AlfalfaGEDB | Msa0623050

M. sativa cultivar zhongmu-4 / Msa0623050

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623050	XP_013466412.1	92.366	131	10	0	121	251	120	250	3.70e-71	228

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623050	sp\|Q8LBX7\|TED6_ARATH	40.404	99	56	2	108	203	2	100	8.58e-15	71.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0039640	Msa0623050	0.849553	3.002967e-60	-8.615850e-47
Msa0087280	Msa0623050	0.827318	1.671473e-54	-8.615850e-47
Msa0104730	Msa0623050	0.953603	1.904302e-111	-8.615850e-47
Msa0623050	Msa0799170	0.855754	5.103832e-62	-8.615850e-47
Msa0623050	Msa0837610	0.847967	8.270948e-60	-8.615850e-47
Msa0623050	Msa1040610	0.829720	4.396765e-55	-8.615850e-47
Msa0623050	Msa1127570	0.809770	1.605571e-50	-8.615850e-47
Msa0623050	Msa1127620	0.836625	8.384703e-57	-8.615850e-47
Msa0623050	Msa1257740	0.820539	6.501281e-53	-8.615850e-47
Msa0623050	Msa1257830	0.822170	2.734142e-53	-8.615850e-47
Msa0623050	Msa1329140	0.831954	1.245482e-55	-8.615850e-47
Msa0623050	Msa1329190	0.812887	3.382052e-51	-8.615850e-47
Msa0623050	Msa1329220	0.844595	6.860917e-59	-8.615850e-47
Msa0133920	Msa0623050	0.829319	5.502844e-55	-8.615850e-47
Msa0154760	Msa0623050	0.828114	1.076005e-54	-8.615850e-47
Msa0228680	Msa0623050	0.940581	1.826930e-100	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623050	MtrunA17_Chr1g0159311	92.366	131	10	0	121	251	120	250	3.40e-75	228
Msa0623050	MtrunA17_Chr1g0147361	57.609	92	37	2	123	213	6	96	4.74e-34	121
Msa0623050	MtrunA17_Chr1g0147381	60.465	86	31	2	134	217	21	105	1.70e-30	115
Msa0623050	MtrunA17_Chr1g0147381	48.958	96	38	3	156	251	216	300	1.39e-19	85.9
Msa0623050	MtrunA17_Chr1g0147381	58.065	62	25	1	156	217	102	162	2.56e-15	73.9
Msa0623050	MtrunA17_Chr1g0147381	58.065	62	25	1	156	217	159	219	2.56e-15	73.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623050	AT1G43790.1	40.404	99	56	2	108	203	2	100	8.72e-16	71.6

Find 88 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTAGAAATTTGGTTGATTTA+AGG	0.184346	4_3:+226240	None:intergenic
AACATTGTGCCTGGTCCTTT+TGG	0.220442	4_3:-225728	Msa0623050:CDS
TGAGGTGGTGGAGGGTTAAA+AGG	0.248017	4_3:+226121	None:intergenic
GAGGGTGGAAGTGGTGGTGG+TGG	0.249030	4_3:+225917	None:intergenic
GGAAGTGGTGGTGGTGGGGA+TGG	0.284071	4_3:+225923	None:intergenic
GGTGGGAAGGTGGTGGAGGG+AGG	0.284076	4_3:+226203	None:intergenic
GGAGAGGGTGGAAGTGGTGG+TGG	0.296005	4_3:+225914	None:intergenic
CAAGGCTTGTTCTCAGTTTG+TGG	0.308661	4_3:+225512	None:intergenic
GGGGATGGGCGGACGTGCGG+TGG	0.318107	4_3:+225938	None:intergenic
TGTGGTGGTGGAGGAGAAAA+TGG	0.318705	4_3:+226004	None:intergenic
TGGTATGGAGAGGGAGAGGG+TGG	0.325738	4_3:+225902	None:intergenic
GAAGTGGTGGTGGTGGGGAT+GGG	0.344187	4_3:+225924	None:intergenic
GGGTGGAAGTGGTGGTGGTG+GGG	0.356370	4_3:+225919	None:intergenic
GATGGGCGGACGTGCGGTGG+GGG	0.365159	4_3:+225941	None:intergenic
AGGGTGGAAGTGGTGGTGGT+GGG	0.368895	4_3:+225918	None:intergenic
GGTGGAGGGAGGTGTGGAAA+TGG	0.372249	4_3:+226214	None:intergenic
GTGGTGGTGGTGGGGATGGG+CGG	0.372880	4_3:+225927	None:intergenic
GAGGGAGAGGGTGGAAGTGG+TGG	0.373887	4_3:+225911	None:intergenic
GGAAATGGAAAGTAGAAATT+TGG	0.376105	4_3:+226229	None:intergenic
GAAGGTGGTGGAGGGAGGTG+TGG	0.380410	4_3:+226208	None:intergenic
GGATGAGATGGTGGTGGTGG+AGG	0.385319	4_3:+226025	None:intergenic
GGAGAGGGAGAGGGTGGAAG+TGG	0.399183	4_3:+225908	None:intergenic
GGATGGGCGGACGTGCGGTG+GGG	0.410892	4_3:+225940	None:intergenic
AGGTGATGGAGGAGGATTGA+GGG	0.419461	4_3:+226180	None:intergenic
AGGGTGGTATGGAGAGGGAG+AGG	0.419591	4_3:+225898	None:intergenic
GTCATTGTCATCGTTGCATT+TGG	0.420298	4_3:-225866	Msa0623050:CDS
GGGATGGGCGGACGTGCGGT+GGG	0.422908	4_3:+225939	None:intergenic
GGGTGTCTGCGTCGAGGAGG+AGG	0.425134	4_3:+226046	None:intergenic
AGGTGATGGTGGAGGATTGA+GGG	0.437408	4_3:+226150	None:intergenic
GGGTGGAAAGGTGATGGAGG+AGG	0.438101	4_3:+226172	None:intergenic
GGTGGGGATGGGCGGACGTG+CGG	0.441861	4_3:+225935	None:intergenic
AAGGTGATGGAGGAGGATTG+AGG	0.445386	4_3:+226179	None:intergenic
AAGGTGATGGTGGAGGATTG+AGG	0.449907	4_3:+226149	None:intergenic
TTGAAGGAATGAGGTGGTGG+AGG	0.459738	4_3:+226112	None:intergenic
TGTCTGCGTCGAGGAGGAGG+AGG	0.463630	4_3:+226049	None:intergenic
GAGGTGGTGGAGGGTTAAAA+GGG	0.465798	4_3:+226122	None:intergenic
CTGCGTCGAGGAGGAGGAGG+AGG	0.466994	4_3:+226052	None:intergenic
ATTAAGAAGAATGAAGAAGT+TGG	0.477041	4_3:-225653	Msa0623050:CDS
GGGTGGTATGGAGAGGGAGA+GGG	0.477936	4_3:+225899	None:intergenic
GATGAGATGGTGGTGGTGGA+GGG	0.485982	4_3:+226026	None:intergenic
AATGGATGAGATGGTGGTGG+TGG	0.486842	4_3:+226022	None:intergenic
GGTGGATGCTTGTGTGGTGG+TGG	0.492789	4_3:+225992	None:intergenic
GAATGAGATGGTGCTGGTGC+AGG	0.508496	4_3:+226079	None:intergenic
GATGGTGCTGGTGCAGGTGG+TGG	0.517171	4_3:+226085	None:intergenic
ACAATGACAGTAGGGTGGTA+TGG	0.518977	4_3:+225887	None:intergenic
GGGTGGAAAGGTGATGGTGG+AGG	0.522390	4_3:+226142	None:intergenic
GGATGCTTGTGTGGTGGTGG+AGG	0.527119	4_3:+225995	None:intergenic
ATTGTCATCGTTGCATTTGG+TGG	0.532727	4_3:-225863	Msa0623050:CDS
GGAGGAGCAATCGGGTGATG+TGG	0.536032	4_3:+225962	None:intergenic
ACAGTAGGGTGGTATGGAGA+GGG	0.540197	4_3:+225893	None:intergenic
AAAAGCAAGCATGGCTAGCA+AGG	0.544044	4_3:+225835	None:intergenic
TGCAGGTGGTGGAGATTTGA+AGG	0.545845	4_3:+226096	None:intergenic
TGAAGGAATGAGGTGGTGGA+GGG	0.554517	4_3:+226113	None:intergenic
GATGGCGGTGGATGCTTGTG+TGG	0.554576	4_3:+225986	None:intergenic
GGAGGAGGGAATGAATGAGA+TGG	0.562435	4_3:+226067	None:intergenic
GCAATCGGGTGATGTGGAGA+TGG	0.563863	4_3:+225968	None:intergenic
AAAGGGTGGAAAGGTGATGG+TGG	0.565749	4_3:+226139	None:intergenic
TGAGATGGTGCTGGTGCAGG+TGG	0.566731	4_3:+226082	None:intergenic
ATTACGGAAAACATTGTGCC+TGG	0.567513	4_3:-225737	Msa0623050:CDS
GATTTGAAGGAATGAGGTGG+TGG	0.569065	4_3:+226109	None:intergenic
GGGTGATGTGGAGATGGCGG+TGG	0.571208	4_3:+225974	None:intergenic
GGAGGAGAAAATGGATGAGA+TGG	0.577431	4_3:+226013	None:intergenic
GTGATGGAGGAGGATTGAGG+GGG	0.577674	4_3:+226182	None:intergenic
AAATAATGCAAAAGCAAGCA+TGG	0.582740	4_3:+225826	None:intergenic
GGAGGGTGTCTGCGTCGAGG+AGG	0.586355	4_3:+226043	None:intergenic
TTAAAAGGGTGGAAAGGTGA+TGG	0.587230	4_3:+226136	None:intergenic
TGTTTCTAGTATCAATGAAG+TGG	0.590053	4_3:-225582	Msa0623050:CDS
GTGGCAAATACTACTTCTCC+TGG	0.590647	4_3:-225563	Msa0623050:CDS
GGCGGTGGATGCTTGTGTGG+TGG	0.590895	4_3:+225989	None:intergenic
ATGACAATGACAATGACAGT+AGG	0.594959	4_3:+225878	None:intergenic
GGTGGAGATTTGAAGGAATG+AGG	0.598369	4_3:+226103	None:intergenic
GGAGAAAATGGATGAGATGG+TGG	0.598493	4_3:+226016	None:intergenic
GTGATGGTGGAGGATTGAGG+GGG	0.598708	4_3:+226152	None:intergenic
GACAGTAGGGTGGTATGGAG+AGG	0.600632	4_3:+225892	None:intergenic
GTGGTGGAGGGTTAAAAGGG+TGG	0.608893	4_3:+226125	None:intergenic
GGGAATGAATGAGATGGTGC+TGG	0.611239	4_3:+226073	None:intergenic
GGAGGGTTAAAAGGGTGGAA+AGG	0.612341	4_3:+226130	None:intergenic
TCAACTGTAACCACCACCGT+TGG	0.612957	4_3:+225701	None:intergenic
GGTGGAGGGTGTCTGCGTCG+AGG	0.615928	4_3:+226040	None:intergenic
GAAAATGGATGAGATGGTGG+TGG	0.617277	4_3:+226019	None:intergenic
GGTGATGGAGGAGGATTGAG+GGG	0.622891	4_3:+226181	None:intergenic
GGTGATGGTGGAGGATTGAG+GGG	0.623247	4_3:+226151	None:intergenic
TGACAATGACAATGACAGTA+GGG	0.623939	4_3:+225879	None:intergenic
ATCGGGTGATGTGGAGATGG+CGG	0.626196	4_3:+225971	None:intergenic
TGATGATCATGTTCATGACC+AGG	0.643098	4_3:+225545	None:intergenic
TGCGTCGAGGAGGAGGAGGA+GGG	0.651558	4_3:+226053	None:intergenic
GGAGATTTGAAGGAATGAGG+TGG	0.695776	4_3:+226106	None:intergenic
CAATGACAATGACAGTAGGG+TGG	0.721621	4_3:+225882	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTAGAAATTTGGTTGATTTA+AGG	+	chr4_3:225518-225537	None:intergenic	25.0%
!	CGATGAACATAAAAAGATTA+CGG	-	chr4_3:226002-226021	Msa0623050:CDS	25.0%
!	ATTAAGAAGAATGAAGAAGT+TGG	-	chr4_3:226102-226121	Msa0623050:CDS	25.0%
!!	GTAGAAATTTGGTTGATTTA+AGG	+	chr4_3:225518-225537	None:intergenic	25.0%
!	CGATGAACATAAAAAGATTA+CGG	-	chr4_3:226002-226021	Msa0623050:CDS	25.0%
!	ATTAAGAAGAATGAAGAAGT+TGG	-	chr4_3:226102-226121	Msa0623050:CDS	25.0%
	GGAAATGGAAAGTAGAAATT+TGG	+	chr4_3:225529-225548	None:intergenic	30.0%
	AAATAATGCAAAAGCAAGCA+TGG	+	chr4_3:225932-225951	None:intergenic	30.0%
!!	TGTTTCTAGTATCAATGAAG+TGG	-	chr4_3:226173-226192	Msa0623050:CDS	30.0%
	GGAAATGGAAAGTAGAAATT+TGG	+	chr4_3:225529-225548	None:intergenic	30.0%
	AAATAATGCAAAAGCAAGCA+TGG	+	chr4_3:225932-225951	None:intergenic	30.0%
!!	TGTTTCTAGTATCAATGAAG+TGG	-	chr4_3:226173-226192	Msa0623050:CDS	30.0%
	TGACAATGACAATGACAGTA+GGG	+	chr4_3:225879-225898	None:intergenic	35.0%
	ATGACAATGACAATGACAGT+AGG	+	chr4_3:225880-225899	None:intergenic	35.0%
!	TATTTTGCTGCGTTCAAAAG+AGG	-	chr4_3:225947-225966	Msa0623050:CDS	35.0%
	TGACAATGACAATGACAGTA+GGG	+	chr4_3:225879-225898	None:intergenic	35.0%
	ATGACAATGACAATGACAGT+AGG	+	chr4_3:225880-225899	None:intergenic	35.0%
!	TATTTTGCTGCGTTCAAAAG+AGG	-	chr4_3:225947-225966	Msa0623050:CDS	35.0%
	TTAAAAGGGTGGAAAGGTGA+TGG	+	chr4_3:225622-225641	None:intergenic	40.0%
	GTCATTGTCATCGTTGCATT+TGG	-	chr4_3:225889-225908	Msa0623050:CDS	40.0%
	ATTGTCATCGTTGCATTTGG+TGG	-	chr4_3:225892-225911	Msa0623050:CDS	40.0%
	ATTACGGAAAACATTGTGCC+TGG	-	chr4_3:226018-226037	Msa0623050:CDS	40.0%
!!	TGGTCCTTTTGGAAAACCAA+CGG	-	chr4_3:226038-226057	Msa0623050:CDS	40.0%
	TGATGATCATGTTCATGACC+AGG	+	chr4_3:226213-226232	None:intergenic	40.0%
	TTAAAAGGGTGGAAAGGTGA+TGG	+	chr4_3:225622-225641	None:intergenic	40.0%
	GTCATTGTCATCGTTGCATT+TGG	-	chr4_3:225889-225908	Msa0623050:CDS	40.0%
	ATTGTCATCGTTGCATTTGG+TGG	-	chr4_3:225892-225911	Msa0623050:CDS	40.0%
	ATTACGGAAAACATTGTGCC+TGG	-	chr4_3:226018-226037	Msa0623050:CDS	40.0%
!!	TGGTCCTTTTGGAAAACCAA+CGG	-	chr4_3:226038-226057	Msa0623050:CDS	40.0%
	TGATGATCATGTTCATGACC+AGG	+	chr4_3:226213-226232	None:intergenic	40.0%
	GATTTGAAGGAATGAGGTGG+TGG	+	chr4_3:225649-225668	None:intergenic	45.0%
	GGAGATTTGAAGGAATGAGG+TGG	+	chr4_3:225652-225671	None:intergenic	45.0%
	GGTGGAGATTTGAAGGAATG+AGG	+	chr4_3:225655-225674	None:intergenic	45.0%
!	GAAAATGGATGAGATGGTGG+TGG	+	chr4_3:225739-225758	None:intergenic	45.0%
	GGAGAAAATGGATGAGATGG+TGG	+	chr4_3:225742-225761	None:intergenic	45.0%
	GGAGGAGAAAATGGATGAGA+TGG	+	chr4_3:225745-225764	None:intergenic	45.0%
	ACAATGACAGTAGGGTGGTA+TGG	+	chr4_3:225871-225890	None:intergenic	45.0%
	CAATGACAATGACAGTAGGG+TGG	+	chr4_3:225876-225895	None:intergenic	45.0%
	AAAAGCAAGCATGGCTAGCA+AGG	+	chr4_3:225923-225942	None:intergenic	45.0%
!	AACATTGTGCCTGGTCCTTT+TGG	-	chr4_3:226027-226046	Msa0623050:CDS	45.0%
!!!	GTTGGTTTTCCAAAAGGACC+AGG	+	chr4_3:226039-226058	None:intergenic	45.0%
!!	TCCTTTTGGAAAACCAACGG+TGG	-	chr4_3:226041-226060	Msa0623050:CDS	45.0%
!!!	ACCACCGTTGGTTTTCCAAA+AGG	+	chr4_3:226045-226064	None:intergenic	45.0%
!!	TTTTGGAAAACCAACGGTGG+TGG	-	chr4_3:226044-226063	Msa0623050:CDS	45.0%
	GTGGCAAATACTACTTCTCC+TGG	-	chr4_3:226192-226211	Msa0623050:CDS	45.0%
!	CAAGGCTTGTTCTCAGTTTG+TGG	+	chr4_3:226246-226265	None:intergenic	45.0%
	GATTTGAAGGAATGAGGTGG+TGG	+	chr4_3:225649-225668	None:intergenic	45.0%
	GGAGATTTGAAGGAATGAGG+TGG	+	chr4_3:225652-225671	None:intergenic	45.0%
	GGTGGAGATTTGAAGGAATG+AGG	+	chr4_3:225655-225674	None:intergenic	45.0%
!	GAAAATGGATGAGATGGTGG+TGG	+	chr4_3:225739-225758	None:intergenic	45.0%
	GGAGAAAATGGATGAGATGG+TGG	+	chr4_3:225742-225761	None:intergenic	45.0%
	GGAGGAGAAAATGGATGAGA+TGG	+	chr4_3:225745-225764	None:intergenic	45.0%
	ACAATGACAGTAGGGTGGTA+TGG	+	chr4_3:225871-225890	None:intergenic	45.0%
	CAATGACAATGACAGTAGGG+TGG	+	chr4_3:225876-225895	None:intergenic	45.0%
	AAAAGCAAGCATGGCTAGCA+AGG	+	chr4_3:225923-225942	None:intergenic	45.0%
!	AACATTGTGCCTGGTCCTTT+TGG	-	chr4_3:226027-226046	Msa0623050:CDS	45.0%
!!!	GTTGGTTTTCCAAAAGGACC+AGG	+	chr4_3:226039-226058	None:intergenic	45.0%
!!	TCCTTTTGGAAAACCAACGG+TGG	-	chr4_3:226041-226060	Msa0623050:CDS	45.0%
!!!	ACCACCGTTGGTTTTCCAAA+AGG	+	chr4_3:226045-226064	None:intergenic	45.0%
!!	TTTTGGAAAACCAACGGTGG+TGG	-	chr4_3:226044-226063	Msa0623050:CDS	45.0%
	GTGGCAAATACTACTTCTCC+TGG	-	chr4_3:226192-226211	Msa0623050:CDS	45.0%
!	CAAGGCTTGTTCTCAGTTTG+TGG	+	chr4_3:226246-226265	None:intergenic	45.0%
!!	AGGTGATGGAGGAGGATTGA+GGG	+	chr4_3:225578-225597	None:intergenic	50.0%
!!	AAGGTGATGGAGGAGGATTG+AGG	+	chr4_3:225579-225598	None:intergenic	50.0%
!!	AGGTGATGGTGGAGGATTGA+GGG	+	chr4_3:225608-225627	None:intergenic	50.0%
!!	AAGGTGATGGTGGAGGATTG+AGG	+	chr4_3:225609-225628	None:intergenic	50.0%
!	AAAGGGTGGAAAGGTGATGG+TGG	+	chr4_3:225619-225638	None:intergenic	50.0%
	GGAGGGTTAAAAGGGTGGAA+AGG	+	chr4_3:225628-225647	None:intergenic	50.0%
!!	GAGGTGGTGGAGGGTTAAAA+GGG	+	chr4_3:225636-225655	None:intergenic	50.0%
!!	TGAGGTGGTGGAGGGTTAAA+AGG	+	chr4_3:225637-225656	None:intergenic	50.0%
!!	TGAAGGAATGAGGTGGTGGA+GGG	+	chr4_3:225645-225664	None:intergenic	50.0%
!	TTGAAGGAATGAGGTGGTGG+AGG	+	chr4_3:225646-225665	None:intergenic	50.0%
!!	TGCAGGTGGTGGAGATTTGA+AGG	+	chr4_3:225662-225681	None:intergenic	50.0%
	GGGAATGAATGAGATGGTGC+TGG	+	chr4_3:225685-225704	None:intergenic	50.0%
	GGAGGAGGGAATGAATGAGA+TGG	+	chr4_3:225691-225710	None:intergenic	50.0%
!!	AATGGATGAGATGGTGGTGG+TGG	+	chr4_3:225736-225755	None:intergenic	50.0%
!!	TGTGGTGGTGGAGGAGAAAA+TGG	+	chr4_3:225754-225773	None:intergenic	50.0%
	ACAGTAGGGTGGTATGGAGA+GGG	+	chr4_3:225865-225884	None:intergenic	50.0%
	TCAACTGTAACCACCACCGT+TGG	+	chr4_3:226057-226076	None:intergenic	50.0%
!!	AGGTGATGGAGGAGGATTGA+GGG	+	chr4_3:225578-225597	None:intergenic	50.0%
!!	AAGGTGATGGAGGAGGATTG+AGG	+	chr4_3:225579-225598	None:intergenic	50.0%
!!	AGGTGATGGTGGAGGATTGA+GGG	+	chr4_3:225608-225627	None:intergenic	50.0%
!!	AAGGTGATGGTGGAGGATTG+AGG	+	chr4_3:225609-225628	None:intergenic	50.0%
!	AAAGGGTGGAAAGGTGATGG+TGG	+	chr4_3:225619-225638	None:intergenic	50.0%
	GGAGGGTTAAAAGGGTGGAA+AGG	+	chr4_3:225628-225647	None:intergenic	50.0%
!!	GAGGTGGTGGAGGGTTAAAA+GGG	+	chr4_3:225636-225655	None:intergenic	50.0%
!!	TGAGGTGGTGGAGGGTTAAA+AGG	+	chr4_3:225637-225656	None:intergenic	50.0%
!!	TGAAGGAATGAGGTGGTGGA+GGG	+	chr4_3:225645-225664	None:intergenic	50.0%
!	TTGAAGGAATGAGGTGGTGG+AGG	+	chr4_3:225646-225665	None:intergenic	50.0%
!!	TGCAGGTGGTGGAGATTTGA+AGG	+	chr4_3:225662-225681	None:intergenic	50.0%
	GGGAATGAATGAGATGGTGC+TGG	+	chr4_3:225685-225704	None:intergenic	50.0%
	GGAGGAGGGAATGAATGAGA+TGG	+	chr4_3:225691-225710	None:intergenic	50.0%
!!	AATGGATGAGATGGTGGTGG+TGG	+	chr4_3:225736-225755	None:intergenic	50.0%
!!	TGTGGTGGTGGAGGAGAAAA+TGG	+	chr4_3:225754-225773	None:intergenic	50.0%
	ACAGTAGGGTGGTATGGAGA+GGG	+	chr4_3:225865-225884	None:intergenic	50.0%
	TCAACTGTAACCACCACCGT+TGG	+	chr4_3:226057-226076	None:intergenic	50.0%
!	GTGATGGAGGAGGATTGAGG+GGG	+	chr4_3:225576-225595	None:intergenic	55.0%
!!	GGTGATGGAGGAGGATTGAG+GGG	+	chr4_3:225577-225596	None:intergenic	55.0%
	TTGAGGGGGTGGAAAGGTGA+TGG	+	chr4_3:225592-225611	None:intergenic	55.0%
!!	GTGATGGTGGAGGATTGAGG+GGG	+	chr4_3:225606-225625	None:intergenic	55.0%
!!	GGTGATGGTGGAGGATTGAG+GGG	+	chr4_3:225607-225626	None:intergenic	55.0%
!	GTGGTGGAGGGTTAAAAGGG+TGG	+	chr4_3:225633-225652	None:intergenic	55.0%
!!	GAATGAGATGGTGCTGGTGC+AGG	+	chr4_3:225679-225698	None:intergenic	55.0%
!!	GATGAGATGGTGGTGGTGGA+GGG	+	chr4_3:225732-225751	None:intergenic	55.0%
	ATCGGGTGATGTGGAGATGG+CGG	+	chr4_3:225787-225806	None:intergenic	55.0%
	GCAATCGGGTGATGTGGAGA+TGG	+	chr4_3:225790-225809	None:intergenic	55.0%
	GACAGTAGGGTGGTATGGAG+AGG	+	chr4_3:225866-225885	None:intergenic	55.0%
!	GTGATGGAGGAGGATTGAGG+GGG	+	chr4_3:225576-225595	None:intergenic	55.0%
!!	GGTGATGGAGGAGGATTGAG+GGG	+	chr4_3:225577-225596	None:intergenic	55.0%
	TTGAGGGGGTGGAAAGGTGA+TGG	+	chr4_3:225592-225611	None:intergenic	55.0%
!!	GTGATGGTGGAGGATTGAGG+GGG	+	chr4_3:225606-225625	None:intergenic	55.0%
!!	GGTGATGGTGGAGGATTGAG+GGG	+	chr4_3:225607-225626	None:intergenic	55.0%
!	GTGGTGGAGGGTTAAAAGGG+TGG	+	chr4_3:225633-225652	None:intergenic	55.0%
!!	GAATGAGATGGTGCTGGTGC+AGG	+	chr4_3:225679-225698	None:intergenic	55.0%
!!	GATGAGATGGTGGTGGTGGA+GGG	+	chr4_3:225732-225751	None:intergenic	55.0%
	ATCGGGTGATGTGGAGATGG+CGG	+	chr4_3:225787-225806	None:intergenic	55.0%
	GCAATCGGGTGATGTGGAGA+TGG	+	chr4_3:225790-225809	None:intergenic	55.0%
	GACAGTAGGGTGGTATGGAG+AGG	+	chr4_3:225866-225885	None:intergenic	55.0%
!	GGTGGAGGGAGGTGTGGAAA+TGG	+	chr4_3:225544-225563	None:intergenic	60.0%
	TGGAGGAGGATTGAGGGGGT+GGG	+	chr4_3:225572-225591	None:intergenic	60.0%
	ATGGAGGAGGATTGAGGGGG+TGG	+	chr4_3:225573-225592	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGAGG+AGG	+	chr4_3:225586-225605	None:intergenic	60.0%
!	AGGGGGTGGAAAGGTGATGG+AGG	+	chr4_3:225589-225608	None:intergenic	60.0%
	GGAGGATTGAGGGGGTGGAA+AGG	+	chr4_3:225598-225617	None:intergenic	60.0%
!	ATGGTGGAGGATTGAGGGGG+TGG	+	chr4_3:225603-225622	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGTGG+AGG	+	chr4_3:225616-225635	None:intergenic	60.0%
!!	TGAGATGGTGCTGGTGCAGG+TGG	+	chr4_3:225676-225695	None:intergenic	60.0%
!!	GGATGAGATGGTGGTGGTGG+AGG	+	chr4_3:225733-225752	None:intergenic	60.0%
!!	GGATGCTTGTGTGGTGGTGG+AGG	+	chr4_3:225763-225782	None:intergenic	60.0%
	GGTGGATGCTTGTGTGGTGG+TGG	+	chr4_3:225766-225785	None:intergenic	60.0%
!	GATGGCGGTGGATGCTTGTG+TGG	+	chr4_3:225772-225791	None:intergenic	60.0%
	GGAGGAGCAATCGGGTGATG+TGG	+	chr4_3:225796-225815	None:intergenic	60.0%
!!	GAAGTGGTGGTGGTGGGGAT+GGG	+	chr4_3:225834-225853	None:intergenic	60.0%
!!	AGGGTGGAAGTGGTGGTGGT+GGG	+	chr4_3:225840-225859	None:intergenic	60.0%
	TGGTATGGAGAGGGAGAGGG+TGG	+	chr4_3:225856-225875	None:intergenic	60.0%
	GGGTGGTATGGAGAGGGAGA+GGG	+	chr4_3:225859-225878	None:intergenic	60.0%
	AGGGTGGTATGGAGAGGGAG+AGG	+	chr4_3:225860-225879	None:intergenic	60.0%
!	GGTGGAGGGAGGTGTGGAAA+TGG	+	chr4_3:225544-225563	None:intergenic	60.0%
	TGGAGGAGGATTGAGGGGGT+GGG	+	chr4_3:225572-225591	None:intergenic	60.0%
	ATGGAGGAGGATTGAGGGGG+TGG	+	chr4_3:225573-225592	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGAGG+AGG	+	chr4_3:225586-225605	None:intergenic	60.0%
!	AGGGGGTGGAAAGGTGATGG+AGG	+	chr4_3:225589-225608	None:intergenic	60.0%
	GGAGGATTGAGGGGGTGGAA+AGG	+	chr4_3:225598-225617	None:intergenic	60.0%
!	ATGGTGGAGGATTGAGGGGG+TGG	+	chr4_3:225603-225622	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGTGG+AGG	+	chr4_3:225616-225635	None:intergenic	60.0%
!!	TGAGATGGTGCTGGTGCAGG+TGG	+	chr4_3:225676-225695	None:intergenic	60.0%
!!	GGATGAGATGGTGGTGGTGG+AGG	+	chr4_3:225733-225752	None:intergenic	60.0%
!!	GGATGCTTGTGTGGTGGTGG+AGG	+	chr4_3:225763-225782	None:intergenic	60.0%
	GGTGGATGCTTGTGTGGTGG+TGG	+	chr4_3:225766-225785	None:intergenic	60.0%
!	GATGGCGGTGGATGCTTGTG+TGG	+	chr4_3:225772-225791	None:intergenic	60.0%
	GGAGGAGCAATCGGGTGATG+TGG	+	chr4_3:225796-225815	None:intergenic	60.0%
!!	GAAGTGGTGGTGGTGGGGAT+GGG	+	chr4_3:225834-225853	None:intergenic	60.0%
!!	AGGGTGGAAGTGGTGGTGGT+GGG	+	chr4_3:225840-225859	None:intergenic	60.0%
	TGGTATGGAGAGGGAGAGGG+TGG	+	chr4_3:225856-225875	None:intergenic	60.0%
	GGGTGGTATGGAGAGGGAGA+GGG	+	chr4_3:225859-225878	None:intergenic	60.0%
	AGGGTGGTATGGAGAGGGAG+AGG	+	chr4_3:225860-225879	None:intergenic	60.0%
!!	GAAGGTGGTGGAGGGAGGTG+TGG	+	chr4_3:225550-225569	None:intergenic	65.0%
	TTGAGGGGGTGGGAAGGTGG+TGG	+	chr4_3:225562-225581	None:intergenic	65.0%
	GGATTGAGGGGGTGGGAAGG+TGG	+	chr4_3:225565-225584	None:intergenic	65.0%
	GGAGGATTGAGGGGGTGGGA+AGG	+	chr4_3:225568-225587	None:intergenic	65.0%
!!	GATGGTGCTGGTGCAGGTGG+TGG	+	chr4_3:225673-225692	None:intergenic	65.0%
	TGCGTCGAGGAGGAGGAGGA+GGG	+	chr4_3:225705-225724	None:intergenic	65.0%
	TGTCTGCGTCGAGGAGGAGG+AGG	+	chr4_3:225709-225728	None:intergenic	65.0%
	GGCGGTGGATGCTTGTGTGG+TGG	+	chr4_3:225769-225788	None:intergenic	65.0%
!	GGGTGATGTGGAGATGGCGG+TGG	+	chr4_3:225784-225803	None:intergenic	65.0%
	TGCGGTGGGGGAGGAGCAAT+CGG	+	chr4_3:225805-225824	None:intergenic	65.0%
!!	GGAAGTGGTGGTGGTGGGGA+TGG	+	chr4_3:225835-225854	None:intergenic	65.0%
!!	GGGTGGAAGTGGTGGTGGTG+GGG	+	chr4_3:225839-225858	None:intergenic	65.0%
!!	GAGGGTGGAAGTGGTGGTGG+TGG	+	chr4_3:225841-225860	None:intergenic	65.0%
	GGAGAGGGTGGAAGTGGTGG+TGG	+	chr4_3:225844-225863	None:intergenic	65.0%
	GAGGGAGAGGGTGGAAGTGG+TGG	+	chr4_3:225847-225866	None:intergenic	65.0%
	GGAGAGGGAGAGGGTGGAAG+TGG	+	chr4_3:225850-225869	None:intergenic	65.0%
!!	GAAGGTGGTGGAGGGAGGTG+TGG	+	chr4_3:225550-225569	None:intergenic	65.0%
	TTGAGGGGGTGGGAAGGTGG+TGG	+	chr4_3:225562-225581	None:intergenic	65.0%
	GGATTGAGGGGGTGGGAAGG+TGG	+	chr4_3:225565-225584	None:intergenic	65.0%
	GGAGGATTGAGGGGGTGGGA+AGG	+	chr4_3:225568-225587	None:intergenic	65.0%
!!	GATGGTGCTGGTGCAGGTGG+TGG	+	chr4_3:225673-225692	None:intergenic	65.0%
	TGCGTCGAGGAGGAGGAGGA+GGG	+	chr4_3:225705-225724	None:intergenic	65.0%
	TGTCTGCGTCGAGGAGGAGG+AGG	+	chr4_3:225709-225728	None:intergenic	65.0%
	GGCGGTGGATGCTTGTGTGG+TGG	+	chr4_3:225769-225788	None:intergenic	65.0%
!	GGGTGATGTGGAGATGGCGG+TGG	+	chr4_3:225784-225803	None:intergenic	65.0%
	TGCGGTGGGGGAGGAGCAAT+CGG	+	chr4_3:225805-225824	None:intergenic	65.0%
!!	GGAAGTGGTGGTGGTGGGGA+TGG	+	chr4_3:225835-225854	None:intergenic	65.0%
!!	GGGTGGAAGTGGTGGTGGTG+GGG	+	chr4_3:225839-225858	None:intergenic	65.0%
!!	GAGGGTGGAAGTGGTGGTGG+TGG	+	chr4_3:225841-225860	None:intergenic	65.0%
	GGAGAGGGTGGAAGTGGTGG+TGG	+	chr4_3:225844-225863	None:intergenic	65.0%
	GAGGGAGAGGGTGGAAGTGG+TGG	+	chr4_3:225847-225866	None:intergenic	65.0%
	GGAGAGGGAGAGGGTGGAAG+TGG	+	chr4_3:225850-225869	None:intergenic	65.0%
!!	GGTGGGAAGGTGGTGGAGGG+AGG	+	chr4_3:225555-225574	None:intergenic	70.0%
!!	GGGGGTGGGAAGGTGGTGGA+GGG	+	chr4_3:225558-225577	None:intergenic	70.0%
!	AGGGGGTGGGAAGGTGGTGG+AGG	+	chr4_3:225559-225578	None:intergenic	70.0%
	CTGCGTCGAGGAGGAGGAGG+AGG	+	chr4_3:225706-225725	None:intergenic	70.0%
	GGGTGTCTGCGTCGAGGAGG+AGG	+	chr4_3:225712-225731	None:intergenic	70.0%
!!	GGAGGGTGTCTGCGTCGAGG+AGG	+	chr4_3:225715-225734	None:intergenic	70.0%
!!	GGTGGAGGGTGTCTGCGTCG+AGG	+	chr4_3:225718-225737	None:intergenic	70.0%
	GCGGTGGGGGAGGAGCAATC+GGG	+	chr4_3:225804-225823	None:intergenic	70.0%
!!	GTGGTGGTGGTGGGGATGGG+CGG	+	chr4_3:225831-225850	None:intergenic	70.0%
!!	GGTGGGAAGGTGGTGGAGGG+AGG	+	chr4_3:225555-225574	None:intergenic	70.0%
!!	GGGGGTGGGAAGGTGGTGGA+GGG	+	chr4_3:225558-225577	None:intergenic	70.0%
!	AGGGGGTGGGAAGGTGGTGG+AGG	+	chr4_3:225559-225578	None:intergenic	70.0%
	CTGCGTCGAGGAGGAGGAGG+AGG	+	chr4_3:225706-225725	None:intergenic	70.0%
	GGGTGTCTGCGTCGAGGAGG+AGG	+	chr4_3:225712-225731	None:intergenic	70.0%
!!	GGAGGGTGTCTGCGTCGAGG+AGG	+	chr4_3:225715-225734	None:intergenic	70.0%
!!	GGTGGAGGGTGTCTGCGTCG+AGG	+	chr4_3:225718-225737	None:intergenic	70.0%
	GCGGTGGGGGAGGAGCAATC+GGG	+	chr4_3:225804-225823	None:intergenic	70.0%
!!	GTGGTGGTGGTGGGGATGGG+CGG	+	chr4_3:225831-225850	None:intergenic	70.0%
	GATGGGCGGACGTGCGGTGG+GGG	+	chr4_3:225817-225836	None:intergenic	75.0%
	GGATGGGCGGACGTGCGGTG+GGG	+	chr4_3:225818-225837	None:intergenic	75.0%
	GGGATGGGCGGACGTGCGGT+GGG	+	chr4_3:225819-225838	None:intergenic	75.0%
	GGTGGGGATGGGCGGACGTG+CGG	+	chr4_3:225823-225842	None:intergenic	75.0%
	GATGGGCGGACGTGCGGTGG+GGG	+	chr4_3:225817-225836	None:intergenic	75.0%
	GGATGGGCGGACGTGCGGTG+GGG	+	chr4_3:225818-225837	None:intergenic	75.0%
	GGGATGGGCGGACGTGCGGT+GGG	+	chr4_3:225819-225838	None:intergenic	75.0%
	GGTGGGGATGGGCGGACGTG+CGG	+	chr4_3:225823-225842	None:intergenic	75.0%
!	GGGGATGGGCGGACGTGCGG+TGG	+	chr4_3:225820-225839	None:intergenic	80.0%
!	GGGGATGGGCGGACGTGCGG+TGG	+	chr4_3:225820-225839	None:intergenic	80.0%
!	GGGCGGACGTGCGGTGGGGG+AGG	+	chr4_3:225814-225833	None:intergenic	85.0%
!	GGGCGGACGTGCGGTGGGGG+AGG	+	chr4_3:225814-225833	None:intergenic	85.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	225511	226266	225511	ID=Msa0623050;Name=Msa0623050
chr4_3	mRNA	225511	226266	225511	ID=Msa0623050-mRNA-1;Parent=Msa0623050;Name=Msa0623050-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|251
chr4_3	exon	225511	226266	225511	ID=Msa0623050-mRNA-1:exon:56;Parent=Msa0623050-mRNA-1
chr4_3	CDS	225511	226266	225511	ID=Msa0623050-mRNA-1:cds;Parent=Msa0623050-mRNA-1

Gene Sequence

>Msa0623050

ATGGCCTTAAATCAACCAAATTTCTACTTTCCATTTCCACACCTCCCTCCACCACCTTCCCACCCCCTCAATCCTCCTCCATCACCTTTCCACCCCCTCAATCCTCCACCATCACCTTTCCACCCTTTTAACCCTCCACCACCTCATTCCTTCAAATCTCCACCACCTGCACCAGCACCATCTCATTCATTCCCTCCTCCTCCTCCTCGACGCAGACACCCTCCACCACCACCATCTCATCCATTTTCTCCTCCACCACCACACAAGCATCCACCGCCATCTCCACATCACCCGATTGCTCCTCCCCCACCGCACGTCCGCCCATCCCCACCACCACCACTTCCACCCTCTCCCTCTCCATACCACCCTACTGTCATTGTCATTGTCATCGTTGCATTTGGTGGCATTGCCTTGCTAGCCATGCTTGCTTTTGCATTATTTTGCTGCGTTCAAAAGAGGAAGAAGAAACAAGAAAGCGATGTCGTTCATATCGATGAACATAAAAAGATTACGGAAAACATTGTGCCTGGTCCTTTTGGAAAACCAACGGTGGTGGTTACAGTTGAAGATGATGTTCATATTGATGAAGTAATTAAGAAGAATGAAGAAGTTGGTCATGCTTTACATGCTGAAGCATCAAAAGTTGAATCAAATCAAGATAATGTTTCTAGTATCAATGAAGTGGCAAATACTACTTCTCCTGGTCATGAACATGATCATCATCATATTCAGCCACAAACTGAGAACAAGCCTTGA

Protein sequence

>Msa0623050

MALNQPNFYFPFPHLPPPPSHPLNPPPSPFHPLNPPPSPFHPFNPPPPHSFKSPPPAPAPSHSFPPPPPRRRHPPPPPSHPFSPPPPHKHPPPSPHHPIAPPPPHVRPSPPPPLPPSPSPYHPTVIVIVIVAFGGIALLAMLAFALFCCVQKRKKKQESDVVHIDEHKKITENIVPGPFGKPTVVVTVEDDVHIDEVIKKNEEVGHALHAEASKVESNQDNVSSINEVANTTSPGHEHDHHHIQPQTENKP*