Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0156370 | XP_003590036.1 | 95.000 | 600 | 30 | 0 | 8 | 607 | 1 | 600 | 0.0 | 1170 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0156370 | sp|Q96524|CRY2_ARATH | 66.229 | 533 | 171 | 3 | 10 | 539 | 6 | 532 | 0.0 | 734 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0156370 | G7I4R1 | 95.000 | 600 | 30 | 0 | 8 | 607 | 1 | 600 | 0.0 | 1170 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001830 | Msa0156370 | 0.801577 | 8.433970e-49 | -8.615850e-47 |
Msa0003640 | Msa0156370 | 0.836534 | 8.844107e-57 | -8.615850e-47 |
Msa0010490 | Msa0156370 | 0.810438 | 1.152618e-50 | -8.615850e-47 |
Msa0015930 | Msa0156370 | 0.979153 | 2.390095e-147 | -8.615850e-47 |
Msa0020390 | Msa0156370 | 0.801186 | 1.013809e-48 | -8.615850e-47 |
Msa0023010 | Msa0156370 | 0.851503 | 8.508192e-61 | -8.615850e-47 |
Msa0023040 | Msa0156370 | 0.861422 | 1.037353e-63 | -8.615850e-47 |
Msa0023050 | Msa0156370 | 0.846863 | 1.662656e-59 | -8.615850e-47 |
Msa0026680 | Msa0156370 | 0.855614 | 5.604831e-62 | -8.615850e-47 |
Msa0032580 | Msa0156370 | 0.801790 | 7.626190e-49 | -8.615850e-47 |
Msa0033110 | Msa0156370 | 0.827837 | 1.254819e-54 | -8.615850e-47 |
Msa0033260 | Msa0156370 | 0.824267 | 8.854290e-54 | -8.615850e-47 |
Msa0055180 | Msa0156370 | 0.806567 | 7.727623e-50 | -8.615850e-47 |
Msa0058300 | Msa0156370 | 0.842608 | 2.330362e-58 | -8.615850e-47 |
Msa0070860 | Msa0156370 | 0.840929 | 6.467708e-58 | -8.615850e-47 |
Msa0075960 | Msa0156370 | 0.834498 | 2.894255e-56 | -8.615850e-47 |
Msa0091410 | Msa0156370 | 0.826023 | 3.405454e-54 | -8.615850e-47 |
Msa0097780 | Msa0156370 | 0.809361 | 1.965471e-50 | -8.615850e-47 |
Msa0100740 | Msa0156370 | 0.800312 | 1.528996e-48 | -8.615850e-47 |
Msa0104430 | Msa0156370 | 0.808144 | 3.578742e-50 | -8.615850e-47 |
Msa0115190 | Msa0156370 | 0.802519 | 5.399099e-49 | -8.615850e-47 |
Msa0118540 | Msa0156370 | 0.815137 | 1.078321e-51 | -8.615850e-47 |
Msa0118790 | Msa0156370 | 0.838550 | 2.690733e-57 | -8.615850e-47 |
Msa0118810 | Msa0156370 | 0.834796 | 2.436296e-56 | -8.615850e-47 |
Msa0138630 | Msa0156370 | 0.826413 | 2.750083e-54 | -8.615850e-47 |
Msa0140630 | Msa0156370 | 0.884767 | 1.446714e-71 | -8.615850e-47 |
Msa0145080 | Msa0156370 | 0.842403 | 2.641077e-58 | -8.615850e-47 |
Msa0145160 | Msa0156370 | 0.814408 | 1.564673e-51 | -8.615850e-47 |
Msa0145730 | Msa0156370 | 0.817364 | 3.425683e-52 | -8.615850e-47 |
Msa0156370 | Msa0159340 | 0.819084 | 1.398586e-52 | -8.615850e-47 |
Msa0156370 | Msa0162120 | 0.840418 | 8.801222e-58 | -8.615850e-47 |
Msa0156370 | Msa0162130 | 0.853739 | 1.957682e-61 | -8.615850e-47 |
Msa0156370 | Msa0172970 | 0.803986 | 2.682192e-49 | -8.615850e-47 |
Msa0156370 | Msa0222310 | 0.825511 | 4.504696e-54 | -8.615850e-47 |
Msa0156370 | Msa0265430 | 0.814974 | 1.172300e-51 | -8.615850e-47 |
Msa0156370 | Msa0279240 | 0.806072 | 9.824523e-50 | -8.615850e-47 |
Msa0156370 | Msa0295710 | 0.810046 | 1.400516e-50 | -8.615850e-47 |
Msa0156370 | Msa0301620 | 0.803341 | 3.650521e-49 | -8.615850e-47 |
Msa0156370 | Msa0339040 | 0.820704 | 5.960613e-53 | -8.615850e-47 |
Msa0156370 | Msa0340380 | 0.822679 | 2.082189e-53 | -8.615850e-47 |
Msa0156370 | Msa0345350 | 0.832271 | 1.039982e-55 | -8.615850e-47 |
Msa0156370 | Msa0345390 | 0.820924 | 5.304566e-53 | -8.615850e-47 |
Msa0156370 | Msa0350880 | 0.808733 | 2.679455e-50 | -8.615850e-47 |
Msa0156370 | Msa0355140 | 0.844835 | 5.908653e-59 | -8.615850e-47 |
Msa0156370 | Msa0375310 | 0.819058 | 1.417441e-52 | -8.615850e-47 |
Msa0156370 | Msa0381500 | 0.883017 | 6.401628e-71 | -8.615850e-47 |
Msa0156370 | Msa0387820 | 0.817197 | 3.735579e-52 | -8.615850e-47 |
Msa0156370 | Msa0397540 | 0.809831 | 1.557803e-50 | -8.615850e-47 |
Msa0156370 | Msa0402210 | 0.851417 | 8.994522e-61 | -8.615850e-47 |
Msa0156370 | Msa0421500 | 0.828398 | 9.190649e-55 | -8.615850e-47 |
Msa0156370 | Msa0435980 | -0.834059 | 3.730787e-56 | -8.615850e-47 |
Msa0156370 | Msa0445330 | 0.849749 | 2.648020e-60 | -8.615850e-47 |
Msa0156370 | Msa0469560 | -0.876989 | 8.999996e-69 | -8.615850e-47 |
Msa0156370 | Msa0483770 | 0.843547 | 1.310316e-58 | -8.615850e-47 |
Msa0156370 | Msa0492890 | 0.841799 | 3.815814e-58 | -8.615850e-47 |
Msa0156370 | Msa0513990 | 0.833400 | 5.451793e-56 | -8.615850e-47 |
Msa0156370 | Msa0515270 | -0.888832 | 4.159289e-73 | -8.615850e-47 |
Msa0156370 | Msa0519950 | 0.878929 | 1.886060e-69 | -8.615850e-47 |
Msa0156370 | Msa0527690 | -0.831115 | 2.004133e-55 | -8.615850e-47 |
Msa0156370 | Msa0534900 | 0.807525 | 4.845129e-50 | -8.615850e-47 |
Msa0156370 | Msa0550120 | 0.918034 | 2.562236e-86 | -8.615850e-47 |
Msa0156370 | Msa0550150 | 0.892271 | 1.851109e-74 | -8.615850e-47 |
Msa0156370 | Msa0581280 | 0.814091 | 1.837865e-51 | -8.615850e-47 |
Msa0156370 | Msa0585830 | 0.819764 | 9.785520e-53 | -8.615850e-47 |
Msa0156370 | Msa0588260 | 0.838309 | 3.104858e-57 | -8.615850e-47 |
Msa0156370 | Msa0605630 | 0.903350 | 3.800385e-79 | -8.615850e-47 |
Msa0156370 | Msa0605640 | 0.824536 | 7.654155e-54 | -8.615850e-47 |
Msa0156370 | Msa0605650 | 0.898850 | 3.541090e-77 | -8.615850e-47 |
Msa0156370 | Msa0609660 | -0.800726 | 1.259138e-48 | -8.615850e-47 |
Msa0156370 | Msa0620890 | 0.813815 | 2.114942e-51 | -8.615850e-47 |
Msa0156370 | Msa0628030 | 0.814328 | 1.628996e-51 | -8.615850e-47 |
Msa0156370 | Msa0631350 | 0.813255 | 2.807735e-51 | -8.615850e-47 |
Msa0156370 | Msa0646580 | 0.900338 | 8.097654e-78 | -8.615850e-47 |
Msa0156370 | Msa0650500 | -0.809994 | 1.436847e-50 | -8.615850e-47 |
Msa0156370 | Msa0663490 | 0.815817 | 7.610021e-52 | -8.615850e-47 |
Msa0156370 | Msa0686210 | 0.882413 | 1.064195e-70 | -8.615850e-47 |
Msa0156370 | Msa0686220 | 0.838082 | 3.551673e-57 | -8.615850e-47 |
Msa0156370 | Msa0692240 | -0.819540 | 1.100670e-52 | -8.615850e-47 |
Msa0156370 | Msa0694610 | 0.810305 | 1.231267e-50 | -8.615850e-47 |
Msa0156370 | Msa0698540 | 0.804338 | 2.265982e-49 | -8.615850e-47 |
Msa0156370 | Msa0708930 | 0.830852 | 2.325350e-55 | -8.615850e-47 |
Msa0156370 | Msa0717230 | -0.861918 | 7.319987e-64 | -8.615850e-47 |
Msa0156370 | Msa0737600 | 0.845125 | 4.936164e-59 | -8.615850e-47 |
Msa0156370 | Msa0738380 | 0.805262 | 1.453421e-49 | -8.615850e-47 |
Msa0156370 | Msa0741230 | 0.846042 | 2.784691e-59 | -8.615850e-47 |
Msa0156370 | Msa0764680 | -0.847591 | 1.049592e-59 | -8.615850e-47 |
Msa0156370 | Msa0779360 | 0.810371 | 1.191843e-50 | -8.615850e-47 |
Msa0156370 | Msa0783960 | 0.800421 | 1.452990e-48 | -8.615850e-47 |
Msa0156370 | Msa0784860 | 0.808285 | 3.338485e-50 | -8.615850e-47 |
Msa0156370 | Msa0795730 | 0.855209 | 7.353686e-62 | -8.615850e-47 |
Msa0156370 | Msa0799680 | -0.858551 | 7.621829e-63 | -8.615850e-47 |
Msa0156370 | Msa0802240 | 0.817541 | 3.125783e-52 | -8.615850e-47 |
Msa0156370 | Msa0816730 | 0.822496 | 2.296424e-53 | -8.615850e-47 |
Msa0156370 | Msa0817730 | 0.826285 | 2.949773e-54 | -8.615850e-47 |
Msa0156370 | Msa0818750 | 0.860309 | 2.259457e-63 | -8.615850e-47 |
Msa0156370 | Msa0833470 | 0.848503 | 5.880809e-60 | -8.615850e-47 |
Msa0156370 | Msa0844220 | -0.831026 | 2.107331e-55 | -8.615850e-47 |
Msa0156370 | Msa0856960 | 0.813507 | 2.472214e-51 | -8.615850e-47 |
Msa0156370 | Msa0858180 | 0.826210 | 3.073849e-54 | -8.615850e-47 |
Msa0156370 | Msa0861860 | 0.852591 | 4.176243e-61 | -8.615850e-47 |
Msa0156370 | Msa0867720 | 0.822005 | 2.984688e-53 | -8.615850e-47 |
Msa0156370 | Msa0867730 | 0.909049 | 8.748906e-82 | -8.615850e-47 |
Msa0156370 | Msa0887250 | 0.842401 | 2.644389e-58 | -8.615850e-47 |
Msa0156370 | Msa0927260 | 0.808371 | 3.201128e-50 | -8.615850e-47 |
Msa0156370 | Msa0968610 | 0.883730 | 3.502173e-71 | -8.615850e-47 |
Msa0156370 | Msa1021520 | 0.817451 | 3.275172e-52 | -8.615850e-47 |
Msa0156370 | Msa1029050 | 0.852473 | 4.511960e-61 | -8.615850e-47 |
Msa0156370 | Msa1030620 | 0.852657 | 3.998811e-61 | -8.615850e-47 |
Msa0156370 | Msa1037420 | 0.847481 | 1.125438e-59 | -8.615850e-47 |
Msa0156370 | Msa1113700 | -0.829044 | 6.414267e-55 | -8.615850e-47 |
Msa0156370 | Msa1115080 | 0.815051 | 1.126798e-51 | -8.615850e-47 |
Msa0156370 | Msa1120130 | 0.832266 | 1.042598e-55 | -8.615850e-47 |
Msa0156370 | Msa1123810 | 0.842353 | 2.723664e-58 | -8.615850e-47 |
Msa0156370 | Msa1130820 | -0.821897 | 3.162195e-53 | -8.615850e-47 |
Msa0156370 | Msa1133230 | 0.820938 | 5.263373e-53 | -8.615850e-47 |
Msa0156370 | Msa1133250 | 0.806889 | 6.605874e-50 | -8.615850e-47 |
Msa0156370 | Msa1172610 | -0.822783 | 1.969671e-53 | -8.615850e-47 |
Msa0156370 | Msa1176720 | 0.800165 | 1.638293e-48 | -8.615850e-47 |
Msa0156370 | Msa1180500 | 0.865516 | 5.581312e-65 | -8.615850e-47 |
Msa0156370 | Msa1181250 | 0.808931 | 2.429714e-50 | -8.615850e-47 |
Msa0156370 | Msa1181330 | 0.804686 | 1.917880e-49 | -8.615850e-47 |
Msa0156370 | Msa1206270 | 0.818005 | 2.456574e-52 | -8.615850e-47 |
Msa0156370 | Msa1206290 | 0.823731 | 1.183080e-53 | -8.615850e-47 |
Msa0156370 | Msa1209200 | 0.814140 | 1.793119e-51 | -8.615850e-47 |
Msa0156370 | Msa1212190 | 0.835185 | 1.944014e-56 | -8.615850e-47 |
Msa0156370 | Msa1212270 | 0.838308 | 3.106018e-57 | -8.615850e-47 |
Msa0156370 | Msa1231840 | 0.888341 | 6.433756e-73 | -8.615850e-47 |
Msa0156370 | Msa1238840 | 0.803386 | 3.573957e-49 | -8.615850e-47 |
Msa0156370 | Msa1254730 | 0.804332 | 2.272905e-49 | -8.615850e-47 |
Msa0156370 | Msa1256810 | 0.811935 | 5.457685e-51 | -8.615850e-47 |
Msa0156370 | Msa1259910 | 0.833611 | 4.828209e-56 | -8.615850e-47 |
Msa0156370 | Msa1274560 | 0.872703 | 2.594631e-67 | -8.615850e-47 |
Msa0156370 | Msa1280320 | 0.800282 | 1.550539e-48 | -8.615850e-47 |
Msa0156370 | Msa1280340 | 0.848786 | 4.909809e-60 | -8.615850e-47 |
Msa0156370 | Msa1312520 | 0.863977 | 1.692916e-64 | -8.615850e-47 |
Msa0156370 | Msa1351540 | 0.813937 | 1.987531e-51 | -8.615850e-47 |
Msa0156370 | Msa1353750 | 0.837462 | 5.124402e-57 | -8.615850e-47 |
Msa0156370 | Msa1384360 | -0.835757 | 1.393006e-56 | -8.615850e-47 |
Msa0156370 | Msa1385770 | 0.823436 | 1.386352e-53 | -8.615850e-47 |
Msa0156370 | Msa1406670 | -0.814465 | 1.519442e-51 | -8.615850e-47 |
Msa0156370 | Msa1409240 | 0.824016 | 1.014296e-53 | -8.615850e-47 |
Msa0156370 | Msa1434140 | 0.815141 | 1.076240e-51 | -8.615850e-47 |
Msa0156370 | Msa1435390 | 0.803892 | 2.805620e-49 | -8.615850e-47 |
Msa0156370 | Msa1448870 | -0.818764 | 1.653517e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0156370 | MtrunA17_Chr1g0167721 | 95.000 | 600 | 30 | 0 | 8 | 607 | 1 | 600 | 0.0 | 1170 |
Msa0156370 | MtrunA17_Chr1g0187801 | 76.198 | 605 | 137 | 6 | 6 | 607 | 1 | 601 | 0.0 | 941 |
Msa0156370 | MtrunA17_Chr5g0426121 | 52.836 | 617 | 261 | 6 | 7 | 606 | 5 | 608 | 0.0 | 658 |
Msa0156370 | MtrunA17_Chr4g0003821 | 28.376 | 511 | 324 | 15 | 11 | 498 | 15 | 506 | 4.07e-49 | 179 |
Msa0156370 | MtrunA17_Chr3g0138841 | 27.181 | 493 | 285 | 17 | 4 | 451 | 91 | 554 | 4.71e-30 | 125 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0156370 | AT1G04400.1 | 66.229 | 533 | 171 | 3 | 10 | 539 | 6 | 532 | 0.0 | 734 |
Msa0156370 | AT1G04400.2 | 66.229 | 533 | 171 | 3 | 10 | 539 | 6 | 532 | 0.0 | 734 |
Msa0156370 | AT4G08920.1 | 52.445 | 593 | 270 | 5 | 12 | 601 | 15 | 598 | 0.0 | 633 |
Msa0156370 | AT3G15620.1 | 29.356 | 528 | 325 | 19 | 11 | 510 | 26 | 533 | 1.73e-53 | 192 |
Msa0156370 | AT3G15620.2 | 28.910 | 422 | 256 | 18 | 11 | 404 | 26 | 431 | 9.74e-35 | 137 |
Msa0156370 | AT5G24850.1 | 28.358 | 469 | 292 | 17 | 4 | 449 | 79 | 526 | 4.01e-33 | 134 |
Find 161 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTGATCCTTCAATGTTTA+AGG | 0.114298 | 1_4:+22391567 | Msa0156370:CDS |
CTATCTCCGTATATTCATTT+TGG | 0.143302 | 1_4:+22391340 | Msa0156370:CDS |
TTCGATTCTCCCTACTAATT+TGG | 0.190421 | 1_4:-22389801 | None:intergenic |
GTTGTGTTTAATCATCTTTA+TGG | 0.220247 | 1_4:+22390254 | Msa0156370:CDS |
TAAAACTGTCCTTCCTCTTT+AGG | 0.235821 | 1_4:-22390080 | None:intergenic |
GAAGCAGTCTCTTTCTCATT+TGG | 0.269217 | 1_4:+22390130 | Msa0156370:CDS |
TTGTCCTTCAAGAAAACTTT+TGG | 0.273008 | 1_4:-22392267 | None:intergenic |
TAGTACTCTTAAAGCACTTT+TGG | 0.293721 | 1_4:+22390202 | Msa0156370:CDS |
GTTGGAATTCTCGCCAATTC+AGG | 0.307627 | 1_4:-22392024 | None:intergenic |
CTCTTTGGATTCTGAAGTAT+TGG | 0.315237 | 1_4:-22392333 | None:intergenic |
TGCAAGCATCTATTCCAAAA+AGG | 0.318620 | 1_4:-22390948 | None:intergenic |
TTGCCACTTGTTCCCTCCTC+TGG | 0.320587 | 1_4:+22389616 | Msa0156370:five_prime_UTR |
TTAGGAGGATCATCACTCTT+TGG | 0.321111 | 1_4:-22392348 | None:intergenic |
TCTATGTCGATGATTGGTTT+TGG | 0.322368 | 1_4:-22392123 | None:intergenic |
CAGGATTGTCCTCAATTCTT+AGG | 0.325372 | 1_4:-22390004 | None:intergenic |
ATAGGACCATAGTTTGGTTT+AGG | 0.327813 | 1_4:+22389976 | Msa0156370:CDS |
TGTTGCTTATACCTTGGAAA+TGG | 0.329641 | 1_4:+22391707 | Msa0156370:CDS |
CTCATTCCTGCATCAACTAA+TGG | 0.329714 | 1_4:-22391616 | None:intergenic |
GTTCTAGCTTTAGTTGTTTG+TGG | 0.334866 | 1_4:+22389281 | Msa0156370:five_prime_UTR |
GATAGTGAACAATGAAACTA+TGG | 0.343032 | 1_4:-22389064 | None:intergenic |
TGGAGATTGTACTTAAAGTT+AGG | 0.343565 | 1_4:+22389894 | Msa0156370:five_prime_UTR |
CAAAATGAATATACGGAGAT+AGG | 0.361934 | 1_4:-22391339 | None:intergenic |
GTTGCTTATACCTTGGAAAT+GGG | 0.366312 | 1_4:+22391708 | Msa0156370:CDS |
AATTCTCCAAAATGAATATA+CGG | 0.366624 | 1_4:-22391346 | None:intergenic |
ATTAATTGACAAGGAGGAAT+AGG | 0.377359 | 1_4:-22390993 | None:intergenic |
ACCAATCATCGACATAGATT+TGG | 0.378217 | 1_4:+22392128 | Msa0156370:CDS |
TCGTCAATGGCTACCTGAAT+TGG | 0.379883 | 1_4:+22392011 | Msa0156370:CDS |
AGCTTACTAATAGAATAATA+AGG | 0.381124 | 1_4:+22392642 | Msa0156370:three_prime_UTR |
ATTAGCCGATCCAAATTAGT+AGG | 0.386265 | 1_4:+22389791 | Msa0156370:five_prime_UTR |
TGATCTTGAAAGTGATATCT+TGG | 0.390550 | 1_4:+22391765 | Msa0156370:CDS |
ATCCTTCAATGTTTAAGGCT+TGG | 0.397995 | 1_4:+22391572 | Msa0156370:CDS |
ATCAGAAAATGGGTATGAAT+AGG | 0.398859 | 1_4:+22389958 | Msa0156370:CDS |
TGCAGGAATGAGAGAGCTTT+GGG | 0.404630 | 1_4:+22391627 | Msa0156370:CDS |
ATGCAGGAATGAGAGAGCTT+TGG | 0.404880 | 1_4:+22391626 | Msa0156370:CDS |
GCCAAATCTATGTCGATGAT+TGG | 0.412225 | 1_4:-22392129 | None:intergenic |
TGAAGGTGAAGTGAAGGTTT+TGG | 0.425221 | 1_4:+22389921 | Msa0156370:five_prime_UTR |
AAAACAAAGTGGCATAATCT+TGG | 0.428652 | 1_4:+22389473 | Msa0156370:five_prime_UTR |
GATCAGTCACTGAAATCTCT+TGG | 0.432839 | 1_4:+22390152 | Msa0156370:CDS |
CTCCAAGCCTTAAACATTGA+AGG | 0.434912 | 1_4:-22391574 | None:intergenic |
GTGCTACTCCTCAAGGTCTC+TGG | 0.435040 | 1_4:-22389824 | None:intergenic |
TCCCTCCTCTGGAGGTAATC+CGG | 0.441364 | 1_4:+22389627 | Msa0156370:five_prime_UTR |
CTTCAATGTTTAAGGCTTGG+AGG | 0.448036 | 1_4:+22391575 | Msa0156370:CDS |
TTGAAATTCAGAATTGAAGT+TGG | 0.449738 | 1_4:+22389177 | Msa0156370:five_prime_UTR |
CGCTCAAGCTCATGACCATC+AGG | 0.452817 | 1_4:-22391814 | None:intergenic |
AGAGCATCAGGTGTAGAGTT+AGG | 0.453032 | 1_4:+22392090 | Msa0156370:CDS |
GTATGAATAGGACCATAGTT+TGG | 0.457722 | 1_4:+22389970 | Msa0156370:CDS |
TTGGGTTGGCAGTATATCTC+CGG | 0.458839 | 1_4:+22391784 | Msa0156370:CDS |
ACAACCCACTTGACTTAGTC+TGG | 0.460390 | 1_4:-22389872 | None:intergenic |
ATGAGAGAGCTTTGGGCGAC+CGG | 0.460862 | 1_4:+22391634 | Msa0156370:CDS |
CTTAGCAAGCGGACTGATAC+CGG | 0.467453 | 1_4:+22392429 | Msa0156370:CDS |
ATGTTTAAGGCTTGGAGGCT+AGG | 0.469697 | 1_4:+22391580 | Msa0156370:CDS |
CGATAAAGAGGATCGAGAAC+AGG | 0.478530 | 1_4:+22392392 | Msa0156370:CDS |
GTCCCTCCTAAACCAAACTA+TGG | 0.481040 | 1_4:-22389982 | None:intergenic |
TAGTTAAAAGTAGAAATTTG+AGG | 0.483511 | 1_4:+22389742 | Msa0156370:five_prime_UTR |
TTTCTGTGCAAAGCTACAAT+GGG | 0.484165 | 1_4:+22390862 | Msa0156370:CDS |
CCTACTGTGCTAAGAGCATC+AGG | 0.485757 | 1_4:+22392078 | Msa0156370:CDS |
TGAGGATAGGAACATTGTTA+TGG | 0.486111 | 1_4:-22392537 | None:intergenic |
ACTGCTTGAACTCTGTCTCT+TGG | 0.489451 | 1_4:-22392499 | None:intergenic |
TTAGCTAGAGCATGGTCTCC+AGG | 0.494738 | 1_4:+22391217 | Msa0156370:CDS |
CCACTTGTTCCCTCCTCTGG+AGG | 0.494775 | 1_4:+22389619 | Msa0156370:five_prime_UTR |
CTTCTTCGTCAAATGATCAA+AGG | 0.495047 | 1_4:+22392307 | Msa0156370:CDS |
CTGCATTAGCTGCTGCTGCA+AGG | 0.495862 | 1_4:+22390024 | Msa0156370:CDS |
AAGGCGAATACGTTCGTCAA+TGG | 0.498860 | 1_4:+22391998 | Msa0156370:CDS |
TGCATTAGCTGCTGCTGCAA+GGG | 0.499127 | 1_4:+22390025 | Msa0156370:CDS |
GGACCATAGTTTGGTTTAGG+AGG | 0.499764 | 1_4:+22389979 | Msa0156370:CDS |
AGACTAAGTCAAGTGGGTTG+TGG | 0.500125 | 1_4:+22389874 | Msa0156370:five_prime_UTR |
GATCTTGAAAGTGATATCTT+GGG | 0.500193 | 1_4:+22391766 | Msa0156370:CDS |
CTTTATTTGGTGTCCTAAAG+AGG | 0.502443 | 1_4:+22390067 | Msa0156370:CDS |
TTAGCTGCTGCTGCAAGGGA+TGG | 0.503348 | 1_4:+22390029 | Msa0156370:CDS |
CGGGTAGAGTGTCGAGGTGG+TGG | 0.504560 | 1_4:+22390105 | Msa0156370:CDS |
TTCTTCGTCAAATGATCAAA+GGG | 0.505200 | 1_4:+22392308 | Msa0156370:CDS |
TGTCTGACAGTGCCTCGAAC+CGG | 0.508036 | 1_4:-22389646 | None:intergenic |
TTGAGGAGTAGCACACTCTC+AGG | 0.511028 | 1_4:+22389833 | Msa0156370:five_prime_UTR |
TGTAGGAGATATCTGATCAC+TGG | 0.512203 | 1_4:-22389575 | None:intergenic |
GCTTGGAGGCTAGGTAGGAC+TGG | 0.519332 | 1_4:+22391589 | Msa0156370:CDS |
CACCACCTCGACACTCTACC+CGG | 0.521428 | 1_4:-22390104 | None:intergenic |
TCACTGAAATCTCTTGGAGC+TGG | 0.521850 | 1_4:+22390158 | Msa0156370:CDS |
ACACATATCTCAACCGAGAC+AGG | 0.523377 | 1_4:-22389681 | None:intergenic |
CTCAAGCTATATTCAAGATG+TGG | 0.523430 | 1_4:+22392166 | Msa0156370:CDS |
TTAAGGCTTGGAGGCTAGGT+AGG | 0.523693 | 1_4:+22391584 | Msa0156370:CDS |
CGGTATCAGTCCGCTTGCTA+AGG | 0.524783 | 1_4:-22392428 | None:intergenic |
TAGTCTGGTGGTATTGACTT+GGG | 0.524945 | 1_4:-22389857 | None:intergenic |
ACTTAAAGTTAGGTGTATGA+AGG | 0.525012 | 1_4:+22389904 | Msa0156370:five_prime_UTR |
CTTGCAGCAGCAGCTAATGC+AGG | 0.525751 | 1_4:-22390023 | None:intergenic |
GGATATCCATTAGTTGATGC+AGG | 0.527111 | 1_4:+22391610 | Msa0156370:CDS |
ATTTCTGTGCAAAGCTACAA+TGG | 0.528775 | 1_4:+22390861 | Msa0156370:CDS |
GACCATAGTTTGGTTTAGGA+GGG | 0.533212 | 1_4:+22389980 | Msa0156370:CDS |
TATTTCATTCCCCATTTCCA+AGG | 0.533939 | 1_4:-22391718 | None:intergenic |
ACCGTCGAGAGGCCATTGCT+AGG | 0.534149 | 1_4:+22391520 | Msa0156370:CDS |
TAGGAGGGACCTAAGAATTG+AGG | 0.537254 | 1_4:+22389995 | Msa0156370:CDS |
TTAGTCTGGTGGTATTGACT+TGG | 0.537725 | 1_4:-22389858 | None:intergenic |
GGTGTATGAAGGTGAAGTGA+AGG | 0.542761 | 1_4:+22389915 | Msa0156370:five_prime_UTR |
ATTTGGTGTCCTAAAGAGGA+AGG | 0.543297 | 1_4:+22390071 | Msa0156370:CDS |
CCGTCGAGAGGCCATTGCTA+GGG | 0.543369 | 1_4:+22391521 | Msa0156370:CDS |
AATGGCCTCTCGACGGTGAA+CGG | 0.543863 | 1_4:-22391514 | None:intergenic |
CTAGAGCATGGTCTCCAGGT+TGG | 0.544636 | 1_4:+22391221 | Msa0156370:CDS |
CTGAGTGGATCCATCATCCA+TGG | 0.545436 | 1_4:+22392046 | Msa0156370:CDS |
TTCTCCCTACTAATTTGGAT+CGG | 0.546875 | 1_4:-22389796 | None:intergenic |
TGATCACGAACAAGTGAGAC+TGG | 0.549488 | 1_4:-22390807 | None:intergenic |
GAGAGCTTTGGGCGACCGGA+TGG | 0.551139 | 1_4:+22391638 | Msa0156370:CDS |
CAACTTTATATTAGTAGATG+AGG | 0.554125 | 1_4:-22392555 | None:intergenic |
TTATATTAGTAGATGAGGAT+AGG | 0.556442 | 1_4:-22392550 | None:intergenic |
GGATGATGGATCCACTCAGT+TGG | 0.557800 | 1_4:-22392042 | None:intergenic |
ATTGTTGAGTGAGACATGTA+CGG | 0.560043 | 1_4:+22389409 | Msa0156370:five_prime_UTR |
TCTGGAGGTAATCCGGTTCG+AGG | 0.560355 | 1_4:+22389634 | Msa0156370:five_prime_UTR |
ATTCAAGATGTGGGAAGATG+AGG | 0.561877 | 1_4:+22392176 | Msa0156370:CDS |
ACAGTAGGTGGTGCATTCCA+TGG | 0.562035 | 1_4:-22392063 | None:intergenic |
TTGCTTATACCTTGGAAATG+GGG | 0.565679 | 1_4:+22391709 | Msa0156370:CDS |
AATTTCAAGTTCCCTAGCAA+TGG | 0.567410 | 1_4:-22391532 | None:intergenic |
TTGATCAATGCATGACACTC+CGG | 0.568405 | 1_4:-22392448 | None:intergenic |
GTGGTGCATTCCATGGATGA+TGG | 0.569550 | 1_4:-22392056 | None:intergenic |
CTACTAATATAAAGTTGTCA+TGG | 0.571307 | 1_4:+22392561 | Msa0156370:three_prime_UTR |
CCTGATGCTCTTAGCACAGT+AGG | 0.576112 | 1_4:-22392078 | None:intergenic |
TTAGGACACCAAATAAAGAC+AGG | 0.576690 | 1_4:-22390062 | None:intergenic |
ACTAAATATGACACCTGTCT+CGG | 0.576823 | 1_4:+22389668 | Msa0156370:five_prime_UTR |
TGGGTTGGCAGTATATCTCC+GGG | 0.580136 | 1_4:+22391785 | Msa0156370:CDS |
TCAAGCTATATTCAAGATGT+GGG | 0.585612 | 1_4:+22392167 | Msa0156370:CDS |
TTGAAAGTGATATCTTGGGT+TGG | 0.587182 | 1_4:+22391770 | Msa0156370:CDS |
TGGTCATGAGCTTGAGCGGT+TGG | 0.592178 | 1_4:+22391819 | Msa0156370:CDS |
TGTGAGGAAAGTATTTCAGT+TGG | 0.593409 | 1_4:+22391372 | Msa0156370:CDS |
ATGACCATCAGGTAAGCTCC+CGG | 0.593729 | 1_4:-22391803 | None:intergenic |
TGGCATATATATGACGAAAG+TGG | 0.593822 | 1_4:+22390903 | Msa0156370:CDS |
AACCGGATTACCTCCAGAGG+AGG | 0.595390 | 1_4:-22389629 | None:intergenic |
ATGGATACACAACAAAATGC+GGG | 0.597128 | 1_4:+22391657 | Msa0156370:CDS |
TGAGAGTGTGCTACTCCTCA+AGG | 0.599451 | 1_4:-22389831 | None:intergenic |
CCCTAGCAATGGCCTCTCGA+CGG | 0.600478 | 1_4:-22391521 | None:intergenic |
ATTTGAGTAACCTTAGCAAG+CGG | 0.600742 | 1_4:+22392418 | Msa0156370:CDS |
TTAAAAGTAGAAATTTGAGG+AGG | 0.603657 | 1_4:+22389745 | Msa0156370:five_prime_UTR |
TTAGCCGATCCAAATTAGTA+GGG | 0.603677 | 1_4:+22389792 | Msa0156370:five_prime_UTR |
CCTCCAGAGGAGGGAACAAG+TGG | 0.604333 | 1_4:-22389619 | None:intergenic |
ATTGAAGGATCAGTATTCCA+AGG | 0.605723 | 1_4:-22391559 | None:intergenic |
GAATCGAACCAGAGACCTTG+AGG | 0.609345 | 1_4:+22389816 | Msa0156370:five_prime_UTR |
AAACATTCAATTGAGCAACT+AGG | 0.612068 | 1_4:+22391157 | Msa0156370:CDS |
TGAGTGAGACATGTACGGAA+AGG | 0.612106 | 1_4:+22389414 | Msa0156370:five_prime_UTR |
CTTTCGTCATATATATGCCA+CGG | 0.614882 | 1_4:-22390900 | None:intergenic |
ATGCATTATTAGCTAGAGCA+TGG | 0.623271 | 1_4:+22391209 | Msa0156370:CDS |
TACCACCAGACTAAGTCAAG+TGG | 0.626604 | 1_4:+22389867 | Msa0156370:five_prime_UTR |
TGAGTACTCTCGAAATCCAA+TGG | 0.628966 | 1_4:-22391470 | None:intergenic |
GATGGATACACAACAAAATG+CGG | 0.629254 | 1_4:+22391656 | Msa0156370:CDS |
GGGACAAAATACGATTCAGA+AGG | 0.630951 | 1_4:+22391979 | Msa0156370:CDS |
CTGATGGTCATGAGCTTGAG+CGG | 0.637347 | 1_4:+22391815 | Msa0156370:CDS |
TTTATCCGGGTAGAGTGTCG+AGG | 0.638088 | 1_4:+22390099 | Msa0156370:CDS |
ACCGGATTACCTCCAGAGGA+GGG | 0.642867 | 1_4:-22389628 | None:intergenic |
GCTAGAATTAATTGACAAGG+AGG | 0.644384 | 1_4:-22390999 | None:intergenic |
TGAGCGGTTGGACGATCCAG+AGG | 0.648762 | 1_4:+22391831 | Msa0156370:CDS |
TGGCGAGAATTCCAACTGAG+TGG | 0.655146 | 1_4:+22392031 | Msa0156370:CDS |
ATCTCCGGGAGCTTACCTGA+TGG | 0.656477 | 1_4:+22391799 | Msa0156370:CDS |
ACCACCAGACTAAGTCAAGT+GGG | 0.656604 | 1_4:+22389868 | Msa0156370:five_prime_UTR |
AGGTTGGAGCAAAAGTGACA+AGG | 0.665168 | 1_4:+22391237 | Msa0156370:CDS |
GACGAAGAAGTAGCGCCGCG+TGG | 0.670480 | 1_4:-22392294 | None:intergenic |
AATATACGGAGATAGGAGTG+AGG | 0.680107 | 1_4:-22391332 | None:intergenic |
TCGAACCGGATTACCTCCAG+AGG | 0.682043 | 1_4:-22389632 | None:intergenic |
TGTCAATTAATTCTAGCACA+AGG | 0.682737 | 1_4:+22391005 | Msa0156370:CDS |
TGTGCTAGAATTAATTGACA+AGG | 0.684750 | 1_4:-22391002 | None:intergenic |
GATGCTCTTAGCACAGTAGG+TGG | 0.688179 | 1_4:-22392075 | None:intergenic |
ATCCGGGTAGAGTGTCGAGG+TGG | 0.688806 | 1_4:+22390102 | Msa0156370:CDS |
TAAGATGCAGCAAAACACAA+AGG | 0.691176 | 1_4:-22389549 | None:intergenic |
ACCCACTTGACTTAGTCTGG+TGG | 0.701456 | 1_4:-22389869 | None:intergenic |
TTGAAGGACAAGGCTCCACG+CGG | 0.705632 | 1_4:+22392279 | Msa0156370:CDS |
GGGACTTGTTACATGAACCG+TGG | 0.709661 | 1_4:+22390883 | Msa0156370:CDS |
TTCTGTGCAAAGCTACAATG+GGG | 0.718476 | 1_4:+22390863 | Msa0156370:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTGTTTGTTATAAAA+TGG | + | chr1_4:22389359-22389378 | Msa0156370:five_prime_UTR | 10.0% |
!! | CTAAAAACAAAAATATATGT+AGG | - | chr1_4:22389595-22389614 | None:intergenic | 15.0% |
!! | ACAAACAAAAAAAAAGACTA+AGG | - | chr1_4:22389352-22389371 | None:intergenic | 20.0% |
!!! | ATACTTTTTACAAAACAAAG+TGG | + | chr1_4:22389462-22389481 | Msa0156370:five_prime_UTR | 20.0% |
!! | TAGTTAAAAGTAGAAATTTG+AGG | + | chr1_4:22389742-22389761 | Msa0156370:five_prime_UTR | 20.0% |
!!! | AAACTTGTTTACAATTGATA+TGG | + | chr1_4:22390400-22390419 | Msa0156370:intron | 20.0% |
!!! | ATGATTTGTTACATCTTTTT+CGG | - | chr1_4:22390493-22390512 | None:intergenic | 20.0% |
!! | ACAAAAAGTAGATTAAATCT+TGG | + | chr1_4:22391298-22391317 | Msa0156370:CDS | 20.0% |
!! | AATTCTCCAAAATGAATATA+CGG | - | chr1_4:22391349-22391368 | None:intergenic | 20.0% |
! | TTGAAATTCAGAATTGAAGT+TGG | + | chr1_4:22389177-22389196 | Msa0156370:five_prime_UTR | 25.0% |
! | TTAAAAGTAGAAATTTGAGG+AGG | + | chr1_4:22389745-22389764 | Msa0156370:five_prime_UTR | 25.0% |
! | TGGAATGAAAAATCAGAAAA+TGG | + | chr1_4:22389947-22389966 | Msa0156370:exon | 25.0% |
! | GGAATGAAAAATCAGAAAAT+GGG | + | chr1_4:22389948-22389967 | Msa0156370:exon | 25.0% |
! | GTTGTGTTTAATCATCTTTA+TGG | + | chr1_4:22390254-22390273 | Msa0156370:CDS | 25.0% |
!! | AAAGAAATCCATCTTTTCAA+TGG | - | chr1_4:22390289-22390308 | None:intergenic | 25.0% |
! | AGATATCATACAAGTATTTG+TGG | + | chr1_4:22390557-22390576 | Msa0156370:intron | 25.0% |
! | CAACATCAAAGAAAAATTAG+TGG | + | chr1_4:22390830-22390849 | Msa0156370:CDS | 25.0% |
! | AAAGAAAAATTAGTGGAACT+TGG | + | chr1_4:22390837-22390856 | Msa0156370:CDS | 25.0% |
!!! | GTTTGTTTCTTTTGTTGTTT+TGG | + | chr1_4:22391117-22391136 | Msa0156370:intron | 25.0% |
!!! | TACTTTTTGTGTAGTGAATT+AGG | - | chr1_4:22391288-22391307 | None:intergenic | 25.0% |
!! | TAAAAATGTTGCTTATACCT+TGG | + | chr1_4:22391701-22391720 | Msa0156370:CDS | 25.0% |
!! | AATGGGGAATGAAATATTTT+TGG | + | chr1_4:22391725-22391744 | Msa0156370:CDS | 25.0% |
!! | ATGGGGAATGAAATATTTTT+GGG | + | chr1_4:22391726-22391745 | Msa0156370:CDS | 25.0% |
!!! | AACTTCATGTTTATTTTCTG+AGG | - | chr1_4:22392220-22392239 | None:intergenic | 25.0% |
!!! | CATTTTTGTTTCTTCGTATT+AGG | - | chr1_4:22392369-22392388 | None:intergenic | 25.0% |
!! | ACAAAAATGTATCGATAAAG+AGG | + | chr1_4:22392380-22392399 | Msa0156370:CDS | 25.0% |
! | TTATATTAGTAGATGAGGAT+AGG | - | chr1_4:22392553-22392572 | None:intergenic | 25.0% |
! | CAACTTTATATTAGTAGATG+AGG | - | chr1_4:22392558-22392577 | None:intergenic | 25.0% |
! | CTACTAATATAAAGTTGTCA+TGG | + | chr1_4:22392561-22392580 | Msa0156370:three_prime_UTR | 25.0% |
GATAGTGAACAATGAAACTA+TGG | - | chr1_4:22389067-22389086 | None:intergenic | 30.0% | |
! | GTATGTGCTAGATATTTTCA+TGG | - | chr1_4:22389129-22389148 | None:intergenic | 30.0% |
AAAACAAAGTGGCATAATCT+TGG | + | chr1_4:22389473-22389492 | Msa0156370:five_prime_UTR | 30.0% | |
TGGAGATTGTACTTAAAGTT+AGG | + | chr1_4:22389894-22389913 | Msa0156370:five_prime_UTR | 30.0% | |
ACTTAAAGTTAGGTGTATGA+AGG | + | chr1_4:22389904-22389923 | Msa0156370:five_prime_UTR | 30.0% | |
ATCAGAAAATGGGTATGAAT+AGG | + | chr1_4:22389958-22389977 | Msa0156370:CDS | 30.0% | |
!! | CTGTTTTTCCTGTCTTTATT+TGG | + | chr1_4:22390054-22390073 | Msa0156370:CDS | 30.0% |
!! | TAGTACTCTTAAAGCACTTT+TGG | + | chr1_4:22390202-22390221 | Msa0156370:CDS | 30.0% |
AAGTGATTCCATTGAAAAGA+TGG | + | chr1_4:22390278-22390297 | Msa0156370:intron | 30.0% | |
TACCTCGAGAGTTAATAAAT+CGG | + | chr1_4:22390367-22390386 | Msa0156370:intron | 30.0% | |
AACAAATCATCTAGTGTAGT+TGG | + | chr1_4:22390503-22390522 | Msa0156370:intron | 30.0% | |
GAATGAGTGTGATAAATTCA+TGG | - | chr1_4:22390620-22390639 | None:intergenic | 30.0% | |
TGAATTTATCACACTCATTC+CGG | + | chr1_4:22390620-22390639 | Msa0156370:intron | 30.0% | |
CAGATAACCAAATAGAAAGA+CGG | - | chr1_4:22390661-22390680 | None:intergenic | 30.0% | |
CTATTTGGTTATCTGATATG+CGG | + | chr1_4:22390666-22390685 | Msa0156370:intron | 30.0% | |
! | TTACAACCTTTGATCCTTTT+TGG | + | chr1_4:22390934-22390953 | Msa0156370:CDS | 30.0% |
TCTATTCCAAAAAGGATCAA+AGG | - | chr1_4:22390943-22390962 | None:intergenic | 30.0% | |
ATTAATTGACAAGGAGGAAT+AGG | - | chr1_4:22390996-22391015 | None:intergenic | 30.0% | |
TGTGCTAGAATTAATTGACA+AGG | - | chr1_4:22391005-22391024 | None:intergenic | 30.0% | |
TGTCAATTAATTCTAGCACA+AGG | + | chr1_4:22391005-22391024 | Msa0156370:CDS | 30.0% | |
AAACATTCAATTGAGCAACT+AGG | + | chr1_4:22391157-22391176 | Msa0156370:CDS | 30.0% | |
!! | TAGGTTGTTTTCGACAAATT+CGG | - | chr1_4:22391269-22391288 | None:intergenic | 30.0% |
CAAAATGAATATACGGAGAT+AGG | - | chr1_4:22391342-22391361 | None:intergenic | 30.0% | |
! | CTATCTCCGTATATTCATTT+TGG | + | chr1_4:22391340-22391359 | Msa0156370:CDS | 30.0% |
! | CAGATTTTATGGAAAAACGA+AGG | + | chr1_4:22391406-22391425 | Msa0156370:CDS | 30.0% |
!!! | GGAACTTGAAATTTTTTCCT+TGG | + | chr1_4:22391542-22391561 | Msa0156370:CDS | 30.0% |
TACTGATCCTTCAATGTTTA+AGG | + | chr1_4:22391567-22391586 | Msa0156370:CDS | 30.0% | |
TGATCTTGAAAGTGATATCT+TGG | + | chr1_4:22391765-22391784 | Msa0156370:CDS | 30.0% | |
GATCTTGAAAGTGATATCTT+GGG | + | chr1_4:22391766-22391785 | Msa0156370:CDS | 30.0% | |
! | TTGTGTTTTCTTGTATTGCA+CGG | + | chr1_4:22391858-22391877 | Msa0156370:intron | 30.0% |
! | AACTTTTGTGAACAGATTCA+AGG | + | chr1_4:22391958-22391977 | Msa0156370:intron | 30.0% |
! | ACTTTTGTGAACAGATTCAA+GGG | + | chr1_4:22391959-22391978 | Msa0156370:intron | 30.0% |
TCAAGCTATATTCAAGATGT+GGG | + | chr1_4:22392167-22392186 | Msa0156370:CDS | 30.0% | |
!! | TTCATGTTTATTTTCTGAGG+TGG | - | chr1_4:22392217-22392236 | None:intergenic | 30.0% |
! | GATTCCAAAAGTTTTCTTGA+AGG | + | chr1_4:22392263-22392282 | Msa0156370:CDS | 30.0% |
! | TTGTCCTTCAAGAAAACTTT+TGG | - | chr1_4:22392270-22392289 | None:intergenic | 30.0% |
! | AAAAGTTTTCTTGAAGGACA+AGG | + | chr1_4:22392269-22392288 | Msa0156370:CDS | 30.0% |
TTCTTCGTCAAATGATCAAA+GGG | + | chr1_4:22392308-22392327 | Msa0156370:CDS | 30.0% | |
!! | TTTTGTTTCTTCGTATTAGG+AGG | - | chr1_4:22392366-22392385 | None:intergenic | 30.0% |
!! | GTTCTAGCTTTAGTTGTTTG+TGG | + | chr1_4:22389281-22389300 | Msa0156370:five_prime_UTR | 35.0% |
ATTGTTGAGTGAGACATGTA+CGG | + | chr1_4:22389409-22389428 | Msa0156370:five_prime_UTR | 35.0% | |
TAAGATGCAGCAAAACACAA+AGG | - | chr1_4:22389552-22389571 | None:intergenic | 35.0% | |
ACTAAATATGACACCTGTCT+CGG | + | chr1_4:22389668-22389687 | Msa0156370:five_prime_UTR | 35.0% | |
ATTAGCCGATCCAAATTAGT+AGG | + | chr1_4:22389791-22389810 | Msa0156370:five_prime_UTR | 35.0% | |
TTAGCCGATCCAAATTAGTA+GGG | + | chr1_4:22389792-22389811 | Msa0156370:five_prime_UTR | 35.0% | |
TTCTCCCTACTAATTTGGAT+CGG | - | chr1_4:22389799-22389818 | None:intergenic | 35.0% | |
TTCGATTCTCCCTACTAATT+TGG | - | chr1_4:22389804-22389823 | None:intergenic | 35.0% | |
GTATGAATAGGACCATAGTT+TGG | + | chr1_4:22389970-22389989 | Msa0156370:CDS | 35.0% | |
! | ATAGGACCATAGTTTGGTTT+AGG | + | chr1_4:22389976-22389995 | Msa0156370:CDS | 35.0% |
TTAGGACACCAAATAAAGAC+AGG | - | chr1_4:22390065-22390084 | None:intergenic | 35.0% | |
!! | CTTTATTTGGTGTCCTAAAG+AGG | + | chr1_4:22390067-22390086 | Msa0156370:CDS | 35.0% |
TAAAACTGTCCTTCCTCTTT+AGG | - | chr1_4:22390083-22390102 | None:intergenic | 35.0% | |
TTATTAACTCTCGAGGTAAC+AGG | - | chr1_4:22390365-22390384 | None:intergenic | 35.0% | |
!! | TACCGATTTATTAACTCTCG+AGG | - | chr1_4:22390372-22390391 | None:intergenic | 35.0% |
! | ACATAAACTGATTCTCACTC+TGG | - | chr1_4:22390444-22390463 | None:intergenic | 35.0% |
TGTTTCACCGTCTTTCTATT+TGG | + | chr1_4:22390651-22390670 | Msa0156370:intron | 35.0% | |
GATATGAAACAGATCAGTGA+AGG | - | chr1_4:22390742-22390761 | None:intergenic | 35.0% | |
TAAAAGAAGTGGAGATCATC+AGG | - | chr1_4:22390781-22390800 | None:intergenic | 35.0% | |
ACTGGATCTGTTAAAAGAAG+TGG | - | chr1_4:22390792-22390811 | None:intergenic | 35.0% | |
ATTTCTGTGCAAAGCTACAA+TGG | + | chr1_4:22390861-22390880 | Msa0156370:CDS | 35.0% | |
TTTCTGTGCAAAGCTACAAT+GGG | + | chr1_4:22390862-22390881 | Msa0156370:CDS | 35.0% | |
CTTTCGTCATATATATGCCA+CGG | - | chr1_4:22390903-22390922 | None:intergenic | 35.0% | |
TGGCATATATATGACGAAAG+TGG | + | chr1_4:22390903-22390922 | Msa0156370:CDS | 35.0% | |
TGCAAGCATCTATTCCAAAA+AGG | - | chr1_4:22390951-22390970 | None:intergenic | 35.0% | |
GCTAGAATTAATTGACAAGG+AGG | - | chr1_4:22391002-22391021 | None:intergenic | 35.0% | |
ACTCACTTGAATTTGTAGAC+AGG | - | chr1_4:22391097-22391116 | None:intergenic | 35.0% | |
!!! | TCTTTTGTTGTTTTGGTGAC+AGG | + | chr1_4:22391124-22391143 | Msa0156370:intron | 35.0% |
ATGCATTATTAGCTAGAGCA+TGG | + | chr1_4:22391209-22391228 | Msa0156370:CDS | 35.0% | |
!! | ATTTTGGAGAATTGAGTGTG+AGG | + | chr1_4:22391356-22391375 | Msa0156370:CDS | 35.0% |
!! | TGTGAGGAAAGTATTTCAGT+TGG | + | chr1_4:22391372-22391391 | Msa0156370:CDS | 35.0% |
! | CACGAACGAAACAGATTTTA+TGG | + | chr1_4:22391395-22391414 | Msa0156370:CDS | 35.0% |
AAAAACGAAGGAAACATCGT+CGG | + | chr1_4:22391418-22391437 | Msa0156370:CDS | 35.0% | |
!!! | ACGTTTTTTCTCAAAGCCAT+TGG | + | chr1_4:22391454-22391473 | Msa0156370:CDS | 35.0% |
!! | AATTTCAAGTTCCCTAGCAA+TGG | - | chr1_4:22391535-22391554 | None:intergenic | 35.0% |
ATTGAAGGATCAGTATTCCA+AGG | - | chr1_4:22391562-22391581 | None:intergenic | 35.0% | |
! | ATCCTTCAATGTTTAAGGCT+TGG | + | chr1_4:22391572-22391591 | Msa0156370:CDS | 35.0% |
!! | CATTTTGTTGTGTATCCATC+CGG | - | chr1_4:22391656-22391675 | None:intergenic | 35.0% |
GATGGATACACAACAAAATG+CGG | + | chr1_4:22391656-22391675 | Msa0156370:CDS | 35.0% | |
ATGGATACACAACAAAATGC+GGG | + | chr1_4:22391657-22391676 | Msa0156370:CDS | 35.0% | |
! | TGTTGCTTATACCTTGGAAA+TGG | + | chr1_4:22391707-22391726 | Msa0156370:CDS | 35.0% |
GTTGCTTATACCTTGGAAAT+GGG | + | chr1_4:22391708-22391727 | Msa0156370:CDS | 35.0% | |
TTGCTTATACCTTGGAAATG+GGG | + | chr1_4:22391709-22391728 | Msa0156370:CDS | 35.0% | |
TATTTCATTCCCCATTTCCA+AGG | - | chr1_4:22391721-22391740 | None:intergenic | 35.0% | |
TTGAAAGTGATATCTTGGGT+TGG | + | chr1_4:22391770-22391789 | Msa0156370:CDS | 35.0% | |
AAGAAAACACAACTTACCTC+TGG | - | chr1_4:22391850-22391869 | None:intergenic | 35.0% | |
!!! | TCTATGTCGATGATTGGTTT+TGG | - | chr1_4:22392126-22392145 | None:intergenic | 35.0% |
ACCAATCATCGACATAGATT+TGG | + | chr1_4:22392128-22392147 | Msa0156370:CDS | 35.0% | |
CTCAAGCTATATTCAAGATG+TGG | + | chr1_4:22392166-22392185 | Msa0156370:CDS | 35.0% | |
CTTCTTCGTCAAATGATCAA+AGG | + | chr1_4:22392307-22392326 | Msa0156370:CDS | 35.0% | |
!! | CTCTTTGGATTCTGAAGTAT+TGG | - | chr1_4:22392336-22392355 | None:intergenic | 35.0% |
ATTTGAGTAACCTTAGCAAG+CGG | + | chr1_4:22392418-22392437 | Msa0156370:CDS | 35.0% | |
TGAGGATAGGAACATTGTTA+TGG | - | chr1_4:22392540-22392559 | None:intergenic | 35.0% | |
TGTAGGAGATATCTGATCAC+TGG | - | chr1_4:22389578-22389597 | None:intergenic | 40.0% | |
!! | TAGTCTGGTGGTATTGACTT+GGG | - | chr1_4:22389860-22389879 | None:intergenic | 40.0% |
!! | TTAGTCTGGTGGTATTGACT+TGG | - | chr1_4:22389861-22389880 | None:intergenic | 40.0% |
! | TGAAGGTGAAGTGAAGGTTT+TGG | + | chr1_4:22389921-22389940 | Msa0156370:five_prime_UTR | 40.0% |
!!! | TGAAGTGAAGGTTTTGGTTG+TGG | + | chr1_4:22389927-22389946 | Msa0156370:five_prime_UTR | 40.0% |
! | GACCATAGTTTGGTTTAGGA+GGG | + | chr1_4:22389980-22389999 | Msa0156370:CDS | 40.0% |
CAGGATTGTCCTCAATTCTT+AGG | - | chr1_4:22390007-22390026 | None:intergenic | 40.0% | |
!! | ATTTGGTGTCCTAAAGAGGA+AGG | + | chr1_4:22390071-22390090 | Msa0156370:CDS | 40.0% |
!! | AGAGGAAGGACAGTTTTATC+CGG | + | chr1_4:22390085-22390104 | Msa0156370:CDS | 40.0% |
GAAGCAGTCTCTTTCTCATT+TGG | + | chr1_4:22390130-22390149 | Msa0156370:CDS | 40.0% | |
GATCAGTCACTGAAATCTCT+TGG | + | chr1_4:22390152-22390171 | Msa0156370:CDS | 40.0% | |
TTCTGTGCAAAGCTACAATG+GGG | + | chr1_4:22390863-22390882 | Msa0156370:CDS | 40.0% | |
AATATACGGAGATAGGAGTG+AGG | - | chr1_4:22391335-22391354 | None:intergenic | 40.0% | |
TGAGTACTCTCGAAATCCAA+TGG | - | chr1_4:22391473-22391492 | None:intergenic | 40.0% | |
CTCCAAGCCTTAAACATTGA+AGG | - | chr1_4:22391577-22391596 | None:intergenic | 40.0% | |
! | CTTCAATGTTTAAGGCTTGG+AGG | + | chr1_4:22391575-22391594 | Msa0156370:CDS | 40.0% |
! | GGATATCCATTAGTTGATGC+AGG | + | chr1_4:22391610-22391629 | Msa0156370:CDS | 40.0% |
CTCATTCCTGCATCAACTAA+TGG | - | chr1_4:22391619-22391638 | None:intergenic | 40.0% | |
GGGACAAAATACGATTCAGA+AGG | + | chr1_4:22391979-22391998 | Msa0156370:CDS | 40.0% | |
GCCAAATCTATGTCGATGAT+TGG | - | chr1_4:22392132-22392151 | None:intergenic | 40.0% | |
ATTCAAGATGTGGGAAGATG+AGG | + | chr1_4:22392176-22392195 | Msa0156370:CDS | 40.0% | |
TTAGGAGGATCATCACTCTT+TGG | - | chr1_4:22392351-22392370 | None:intergenic | 40.0% | |
TTGATCAATGCATGACACTC+CGG | - | chr1_4:22392451-22392470 | None:intergenic | 40.0% | |
TGAGTGAGACATGTACGGAA+AGG | + | chr1_4:22389414-22389433 | Msa0156370:five_prime_UTR | 45.0% | |
ACACATATCTCAACCGAGAC+AGG | - | chr1_4:22389684-22389703 | None:intergenic | 45.0% | |
TACCACCAGACTAAGTCAAG+TGG | + | chr1_4:22389867-22389886 | Msa0156370:five_prime_UTR | 45.0% | |
ACCACCAGACTAAGTCAAGT+GGG | + | chr1_4:22389868-22389887 | Msa0156370:five_prime_UTR | 45.0% | |
ACAACCCACTTGACTTAGTC+TGG | - | chr1_4:22389875-22389894 | None:intergenic | 45.0% | |
!! | AGACTAAGTCAAGTGGGTTG+TGG | + | chr1_4:22389874-22389893 | Msa0156370:five_prime_UTR | 45.0% |
GGTGTATGAAGGTGAAGTGA+AGG | + | chr1_4:22389915-22389934 | Msa0156370:five_prime_UTR | 45.0% | |
! | GGACCATAGTTTGGTTTAGG+AGG | + | chr1_4:22389979-22389998 | Msa0156370:CDS | 45.0% |
GTCCCTCCTAAACCAAACTA+TGG | - | chr1_4:22389985-22390004 | None:intergenic | 45.0% | |
TAGGAGGGACCTAAGAATTG+AGG | + | chr1_4:22389995-22390014 | Msa0156370:CDS | 45.0% | |
!! | GAGGAAGGACAGTTTTATCC+GGG | + | chr1_4:22390086-22390105 | Msa0156370:CDS | 45.0% |
TCACTGAAATCTCTTGGAGC+TGG | + | chr1_4:22390158-22390177 | Msa0156370:CDS | 45.0% | |
ACGGTGAAACATTCAGACAC+CGG | - | chr1_4:22390642-22390661 | None:intergenic | 45.0% | |
TGATCACGAACAAGTGAGAC+TGG | - | chr1_4:22390810-22390829 | None:intergenic | 45.0% | |
!!! | TTGTCACTTTTGCTCCAACC+TGG | - | chr1_4:22391238-22391257 | None:intergenic | 45.0% |
AGGTTGGAGCAAAAGTGACA+AGG | + | chr1_4:22391237-22391256 | Msa0156370:CDS | 45.0% | |
! | ATGTTTAAGGCTTGGAGGCT+AGG | + | chr1_4:22391580-22391599 | Msa0156370:CDS | 45.0% |
ATGCAGGAATGAGAGAGCTT+TGG | + | chr1_4:22391626-22391645 | Msa0156370:CDS | 45.0% | |
TGCAGGAATGAGAGAGCTTT+GGG | + | chr1_4:22391627-22391646 | Msa0156370:CDS | 45.0% | |
!! | TTGGGTTGGCAGTATATCTC+CGG | + | chr1_4:22391784-22391803 | Msa0156370:CDS | 45.0% |
AAGGCGAATACGTTCGTCAA+TGG | + | chr1_4:22391998-22392017 | Msa0156370:CDS | 45.0% | |
TCGTCAATGGCTACCTGAAT+TGG | + | chr1_4:22392011-22392030 | Msa0156370:CDS | 45.0% | |
GTTGGAATTCTCGCCAATTC+AGG | - | chr1_4:22392027-22392046 | None:intergenic | 45.0% | |
! | AGAGCATCAGGTGTAGAGTT+AGG | + | chr1_4:22392090-22392109 | Msa0156370:CDS | 45.0% |
CGATAAAGAGGATCGAGAAC+AGG | + | chr1_4:22392392-22392411 | Msa0156370:CDS | 45.0% | |
ACTGCTTGAACTCTGTCTCT+TGG | - | chr1_4:22392502-22392521 | None:intergenic | 45.0% | |
GAATCGAACCAGAGACCTTG+AGG | + | chr1_4:22389816-22389835 | Msa0156370:five_prime_UTR | 50.0% | |
! | TGAGAGTGTGCTACTCCTCA+AGG | - | chr1_4:22389834-22389853 | None:intergenic | 50.0% |
TTGAGGAGTAGCACACTCTC+AGG | + | chr1_4:22389833-22389852 | Msa0156370:five_prime_UTR | 50.0% | |
ACCCACTTGACTTAGTCTGG+TGG | - | chr1_4:22389872-22389891 | None:intergenic | 50.0% | |
TGCATTAGCTGCTGCTGCAA+GGG | + | chr1_4:22390025-22390044 | Msa0156370:CDS | 50.0% | |
!! | TTTATCCGGGTAGAGTGTCG+AGG | + | chr1_4:22390099-22390118 | Msa0156370:CDS | 50.0% |
!! | GGGACTTGTTACATGAACCG+TGG | + | chr1_4:22390883-22390902 | Msa0156370:CDS | 50.0% |
TTAGCTAGAGCATGGTCTCC+AGG | + | chr1_4:22391217-22391236 | Msa0156370:CDS | 50.0% | |
TTAAGGCTTGGAGGCTAGGT+AGG | + | chr1_4:22391584-22391603 | Msa0156370:CDS | 50.0% | |
!! | TGGGTTGGCAGTATATCTCC+GGG | + | chr1_4:22391785-22391804 | Msa0156370:CDS | 50.0% |
ATGACCATCAGGTAAGCTCC+CGG | - | chr1_4:22391806-22391825 | None:intergenic | 50.0% | |
CTGATGGTCATGAGCTTGAG+CGG | + | chr1_4:22391815-22391834 | Msa0156370:CDS | 50.0% | |
TGGCGAGAATTCCAACTGAG+TGG | + | chr1_4:22392031-22392050 | Msa0156370:CDS | 50.0% | |
!! | GGATGATGGATCCACTCAGT+TGG | - | chr1_4:22392045-22392064 | None:intergenic | 50.0% |
CTGAGTGGATCCATCATCCA+TGG | + | chr1_4:22392046-22392065 | Msa0156370:CDS | 50.0% | |
GTGGTGCATTCCATGGATGA+TGG | - | chr1_4:22392059-22392078 | None:intergenic | 50.0% | |
ACAGTAGGTGGTGCATTCCA+TGG | - | chr1_4:22392066-22392085 | None:intergenic | 50.0% | |
GATGCTCTTAGCACAGTAGG+TGG | - | chr1_4:22392078-22392097 | None:intergenic | 50.0% | |
CCTGATGCTCTTAGCACAGT+AGG | - | chr1_4:22392081-22392100 | None:intergenic | 50.0% | |
!! | CCTACTGTGCTAAGAGCATC+AGG | + | chr1_4:22392078-22392097 | Msa0156370:CDS | 50.0% |
!! | CTTAGCAAGCGGACTGATAC+CGG | + | chr1_4:22392429-22392448 | Msa0156370:CDS | 50.0% |
! | TTGCCACTTGTTCCCTCCTC+TGG | + | chr1_4:22389616-22389635 | Msa0156370:five_prime_UTR | 55.0% |
! | TCCCTCCTCTGGAGGTAATC+CGG | + | chr1_4:22389627-22389646 | Msa0156370:five_prime_UTR | 55.0% |
ACCGGATTACCTCCAGAGGA+GGG | - | chr1_4:22389631-22389650 | None:intergenic | 55.0% | |
AACCGGATTACCTCCAGAGG+AGG | - | chr1_4:22389632-22389651 | None:intergenic | 55.0% | |
TCGAACCGGATTACCTCCAG+AGG | - | chr1_4:22389635-22389654 | None:intergenic | 55.0% | |
! | TCTGGAGGTAATCCGGTTCG+AGG | + | chr1_4:22389634-22389653 | Msa0156370:five_prime_UTR | 55.0% |
TGTCTGACAGTGCCTCGAAC+CGG | - | chr1_4:22389649-22389668 | None:intergenic | 55.0% | |
! | GTGCTACTCCTCAAGGTCTC+TGG | - | chr1_4:22389827-22389846 | None:intergenic | 55.0% |
CTTGCAGCAGCAGCTAATGC+AGG | - | chr1_4:22390026-22390045 | None:intergenic | 55.0% | |
CTGCATTAGCTGCTGCTGCA+AGG | + | chr1_4:22390024-22390043 | Msa0156370:CDS | 55.0% | |
TTAGCTGCTGCTGCAAGGGA+TGG | + | chr1_4:22390029-22390048 | Msa0156370:CDS | 55.0% | |
CTAGAGCATGGTCTCCAGGT+TGG | + | chr1_4:22391221-22391240 | Msa0156370:CDS | 55.0% | |
! | GTTTTCCGTTCACCGTCGAG+AGG | + | chr1_4:22391509-22391528 | Msa0156370:CDS | 55.0% |
AATGGCCTCTCGACGGTGAA+CGG | - | chr1_4:22391517-22391536 | None:intergenic | 55.0% | |
!! | ATGAGAGAGCTTTGGGCGAC+CGG | + | chr1_4:22391634-22391653 | Msa0156370:CDS | 55.0% |
ATCTCCGGGAGCTTACCTGA+TGG | + | chr1_4:22391799-22391818 | Msa0156370:CDS | 55.0% | |
CGCTCAAGCTCATGACCATC+AGG | - | chr1_4:22391817-22391836 | None:intergenic | 55.0% | |
TGGTCATGAGCTTGAGCGGT+TGG | + | chr1_4:22391819-22391838 | Msa0156370:CDS | 55.0% | |
TTGAAGGACAAGGCTCCACG+CGG | + | chr1_4:22392279-22392298 | Msa0156370:CDS | 55.0% | |
! | CGGTATCAGTCCGCTTGCTA+AGG | - | chr1_4:22392431-22392450 | None:intergenic | 55.0% |
CCTCCAGAGGAGGGAACAAG+TGG | - | chr1_4:22389622-22389641 | None:intergenic | 60.0% | |
CCACTTGTTCCCTCCTCTGG+AGG | + | chr1_4:22389619-22389638 | Msa0156370:five_prime_UTR | 60.0% | |
!! | ATCCGGGTAGAGTGTCGAGG+TGG | + | chr1_4:22390102-22390121 | Msa0156370:CDS | 60.0% |
CACCACCTCGACACTCTACC+CGG | - | chr1_4:22390107-22390126 | None:intergenic | 60.0% | |
ACCGTCGAGAGGCCATTGCT+AGG | + | chr1_4:22391520-22391539 | Msa0156370:CDS | 60.0% | |
CCCTAGCAATGGCCTCTCGA+CGG | - | chr1_4:22391524-22391543 | None:intergenic | 60.0% | |
CCGTCGAGAGGCCATTGCTA+GGG | + | chr1_4:22391521-22391540 | Msa0156370:CDS | 60.0% | |
GCTTGGAGGCTAGGTAGGAC+TGG | + | chr1_4:22391589-22391608 | Msa0156370:CDS | 60.0% | |
TGAGCGGTTGGACGATCCAG+AGG | + | chr1_4:22391831-22391850 | Msa0156370:CDS | 60.0% | |
!! | CGGGTAGAGTGTCGAGGTGG+TGG | + | chr1_4:22390105-22390124 | Msa0156370:CDS | 65.0% |
!! | GAGAGCTTTGGGCGACCGGA+TGG | + | chr1_4:22391638-22391657 | Msa0156370:CDS | 65.0% |
GACGAAGAAGTAGCGCCGCG+TGG | - | chr1_4:22392297-22392316 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 22389059 | 22392664 | 22389059 | ID=Msa0156370;Name=Msa0156370 |
chr1_4 | mRNA | 22389059 | 22392664 | 22389059 | ID=Msa0156370-mRNA-1;Parent=Msa0156370;Name=Msa0156370-mRNA-1;_AED=0.04;_eAED=0.04;_QI=892|1|1|1|1|1|4|122|607 |
chr1_4 | exon | 22389059 | 22390275 | 22389059 | ID=Msa0156370-mRNA-1:exon:8014;Parent=Msa0156370-mRNA-1 |
chr1_4 | exon | 22390805 | 22391026 | 22390805 | ID=Msa0156370-mRNA-1:exon:8015;Parent=Msa0156370-mRNA-1 |
chr1_4 | exon | 22391146 | 22391852 | 22391146 | ID=Msa0156370-mRNA-1:exon:8016;Parent=Msa0156370-mRNA-1 |
chr1_4 | exon | 22391973 | 22392664 | 22391973 | ID=Msa0156370-mRNA-1:exon:8017;Parent=Msa0156370-mRNA-1 |
chr1_4 | five_prime_UTR | 22389059 | 22389950 | 22389059 | ID=Msa0156370-mRNA-1:five_prime_utr;Parent=Msa0156370-mRNA-1 |
chr1_4 | CDS | 22389951 | 22390275 | 22389951 | ID=Msa0156370-mRNA-1:cds;Parent=Msa0156370-mRNA-1 |
chr1_4 | CDS | 22390805 | 22391026 | 22390805 | ID=Msa0156370-mRNA-1:cds;Parent=Msa0156370-mRNA-1 |
chr1_4 | CDS | 22391146 | 22391852 | 22391146 | ID=Msa0156370-mRNA-1:cds;Parent=Msa0156370-mRNA-1 |
chr1_4 | CDS | 22391973 | 22392542 | 22391973 | ID=Msa0156370-mRNA-1:cds;Parent=Msa0156370-mRNA-1 |
chr1_4 | three_prime_UTR | 22392543 | 22392664 | 22392543 | ID=Msa0156370-mRNA-1:three_prime_utr;Parent=Msa0156370-mRNA-1 |
Gene Sequence |
Protein sequence |