AlfalfaGEDB | Msa0104730

M. sativa cultivar zhongmu-4 / Msa0104730

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0104730	XP_013466412.1	93.130	131	9	0	121	251	120	250	1.17e-71	229

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0104730	A0A072VGB0	93.130	131	9	0	121	251	120	250	5.57e-72	229

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0039640	Msa0104730	0.825316	5.009793e-54	-8.615850e-47
Msa0087280	Msa0104730	0.803393	3.562289e-49	-8.615850e-47
Msa0104730	Msa0133920	0.810307	1.230449e-50	-8.615850e-47
Msa0104730	Msa0154760	0.805860	1.088489e-49	-8.615850e-47
Msa0104730	Msa0228680	0.911436	6.096640e-83	-8.615850e-47
Msa0104730	Msa0620000	0.809866	1.531252e-50	-8.615850e-47
Msa0104730	Msa0623050	0.953603	1.904302e-111	-8.615850e-47
Msa0104730	Msa0799170	0.839679	1.371300e-57	-8.615850e-47
Msa0104730	Msa0837610	0.833997	3.865292e-56	-8.615850e-47
Msa0104730	Msa1040610	0.833314	5.726803e-56	-8.615850e-47
Msa0104730	Msa1127570	0.821040	4.987997e-53	-8.615850e-47
Msa0104730	Msa1127620	0.852244	5.242783e-61	-8.615850e-47
Msa0104730	Msa1257830	0.812064	5.114900e-51	-8.615850e-47
Msa0104730	Msa1329140	0.834255	3.331281e-56	-8.615850e-47
Msa0104730	Msa1329220	0.818075	2.367946e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0104730	MtrunA17_Chr1g0159311	93.130	131	9	0	121	251	120	250	1.07e-75	229
Msa0104730	MtrunA17_Chr1g0147361	58.696	92	36	2	123	213	6	96	1.23e-34	122
Msa0104730	MtrunA17_Chr1g0147381	61.628	86	30	2	134	217	21	105	4.10e-31	116
Msa0104730	MtrunA17_Chr1g0147381	47.917	96	39	3	156	251	216	300	2.93e-19	84.7
Msa0104730	MtrunA17_Chr1g0147381	56.452	62	26	1	156	217	159	219	5.41e-15	73.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0104730	AT1G43790.1	39.394	99	57	2	108	203	2	100	2.33e-15	70.5

Find 89 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTAGAAATTTGGTTGATTTA+AGG	0.184346	1_3:-12886725	None:intergenic
AACATTGTGCCTGGTCCTTT+TGG	0.220442	1_3:+12887237	Msa0104730:CDS
TGAGGTGGTGGAGGGTTAAA+AGG	0.248017	1_3:-12886844	None:intergenic
GAGGGTGGAAGTGGTGGTGG+TGG	0.249030	1_3:-12887048	None:intergenic
GGAAGTGGTGGTGGTGGGGA+TGG	0.284071	1_3:-12887042	None:intergenic
GGTGGGAAGGTGGTGGAGGG+AGG	0.284076	1_3:-12886762	None:intergenic
GGAGAGGGTGGAAGTGGTGG+TGG	0.296005	1_3:-12887051	None:intergenic
CAAGGCTTGTTCTCAGTTTG+TGG	0.308661	1_3:-12887453	None:intergenic
GGGGATGGGCGGACGTGCGG+TGG	0.318107	1_3:-12887027	None:intergenic
TGTGGTGGTGGAGGAGAAAA+TGG	0.318705	1_3:-12886961	None:intergenic
TGGTATGGAGAGGGAGAGGG+TGG	0.325738	1_3:-12887063	None:intergenic
GAAGTGGTGGTGGTGGGGAT+GGG	0.344187	1_3:-12887041	None:intergenic
GGGTGGAAGTGGTGGTGGTG+GGG	0.356370	1_3:-12887046	None:intergenic
GATGGGCGGACGTGCGGTGG+GGG	0.365159	1_3:-12887024	None:intergenic
AGGGTGGAAGTGGTGGTGGT+GGG	0.368895	1_3:-12887047	None:intergenic
GGTGGAGGGAGGTGTGGAAA+TGG	0.372249	1_3:-12886751	None:intergenic
GTGGTGGTGGTGGGGATGGG+CGG	0.372880	1_3:-12887038	None:intergenic
GAGGGAGAGGGTGGAAGTGG+TGG	0.373887	1_3:-12887054	None:intergenic
GGAAATGGAAAGTAGAAATT+TGG	0.376105	1_3:-12886736	None:intergenic
GAAGGTGGTGGAGGGAGGTG+TGG	0.380410	1_3:-12886757	None:intergenic
GGATGAGATGGTGGTGGTGG+AGG	0.385319	1_3:-12886940	None:intergenic
GGAGAGGGAGAGGGTGGAAG+TGG	0.399183	1_3:-12887057	None:intergenic
GGATGGGCGGACGTGCGGTG+GGG	0.410892	1_3:-12887025	None:intergenic
AGGTGATGGAGGAGGATTGA+GGG	0.419461	1_3:-12886785	None:intergenic
AGGGTGGTATGGAGAGGGAG+AGG	0.419591	1_3:-12887067	None:intergenic
GTCATTGTCATCGTTGCATT+TGG	0.420298	1_3:+12887099	Msa0104730:CDS
GGGATGGGCGGACGTGCGGT+GGG	0.422908	1_3:-12887026	None:intergenic
GGGTGTCTGCGTCGAGGAGG+AGG	0.425134	1_3:-12886919	None:intergenic
AGGTGATGGTGGAGGATTGA+GGG	0.437408	1_3:-12886815	None:intergenic
GGGTGGAAAGGTGATGGAGG+AGG	0.438101	1_3:-12886793	None:intergenic
GGTGGGGATGGGCGGACGTG+CGG	0.441861	1_3:-12887030	None:intergenic
AAGGTGATGGAGGAGGATTG+AGG	0.445386	1_3:-12886786	None:intergenic
AAGGTGATGGTGGAGGATTG+AGG	0.449907	1_3:-12886816	None:intergenic
TTGAAGGAATGAGGTGGTGG+AGG	0.459738	1_3:-12886853	None:intergenic
TGTCTGCGTCGAGGAGGAGG+AGG	0.463630	1_3:-12886916	None:intergenic
GAGGTGGTGGAGGGTTAAAA+GGG	0.465798	1_3:-12886843	None:intergenic
CTGCGTCGAGGAGGAGGAGG+AGG	0.466994	1_3:-12886913	None:intergenic
ATTAAGAAGAATGAAGAAGT+TGG	0.477041	1_3:+12887312	Msa0104730:CDS
GGGTGGTATGGAGAGGGAGA+GGG	0.477936	1_3:-12887066	None:intergenic
GATGAGATGGTGGTGGTGGA+GGG	0.485982	1_3:-12886939	None:intergenic
AATGGATGAGATGGTGGTGG+TGG	0.486842	1_3:-12886943	None:intergenic
GGTGGATGCTTGTGTGGTGG+TGG	0.492789	1_3:-12886973	None:intergenic
GAATGAGATGGTGCTGGTGC+AGG	0.508496	1_3:-12886886	None:intergenic
GATGGTGCTGGTGCAGGTGG+TGG	0.517171	1_3:-12886880	None:intergenic
ACAATGACAGTAGGGTGGTA+TGG	0.518977	1_3:-12887078	None:intergenic
GGGTGGAAAGGTGATGGTGG+AGG	0.522390	1_3:-12886823	None:intergenic
GGATGCTTGTGTGGTGGTGG+AGG	0.527119	1_3:-12886970	None:intergenic
ATTGTCATCGTTGCATTTGG+TGG	0.532727	1_3:+12887102	Msa0104730:CDS
GGAGGAGCAATCGGGTGATG+TGG	0.536032	1_3:-12887003	None:intergenic
ACAGTAGGGTGGTATGGAGA+GGG	0.540197	1_3:-12887072	None:intergenic
AAAAGCAAGCATGGCTAGCA+AGG	0.544044	1_3:-12887130	None:intergenic
TGCAGGTGGTGGAGATTTGA+AGG	0.545845	1_3:-12886869	None:intergenic
TGAAGGAATGAGGTGGTGGA+GGG	0.554517	1_3:-12886852	None:intergenic
GATGGCGGTGGATGCTTGTG+TGG	0.554576	1_3:-12886979	None:intergenic
GGAGGAGGGAATGAATGAGA+TGG	0.562435	1_3:-12886898	None:intergenic
GCAATCGGGTGATGTGGAGA+TGG	0.563863	1_3:-12886997	None:intergenic
AAAGGGTGGAAAGGTGATGG+TGG	0.565749	1_3:-12886826	None:intergenic
TGAGATGGTGCTGGTGCAGG+TGG	0.566731	1_3:-12886883	None:intergenic
ATTACGGAAAACATTGTGCC+TGG	0.567513	1_3:+12887228	Msa0104730:CDS
GATTTGAAGGAATGAGGTGG+TGG	0.569065	1_3:-12886856	None:intergenic
GGGTGATGTGGAGATGGCGG+TGG	0.571208	1_3:-12886991	None:intergenic
GGAGGAGAAAATGGATGAGA+TGG	0.577431	1_3:-12886952	None:intergenic
GTGATGGAGGAGGATTGAGG+GGG	0.577674	1_3:-12886783	None:intergenic
AAATAATGCAAAAGCAAGCA+TGG	0.582740	1_3:-12887139	None:intergenic
GGAGGGTGTCTGCGTCGAGG+AGG	0.586355	1_3:-12886922	None:intergenic
TTAAAAGGGTGGAAAGGTGA+TGG	0.587230	1_3:-12886829	None:intergenic
TGTTTCTAGTATCAATGAAG+TGG	0.590053	1_3:+12887383	Msa0104730:CDS
GTGGCAAATACTACTTCTCC+TGG	0.590647	1_3:+12887402	Msa0104730:CDS
GGCGGTGGATGCTTGTGTGG+TGG	0.590895	1_3:-12886976	None:intergenic
ATGACAATGACAATGACAGT+AGG	0.594959	1_3:-12887087	None:intergenic
GGTGGAGATTTGAAGGAATG+AGG	0.598369	1_3:-12886862	None:intergenic
GGAGAAAATGGATGAGATGG+TGG	0.598493	1_3:-12886949	None:intergenic
GTGATGGTGGAGGATTGAGG+GGG	0.598708	1_3:-12886813	None:intergenic
GACAGTAGGGTGGTATGGAG+AGG	0.600632	1_3:-12887073	None:intergenic
GTGGTGGAGGGTTAAAAGGG+TGG	0.608893	1_3:-12886840	None:intergenic
GGGAATGAATGAGATGGTGC+TGG	0.611239	1_3:-12886892	None:intergenic
GGAGGGTTAAAAGGGTGGAA+AGG	0.612341	1_3:-12886835	None:intergenic
TCAACTGTAACCACCACCGT+TGG	0.612957	1_3:-12887264	None:intergenic
GGTGGAGGGTGTCTGCGTCG+AGG	0.615928	1_3:-12886925	None:intergenic
GAAAATGGATGAGATGGTGG+TGG	0.617277	1_3:-12886946	None:intergenic
GGTGATGGAGGAGGATTGAG+GGG	0.622891	1_3:-12886784	None:intergenic
GGTGATGGTGGAGGATTGAG+GGG	0.623247	1_3:-12886814	None:intergenic
TGACAATGACAATGACAGTA+GGG	0.623939	1_3:-12887086	None:intergenic
ATCGGGTGATGTGGAGATGG+CGG	0.626196	1_3:-12886994	None:intergenic
TGATGATCATGTTCATGACC+AGG	0.643098	1_3:-12887420	None:intergenic
TTCATCGATATGAACGACAT+CGG	0.647237	1_3:-12887196	None:intergenic
TGCGTCGAGGAGGAGGAGGA+GGG	0.651558	1_3:-12886912	None:intergenic
GGAGATTTGAAGGAATGAGG+TGG	0.695776	1_3:-12886859	None:intergenic
CAATGACAATGACAGTAGGG+TGG	0.721621	1_3:-12887083	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTAGAAATTTGGTTGATTTA+AGG	-	chr1_3:12886728-12886747	None:intergenic	25.0%
!	CGATGAACATAAAAAGATTA+CGG	+	chr1_3:12887212-12887231	Msa0104730:CDS	25.0%
!	ATTAAGAAGAATGAAGAAGT+TGG	+	chr1_3:12887312-12887331	Msa0104730:CDS	25.0%
!!	GTAGAAATTTGGTTGATTTA+AGG	-	chr1_3:12886728-12886747	None:intergenic	25.0%
!	CGATGAACATAAAAAGATTA+CGG	+	chr1_3:12887212-12887231	Msa0104730:CDS	25.0%
!	ATTAAGAAGAATGAAGAAGT+TGG	+	chr1_3:12887312-12887331	Msa0104730:CDS	25.0%
	GGAAATGGAAAGTAGAAATT+TGG	-	chr1_3:12886739-12886758	None:intergenic	30.0%
	AAATAATGCAAAAGCAAGCA+TGG	-	chr1_3:12887142-12887161	None:intergenic	30.0%
!!	TGTTTCTAGTATCAATGAAG+TGG	+	chr1_3:12887383-12887402	Msa0104730:CDS	30.0%
	GGAAATGGAAAGTAGAAATT+TGG	-	chr1_3:12886739-12886758	None:intergenic	30.0%
	AAATAATGCAAAAGCAAGCA+TGG	-	chr1_3:12887142-12887161	None:intergenic	30.0%
!!	TGTTTCTAGTATCAATGAAG+TGG	+	chr1_3:12887383-12887402	Msa0104730:CDS	30.0%
	TGACAATGACAATGACAGTA+GGG	-	chr1_3:12887089-12887108	None:intergenic	35.0%
	ATGACAATGACAATGACAGT+AGG	-	chr1_3:12887090-12887109	None:intergenic	35.0%
!	TATTTTGCTGCGTTCAAAAG+AGG	+	chr1_3:12887157-12887176	Msa0104730:CDS	35.0%
	TTCATCGATATGAACGACAT+CGG	-	chr1_3:12887199-12887218	None:intergenic	35.0%
	TGACAATGACAATGACAGTA+GGG	-	chr1_3:12887089-12887108	None:intergenic	35.0%
	ATGACAATGACAATGACAGT+AGG	-	chr1_3:12887090-12887109	None:intergenic	35.0%
!	TATTTTGCTGCGTTCAAAAG+AGG	+	chr1_3:12887157-12887176	Msa0104730:CDS	35.0%
	TTCATCGATATGAACGACAT+CGG	-	chr1_3:12887199-12887218	None:intergenic	35.0%
	TTAAAAGGGTGGAAAGGTGA+TGG	-	chr1_3:12886832-12886851	None:intergenic	40.0%
	GTCATTGTCATCGTTGCATT+TGG	+	chr1_3:12887099-12887118	Msa0104730:CDS	40.0%
	ATTGTCATCGTTGCATTTGG+TGG	+	chr1_3:12887102-12887121	Msa0104730:CDS	40.0%
	ATTACGGAAAACATTGTGCC+TGG	+	chr1_3:12887228-12887247	Msa0104730:CDS	40.0%
!!	TGGTCCTTTTGGAAAACCAA+CGG	+	chr1_3:12887248-12887267	Msa0104730:CDS	40.0%
	TGATGATCATGTTCATGACC+AGG	-	chr1_3:12887423-12887442	None:intergenic	40.0%
	TTAAAAGGGTGGAAAGGTGA+TGG	-	chr1_3:12886832-12886851	None:intergenic	40.0%
	GTCATTGTCATCGTTGCATT+TGG	+	chr1_3:12887099-12887118	Msa0104730:CDS	40.0%
	ATTGTCATCGTTGCATTTGG+TGG	+	chr1_3:12887102-12887121	Msa0104730:CDS	40.0%
	ATTACGGAAAACATTGTGCC+TGG	+	chr1_3:12887228-12887247	Msa0104730:CDS	40.0%
!!	TGGTCCTTTTGGAAAACCAA+CGG	+	chr1_3:12887248-12887267	Msa0104730:CDS	40.0%
	TGATGATCATGTTCATGACC+AGG	-	chr1_3:12887423-12887442	None:intergenic	40.0%
	GATTTGAAGGAATGAGGTGG+TGG	-	chr1_3:12886859-12886878	None:intergenic	45.0%
	GGAGATTTGAAGGAATGAGG+TGG	-	chr1_3:12886862-12886881	None:intergenic	45.0%
	GGTGGAGATTTGAAGGAATG+AGG	-	chr1_3:12886865-12886884	None:intergenic	45.0%
!	GAAAATGGATGAGATGGTGG+TGG	-	chr1_3:12886949-12886968	None:intergenic	45.0%
	GGAGAAAATGGATGAGATGG+TGG	-	chr1_3:12886952-12886971	None:intergenic	45.0%
	GGAGGAGAAAATGGATGAGA+TGG	-	chr1_3:12886955-12886974	None:intergenic	45.0%
	ACAATGACAGTAGGGTGGTA+TGG	-	chr1_3:12887081-12887100	None:intergenic	45.0%
	CAATGACAATGACAGTAGGG+TGG	-	chr1_3:12887086-12887105	None:intergenic	45.0%
	AAAAGCAAGCATGGCTAGCA+AGG	-	chr1_3:12887133-12887152	None:intergenic	45.0%
!	AACATTGTGCCTGGTCCTTT+TGG	+	chr1_3:12887237-12887256	Msa0104730:CDS	45.0%
!!!	GTTGGTTTTCCAAAAGGACC+AGG	-	chr1_3:12887249-12887268	None:intergenic	45.0%
!!	TCCTTTTGGAAAACCAACGG+TGG	+	chr1_3:12887251-12887270	Msa0104730:CDS	45.0%
!!!	ACCACCGTTGGTTTTCCAAA+AGG	-	chr1_3:12887255-12887274	None:intergenic	45.0%
!!	TTTTGGAAAACCAACGGTGG+TGG	+	chr1_3:12887254-12887273	Msa0104730:CDS	45.0%
	GTGGCAAATACTACTTCTCC+TGG	+	chr1_3:12887402-12887421	Msa0104730:CDS	45.0%
!	CAAGGCTTGTTCTCAGTTTG+TGG	-	chr1_3:12887456-12887475	None:intergenic	45.0%
	GATTTGAAGGAATGAGGTGG+TGG	-	chr1_3:12886859-12886878	None:intergenic	45.0%
	GGAGATTTGAAGGAATGAGG+TGG	-	chr1_3:12886862-12886881	None:intergenic	45.0%
	GGTGGAGATTTGAAGGAATG+AGG	-	chr1_3:12886865-12886884	None:intergenic	45.0%
!	GAAAATGGATGAGATGGTGG+TGG	-	chr1_3:12886949-12886968	None:intergenic	45.0%
	GGAGAAAATGGATGAGATGG+TGG	-	chr1_3:12886952-12886971	None:intergenic	45.0%
	GGAGGAGAAAATGGATGAGA+TGG	-	chr1_3:12886955-12886974	None:intergenic	45.0%
	ACAATGACAGTAGGGTGGTA+TGG	-	chr1_3:12887081-12887100	None:intergenic	45.0%
	CAATGACAATGACAGTAGGG+TGG	-	chr1_3:12887086-12887105	None:intergenic	45.0%
	AAAAGCAAGCATGGCTAGCA+AGG	-	chr1_3:12887133-12887152	None:intergenic	45.0%
!	AACATTGTGCCTGGTCCTTT+TGG	+	chr1_3:12887237-12887256	Msa0104730:CDS	45.0%
!!!	GTTGGTTTTCCAAAAGGACC+AGG	-	chr1_3:12887249-12887268	None:intergenic	45.0%
!!	TCCTTTTGGAAAACCAACGG+TGG	+	chr1_3:12887251-12887270	Msa0104730:CDS	45.0%
!!!	ACCACCGTTGGTTTTCCAAA+AGG	-	chr1_3:12887255-12887274	None:intergenic	45.0%
!!	TTTTGGAAAACCAACGGTGG+TGG	+	chr1_3:12887254-12887273	Msa0104730:CDS	45.0%
	GTGGCAAATACTACTTCTCC+TGG	+	chr1_3:12887402-12887421	Msa0104730:CDS	45.0%
!	CAAGGCTTGTTCTCAGTTTG+TGG	-	chr1_3:12887456-12887475	None:intergenic	45.0%
!!	AGGTGATGGAGGAGGATTGA+GGG	-	chr1_3:12886788-12886807	None:intergenic	50.0%
!!	AAGGTGATGGAGGAGGATTG+AGG	-	chr1_3:12886789-12886808	None:intergenic	50.0%
!!	AGGTGATGGTGGAGGATTGA+GGG	-	chr1_3:12886818-12886837	None:intergenic	50.0%
!!	AAGGTGATGGTGGAGGATTG+AGG	-	chr1_3:12886819-12886838	None:intergenic	50.0%
!	AAAGGGTGGAAAGGTGATGG+TGG	-	chr1_3:12886829-12886848	None:intergenic	50.0%
	GGAGGGTTAAAAGGGTGGAA+AGG	-	chr1_3:12886838-12886857	None:intergenic	50.0%
!!	GAGGTGGTGGAGGGTTAAAA+GGG	-	chr1_3:12886846-12886865	None:intergenic	50.0%
!!	TGAGGTGGTGGAGGGTTAAA+AGG	-	chr1_3:12886847-12886866	None:intergenic	50.0%
!!	TGAAGGAATGAGGTGGTGGA+GGG	-	chr1_3:12886855-12886874	None:intergenic	50.0%
!	TTGAAGGAATGAGGTGGTGG+AGG	-	chr1_3:12886856-12886875	None:intergenic	50.0%
!!	TGCAGGTGGTGGAGATTTGA+AGG	-	chr1_3:12886872-12886891	None:intergenic	50.0%
	GGGAATGAATGAGATGGTGC+TGG	-	chr1_3:12886895-12886914	None:intergenic	50.0%
	GGAGGAGGGAATGAATGAGA+TGG	-	chr1_3:12886901-12886920	None:intergenic	50.0%
!!	AATGGATGAGATGGTGGTGG+TGG	-	chr1_3:12886946-12886965	None:intergenic	50.0%
!!	TGTGGTGGTGGAGGAGAAAA+TGG	-	chr1_3:12886964-12886983	None:intergenic	50.0%
	ACAGTAGGGTGGTATGGAGA+GGG	-	chr1_3:12887075-12887094	None:intergenic	50.0%
	TCAACTGTAACCACCACCGT+TGG	-	chr1_3:12887267-12887286	None:intergenic	50.0%
!!	AGGTGATGGAGGAGGATTGA+GGG	-	chr1_3:12886788-12886807	None:intergenic	50.0%
!!	AAGGTGATGGAGGAGGATTG+AGG	-	chr1_3:12886789-12886808	None:intergenic	50.0%
!!	AGGTGATGGTGGAGGATTGA+GGG	-	chr1_3:12886818-12886837	None:intergenic	50.0%
!!	AAGGTGATGGTGGAGGATTG+AGG	-	chr1_3:12886819-12886838	None:intergenic	50.0%
!	AAAGGGTGGAAAGGTGATGG+TGG	-	chr1_3:12886829-12886848	None:intergenic	50.0%
	GGAGGGTTAAAAGGGTGGAA+AGG	-	chr1_3:12886838-12886857	None:intergenic	50.0%
!!	GAGGTGGTGGAGGGTTAAAA+GGG	-	chr1_3:12886846-12886865	None:intergenic	50.0%
!!	TGAGGTGGTGGAGGGTTAAA+AGG	-	chr1_3:12886847-12886866	None:intergenic	50.0%
!!	TGAAGGAATGAGGTGGTGGA+GGG	-	chr1_3:12886855-12886874	None:intergenic	50.0%
!	TTGAAGGAATGAGGTGGTGG+AGG	-	chr1_3:12886856-12886875	None:intergenic	50.0%
!!	TGCAGGTGGTGGAGATTTGA+AGG	-	chr1_3:12886872-12886891	None:intergenic	50.0%
	GGGAATGAATGAGATGGTGC+TGG	-	chr1_3:12886895-12886914	None:intergenic	50.0%
	GGAGGAGGGAATGAATGAGA+TGG	-	chr1_3:12886901-12886920	None:intergenic	50.0%
!!	AATGGATGAGATGGTGGTGG+TGG	-	chr1_3:12886946-12886965	None:intergenic	50.0%
!!	TGTGGTGGTGGAGGAGAAAA+TGG	-	chr1_3:12886964-12886983	None:intergenic	50.0%
	ACAGTAGGGTGGTATGGAGA+GGG	-	chr1_3:12887075-12887094	None:intergenic	50.0%
	TCAACTGTAACCACCACCGT+TGG	-	chr1_3:12887267-12887286	None:intergenic	50.0%
!	GTGATGGAGGAGGATTGAGG+GGG	-	chr1_3:12886786-12886805	None:intergenic	55.0%
!!	GGTGATGGAGGAGGATTGAG+GGG	-	chr1_3:12886787-12886806	None:intergenic	55.0%
	TTGAGGGGGTGGAAAGGTGA+TGG	-	chr1_3:12886802-12886821	None:intergenic	55.0%
!!	GTGATGGTGGAGGATTGAGG+GGG	-	chr1_3:12886816-12886835	None:intergenic	55.0%
!!	GGTGATGGTGGAGGATTGAG+GGG	-	chr1_3:12886817-12886836	None:intergenic	55.0%
!	GTGGTGGAGGGTTAAAAGGG+TGG	-	chr1_3:12886843-12886862	None:intergenic	55.0%
!!	GAATGAGATGGTGCTGGTGC+AGG	-	chr1_3:12886889-12886908	None:intergenic	55.0%
!!	GATGAGATGGTGGTGGTGGA+GGG	-	chr1_3:12886942-12886961	None:intergenic	55.0%
	ATCGGGTGATGTGGAGATGG+CGG	-	chr1_3:12886997-12887016	None:intergenic	55.0%
	GCAATCGGGTGATGTGGAGA+TGG	-	chr1_3:12887000-12887019	None:intergenic	55.0%
	GACAGTAGGGTGGTATGGAG+AGG	-	chr1_3:12887076-12887095	None:intergenic	55.0%
!	GTGATGGAGGAGGATTGAGG+GGG	-	chr1_3:12886786-12886805	None:intergenic	55.0%
!!	GGTGATGGAGGAGGATTGAG+GGG	-	chr1_3:12886787-12886806	None:intergenic	55.0%
	TTGAGGGGGTGGAAAGGTGA+TGG	-	chr1_3:12886802-12886821	None:intergenic	55.0%
!!	GTGATGGTGGAGGATTGAGG+GGG	-	chr1_3:12886816-12886835	None:intergenic	55.0%
!!	GGTGATGGTGGAGGATTGAG+GGG	-	chr1_3:12886817-12886836	None:intergenic	55.0%
!	GTGGTGGAGGGTTAAAAGGG+TGG	-	chr1_3:12886843-12886862	None:intergenic	55.0%
!!	GAATGAGATGGTGCTGGTGC+AGG	-	chr1_3:12886889-12886908	None:intergenic	55.0%
!!	GATGAGATGGTGGTGGTGGA+GGG	-	chr1_3:12886942-12886961	None:intergenic	55.0%
	ATCGGGTGATGTGGAGATGG+CGG	-	chr1_3:12886997-12887016	None:intergenic	55.0%
	GCAATCGGGTGATGTGGAGA+TGG	-	chr1_3:12887000-12887019	None:intergenic	55.0%
	GACAGTAGGGTGGTATGGAG+AGG	-	chr1_3:12887076-12887095	None:intergenic	55.0%
!	GGTGGAGGGAGGTGTGGAAA+TGG	-	chr1_3:12886754-12886773	None:intergenic	60.0%
	TGGAGGAGGATTGAGGGGGT+GGG	-	chr1_3:12886782-12886801	None:intergenic	60.0%
	ATGGAGGAGGATTGAGGGGG+TGG	-	chr1_3:12886783-12886802	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGAGG+AGG	-	chr1_3:12886796-12886815	None:intergenic	60.0%
!	AGGGGGTGGAAAGGTGATGG+AGG	-	chr1_3:12886799-12886818	None:intergenic	60.0%
	GGAGGATTGAGGGGGTGGAA+AGG	-	chr1_3:12886808-12886827	None:intergenic	60.0%
!	ATGGTGGAGGATTGAGGGGG+TGG	-	chr1_3:12886813-12886832	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGTGG+AGG	-	chr1_3:12886826-12886845	None:intergenic	60.0%
!!	TGAGATGGTGCTGGTGCAGG+TGG	-	chr1_3:12886886-12886905	None:intergenic	60.0%
!!	GGATGAGATGGTGGTGGTGG+AGG	-	chr1_3:12886943-12886962	None:intergenic	60.0%
!!	GGATGCTTGTGTGGTGGTGG+AGG	-	chr1_3:12886973-12886992	None:intergenic	60.0%
	GGTGGATGCTTGTGTGGTGG+TGG	-	chr1_3:12886976-12886995	None:intergenic	60.0%
!	GATGGCGGTGGATGCTTGTG+TGG	-	chr1_3:12886982-12887001	None:intergenic	60.0%
	GGAGGAGCAATCGGGTGATG+TGG	-	chr1_3:12887006-12887025	None:intergenic	60.0%
!!	GAAGTGGTGGTGGTGGGGAT+GGG	-	chr1_3:12887044-12887063	None:intergenic	60.0%
!!	AGGGTGGAAGTGGTGGTGGT+GGG	-	chr1_3:12887050-12887069	None:intergenic	60.0%
	TGGTATGGAGAGGGAGAGGG+TGG	-	chr1_3:12887066-12887085	None:intergenic	60.0%
	GGGTGGTATGGAGAGGGAGA+GGG	-	chr1_3:12887069-12887088	None:intergenic	60.0%
	AGGGTGGTATGGAGAGGGAG+AGG	-	chr1_3:12887070-12887089	None:intergenic	60.0%
!	GGTGGAGGGAGGTGTGGAAA+TGG	-	chr1_3:12886754-12886773	None:intergenic	60.0%
	TGGAGGAGGATTGAGGGGGT+GGG	-	chr1_3:12886782-12886801	None:intergenic	60.0%
	ATGGAGGAGGATTGAGGGGG+TGG	-	chr1_3:12886783-12886802	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGAGG+AGG	-	chr1_3:12886796-12886815	None:intergenic	60.0%
!	AGGGGGTGGAAAGGTGATGG+AGG	-	chr1_3:12886799-12886818	None:intergenic	60.0%
	GGAGGATTGAGGGGGTGGAA+AGG	-	chr1_3:12886808-12886827	None:intergenic	60.0%
!	ATGGTGGAGGATTGAGGGGG+TGG	-	chr1_3:12886813-12886832	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGTGG+AGG	-	chr1_3:12886826-12886845	None:intergenic	60.0%
!!	TGAGATGGTGCTGGTGCAGG+TGG	-	chr1_3:12886886-12886905	None:intergenic	60.0%
!!	GGATGAGATGGTGGTGGTGG+AGG	-	chr1_3:12886943-12886962	None:intergenic	60.0%
!!	GGATGCTTGTGTGGTGGTGG+AGG	-	chr1_3:12886973-12886992	None:intergenic	60.0%
	GGTGGATGCTTGTGTGGTGG+TGG	-	chr1_3:12886976-12886995	None:intergenic	60.0%
!	GATGGCGGTGGATGCTTGTG+TGG	-	chr1_3:12886982-12887001	None:intergenic	60.0%
	GGAGGAGCAATCGGGTGATG+TGG	-	chr1_3:12887006-12887025	None:intergenic	60.0%
!!	GAAGTGGTGGTGGTGGGGAT+GGG	-	chr1_3:12887044-12887063	None:intergenic	60.0%
!!	AGGGTGGAAGTGGTGGTGGT+GGG	-	chr1_3:12887050-12887069	None:intergenic	60.0%
	TGGTATGGAGAGGGAGAGGG+TGG	-	chr1_3:12887066-12887085	None:intergenic	60.0%
	GGGTGGTATGGAGAGGGAGA+GGG	-	chr1_3:12887069-12887088	None:intergenic	60.0%
	AGGGTGGTATGGAGAGGGAG+AGG	-	chr1_3:12887070-12887089	None:intergenic	60.0%
!!	GAAGGTGGTGGAGGGAGGTG+TGG	-	chr1_3:12886760-12886779	None:intergenic	65.0%
	TTGAGGGGGTGGGAAGGTGG+TGG	-	chr1_3:12886772-12886791	None:intergenic	65.0%
	GGATTGAGGGGGTGGGAAGG+TGG	-	chr1_3:12886775-12886794	None:intergenic	65.0%
	GGAGGATTGAGGGGGTGGGA+AGG	-	chr1_3:12886778-12886797	None:intergenic	65.0%
!!	GATGGTGCTGGTGCAGGTGG+TGG	-	chr1_3:12886883-12886902	None:intergenic	65.0%
	TGCGTCGAGGAGGAGGAGGA+GGG	-	chr1_3:12886915-12886934	None:intergenic	65.0%
	TGTCTGCGTCGAGGAGGAGG+AGG	-	chr1_3:12886919-12886938	None:intergenic	65.0%
	GGCGGTGGATGCTTGTGTGG+TGG	-	chr1_3:12886979-12886998	None:intergenic	65.0%
!	GGGTGATGTGGAGATGGCGG+TGG	-	chr1_3:12886994-12887013	None:intergenic	65.0%
	TGCGGTGGGGGAGGAGCAAT+CGG	-	chr1_3:12887015-12887034	None:intergenic	65.0%
!!	GGAAGTGGTGGTGGTGGGGA+TGG	-	chr1_3:12887045-12887064	None:intergenic	65.0%
!!	GGGTGGAAGTGGTGGTGGTG+GGG	-	chr1_3:12887049-12887068	None:intergenic	65.0%
!!	GAGGGTGGAAGTGGTGGTGG+TGG	-	chr1_3:12887051-12887070	None:intergenic	65.0%
	GGAGAGGGTGGAAGTGGTGG+TGG	-	chr1_3:12887054-12887073	None:intergenic	65.0%
	GAGGGAGAGGGTGGAAGTGG+TGG	-	chr1_3:12887057-12887076	None:intergenic	65.0%
	GGAGAGGGAGAGGGTGGAAG+TGG	-	chr1_3:12887060-12887079	None:intergenic	65.0%
!!	GAAGGTGGTGGAGGGAGGTG+TGG	-	chr1_3:12886760-12886779	None:intergenic	65.0%
	TTGAGGGGGTGGGAAGGTGG+TGG	-	chr1_3:12886772-12886791	None:intergenic	65.0%
	GGATTGAGGGGGTGGGAAGG+TGG	-	chr1_3:12886775-12886794	None:intergenic	65.0%
	GGAGGATTGAGGGGGTGGGA+AGG	-	chr1_3:12886778-12886797	None:intergenic	65.0%
!!	GATGGTGCTGGTGCAGGTGG+TGG	-	chr1_3:12886883-12886902	None:intergenic	65.0%
	TGCGTCGAGGAGGAGGAGGA+GGG	-	chr1_3:12886915-12886934	None:intergenic	65.0%
	TGTCTGCGTCGAGGAGGAGG+AGG	-	chr1_3:12886919-12886938	None:intergenic	65.0%
	GGCGGTGGATGCTTGTGTGG+TGG	-	chr1_3:12886979-12886998	None:intergenic	65.0%
!	GGGTGATGTGGAGATGGCGG+TGG	-	chr1_3:12886994-12887013	None:intergenic	65.0%
	TGCGGTGGGGGAGGAGCAAT+CGG	-	chr1_3:12887015-12887034	None:intergenic	65.0%
!!	GGAAGTGGTGGTGGTGGGGA+TGG	-	chr1_3:12887045-12887064	None:intergenic	65.0%
!!	GGGTGGAAGTGGTGGTGGTG+GGG	-	chr1_3:12887049-12887068	None:intergenic	65.0%
!!	GAGGGTGGAAGTGGTGGTGG+TGG	-	chr1_3:12887051-12887070	None:intergenic	65.0%
	GGAGAGGGTGGAAGTGGTGG+TGG	-	chr1_3:12887054-12887073	None:intergenic	65.0%
	GAGGGAGAGGGTGGAAGTGG+TGG	-	chr1_3:12887057-12887076	None:intergenic	65.0%
	GGAGAGGGAGAGGGTGGAAG+TGG	-	chr1_3:12887060-12887079	None:intergenic	65.0%
!!	GGTGGGAAGGTGGTGGAGGG+AGG	-	chr1_3:12886765-12886784	None:intergenic	70.0%
!!	GGGGGTGGGAAGGTGGTGGA+GGG	-	chr1_3:12886768-12886787	None:intergenic	70.0%
!	AGGGGGTGGGAAGGTGGTGG+AGG	-	chr1_3:12886769-12886788	None:intergenic	70.0%
	CTGCGTCGAGGAGGAGGAGG+AGG	-	chr1_3:12886916-12886935	None:intergenic	70.0%
	GGGTGTCTGCGTCGAGGAGG+AGG	-	chr1_3:12886922-12886941	None:intergenic	70.0%
!!	GGAGGGTGTCTGCGTCGAGG+AGG	-	chr1_3:12886925-12886944	None:intergenic	70.0%
!!	GGTGGAGGGTGTCTGCGTCG+AGG	-	chr1_3:12886928-12886947	None:intergenic	70.0%
	GCGGTGGGGGAGGAGCAATC+GGG	-	chr1_3:12887014-12887033	None:intergenic	70.0%
!!	GTGGTGGTGGTGGGGATGGG+CGG	-	chr1_3:12887041-12887060	None:intergenic	70.0%
!!	GGTGGGAAGGTGGTGGAGGG+AGG	-	chr1_3:12886765-12886784	None:intergenic	70.0%
!!	GGGGGTGGGAAGGTGGTGGA+GGG	-	chr1_3:12886768-12886787	None:intergenic	70.0%
!	AGGGGGTGGGAAGGTGGTGG+AGG	-	chr1_3:12886769-12886788	None:intergenic	70.0%
	CTGCGTCGAGGAGGAGGAGG+AGG	-	chr1_3:12886916-12886935	None:intergenic	70.0%
	GGGTGTCTGCGTCGAGGAGG+AGG	-	chr1_3:12886922-12886941	None:intergenic	70.0%
!!	GGAGGGTGTCTGCGTCGAGG+AGG	-	chr1_3:12886925-12886944	None:intergenic	70.0%
!!	GGTGGAGGGTGTCTGCGTCG+AGG	-	chr1_3:12886928-12886947	None:intergenic	70.0%
	GCGGTGGGGGAGGAGCAATC+GGG	-	chr1_3:12887014-12887033	None:intergenic	70.0%
!!	GTGGTGGTGGTGGGGATGGG+CGG	-	chr1_3:12887041-12887060	None:intergenic	70.0%
	GATGGGCGGACGTGCGGTGG+GGG	-	chr1_3:12887027-12887046	None:intergenic	75.0%
	GGATGGGCGGACGTGCGGTG+GGG	-	chr1_3:12887028-12887047	None:intergenic	75.0%
	GGGATGGGCGGACGTGCGGT+GGG	-	chr1_3:12887029-12887048	None:intergenic	75.0%
	GGTGGGGATGGGCGGACGTG+CGG	-	chr1_3:12887033-12887052	None:intergenic	75.0%
	GATGGGCGGACGTGCGGTGG+GGG	-	chr1_3:12887027-12887046	None:intergenic	75.0%
	GGATGGGCGGACGTGCGGTG+GGG	-	chr1_3:12887028-12887047	None:intergenic	75.0%
	GGGATGGGCGGACGTGCGGT+GGG	-	chr1_3:12887029-12887048	None:intergenic	75.0%
	GGTGGGGATGGGCGGACGTG+CGG	-	chr1_3:12887033-12887052	None:intergenic	75.0%
!	GGGGATGGGCGGACGTGCGG+TGG	-	chr1_3:12887030-12887049	None:intergenic	80.0%
!	GGGGATGGGCGGACGTGCGG+TGG	-	chr1_3:12887030-12887049	None:intergenic	80.0%
!	GGGCGGACGTGCGGTGGGGG+AGG	-	chr1_3:12887024-12887043	None:intergenic	85.0%
!	GGGCGGACGTGCGGTGGGGG+AGG	-	chr1_3:12887024-12887043	None:intergenic	85.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	12886721	12887476	12886721	ID=Msa0104730;Name=Msa0104730
chr1_3	mRNA	12886721	12887476	12886721	ID=Msa0104730-mRNA-1;Parent=Msa0104730;Name=Msa0104730-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|251
chr1_3	exon	12886721	12887476	12886721	ID=Msa0104730-mRNA-1:exon:5057;Parent=Msa0104730-mRNA-1
chr1_3	CDS	12886721	12887476	12886721	ID=Msa0104730-mRNA-1:cds;Parent=Msa0104730-mRNA-1

Gene Sequence

>Msa0104730

ATGGCCTTAAATCAACCAAATTTCTACTTTCCATTTCCACACCTCCCTCCACCACCTTCCCACCCCCTCAATCCTCCTCCATCACCTTTCCACCCCCTCAATCCTCCACCATCACCTTTCCACCCTTTTAACCCTCCACCACCTCATTCCTTCAAATCTCCACCACCTGCACCAGCACCATCTCATTCATTCCCTCCTCCTCCTCCTCGACGCAGACACCCTCCACCACCACCATCTCATCCATTTTCTCCTCCACCACCACACAAGCATCCACCGCCATCTCCACATCACCCGATTGCTCCTCCCCCACCGCACGTCCGCCCATCCCCACCACCACCACTTCCACCCTCTCCCTCTCCATACCACCCTACTGTCATTGTCATTGTCATCGTTGCATTTGGTGGCATTGCCTTGCTAGCCATGCTTGCTTTTGCATTATTTTGCTGCGTTCAAAAGAGGAAGAAGAAACAAGAAACCGATGTCGTTCATATCGATGAACATAAAAAGATTACGGAAAACATTGTGCCTGGTCCTTTTGGAAAACCAACGGTGGTGGTTACAGTTGAAGATGATGTTCATATTGATGAAGTAATTAAGAAGAATGAAGAAGTTGGTCATGCTTTACATGCTGAAGCATCAAAAGTTGAATCAAATCAAGATAATGTTTCTAGTATCAATGAAGTGGCAAATACTACTTCTCCTGGTCATGAACATGATCATCATCATATTCAGCCACAAACTGAGAACAAGCCTTGA

Protein sequence

>Msa0104730

MALNQPNFYFPFPHLPPPPSHPLNPPPSPFHPLNPPPSPFHPFNPPPPHSFKSPPPAPAPSHSFPPPPPRRRHPPPPPSHPFSPPPPHKHPPPSPHHPIAPPPPHVRPSPPPPLPPSPSPYHPTVIVIVIVAFGGIALLAMLAFALFCCVQKRKKKQETDVVHIDEHKKITENIVPGPFGKPTVVVTVEDDVHIDEVIKKNEEVGHALHAEASKVESNQDNVSSINEVANTTSPGHEHDHHHIQPQTENKP*