671 1_2:-73526753 Msa0091410:CDS
ATTCATCGCCGCAGCTGCCC+CGG 0.485684 1_2:+73526512 None:intergenic
ATGAATAAGATGGGTCCAAT+GGG 0.487266 1_2:-73526591 Msa0091410:CDS
GCAGTGCAAGGGTTACCGGC+CGG 0.488422 1_2:-73526531 Msa0091410:CDS
GGCCATGGTCAAGGGCCTCC+AGG 0.488629 1_2:-73527341 Msa0091410:CDS
CATGGTCATGGCCATGGTCA+AGG 0.488816 1_2:-73527350 Msa0091410:CDS
GAGGAGTGATATCAAAGTCT+TGG 0.489452 1_2:+73526766 None:intergenic
CGTGGGCCACAGCTAGGGCC+TGG 0.491267 1_2:-73527254 Msa0091410:CDS
ATCGCCGCAGCTGCCCCGGC+CGG 0.491724 1_2:+73526516 None:intergenic
GATGGGTCCAATGGGTCAGA+TGG 0.493165 1_2:-73526583 Msa0091410:CDS
AGGAGCATGCCGGCAGTGCA+AGG 0.498242 1_2:-73526543 Msa0091410:CDS
AAAATATATCCGTACTACTT+AGG 0.499474 1_2:+73528535 None:intergenic
GTTACCGGCCGGGGCAGCTG+CGG 0.501977 1_2:-73526520 Msa0091410:CDS
ACCAATGCCATCACACCCTA+TGG 0.502702 1_2:-73526253 Msa0091410:CDS
GCCATGAACATCCCAGGTAA+TGG 0.503054 1_2:-73527203 Msa0091410:CDS
CCTGGGATGTTCATGGCAGC+AGG 0.506128 1_2:+73527209 None:intergenic
TGCCTGGAGGCCCTTGACCA+TGG 0.506822 1_2:+73527339 None:intergenic
GGTGATGGTATGATGATGAA+TGG 0.512661 1_2:-73527233 Msa0091410:CDS
GGTCAAGGGCCTCCAGGCAA+TGG 0.514555 1_2:-73527335 Msa0091410:CDS
CATCCATCAATGAACTATAT+GGG 0.516767 1_2:-73526282 Msa0091410:CDS
GCATAATAACAAAATGATGA+TGG 0.517505 1_2:-73527294 Msa0091410:CDS
GATGGCAGCAATGAATAAGA+TGG 0.517515 1_2:-73526601 Msa0091410:CDS
ATTGAACCCATCTGACCCAT+TGG 0.518800 1_2:+73526576 None:intergenic
TCTGTAGAATTGTCTTCTCA+AGG 0.518947 1_2:-73528211 Msa0091410:intron
TATGGGTCCAATGGGCCAGA+TGG 0.519343 1_2:-73526637 Msa0091410:CDS
ATTTGCATGTTCTTAAACTG+AGG 0.523768 1_2:+73527611 None:intergenic
ATGAATGGTGGCTATTATCA+AGG 0.526298 1_2:-73526495 Msa0091410:CDS
TGTTTATTATCTTGCAGCAC+CGG 0.528186 1_2:-73528598 Msa0091410:five_prime_UTR
ATGGTCGTGGGCCACAGCTA+GGG 0.529327 1_2:-73527259 Msa0091410:CDS
ATGGGTCCAATGGGCCAGAT+GGG 0.532006 1_2:-73526636 Msa0091410:CDS
CTGAATGTGCCTAAGTAGTA+CGG 0.535365 1_2:-73528544 Msa0091410:five_prime_UTR
ATATAGTTCATTGATGGATG+TGG 0.537347 1_2:+73526285 None:intergenic
TTGTGAAGGTTGTGAGCAGA+AGG 0.537353 1_2:-73528178 Msa0091410:CDS
CTCCTCCTTTACCATTACCT+GGG 0.537413 1_2:+73527192 None:intergenic
AACATCCCAGGTAATGGTAA+AGG 0.537780 1_2:-73527197 Msa0091410:CDS
ATAGCAACAACAACAGCAAA+GGG 0.537937 1_2:-73526836 Msa0091410:CDS
GGGTGTGATGGCATTGGTGG+CGG 0.538638 1_2:+73526258 None:intergenic
GCTATGATGCAGAATGGTCG+TGG 0.539141 1_2:-73527272 Msa0091410:CDS
CACGGACATGGTCATGGCCA+TGG 0.540291 1_2:-73527356 Msa0091410:CDS
GGTCCCATATAGTTCATTGA+TGG 0.543358 1_2:+73526279 None:intergenic
ATGCAGATGAAGGGTAAAAG+TGG 0.544101 1_2:-73527113 Msa0091410:CDS
ATAGGGTGTGATGGCATTGG+TGG 0.545253 1_2:+73526255 None:intergenic
GCCATAGGGTGTGATGGCAT+TGG 0.546440 1_2:+73526252 None:intergenic
GAGGAGTTTGGTCACGGACA+TGG 0.551855 1_2:-73527368 Msa0091410:CDS
ATAATAAACAGCTACAAACT+AGG 0.552187 1_2:+73528611 None:intergenic
TGGGTTCAATGGACCAAATG+AGG 0.553719 1_2:-73526563 Msa0091410:CDS
TAATGGAGGTGGTAAGAAAG+GGG 0.555785 1_2:-73527066 Msa0091410:CDS
ATGGTCATGGCCATGGTCAA+GGG 0.556259 1_2:-73527349 Msa0091410:CDS
CCCTTCATCTGCATTTGCAT+AGG 0.556545 1_2:+73527122 None:intergenic
AATGAATAAGATGGGTCCAA+TGG 0.557145 1_2:-73526592 Msa0091410:CDS
CCAGGTAATGGTAAAGGAGG+AGG 0.560490 1_2:-73527191 Msa0091410:CDS
TGGGAAAGGTGCTCCTGCCA+AGG 0.561931 1_2:-73526706 Msa0091410:CDS
GCAGCTGCGGCGATGAATGG+TGG 0.562369 1_2:-73526507 Msa0091410:CDS
AGGAGTGAATTAGGCACCAC+AGG 0.563041 1_2:+73525943 None:intergenic
GACTTTGATATCACTCCTCA+TGG 0.564860 1_2:-73526762 Msa0091410:CDS
CCTCCATACATCATATGTTG+TGG 0.564896 1_2:+73526315 None:intergenic
ACAACAACAACAGCAATACA+TGG 0.565187 1_2:-73526427 Msa0091410:CDS
GCACAGTTTCAAAATCCTAA+AGG 0.569465 1_2:-73527518 Msa0091410:CDS
CCTCATGGTAAAAGTGGTAA+GGG 0.569715 1_2:-73526747 Msa0091410:CDS
AAGTAATTAATTACTAGTAG+TGG 0.570079 1_2:-73526172 Msa0091410:three_prime_UTR
AACAAGCCTCAGAATCAAAA+GGG 0.570080 1_2:-73527563 Msa0091410:CDS
TTTGGTCACGGACATGGTCA+TGG 0.570828 1_2:-73527362 Msa0091410:CDS
GGTAATAATAATGGTAATGG+GGG 0.572168 1_2:-73526663 Msa0091410:CDS
GTAACGACAACCTTATGAGC+AGG 0.573000 1_2:-73526006 Msa0091410:three_prime_UTR
TGTGATACTCTGTCATTGAC+TGG 0.574552 1_2:+73525969 None:intergenic
ATGCAAATGGATAATAACAA+AGG 0.575532 1_2:-73527596 Msa0091410:CDS
AAGGTTAATATCCATTGTGA+AGG 0.575780 1_2:-73528192 Msa0091410:CDS
TGGTAATAATAATGGTAATG+GGG 0.579408 1_2:-73526664 Msa0091410:CDS
ATGGGTCCAATGGGTCAGAT+GGG 0.580478 1_2:-73526582 Msa0091410:CDS
GTGAATATAGATGCAGAACA+AGG 0.583193 1_2:-73527770 Msa0091410:CDS
GTGATGGTATGATGATGAAT+GGG 0.583869 1_2:-73527232 Msa0091410:CDS
GCAAATGGATAATAACAAAG+GGG 0.584331 1_2:-73527594 Msa0091410:CDS
TGAGTGATTGGATCTGCCAT+AGG 0.585575 1_2:+73526237 None:intergenic
CCTGCTGCCATGAACATCCC+AGG 0.587642 1_2:-73527209 Msa0091410:CDS
GGTAATGGTAAAGGAGGAGG+TGG 0.588777 1_2:-73527188 Msa0091410:CDS
AATAAAGGGGAAAAGCAAAA+GGG 0.595467 1_2:-73527023 Msa0091410:CDS
ATGGCAGCAATGAATAAGAT+GGG 0.598736 1_2:-73526600 Msa0091410:CDS
TATAGATGCAGAACAAGGGA+AGG 0.601009 1_2:-73527765 Msa0091410:CDS
GGATCTGCCATAGGGTGTGA+TGG 0.601407 1_2:+73526246 None:intergenic
CAACATATGATGTATGGAGG+AGG 0.605393 1_2:-73526312 Msa0091410:CDS
CCTATGCAAATGCAGATGAA+GGG 0.607502 1_2:-73527122 Msa0091410:CDS
TTCATCATCATACCATCACC+AGG 0.608129 1_2:+73527236 None:intergenic
AATAGCAACAACAACAGCAA+AGG 0.608297 1_2:-73526837 Msa0091410:CDS
AATGGAAATGGAAATGGGAA+AGG 0.608664 1_2:-73526720 Msa0091410:CDS
ATCCCAGGTAATGGTAAAGG+AGG 0.609225 1_2:-73527194 Msa0091410:CDS
ACTCTGTCATTGACTGGCAG+TGG 0.610829 1_2:+73525975 None:intergenic
GGGAAAGGTGCTCCTGCCAA+GGG 0.613724 1_2:-73526705 Msa0091410:CDS
GGACCAAATGAGGAGCATGC+CGG 0.615075 1_2:-73526553 Msa0091410:CDS
CATGGTAAAAGTGGTAAGGG+TGG 0.615769 1_2:-73526744 Msa0091410:CDS
TGCAGAACAAGGGAAGGTGT+TGG 0.615855 1_2:-73527759 Msa0091410:CDS
GGAGCATGCCGGCAGTGCAA+GGG 0.616628 1_2:-73526542 Msa0091410:CDS
GAAGAAGAGGAGTTTGGTCA+CGG 0.617819 1_2:-73527374 Msa0091410:CDS
GATGGGTGCAATGAATCAGA+TGG 0.620881 1_2:-73526619 Msa0091410:CDS
GGCAATGCCAATAATGGACA+TGG 0.622193 1_2:-73526684 Msa0091410:CDS
AATGGAGGTGGTAAGAAAGG+GGG 0.629262 1_2:-73527065 Msa0091410:CDS
CCATCACCAGGCCCTAGCTG+TGG 0.636272 1_2:+73527248 None:intergenic
AAAGGGGAAAAGCAAAAGGG+TGG 0.640635 1_2:-73527020 Msa0091410:CDS
TCATAAGGTTGTCGTTACAC+AGG 0.641578 1_2:+73526011 None:intergenic
CCACAACATATGATGTATGG+AGG 0.641920 1_2:-73526315 Msa0091410:CDS
ACAACCTTATGAGCAGGACA+TGG 0.650595 1_2:-73526000 Msa0091410:three_prime_UTR
GAGTGATTGGATCTGCCATA+GGG 0.655708 1_2:+73526238 None:intergenic
ATATGATGTATGGAGGAGGA+AGG 0.656963 1_2:-73526308 Msa0091410:CDS
AAACATGCTGAACTATGGGG+TGG 0.661564 1_2:-73527683 Msa0091410:CDS
TGAATATAGATGCAGAACAA+GGG 0.662709 1_2:-73527769 Msa0091410:CDS
TGGAGGTAAGAAGAATAAAG+GGG 0.662757 1_2:-73527036 Msa0091410:CDS
CAAATGGATAATAACAAAGG+GGG 0.663697 1_2:-73527593 Msa0091410:CDS
ATGATGGCTATGATGCAGAA+TGG 0.663851 1_2:-73527278 Msa0091410:CDS
CAGTTTCAAAATCCTAAAGG+AGG 0.665835 1_2:-73527515 Msa0091410:CDS
GAGGAATTTGATGAGAGTGA+TGG 0.668256 1_2:-73527434 Msa0091410:CDS
CAGCAACAACAAATGCAGCA+AGG 0.669858 1_2:-73526357 Msa0091410:CDS
TCTGCTCACAACCTTCACAA+TGG 0.671031 1_2:+73528181 None:intergenic
GGGAAACATGCTGAACTATG+GGG 0.688345 1_2:-73527686 Msa0091410:CDS
TGCCCAAATCCATTGCCTGG+AGG 0.700160 1_2:+73527326 None:intergenic
CTATGATGCAGAATGGTCGT+GGG 0.701836 1_2:-73527271 Msa0091410:CDS
TAAAAGTGGAAATTACGGTG+AGG 0.728158 1_2:-73527099 Msa0091410:CDS
ACAGAGTATCACATGTCCTG+TGG 0.743374 1_2:-73525959 Msa0091410:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTGTCTTTTTTTTT+TGG - chr1_2:73528374-73528393 Msa0091410:exon 10.0%
!!! TTATTTTGTCTTTTTTTTTT+GGG - chr1_2:73528375-73528394 Msa0091410:exon 10.0%
!!! AGATATTTTTTTTTCTATAG+AGG + chr1_2:73526049-73526068 None:intergenic 15.0%
!!! TGAACTTTTTTATGTTTATA+TGG - chr1_2:73526597-73526616 Msa0091410:CDS 15.0%
!!! TATTTTGTCTTTTTTTTTTG+GGG - chr1_2:73528376-73528395 Msa0091410:exon 15.0%
!! AAGAAATCATACAATTTAAT+GGG + chr1_2:73528602-73528621 None:intergenic 15.0%
!! ATAAATAAGTAAGAAGAACA+AGG + chr1_2:73526181-73526200 None:intergenic 20.0%
!! AAACAAAAACTTTACTATGT+CGG - chr1_2:73526486-73526505 Msa0091410:CDS 20.0%
!! AAAAAACATGAAATTAAGGA+GGG + chr1_2:73526536-73526555 None:intergenic 20.0%
!!! ATCATTTTGTTATTATGCAT+AGG + chr1_2:73527208-73527227 None:intergenic 20.0%
!! AAAAATGGTAAAGGTAAAAA+CGG - chr1_2:73527547-73527566 Msa0091410:CDS 20.0%
!! ATGGTAATAATAATGGTAAT+GGG - chr1_2:73527839-73527858 Msa0091410:intron 20.0%
!! AAGTAATTAATTACTAGTAG+TGG - chr1_2:73528332-73528351 Msa0091410:intron 20.0%
!! GAAGAAATCATACAATTTAA+TGG + chr1_2:73528603-73528622 None:intergenic 20.0%
! ATAATAAACAGCTACAAACT+AGG + chr1_2:73525896-73525915 None:intergenic 25.0%
! AAAATATATCCGTACTACTT+AGG + chr1_2:73525972-73525991 None:intergenic 25.0%
!!! TTTTTTCTATAGAGGCAAAA+GGG + chr1_2:73526041-73526060 None:intergenic 25.0%
!!! TTTTTTTCTATAGAGGCAAA+AGG + chr1_2:73526042-73526061 None:intergenic 25.0%
! ACAAGATATGATGAAAATTC+AGG - chr1_2:73526150-73526169 Msa0091410:three_prime_UTR 25.0%
! AATCTGTACTTATGTTTAAC+TGG - chr1_2:73526250-73526269 Msa0091410:CDS 25.0%
!!! ACTTATGTTTAACTGGTTTT+TGG - chr1_2:73526257-73526276 Msa0091410:CDS 25.0%
! ACATGTTAACTTTACTATGT+CGG - chr1_2:73526445-73526464 Msa0091410:CDS 25.0%
! GAAAAAACATGAAATTAAGG+AGG + chr1_2:73526537-73526556 None:intergenic 25.0%
! AGGGAAAAAACATGAAATTA+AGG + chr1_2:73526540-73526559 None:intergenic 25.0%
! TCACAAAAACATCATAAAGT+TGG + chr1_2:73526580-73526599 None:intergenic 25.0%
! ATGCAAATGGATAATAACAA+AGG - chr1_2:73526908-73526927 Msa0091410:CDS 25.0%
! TGCAAATGGATAATAACAAA+GGG - chr1_2:73526909-73526928 Msa0091410:CDS 25.0%
!!! TGTTAATTTTGATTTGTCTG+AGG - chr1_2:73527048-73527067 Msa0091410:CDS 25.0%
! GCATAATAACAAAATGATGA+TGG - chr1_2:73527210-73527229 Msa0091410:CDS 25.0%
! AATTATGCAAAAGCCAAAAA+AGG - chr1_2:73527343-73527362 Msa0091410:CDS 25.0%
!!! ATCCATAATATCTCCTTTTT+TGG + chr1_2:73527359-73527378 None:intergenic 25.0%
! AATAGTAGCAAGAAGAAAAA+TGG - chr1_2:73527532-73527551 Msa0091410:CDS 25.0%
!!! GTTTTCTAGTTAAGTTTCTA+GGG - chr1_2:73527578-73527597 Msa0091410:CDS 25.0%
! ATTATTACCATGTCCATTAT+TGG + chr1_2:73527830-73527849 None:intergenic 25.0%
! AATGGACATGGTAATAATAA+TGG - chr1_2:73527832-73527851 Msa0091410:intron 25.0%
! CATGGTAATAATAATGGTAA+TGG - chr1_2:73527838-73527857 Msa0091410:intron 25.0%
!! TGGTAATAATAATGGTAATG+GGG - chr1_2:73527840-73527859 Msa0091410:intron 25.0%
!! TCCATTAAATTTTGTTGCAA+TGG - chr1_2:73528399-73528418 Msa0091410:five_prime_UTR 25.0%
! ACCATTGCAACAAAATTTAA+TGG + chr1_2:73528403-73528422 None:intergenic 25.0%
!! TTAAATTTTGTTGCAATGGT+AGG - chr1_2:73528403-73528422 Msa0091410:five_prime_UTR 25.0%
AGAAGTGATAAATTGATTGC+CGG + chr1_2:73525928-73525947 None:intergenic 30.0%
AGAAGAGAAGAAATAGTTGT+TGG + chr1_2:73526085-73526104 None:intergenic 30.0%
GTACAGATTCAACTTTAACT+AGG + chr1_2:73526239-73526258 None:intergenic 30.0%
AAGGTTAATATCCATTGTGA+AGG - chr1_2:73526312-73526331 Msa0091410:CDS 30.0%
AAACTGCTTCAGAAAATTGA+AGG - chr1_2:73526354-73526373 Msa0091410:CDS 30.0%
AAGAAAAGAAGAAAGAGACA+TGG + chr1_2:73526390-73526409 None:intergenic 30.0%
CATCATAAAGTTGGAAACTT+TGG + chr1_2:73526571-73526590 None:intergenic 30.0%
TGAATATAGATGCAGAACAA+GGG - chr1_2:73526735-73526754 Msa0091410:CDS 30.0%
TCAAAAAGCTGAAAAGTTCA+GGG - chr1_2:73526798-73526817 Msa0091410:CDS 30.0%
ATTTGCATGTTCTTAAACTG+AGG + chr1_2:73526896-73526915 None:intergenic 30.0%
TCAGTTTAAGAACATGCAAA+TGG - chr1_2:73526895-73526914 Msa0091410:CDS 30.0%
GCAAATGGATAATAACAAAG+GGG - chr1_2:73526910-73526929 Msa0091410:CDS 30.0%
CAAATGGATAATAACAAAGG+GGG - chr1_2:73526911-73526930 Msa0091410:CDS 30.0%
! TTCATATCTTTTCCTCCTTT+AGG + chr1_2:73527004-73527023 None:intergenic 30.0%
!! ACATGTTTCTGAGATTTGTT+GGG + chr1_2:73527031-73527050 None:intergenic 30.0%
!! AACATGTTTCTGAGATTTGT+TGG + chr1_2:73527032-73527051 None:intergenic 30.0%
!!! TAATTTTGATTTGTCTGAGG+AGG - chr1_2:73527051-73527070 Msa0091410:CDS 30.0%
AGCCAAAAAAGGAGATATTA+TGG - chr1_2:73527354-73527373 Msa0091410:CDS 30.0%
AAGGGTAAAAGTGGAAATTA+CGG - chr1_2:73527400-73527419 Msa0091410:CDS 30.0%
AATTACGGTGAGGTAAAAAA+TGG - chr1_2:73527415-73527434 Msa0091410:CDS 30.0%
ATGGAGGTAAGAAGAATAAA+GGG - chr1_2:73527467-73527486 Msa0091410:CDS 30.0%
AATAAAGGGGAAAAGCAAAA+GGG - chr1_2:73527481-73527500 Msa0091410:CDS 30.0%
AGCAAGAAGAAAAATGGTAA+AGG - chr1_2:73527538-73527557 Msa0091410:CDS 30.0%
!!! GGTTTTCTAGTTAAGTTTCT+AGG - chr1_2:73527577-73527596 Msa0091410:CDS 30.0%
CTTGGAAAAAAGAGCAAAAA+GGG - chr1_2:73527601-73527620 Msa0091410:CDS 30.0%
!!! TCCATTGTTTTTGTTCTTGT+CGG + chr1_2:73527638-73527657 None:intergenic 30.0%
AAAGGGAAAAAAGGTAAGAA+AGG - chr1_2:73527685-73527704 Msa0091410:CDS 30.0%
AGGTAAGAAAGGTGAAAAAT+TGG - chr1_2:73527696-73527715 Msa0091410:CDS 30.0%
!! GGTAATAATAATGGTAATGG+GGG - chr1_2:73527841-73527860 Msa0091410:intron 30.0%
TATCCACAACATATGATGTA+TGG - chr1_2:73528186-73528205 Msa0091410:CDS 30.0%
! ATATAGTTCATTGATGGATG+TGG + chr1_2:73528222-73528241 None:intergenic 30.0%
ACATCCATCAATGAACTATA+TGG - chr1_2:73528221-73528240 Msa0091410:intron 30.0%
CATCCATCAATGAACTATAT+GGG - chr1_2:73528222-73528241 Msa0091410:intron 30.0%
AGGAAAATGTGCAAGATTTA+AGG - chr1_2:73528423-73528442 Msa0091410:five_prime_UTR 30.0%
!!! TAAGTTTTGAGGAGTGAATT+AGG + chr1_2:73528573-73528592 None:intergenic 30.0%
!! ATGGGTTAAGATAAGTTTTG+AGG + chr1_2:73528584-73528603 None:intergenic 30.0%
TGTTTATTATCTTGCAGCAC+CGG - chr1_2:73525906-73525925 Msa0091410:three_prime_UTR 35.0%
TCTGTAGAATTGTCTTCTCA+AGG - chr1_2:73526293-73526312 Msa0091410:CDS 35.0%
TAAGGAGGGTTTAGAAACAT+GGG + chr1_2:73526522-73526541 None:intergenic 35.0%
TTAAGGAGGGTTTAGAAACA+TGG + chr1_2:73526523-73526542 None:intergenic 35.0%
GGAAACTTTGGATGAATGAA+GGG + chr1_2:73526559-73526578 None:intergenic 35.0%
TGGAAACTTTGGATGAATGA+AGG + chr1_2:73526560-73526579 None:intergenic 35.0%
GTGAATATAGATGCAGAACA+AGG - chr1_2:73526734-73526753 Msa0091410:CDS 35.0%
! CTGAACTTTTCAGCTTTTTG+AGG + chr1_2:73526799-73526818 None:intergenic 35.0%
CTCAAAAAGCTGAAAAGTTC+AGG - chr1_2:73526797-73526816 Msa0091410:CDS 35.0%
AACAAGCCTCAGAATCAAAA+GGG - chr1_2:73526941-73526960 Msa0091410:CDS 35.0%
!! TTTTGACCCTTTTGATTCTG+AGG + chr1_2:73526950-73526969 None:intergenic 35.0%
CAGAATCAAAAGGGTCAAAA+AGG - chr1_2:73526950-73526969 Msa0091410:CDS 35.0%
AATCAAAAGGGTCAAAAAGG+TGG - chr1_2:73526953-73526972 Msa0091410:CDS 35.0%
GCACAGTTTCAAAATCCTAA+AGG - chr1_2:73526986-73527005 Msa0091410:CDS 35.0%
CAGTTTCAAAATCCTAAAGG+AGG - chr1_2:73526989-73527008 Msa0091410:CDS 35.0%
!! CTATGACGATGATTTTGATG+AGG - chr1_2:73527105-73527124 Msa0091410:CDS 35.0%
! TTTTGATGAGGATGAAGAAG+AGG - chr1_2:73527117-73527136 Msa0091410:CDS 35.0%
! GTGATGGTATGATGATGAAT+GGG - chr1_2:73527272-73527291 Msa0091410:CDS 35.0%
TAAAAGTGGAAATTACGGTG+AGG - chr1_2:73527405-73527424 Msa0091410:CDS 35.0%
GGTGAGGTAAAAAATGGTAA+TGG - chr1_2:73527421-73527440 Msa0091410:CDS 35.0%
!! GAGGTAAAAAATGGTAATGG+AGG - chr1_2:73527424-73527443 Msa0091410:CDS 35.0%
!! GTAAAAAATGGTAATGGAGG+TGG - chr1_2:73527427-73527446 Msa0091410:CDS 35.0%
GATGGAGGTAAGAAGAATAA+AGG - chr1_2:73527466-73527485 Msa0091410:CDS 35.0%
TGGAGGTAAGAAGAATAAAG+GGG - chr1_2:73527468-73527487 Msa0091410:CDS 35.0%
GAATAAAGGGGAAAAGCAAA+AGG - chr1_2:73527480-73527499 Msa0091410:CDS 35.0%
AATGGTAAAGGTAAAAACGG+TGG - chr1_2:73527550-73527569 Msa0091410:CDS 35.0%
GCTTGGAAAAAAGAGCAAAA+AGG - chr1_2:73527600-73527619 Msa0091410:CDS 35.0%
GACAAGAACAAAAACAATGG+AGG - chr1_2:73527637-73527656 Msa0091410:CDS 35.0%
AAGAACAAAAACAATGGAGG+AGG - chr1_2:73527640-73527659 Msa0091410:CDS 35.0%
AATAGCAACAACAACAGCAA+AGG - chr1_2:73527667-73527686 Msa0091410:CDS 35.0%
ATAGCAACAACAACAGCAAA+GGG - chr1_2:73527668-73527687 Msa0091410:CDS 35.0%
AACAACAGCAAAGGGAAAAA+AGG - chr1_2:73527676-73527695 Msa0091410:CDS 35.0%
GTGGAAATGGAAATGGAAAT+GGG - chr1_2:73527779-73527798 Msa0091410:CDS 35.0%
AATGGAAATGGAAATGGGAA+AGG - chr1_2:73527784-73527803 Msa0091410:CDS 35.0%
ATGGCAGCAATGAATAAGAT+GGG - chr1_2:73527904-73527923 Msa0091410:intron 35.0%
AATGAATAAGATGGGTCCAA+TGG - chr1_2:73527912-73527931 Msa0091410:intron 35.0%
ATGAATAAGATGGGTCCAAT+GGG - chr1_2:73527913-73527932 Msa0091410:intron 35.0%
ATGAATGGTGGCTATTATCA+AGG - chr1_2:73528009-73528028 Msa0091410:intron 35.0%
ACAACAACAACAGCAATACA+TGG - chr1_2:73528077-73528096 Msa0091410:intron 35.0%
TCACTGAAAACATGAGTGAT+TGG + chr1_2:73528282-73528301 None:intergenic 35.0%
CTGAATGTGCCTAAGTAGTA+CGG - chr1_2:73525960-73525979 Msa0091410:three_prime_UTR 40.0%
!! AGGGTATTGTTGGAATGCAT+TGG + chr1_2:73526022-73526041 None:intergenic 40.0%
!! TAGAGGCAAAAGGGTATTGT+TGG + chr1_2:73526032-73526051 None:intergenic 40.0%
! TGTTGTTGTTGTTGTGATGC+AGG - chr1_2:73526701-73526720 Msa0091410:CDS 40.0%
! GTTGTTGTTGTTGTGATGCA+GGG - chr1_2:73526702-73526721 Msa0091410:CDS 40.0%
! TTGTTGTTGTTGTGATGCAG+GGG - chr1_2:73526703-73526722 Msa0091410:CDS 40.0%
TATAGATGCAGAACAAGGGA+AGG - chr1_2:73526739-73526758 Msa0091410:CDS 40.0%
AGGGAAACATGCTGAACTAT+GGG - chr1_2:73526817-73526836 Msa0091410:CDS 40.0%
CAACAAGCCTCAGAATCAAA+AGG - chr1_2:73526940-73526959 Msa0091410:CDS 40.0%
GAGGAATTTGATGAGAGTGA+TGG - chr1_2:73527070-73527089 Msa0091410:CDS 40.0%
ATGATGGCTATGATGCAGAA+TGG - chr1_2:73527226-73527245 Msa0091410:CDS 40.0%
TTCATCATCATACCATCACC+AGG + chr1_2:73527271-73527290 None:intergenic 40.0%
! GGTGATGGTATGATGATGAA+TGG - chr1_2:73527271-73527290 Msa0091410:CDS 40.0%
! AACATCCCAGGTAATGGTAA+AGG - chr1_2:73527307-73527326 Msa0091410:CDS 40.0%
ACCTATGCAAATGCAGATGA+AGG - chr1_2:73527381-73527400 Msa0091410:CDS 40.0%
CCTATGCAAATGCAGATGAA+GGG - chr1_2:73527382-73527401 Msa0091410:CDS 40.0%
ATGCAGATGAAGGGTAAAAG+TGG - chr1_2:73527391-73527410 Msa0091410:CDS 40.0%
! GTAATGGAGGTGGTAAGAAA+GGG - chr1_2:73527437-73527456 Msa0091410:CDS 40.0%
TAATGGAGGTGGTAAGAAAG+GGG - chr1_2:73527438-73527457 Msa0091410:CDS 40.0%
!! CTAGTTAAGTTTCTAGGGCT+TGG - chr1_2:73527583-73527602 Msa0091410:CDS 40.0%
GGAAAAAAGAGCAAAAAGGG+AGG - chr1_2:73527604-73527623 Msa0091410:CDS 40.0%
AAAAAGAGCAAAAAGGGAGG+AGG - chr1_2:73527607-73527626 Msa0091410:CDS 40.0%
GCCGACAAGAACAAAAACAA+TGG - chr1_2:73527634-73527653 Msa0091410:CDS 40.0%
AACAAAAACAATGGAGGAGG+TGG - chr1_2:73527643-73527662 Msa0091410:CDS 40.0%
GAGGAGTGATATCAAAGTCT+TGG + chr1_2:73527741-73527760 None:intergenic 40.0%
GACTTTGATATCACTCCTCA+TGG - chr1_2:73527742-73527761 Msa0091410:CDS 40.0%
ATCACTCCTCATGGTAAAAG+TGG - chr1_2:73527751-73527770 Msa0091410:CDS 40.0%
TCCTCATGGTAAAAGTGGTA+AGG - chr1_2:73527756-73527775 Msa0091410:CDS 40.0%
CCTCATGGTAAAAGTGGTAA+GGG - chr1_2:73527757-73527776 Msa0091410:CDS 40.0%
AAAAGTGGTAAGGGTGGAAA+TGG - chr1_2:73527766-73527785 Msa0091410:CDS 40.0%
GGTGGAAATGGAAATGGAAA+TGG - chr1_2:73527778-73527797 Msa0091410:CDS 40.0%
GATGGCAGCAATGAATAAGA+TGG - chr1_2:73527903-73527922 Msa0091410:intron 40.0%
TGCTGTTGCTGATAAGGATT+TGG + chr1_2:73528051-73528070 None:intergenic 40.0%
CCTCCATACATCATATGTTG+TGG + chr1_2:73528192-73528211 None:intergenic 40.0%
CCACAACATATGATGTATGG+AGG - chr1_2:73528189-73528208 Msa0091410:CDS 40.0%
CAACATATGATGTATGGAGG+AGG - chr1_2:73528192-73528211 Msa0091410:CDS 40.0%
ATATGATGTATGGAGGAGGA+AGG - chr1_2:73528196-73528215 Msa0091410:CDS 40.0%
GGTCCCATATAGTTCATTGA+TGG + chr1_2:73528228-73528247 None:intergenic 40.0%
!! AGTAGTGGCTAGTTTGTTTC+AGG - chr1_2:73528347-73528366 Msa0091410:intron 40.0%
TCATAAGGTTGTCGTTACAC+AGG + chr1_2:73528496-73528515 None:intergenic 40.0%
TGTGATACTCTGTCATTGAC+TGG + chr1_2:73528538-73528557 None:intergenic 40.0%
TCTGCTCACAACCTTCACAA+TGG + chr1_2:73526326-73526345 None:intergenic 45.0%
TTGTGAAGGTTGTGAGCAGA+AGG - chr1_2:73526326-73526345 Msa0091410:CDS 45.0%
!! AGCTTTTTGAGGAGCTTTGC+TGG + chr1_2:73526788-73526807 None:intergenic 45.0%
CAGGGAAACATGCTGAACTA+TGG - chr1_2:73526816-73526835 Msa0091410:CDS 45.0%
GGGAAACATGCTGAACTATG+GGG - chr1_2:73526818-73526837 Msa0091410:CDS 45.0%
AAACATGCTGAACTATGGGG+TGG - chr1_2:73526821-73526840 Msa0091410:CDS 45.0%
GAGGATGAAGAAGAGGAGTT+TGG - chr1_2:73527124-73527143 Msa0091410:CDS 45.0%
GAAGAAGAGGAGTTTGGTCA+CGG - chr1_2:73527130-73527149 Msa0091410:CDS 45.0%
CTATGATGCAGAATGGTCGT+GGG - chr1_2:73527233-73527252 Msa0091410:CDS 45.0%
ACCATTACCTGGGATGTTCA+TGG + chr1_2:73527305-73527324 None:intergenic 45.0%
! ATCCCAGGTAATGGTAAAGG+AGG - chr1_2:73527310-73527329 Msa0091410:CDS 45.0%
CTCCTCCTTTACCATTACCT+GGG + chr1_2:73527315-73527334 None:intergenic 45.0%
CCCTTCATCTGCATTTGCAT+AGG + chr1_2:73527385-73527404 None:intergenic 45.0%
!! GGTAATGGAGGTGGTAAGAA+AGG - chr1_2:73527436-73527455 Msa0091410:CDS 45.0%
AATGGAGGTGGTAAGAAAGG+GGG - chr1_2:73527439-73527458 Msa0091410:CDS 45.0%
AAAGGGGAAAAGCAAAAGGG+TGG - chr1_2:73527484-73527503 Msa0091410:CDS 45.0%
GGTAAAGGTAAAAACGGTGG+TGG - chr1_2:73527553-73527572 Msa0091410:CDS 45.0%
! AAAGGTAAAAACGGTGGTGG+TGG - chr1_2:73527556-73527575 Msa0091410:CDS 45.0%
!! CCCTTACCACTTTTACCATG+AGG + chr1_2:73527760-73527779 None:intergenic 45.0%
CATGGTAAAAGTGGTAAGGG+TGG - chr1_2:73527760-73527779 Msa0091410:CDS 45.0%
GGTAAGGGTGGAAATGGAAA+TGG - chr1_2:73527772-73527791 Msa0091410:CDS 45.0%
TCCATTATTGGCATTGCCCT+TGG + chr1_2:73527818-73527837 None:intergenic 45.0%
!! GGCAATGCCAATAATGGACA+TGG - chr1_2:73527820-73527839 Msa0091410:intron 45.0%
!! TAATGGTAATGGGGGCCATA+TGG - chr1_2:73527849-73527868 Msa0091410:intron 45.0%
!! AATGGTAATGGGGGCCATAT+GGG - chr1_2:73527850-73527869 Msa0091410:intron 45.0%
TCTGATTCATTGCACCCATC+TGG + chr1_2:73527885-73527904 None:intergenic 45.0%
GATGGGTGCAATGAATCAGA+TGG - chr1_2:73527885-73527904 Msa0091410:intron 45.0%
ATTGAACCCATCTGACCCAT+TGG + chr1_2:73527931-73527950 None:intergenic 45.0%
! AATGGGTCAGATGGGTTCAA+TGG - chr1_2:73527930-73527949 Msa0091410:intron 45.0%
TGGGTTCAATGGACCAAATG+AGG - chr1_2:73527941-73527960 Msa0091410:intron 45.0%
! TGCTGTTGCTGTTGCTGATA+AGG + chr1_2:73528057-73528076 None:intergenic 45.0%
CAGCAACAACAAATGCAGCA+AGG - chr1_2:73528147-73528166 Msa0091410:intron 45.0%
GAGTGATTGGATCTGCCATA+GGG + chr1_2:73528269-73528288 None:intergenic 45.0%
TGAGTGATTGGATCTGCCAT+AGG + chr1_2:73528270-73528289 None:intergenic 45.0%
GTAACGACAACCTTATGAGC+AGG - chr1_2:73528498-73528517 Msa0091410:five_prime_UTR 45.0%
ACAACCTTATGAGCAGGACA+TGG - chr1_2:73528504-73528523 Msa0091410:five_prime_UTR 45.0%
! ACAGAGTATCACATGTCCTG+TGG - chr1_2:73528545-73528564 Msa0091410:five_prime_UTR 45.0%
! TGCAGAACAAGGGAAGGTGT+TGG - chr1_2:73526745-73526764 Msa0091410:CDS 50.0%
TTTGGTCACGGACATGGTCA+TGG - chr1_2:73527142-73527161 Msa0091410:CDS 50.0%
ATGGTCATGGCCATGGTCAA+GGG - chr1_2:73527155-73527174 Msa0091410:CDS 50.0%
GCTATGATGCAGAATGGTCG+TGG - chr1_2:73527232-73527251 Msa0091410:CDS 50.0%
GCCATGAACATCCCAGGTAA+TGG - chr1_2:73527301-73527320 Msa0091410:CDS 50.0%
CCTCCTCCTTTACCATTACC+TGG + chr1_2:73527316-73527335 None:intergenic 50.0%
! CCAGGTAATGGTAAAGGAGG+AGG - chr1_2:73527313-73527332 Msa0091410:CDS 50.0%
! GGTAATGGTAAAGGAGGAGG+TGG - chr1_2:73527316-73527335 Msa0091410:CDS 50.0%
AATGGTAAAGGAGGAGGTGG+TGG - chr1_2:73527319-73527338 Msa0091410:CDS 50.0%
GGTAAGAAAGGGGGTGATGA+TGG - chr1_2:73527448-73527467 Msa0091410:CDS 50.0%
!! AAGAAAGGGGGTGATGATGG+AGG - chr1_2:73527451-73527470 Msa0091410:CDS 50.0%
GGGAAAAGCAAAAGGGTGGT+GGG - chr1_2:73527488-73527507 Msa0091410:CDS 50.0%
GGAAAAGCAAAAGGGTGGTG+GGG - chr1_2:73527489-73527508 Msa0091410:CDS 50.0%
! GAAAAGCAAAAGGGTGGTGG+GGG - chr1_2:73527490-73527509 Msa0091410:CDS 50.0%
TTATTGGCATTGCCCTTGGC+AGG + chr1_2:73527814-73527833 None:intergenic 50.0%
GCCAAGGGCAATGCCAATAA+TGG - chr1_2:73527814-73527833 Msa0091410:intron 50.0%
ATGGGTCCAATGGGTCAGAT+GGG - chr1_2:73527922-73527941 Msa0091410:intron 50.0%
! ATAGGGTGTGATGGCATTGG+TGG + chr1_2:73528252-73528271 None:intergenic 50.0%
ACCAATGCCATCACACCCTA+TGG - chr1_2:73528251-73528270 Msa0091410:intron 50.0%
! ACTCTGTCATTGACTGGCAG+TGG + chr1_2:73528532-73528551 None:intergenic 50.0%
AGGAGTGAATTAGGCACCAC+AGG + chr1_2:73528564-73528583 None:intergenic 50.0%
!! CAAGGGAAGGTGTTGGTGAC+AGG - chr1_2:73526752-73526771 Msa0091410:CDS 55.0%
GAGGAGTTTGGTCACGGACA+TGG - chr1_2:73527136-73527155 Msa0091410:CDS 55.0%
CATGGTCATGGCCATGGTCA+AGG - chr1_2:73527154-73527173 Msa0091410:CDS 55.0%
! GGCCTCCAGGCAATGGATTT+GGG - chr1_2:73527176-73527195 Msa0091410:CDS 55.0%
TGCCCAAATCCATTGCCTGG+AGG + chr1_2:73527181-73527200 None:intergenic 55.0%
TGCTGCCCAAATCCATTGCC+TGG + chr1_2:73527184-73527203 None:intergenic 55.0%
GGGGAAAAGCAAAAGGGTGG+TGG - chr1_2:73527487-73527506 Msa0091410:CDS 55.0%
!! AAAAGGGTGGTGGGGGAGAT+TGG - chr1_2:73527497-73527516 Msa0091410:CDS 55.0%
!! AAAGGGTGGTGGGGGAGATT+GGG - chr1_2:73527498-73527517 Msa0091410:CDS 55.0%
TCTGGCCCATTGGACCCATA+TGG + chr1_2:73527867-73527886 None:intergenic 55.0%
TATGGGTCCAATGGGCCAGA+TGG - chr1_2:73527867-73527886 Msa0091410:intron 55.0%
ATGGGTCCAATGGGCCAGAT+GGG - chr1_2:73527868-73527887 Msa0091410:intron 55.0%
ATTGCACCCATCTGGCCCAT+TGG + chr1_2:73527877-73527896 None:intergenic 55.0%
GATGGGTCCAATGGGTCAGA+TGG - chr1_2:73527921-73527940 Msa0091410:intron 55.0%
! GGACCAAATGAGGAGCATGC+CGG - chr1_2:73527951-73527970 Msa0091410:intron 55.0%
GCCATAGGGTGTGATGGCAT+TGG + chr1_2:73528255-73528274 None:intergenic 55.0%
GGATCTGCCATAGGGTGTGA+TGG + chr1_2:73528261-73528280 None:intergenic 55.0%
GGCACCATGTCCTGCTCATA+AGG + chr1_2:73528511-73528530 None:intergenic 55.0%
CACGGACATGGTCATGGCCA+TGG - chr1_2:73527148-73527167 Msa0091410:CDS 60.0%
! GGGCCTCCAGGCAATGGATT+TGG - chr1_2:73527175-73527194 Msa0091410:CDS 60.0%
AATGGTCGTGGGCCACAGCT+AGG - chr1_2:73527244-73527263 Msa0091410:CDS 60.0%
ATGGTCGTGGGCCACAGCTA+GGG - chr1_2:73527245-73527264 Msa0091410:CDS 60.0%
CCTGGGATGTTCATGGCAGC+AGG + chr1_2:73527298-73527317 None:intergenic 60.0%
CCTGCTGCCATGAACATCCC+AGG - chr1_2:73527295-73527314 Msa0091410:CDS 60.0%
!! AAGGGTGGTGGGGGAGATTG+GGG - chr1_2:73527499-73527518 Msa0091410:CDS 60.0%
!! TGGGAAAGGTGCTCCTGCCA+AGG - chr1_2:73527798-73527817 Msa0091410:intron 60.0%
!! GGGAAAGGTGCTCCTGCCAA+GGG - chr1_2:73527799-73527818 Msa0091410:intron 60.0%
TGGGGGCCATATGGGTCCAA+TGG - chr1_2:73527858-73527877 Msa0091410:intron 60.0%
GGGGGCCATATGGGTCCAAT+GGG - chr1_2:73527859-73527878 Msa0091410:intron 60.0%
CTGCCGGCATGCTCCTCATT+TGG + chr1_2:73527957-73527976 None:intergenic 60.0%
!! GGGTGTGATGGCATTGGTGG+CGG + chr1_2:73528249-73528268 None:intergenic 60.0%
TGCCTGGAGGCCCTTGACCA+TGG + chr1_2:73527168-73527187 None:intergenic 65.0%
GGTCAAGGGCCTCCAGGCAA+TGG - chr1_2:73527169-73527188 Msa0091410:CDS 65.0%
CCATCACCAGGCCCTAGCTG+TGG + chr1_2:73527259-73527278 None:intergenic 65.0%
CCACAGCTAGGGCCTGGTGA+TGG - chr1_2:73527256-73527275 Msa0091410:CDS 65.0%
! AGGAGCATGCCGGCAGTGCA+AGG - chr1_2:73527961-73527980 Msa0091410:intron 65.0%
GGAGCATGCCGGCAGTGCAA+GGG - chr1_2:73527962-73527981 Msa0091410:intron 65.0%
GCCGGCAGTGCAAGGGTTAC+CGG - chr1_2:73527969-73527988 Msa0091410:intron 65.0%
GCCGGTAACCCTTGCACTGC+CGG + chr1_2:73527973-73527992 None:intergenic 65.0%
GCAGTGCAAGGGTTACCGGC+CGG - chr1_2:73527973-73527992 Msa0091410:intron 65.0%
CAGTGCAAGGGTTACCGGCC+GGG - chr1_2:73527974-73527993 Msa0091410:intron 65.0%
AGTGCAAGGGTTACCGGCCG+GGG - chr1_2:73527975-73527994 Msa0091410:intron 65.0%
ATTCATCGCCGCAGCTGCCC+CGG + chr1_2:73527995-73528014 None:intergenic 65.0%
GCAGCTGCGGCGATGAATGG+TGG - chr1_2:73527997-73528016 Msa0091410:intron 65.0%
GGCCATGGTCAAGGGCCTCC+AGG - chr1_2:73527163-73527182 Msa0091410:CDS 70.0%
GGGGCAGCTGCGGCGATGAA+TGG - chr1_2:73527994-73528013 Msa0091410:intron 70.0%
CGTGGGCCACAGCTAGGGCC+TGG - chr1_2:73527250-73527269 Msa0091410:CDS 75.0%
GTTACCGGCCGGGGCAGCTG+CGG - chr1_2:73527984-73528003 Msa0091410:intron 75.0%
! ATCGCCGCAGCTGCCCCGGC+CGG + chr1_2:73527991-73528010 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73525880 73528646 73525880 ID=Msa0091410;Name=Msa0091410
chr1_2 mRNA 73525880 73528646 73525880 ID=Msa0091410-mRNA-1;Parent=Msa0091410;Name=Msa0091410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=262|1|1|1|1|1|3|314|571
chr1_2 exon 73525880 73527803 73525880 ID=Msa0091410-mRNA-1:exon:25808;Parent=Msa0091410-mRNA-1
chr1_2 exon 73528151 73528226 73528151 ID=Msa0091410-mRNA-1:exon:25807;Parent=Msa0091410-mRNA-1
chr1_2 exon 73528355 73528646 73528355 ID=Msa0091410-mRNA-1:exon:25806;Parent=Msa0091410-mRNA-1
chr1_2 five_prime_UTR 73528385 73528646 73528385 ID=Msa0091410-mRNA-1:five_prime_utr;Parent=Msa0091410-mRNA-1
chr1_2 CDS 73528355 73528384 73528355 ID=Msa0091410-mRNA-1:cds;Parent=Msa0091410-mRNA-1
chr1_2 CDS 73528151 73528226 73528151 ID=Msa0091410-mRNA-1:cds;Parent=Msa0091410-mRNA-1
chr1_2 CDS 73526194 73527803 73526194 ID=Msa0091410-mRNA-1:cds;Parent=Msa0091410-mRNA-1
chr1_2 three_prime_UTR 73525880 73526193 73525880 ID=Msa0091410-mRNA-1:three_prime_utr;Parent=Msa0091410-mRNA-1
Gene Sequence

>Msa0091410

ATGAGTAAACAAGATATGATGAAAATTCAGAATTGTCTTCTCAAGGTTAATATCCATTGTGAAGGTTGTGAGCAGAAGGTTAAGAAACTGCTTCAGAAAATTGAAGGGGTGTATTCTGTGAATATAGATGCAGAACAAGGGAAGGTGTTGGTGACAGGTGATGTAGATCCAGCAAAGCTCCTCAAAAAGCTGAAAAGTTCAGGGAAACATGCTGAACTATGGGGTGGACAGAAAGCTATGATGATTAATCAAAATCAAAACTTTCAACAACAACAACCTCAGTTTAAGAACATGCAAATGGATAATAACAAAGGGGGTAAGAACAACAAGCCTCAGAATCAAAAGGGTCAAAAAGGTGGTGTTCAAGTAGCACAGTTTCAAAATCCTAAAGGAGGAAAAGATATGAAAGTGCCCAACAAATCTCAGAAACATGTTAATTTTGATTTGTCTGAGGAGGAATTTGATGAGAGTGATGGCGATTTTGATGACTATGACGATGATTTTGATGAGGATGAAGAAGAGGAGTTTGGTCACGGACATGGTCATGGCCATGGTCAAGGGCCTCCAGGCAATGGATTTGGGCAGCATCCTATGCATAATAACAAAATGATGATGGCTATGATGCAGAATGGTCGTGGGCCACAGCTAGGGCCTGGTGATGGTATGATGATGAATGGGCCTGCTGCCATGAACATCCCAGGTAATGGTAAAGGAGGAGGTGGTGGTAATTATGCAAAAGCCAAAAAAGGAGATATTATGGATCTACCTATGCAAATGCAGATGAAGGGTAAAAGTGGAAATTACGGTGAGGTAAAAAATGGTAATGGAGGTGGTAAGAAAGGGGGTGATGATGGAGGTAAGAAGAATAAAGGGGAAAAGCAAAAGGGTGGTGGGGGAGATTGGGGAGATGAAAAAAATAGTAGCAAGAAGAAAAATGGTAAAGGTAAAAACGGTGGTGGTGGTTTTCTAGTTAAGTTTCTAGGGCTTGGAAAAAAGAGCAAAAAGGGAGGAGGTGCAGCCGACAAGAACAAAAACAATGGAGGAGGTGGAAATAGCAACAACAACAGCAAAGGGAAAAAAGGTAAGAAAGGTGAAAAATTGGATAAAGTTGAATTTGATTTCCAAGACTTTGATATCACTCCTCATGGTAAAAGTGGTAAGGGTGGAAATGGAAATGGAAATGGGAAAGGTGCTCCTGCCAAGGGCAATGCCAATAATGGACATGGTAATAATAATGGTAATGGGGGCCATATGGGTCCAATGGGCCAGATGGGTGCAATGAATCAGATGGCAGCAATGAATAAGATGGGTCCAATGGGTCAGATGGGTTCAATGGACCAAATGAGGAGCATGCCGGCAGTGCAAGGGTTACCGGCCGGGGCAGCTGCGGCGATGAATGGTGGCTATTATCAAGGAATGCAGCAGATGCAACCAAATCCTTATCAGCAACAGCAACAGCAACAACAACAACAGCAATACATGGCTATGATGATGCAGCAGCAACAGCAGCAACAAATGCAGCAGCAACTGCAGCAACAACAAATGCAGCAAGGAAATATGAACAGCATGTATCCACAACATATGATGTATGGAGGAGGAAGGCCACATCCATCAATGAACTATATGGGACCGCCACCAATGCCATCACACCCTATGGCAGATCCAATCACTCATGTTTTCAGTGATGAGAACACTGAGAGCTGTAGCATCATGTAA
Protein sequence

>Msa0091410

MSKQDMMKIQNCLLKVNIHCEGCEQKVKKLLQKIEGVYSVNIDAEQGKVLVTGDVDPAKLLKKLKSSGKHAELWGGQKAMMINQNQNFQQQQPQFKNMQMDNNKGGKNNKPQNQKGQKGGVQVAQFQNPKGGKDMKVPNKSQKHVNFDLSEEEFDESDGDFDDYDDDFDEDEEEEFGHGHGHGHGQGPPGNGFGQHPMHNNKMMMAMMQNGRGPQLGPGDGMMMNGPAAMNIPGNGKGGGGGNYAKAKKGDIMDLPMQMQMKGKSGNYGEVKNGNGGGKKGGDDGGKKNKGEKQKGGGGDWGDEKNSSKKKNGKGKNGGGGFLVKFLGLGKKSKKGGGAADKNKNNGGGGNSNNNSKGKKGKKGEKLDKVEFDFQDFDITPHGKSGKGGNGNGNGKGAPAKGNANNGHGNNNGNGGHMGPMGQMGAMNQMAAMNKMGPMGQMGSMDQMRSMPAVQGLPAGAAAAMNGGYYQGMQQMQPNPYQQQQQQQQQQQYMAMMMQQQQQQQMQQQLQQQQMQQGNMNSMYPQHMMYGGGRPHPSMNYMGPPPMPSHPMADPITHVFSDENTESCSIM*