AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087280 MtrunA17_Chr1g0204011 98.447 322 5 0 17 338 1 322 0.0 659
Msa0087280 MtrunA17_Chr5g0405991 56.051 314 135 2 25 338 6 316 3.07e-128 369
Msa0087280 MtrunA17_Chr8g0371381 56.081 296 128 1 43 338 26 319 5.01e-124 358
Msa0087280 MtrunA17_Chr1g0157051 51.899 316 149 2 24 337 3 317 9.74e-120 348
Msa0087280 MtrunA17_Chr1g0188431 47.651 298 145 3 43 338 39 327 2.13e-94 283
Msa0087280 MtrunA17_Chr3g0128061 47.785 316 160 4 28 338 11 326 4.87e-93 280
Msa0087280 MtrunA17_Chr6g0477071 44.590 305 158 3 36 338 47 342 6.23e-91 275
Msa0087280 MtrunA17_Chr7g0268501 44.586 314 165 6 30 338 11 320 5.51e-88 267
Msa0087280 MtrunA17_Chr7g0268521 44.586 314 165 6 30 338 11 320 5.51e-88 267
Msa0087280 MtrunA17_Chr4g0024121 42.368 321 180 4 23 338 6 326 8.92e-88 266
Msa0087280 MtrunA17_Chr5g0402571 42.271 317 177 4 26 338 12 326 1.62e-86 263
Msa0087280 MtrunA17_Chr4g0013721 45.364 302 162 3 39 338 96 396 2.01e-86 266
Msa0087280 MtrunA17_Chr4g0013821 44.224 303 166 3 38 338 23 324 6.56e-85 260
Msa0087280 MtrunA17_Chr2g0322861 43.125 320 175 6 24 338 69 386 1.26e-84 261
Msa0087280 MtrunA17_Chr1g0197411 42.547 322 176 6 26 338 9 330 1.29e-84 259
Msa0087280 MtrunA17_Chr3g0106921 39.752 322 180 5 24 338 6 320 6.45e-83 254
Msa0087280 MtrunA17_Chr5g0432331 44.828 319 159 10 29 338 42 352 3.21e-82 253
Msa0087280 MtrunA17_Chr5g0402581 40.379 317 183 4 26 338 12 326 7.81e-82 251
Msa0087280 MtrunA17_Chr1g0194151 43.713 334 178 8 14 338 1 333 7.97e-82 251
Msa0087280 MtrunA17_Chr3g0129051 41.033 329 180 6 17 338 1 322 9.86e-82 251
Msa0087280 MtrunA17_Chr2g0292271 42.453 318 175 5 28 338 14 330 1.51e-81 251
Msa0087280 MtrunA17_Chr5g0401431 42.424 330 175 9 21 337 1 328 2.02e-81 250
Msa0087280 MtrunA17_Chr5g0432351 44.828 319 159 10 29 338 11 321 2.50e-81 250
Msa0087280 MtrunA17_Chr8g0364291 40.952 315 180 4 30 338 10 324 3.35e-81 250
Msa0087280 MtrunA17_Chr1g0175561 39.812 319 181 7 30 338 9 326 4.55e-81 249
Msa0087280 MtrunA17_Chr2g0279041 41.824 318 175 4 28 338 11 325 6.97e-81 249
Msa0087280 MtrunA17_Chr4g0070951 39.942 343 178 9 6 338 5 329 7.37e-81 249
Msa0087280 MtrunA17_Chr4g0068621 44.850 301 159 6 43 338 38 336 8.67e-81 249
Msa0087280 MtrunA17_Chr5g0404721 42.715 302 166 5 43 338 30 330 2.42e-80 248
Msa0087280 MtrunA17_Chr5g0432341 44.201 319 161 10 29 338 11 321 8.53e-80 246
Msa0087280 MtrunA17_Chr2g0291751 41.640 317 179 4 28 338 14 330 1.44e-79 246
Msa0087280 MtrunA17_Chr6g0451571 43.750 320 168 7 29 338 17 334 1.58e-79 246
Msa0087280 MtrunA17_Chr2g0292211 42.587 317 176 4 28 338 25 341 2.24e-79 246
Msa0087280 MtrunA17_Chr3g0114451 42.157 306 166 4 37 338 20 318 5.19e-79 244
Msa0087280 MtrunA17_Chr2g0299691 43.182 308 160 8 42 338 55 358 9.76e-79 244
Msa0087280 MtrunA17_Chr8g0372601 42.904 303 164 7 43 338 30 330 1.46e-78 243
Msa0087280 MtrunA17_Chr7g0225221 42.006 319 173 7 26 338 8 320 1.53e-78 243
Msa0087280 MtrunA17_Chr4g0013181 43.478 299 156 6 46 338 62 353 3.59e-78 243
Msa0087280 MtrunA17_Chr1g0194271 42.522 341 179 7 14 338 1 340 6.69e-78 242
Msa0087280 MtrunA17_Chr2g0320071 39.752 322 179 5 25 338 3 317 1.75e-77 240
Msa0087280 MtrunA17_Chr2g0292091 40.461 304 175 4 41 338 22 325 2.80e-77 240
Msa0087280 MtrunA17_Chr7g0258811 40.063 317 181 6 30 338 56 371 3.26e-77 241
Msa0087280 MtrunA17_Chr4g0013171 42.904 303 158 8 43 338 27 321 4.09e-77 239
Msa0087280 MtrunA17_Chr6g0460711 39.809 314 181 5 28 338 6 314 6.61e-77 238
Msa0087280 MtrunA17_Chr2g0320091 40.557 323 176 6 25 338 3 318 1.13e-76 238
Msa0087280 MtrunA17_Chr1g0164891 45.183 301 155 8 47 338 93 392 1.22e-76 240
Msa0087280 MtrunA17_Chr1g0155611 44.371 302 162 5 43 338 46 347 2.17e-76 238
Msa0087280 MtrunA17_Chr2g0292241 42.157 306 171 4 39 338 25 330 4.56e-76 238
Msa0087280 MtrunA17_Chr5g0432441 39.450 327 181 7 21 338 8 326 4.71e-76 236
Msa0087280 MtrunA17_Chr3g0129041 42.121 330 175 7 17 338 1 322 5.36e-76 236
Msa0087280 MtrunA17_Chr3g0106901 40.061 327 185 4 16 338 4 323 5.46e-76 236
Msa0087280 MtrunA17_Chr2g0292251 42.020 307 170 5 39 338 24 329 5.78e-76 237
Msa0087280 MtrunA17_Chr5g0438021 40.683 322 171 7 29 338 12 325 1.52e-75 235
Msa0087280 MtrunA17_Chr7g0254201 41.368 307 165 6 38 338 15 312 2.75e-75 234
Msa0087280 MtrunA17_Chr5g0400331 42.947 319 165 9 34 338 16 331 2.76e-75 235
Msa0087280 MtrunA17_Chr2g0320101 39.441 322 180 5 25 338 3 317 2.83e-75 234
Msa0087280 MtrunA17_Chr2g0292181 42.157 306 171 4 39 338 34 339 3.07e-75 236
Msa0087280 MtrunA17_Chr1g0213061 42.188 320 170 7 26 338 10 321 3.49e-75 234
Msa0087280 MtrunA17_Chr2g0292111 39.432 317 186 4 28 338 14 330 4.16e-75 235
Msa0087280 MtrunA17_Chr1g0148021 41.640 317 177 5 29 338 13 328 5.58e-75 234
Msa0087280 MtrunA17_Chr3g0129061 41.824 318 168 7 29 338 14 322 9.82e-75 233
Msa0087280 MtrunA17_Chr7g0244461 39.938 323 178 6 21 338 1 312 1.14e-74 233
Msa0087280 MtrunA17_Chr4g0043391 40.308 325 176 7 26 338 6 324 1.34e-74 233
Msa0087280 MtrunA17_Chr4g0013201 40.728 302 168 4 41 338 44 338 2.19e-74 233
Msa0087280 MtrunA17_Chr3g0107881 41.231 325 175 9 23 338 7 324 5.10e-74 231
Msa0087280 MtrunA17_Chr4g0063671 38.941 321 183 5 28 338 3 320 5.80e-74 231
Msa0087280 MtrunA17_Chr2g0320061 39.441 322 180 8 24 338 5 318 8.42e-74 231
Msa0087280 MtrunA17_Chr4g0053871 42.222 315 164 8 28 334 16 320 1.47e-73 230
Msa0087280 MtrunA17_Chr2g0292151 40.063 317 184 4 28 338 14 330 2.10e-73 231
Msa0087280 MtrunA17_Chr7g0254231 40.000 300 170 3 41 338 20 311 3.30e-73 229
Msa0087280 MtrunA17_Chr4g0038171 39.441 322 179 7 25 338 8 321 3.37e-73 229
Msa0087280 MtrunA17_Chr2g0320031 38.602 329 185 7 17 338 1 319 3.73e-73 229
Msa0087280 MtrunA17_Chr4g0046131 39.735 302 173 5 42 334 41 342 4.53e-73 229
Msa0087280 MtrunA17_Chr2g0292101 40.789 304 174 4 41 338 23 326 2.47e-72 228
Msa0087280 MtrunA17_Chr2g0320051 39.441 322 180 8 24 338 5 318 4.30e-72 226
Msa0087280 MtrunA17_Chr2g0292261 39.542 306 179 4 39 338 25 330 1.30e-71 226
Msa0087280 MtrunA17_Chr4g0038161 40.062 322 175 7 28 338 6 320 3.18e-71 224
Msa0087280 MtrunA17_Chr7g0244451 38.413 315 181 5 29 338 10 316 1.46e-70 222
Msa0087280 MtrunA17_Chr4g0038151 40.196 306 168 7 41 338 23 321 2.05e-70 222
Msa0087280 MtrunA17_Chr4g0013191 40.924 303 169 6 41 338 43 340 4.47e-70 222
Msa0087280 MtrunA17_Chr5g0421411 42.553 282 149 8 68 338 6 285 5.24e-70 219
Msa0087280 MtrunA17_Chr2g0292291 40.584 308 174 6 39 338 26 332 6.11e-70 222
Msa0087280 MtrunA17_Chr4g0076211 40.678 295 166 3 47 338 45 333 1.13e-69 220
Msa0087280 MtrunA17_Chr7g0224371 40.741 297 162 7 47 338 35 322 3.16e-69 219
Msa0087280 MtrunA17_Chr4g0072091 40.461 304 171 5 42 338 23 323 4.51e-69 218
Msa0087280 MtrunA17_Chr4g0075241 36.280 328 195 8 19 338 6 327 1.32e-68 218
Msa0087280 MtrunA17_Chr3g0136751 40.264 303 173 4 41 338 23 322 1.91e-68 217
Msa0087280 MtrunA17_Chr2g0279061 44.186 258 135 3 87 338 12 266 8.08e-68 213
Msa0087280 MtrunA17_Chr2g0296621 38.926 298 166 5 47 338 54 341 4.50e-66 211
Msa0087280 MtrunA17_Chr2g0329641 36.795 337 197 7 13 338 4 335 4.78e-66 211
Msa0087280 MtrunA17_Chr6g0467161 34.604 341 197 7 16 338 4 336 6.41e-66 211
Msa0087280 MtrunA17_Chr6g0467121 38.390 323 174 7 30 338 52 363 8.22e-65 209
Msa0087280 MtrunA17_Chr2g0278671 37.013 308 182 6 39 338 20 323 7.71e-64 205
Msa0087280 MtrunA17_Chr2g0316481 36.000 350 186 7 20 334 56 402 3.14e-62 203
Msa0087280 MtrunA17_Chr5g0413051 36.013 311 190 6 37 338 67 377 1.73e-61 201
Msa0087280 MtrunA17_Chr2g0316831 35.429 350 188 7 20 334 92 438 4.48e-61 201
Msa0087280 MtrunA17_Chr2g0316791 35.143 350 189 7 20 334 56 402 9.05e-61 199
Msa0087280 MtrunA17_Chr2g0316191 34.473 351 191 7 20 334 56 403 6.71e-59 195
Msa0087280 MtrunA17_Chr4g0074851 34.462 325 202 4 20 338 9 328 3.65e-57 188
Msa0087280 MtrunA17_Chr1g0181511 34.754 305 188 4 40 338 24 323 3.72e-57 188
Msa0087280 MtrunA17_Chr5g0432401 36.364 319 147 8 28 337 14 285 6.89e-57 186
Msa0087280 MtrunA17_Chr6g0467251 36.000 300 181 4 43 338 36 328 1.16e-55 185
Msa0087280 MtrunA17_Chr2g0311251 33.631 336 179 7 41 337 9 339 1.68e-55 184
Msa0087280 MtrunA17_Chr1g0181431 34.211 304 189 4 41 338 25 323 2.35e-54 181
Msa0087280 MtrunA17_Chr1g0181481 34.098 305 190 4 40 338 24 323 3.07e-53 177
Msa0087280 MtrunA17_Chr2g0311241 30.563 373 182 6 41 337 58 429 2.40e-52 178
Msa0087280 MtrunA17_Chr4g0004591 32.075 318 154 5 43 337 77 355 7.07e-48 164
Msa0087280 MtrunA17_Chr2g0316811 33.730 252 146 5 20 253 30 278 3.95e-42 149
Msa0087280 MtrunA17_Chr2g0292281 40.183 219 114 6 126 338 9 216 2.96e-41 144
Msa0087280 MtrunA17_Chr3g0114461 38.000 200 112 6 143 338 1 192 5.55e-36 129
Msa0087280 MtrunA17_Chr2g0316141 33.101 287 137 8 89 338 11 279 6.02e-36 131
Msa0087280 MtrunA17_Chr2g0316181 33.101 287 137 8 89 338 11 279 6.02e-36 131
Msa0087280 MtrunA17_Chr3g0114491 49.541 109 54 1 42 149 17 125 4.78e-29 108
Msa0087280 MtrunA17_Chr5g0432321 40.323 124 65 3 163 285 17 132 3.46e-23 93.2
Msa0087280 MtrunA17_Chr6g0468731 58.571 70 26 1 82 151 22 88 2.23e-22 89.7
Msa0087280 MtrunA17_Chr1g0181501 30.729 192 121 5 153 338 4 189 1.44e-21 90.5
Msa0087280 MtrunA17_Chr3g0104101 38.194 144 76 6 205 338 9 149 5.80e-21 87.8
Msa0087280 MtrunA17_Chr7g0254181 45.631 103 54 1 105 207 22 122 1.47e-20 87.0
Msa0087280 MtrunA17_Chr1g0181491 37.607 117 72 1 35 151 4 119 2.53e-19 83.2
Msa0087280 MtrunA17_Chr7g0254171 47.222 72 38 0 88 159 3 74 3.50e-16 74.3
Msa0087280 MtrunA17_Chr2g0316771 30.114 176 91 3 191 334 7 182 6.66e-16 75.1
Msa0087280 MtrunA17_Chr1g0196191 53.030 66 31 0 85 150 27 92 1.01e-14 70.9
Msa0087280 MtrunA17_Chr4g0013811 43.243 74 41 1 152 224 5 78 1.47e-13 65.5
Msa0087280 MtrunA17_Chr7g0268491 42.500 80 41 3 262 338 20 97 3.47e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087280 AT5G51890.1 69.304 316 90 2 30 338 7 322 2.54e-165 464
Msa0087280 AT5G42180.1 55.696 316 137 2 24 337 2 316 2.34e-124 360
Msa0087280 AT4G33420.1 45.872 327 164 5 16 338 8 325 4.41e-92 278
Msa0087280 AT4G33420.2 45.872 327 164 5 16 338 55 372 2.14e-91 278
Msa0087280 AT3G01190.1 43.450 313 170 6 30 338 12 321 2.43e-88 268
Msa0087280 AT4G16270.1 47.279 294 152 3 48 338 55 348 4.16e-87 266
Msa0087280 AT5G19890.1 43.260 319 170 4 28 338 12 327 1.62e-86 264
Msa0087280 AT1G05260.1 44.737 304 162 5 40 338 23 325 3.67e-86 263
Msa0087280 AT5G15180.1 42.667 300 166 5 43 338 32 329 7.29e-85 259
Msa0087280 AT4G11290.1 43.711 318 171 6 28 338 10 326 1.27e-84 259
Msa0087280 AT4G36430.1 43.092 304 166 5 41 338 28 330 5.34e-84 257
Msa0087280 AT3G21770.1 43.189 301 165 5 39 334 25 324 1.10e-83 256
Msa0087280 AT5G06720.1 40.881 318 180 5 28 338 17 333 2.32e-83 256
Msa0087280 AT2G22420.1 42.271 317 178 4 26 338 4 319 6.55e-83 254
Msa0087280 AT5G14130.1 44.127 315 167 6 30 338 19 330 7.78e-83 254
Msa0087280 AT5G14130.2 44.127 315 167 6 30 338 60 371 3.38e-82 254
Msa0087280 AT5G06730.1 40.566 318 181 5 28 338 18 334 5.10e-82 253
Msa0087280 AT5G66390.1 42.991 321 170 7 30 338 14 333 1.02e-81 252
Msa0087280 AT4G17690.1 44.373 311 162 6 34 338 17 322 3.40e-81 250
Msa0087280 AT1G05240.1 42.953 298 162 5 43 334 26 321 4.23e-81 250
Msa0087280 AT1G05250.1 42.953 298 162 5 43 334 26 321 4.23e-81 250
Msa0087280 AT5G40150.1 43.648 307 160 6 39 338 28 328 2.06e-80 248
Msa0087280 AT2G18150.1 38.788 330 181 6 29 338 8 336 4.13e-80 248
Msa0087280 AT3G50990.1 42.188 320 177 6 26 338 23 341 6.57e-80 247
Msa0087280 AT5G17820.1 40.823 316 175 5 26 338 7 313 3.21e-79 244
Msa0087280 AT5G05340.1 41.830 306 163 6 40 338 27 324 9.81e-79 244
Msa0087280 AT5G17820.2 39.755 327 185 5 15 338 49 366 1.15e-78 245
Msa0087280 AT3G28200.1 41.830 306 166 5 39 338 17 316 1.60e-78 243
Msa0087280 AT1G71695.1 43.046 302 160 5 43 338 44 339 5.33e-78 243
Msa0087280 AT1G44970.1 42.434 304 169 5 41 338 43 346 5.62e-78 243
Msa0087280 AT3G03670.1 39.623 318 187 3 25 338 5 321 1.22e-77 241
Msa0087280 AT4G31760.1 39.623 318 178 5 29 338 15 326 1.33e-77 241
Msa0087280 AT3G49960.1 42.947 319 172 7 29 338 12 329 1.44e-77 241
Msa0087280 AT4G08770.1 42.949 312 166 6 37 338 18 327 5.56e-77 240
Msa0087280 AT2G18140.1 40.129 309 178 5 36 338 28 335 7.22e-77 239
Msa0087280 AT2G38380.1 42.532 308 168 6 39 338 27 333 8.59e-77 239
Msa0087280 AT5G64120.1 42.177 294 164 3 47 338 39 328 2.34e-76 238
Msa0087280 AT4G37530.1 41.558 308 173 4 38 338 22 329 2.97e-76 238
Msa0087280 AT4G08780.1 41.987 312 169 6 37 338 18 327 7.76e-76 237
Msa0087280 AT5G47000.1 41.049 324 178 6 24 338 11 330 9.84e-76 236
Msa0087280 AT3G32980.1 41.935 310 172 5 37 338 25 334 2.47e-75 236
Msa0087280 AT5G58390.1 40.439 319 174 7 28 338 6 316 2.68e-75 234
Msa0087280 AT2G38390.1 41.558 308 171 6 39 338 27 333 3.38e-75 235
Msa0087280 AT2G24800.1 43.092 304 164 5 41 338 29 329 4.57e-75 234
Msa0087280 AT4G26010.1 41.270 315 168 8 29 338 7 309 1.03e-74 233
Msa0087280 AT3G49120.1 42.581 310 170 5 37 338 26 335 1.13e-74 234
Msa0087280 AT4G26010.2 40.426 329 173 9 15 338 27 337 1.25e-74 234
Msa0087280 AT2G41480.1 40.312 320 178 7 28 338 13 328 1.54e-74 233
Msa0087280 AT2G18980.1 40.123 324 182 6 23 338 4 323 4.49e-74 232
Msa0087280 AT5G67400.1 43.042 309 165 7 39 338 23 329 6.38e-74 231
Msa0087280 AT1G68850.1 41.234 308 167 8 43 338 30 335 2.03e-73 230
Msa0087280 AT1G14550.1 40.938 320 173 8 28 338 9 321 2.67e-72 227
Msa0087280 AT3G49110.1 41.290 310 174 5 37 338 27 336 2.81e-72 228
Msa0087280 AT4G33870.1 37.313 335 172 5 38 334 63 397 3.43e-72 229
Msa0087280 AT5G19880.1 40.432 324 183 7 25 338 6 329 4.44e-72 227
Msa0087280 AT5G58400.1 39.130 322 178 8 26 338 13 325 4.59e-72 227
Msa0087280 AT2G34060.1 39.604 303 174 5 42 335 41 343 9.78e-72 226
Msa0087280 AT1G34510.1 40.397 302 164 6 41 338 20 309 4.36e-71 224
Msa0087280 AT4G37520.1 40.000 305 176 4 41 338 25 329 6.89e-71 224
Msa0087280 AT1G49570.1 40.066 302 172 6 41 334 46 346 1.01e-70 224
Msa0087280 AT1G14540.1 38.871 319 182 6 26 338 4 315 2.18e-70 222
Msa0087280 AT2G35380.1 40.728 302 169 6 47 338 34 335 8.40e-70 221
Msa0087280 AT5G39580.1 39.185 319 184 7 25 338 6 319 2.78e-69 219
Msa0087280 AT2G39040.1 40.777 309 172 7 40 338 43 350 3.04e-69 220
Msa0087280 AT4G30170.1 38.689 305 176 5 41 338 25 325 7.43e-69 218
Msa0087280 AT4G37520.2 39.672 305 174 5 41 338 25 326 4.39e-68 216
Msa0087280 AT1G30870.1 39.145 304 168 6 43 338 51 345 3.19e-67 215
Msa0087280 AT5G64110.1 39.815 324 177 8 28 338 12 330 8.55e-67 213
Msa0087280 AT1G24110.1 38.050 318 188 6 29 338 6 322 2.14e-66 212
Msa0087280 AT4G37530.2 42.912 261 144 3 38 293 22 282 3.50e-66 210
Msa0087280 AT5G64100.1 39.333 300 171 5 44 338 38 331 4.47e-66 211
Msa0087280 AT4G25980.1 35.535 318 194 5 29 338 12 326 1.95e-65 209
Msa0087280 AT5G22410.1 34.756 328 189 8 24 336 6 323 4.37e-64 206
Msa0087280 AT3G17070.1 35.948 306 182 7 43 338 38 339 5.13e-62 201
Msa0087280 AT1G77100.1 36.449 321 188 7 26 338 7 319 1.22e-60 197
Msa0087280 AT2G43480.1 35.144 313 190 6 35 338 27 335 2.99e-59 194
Msa0087280 AT4G21960.1 36.076 316 189 5 31 338 17 327 4.31e-58 191
Msa0087280 AT5G24070.1 34.524 336 194 8 24 338 5 335 1.10e-57 190
Msa0087280 AT2G37130.1 35.256 312 190 5 34 338 21 327 9.73e-56 184
Msa0087280 AT2G37130.2 35.333 300 182 5 46 338 2 296 5.54e-53 176
Msa0087280 AT2G35380.2 40.408 245 136 6 104 338 3 247 1.24e-48 164
Msa0087280 AT4G25980.2 38.785 214 113 3 34 231 62 273 3.81e-47 161
Msa0087280 AT3G17070.2 34.266 286 168 9 63 338 1 276 2.03e-46 159
Msa0087280 AT5G39580.2 41.667 192 108 2 25 215 6 194 2.22e-45 155
Msa0087280 AT2G24800.2 45.665 173 88 3 41 212 29 196 1.30e-42 148
Msa0087280 AT3G42570.1 35.238 105 66 1 104 206 43 147 5.11e-13 66.2

Find 96 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGTCGATTTAATATT+TGG 0.083993 1_2:-68185542 None:intergenic
AAAATACGGGCTGGGACTTT+TGG 0.229987 1_2:-68184028 None:intergenic
TCTGCATAGTCTTTAAGTTT+TGG 0.234346 1_2:-68185699 None:intergenic
AAAGATATGGTGACTTTATC+TGG 0.249055 1_2:+68184924 Msa0087280:CDS
CTCACATTGTTCTTCCTTTG+AGG 0.255401 1_2:+68184965 Msa0087280:CDS
TATTAAATGTTGACGGCCTT+CGG 0.260021 1_2:+68185626 Msa0087280:three_prime_UTR
CCAGGAACTGTCCTGCGTTT+TGG 0.289159 1_2:-68185088 None:intergenic
AAGTCTCACTTCTCCATTAT+CGG 0.305966 1_2:-68185303 None:intergenic
TTCAATTCTATGAATGATTA+CGG 0.317662 1_2:+68185654 Msa0087280:three_prime_UTR
AATGATCGAACTGAGATATT+AGG 0.321061 1_2:-68184259 None:intergenic
CCAAAACGCAGGACAGTTCC+TGG 0.338284 1_2:+68185088 Msa0087280:CDS
AGCTTTGCTAAGAGAGGGTT+GGG 0.350687 1_2:+68184897 Msa0087280:CDS
ATATTGTAAAGAAGAGTAAA+AGG 0.358935 1_2:-68183901 None:intergenic
CATTTACCATTCTTGATATG+AGG 0.364679 1_2:-68185470 None:intergenic
CCATATTGGAAAGTACTAAA+AGG 0.374080 1_2:+68184792 Msa0087280:CDS
ATTAAATGTTGACGGCCTTC+GGG 0.374838 1_2:+68185627 Msa0087280:three_prime_UTR
AATCTAAGAGGCTCCGATAA+TGG 0.377790 1_2:+68185290 Msa0087280:CDS
AGCTAAAGCAAAGCTTGAAT+TGG 0.379670 1_2:+68184297 Msa0087280:CDS
GACAGTCTGGAGGTCCATAT+TGG 0.388021 1_2:+68184778 Msa0087280:intron
GTCTTTCTCTGCTTGGTTAG+TGG 0.398136 1_2:-68184230 None:intergenic
CTATTACCTGGTTTATCAAA+TGG 0.400480 1_2:+68183847 Msa0087280:CDS
TGACCAAACATGTCCACAAT+TGG 0.401881 1_2:+68183961 Msa0087280:CDS
GTTGGCCTACATTCAAGGTT+GGG 0.404646 1_2:-68184866 None:intergenic
GAGAAGTGAGACTTAATTGC+AGG 0.404722 1_2:+68185312 Msa0087280:CDS
CTTCCATGACTGTTTCATAA+GGG 0.409975 1_2:+68184060 Msa0087280:CDS
TCTTCCATGACTGTTTCATA+AGG 0.417437 1_2:+68184059 Msa0087280:CDS
AGCCTTCTATTAAATGTTGA+CGG 0.419956 1_2:+68185619 Msa0087280:three_prime_UTR
AATGAGTTGGCCTACATTCA+AGG 0.421076 1_2:-68184871 None:intergenic
TCTTCCGACCAGTCACTTGT+TGG 0.422695 1_2:+68185176 Msa0087280:CDS
GGCCGTCAACATTTAATAGA+AGG 0.424088 1_2:-68185621 None:intergenic
GAGGGCCGTCTTTCTCTGCT+TGG 0.432126 1_2:-68184237 None:intergenic
TCAATTCTATGAATGATTAC+GGG 0.436272 1_2:+68185655 Msa0087280:three_prime_UTR
ATGGGCATGAAGTTCAGCTT+TGG 0.440243 1_2:-68183933 None:intergenic
GGAAGAACATCCTCAAAATA+CGG 0.446099 1_2:-68184042 None:intergenic
ACATGTTTGGTCATAGTAAT+GGG 0.452448 1_2:-68183951 None:intergenic
TGTCCAATTGTGGACATGTT+TGG 0.453516 1_2:-68183964 None:intergenic
ATGCGATGCATCAGTGTTGC+TGG 0.453989 1_2:+68184198 Msa0087280:CDS
CAAGGTTGGGGCTGGTAAGT+TGG 0.465173 1_2:-68184853 None:intergenic
TCAGCACAAGAAACAATGCC+TGG 0.469419 1_2:-68184325 None:intergenic
CCTACATTCAAGGTTGGGGC+TGG 0.480478 1_2:-68184861 None:intergenic
TTGGCCTACATTCAAGGTTG+GGG 0.486625 1_2:-68184865 None:intergenic
GAGCTTTGCTAAGAGAGGGT+TGG 0.490396 1_2:+68184896 Msa0087280:CDS
GAGAACTGTAAAATGAGGAT+TGG 0.494268 1_2:-68183821 None:intergenic
AACATCCTCAAAATACGGGC+TGG 0.495747 1_2:-68184037 None:intergenic
AAACAACTGCTAGCTGGAAA+AGG 0.497283 1_2:+68185146 Msa0087280:CDS
TATTACAAACAACTGCTAGC+TGG 0.500242 1_2:+68185140 Msa0087280:CDS
AGGGTTGGGAGTTAAAGATA+TGG 0.501982 1_2:+68184911 Msa0087280:CDS
TGTATACCTCATATCAAGAA+TGG 0.505829 1_2:+68185464 Msa0087280:three_prime_UTR
AAGCTTGAATTGGCTTGCCC+AGG 0.507178 1_2:+68184307 Msa0087280:CDS
GTACTAAAAGGACGGAAAGA+TGG 0.509250 1_2:+68184804 Msa0087280:CDS
AGTTGGCCTACATTCAAGGT+TGG 0.511821 1_2:-68184867 None:intergenic
TTTATCTGGAGGACACACTC+TGG 0.512594 1_2:+68184938 Msa0087280:CDS
AGCAAGAGATGTGGTTGCCA+TGG 0.519204 1_2:+68184363 Msa0087280:CDS
TTGGTGATTACAGAACTAGA+TGG 0.519606 1_2:+68185195 Msa0087280:CDS
TTCAGAGCTTTGCTAAGAGA+GGG 0.532283 1_2:+68184892 Msa0087280:CDS
GATCGAACTGAGATATTAGG+AGG 0.532320 1_2:-68184256 None:intergenic
ACAGTTCTCGAGCTATTACC+TGG 0.533419 1_2:+68183835 Msa0087280:CDS
TACATTTATTTCAACATGAG+TGG 0.534739 1_2:-68185433 None:intergenic
TTATCTGGAGGACACACTCT+GGG 0.536646 1_2:+68184939 Msa0087280:CDS
GGTTGGGGCTGGTAAGTTGG+CGG 0.537926 1_2:-68184850 None:intergenic
AGCTCGAGAACTGTAAAATG+AGG 0.542145 1_2:-68183826 None:intergenic
GACATGTTTGGTCATAGTAA+TGG 0.542302 1_2:-68183952 None:intergenic
GTAAAGAAGAGTAAAAGGAT+TGG 0.543816 1_2:-68183896 None:intergenic
TTGAAACTCGGAAATCTAAG+AGG 0.544657 1_2:+68185278 Msa0087280:CDS
ACACTGATGCTGTTGAGTCC+AGG 0.545026 1_2:-68185106 None:intergenic
GGACAAAATCATTTCAGAGA+CGG 0.552916 1_2:+68183982 Msa0087280:CDS
GAAGAGTAAAAGGATTGGAA+AGG 0.554000 1_2:-68183891 None:intergenic
TAGCAAAGCTCTGAATGAGT+TGG 0.558089 1_2:-68184884 None:intergenic
ATTCAGAGCTTTGCTAAGAG+AGG 0.558792 1_2:+68184891 Msa0087280:CDS
ATTATGTAGACGAGCCTCAA+AGG 0.566429 1_2:-68184979 None:intergenic
GAAGAACATCCTCAAAATAC+GGG 0.568324 1_2:-68184041 None:intergenic
TGTAATCACCAACAAGTGAC+TGG 0.570253 1_2:-68185184 None:intergenic
AATCATTCATAGAATTGAAG+TGG 0.574000 1_2:-68185650 None:intergenic
CCAGCCCCAACCTTGAATGT+AGG 0.575023 1_2:+68184861 Msa0087280:CDS
GCAGCTTCAATGTTGAAACT+CGG 0.579318 1_2:+68185266 Msa0087280:CDS
TAAAAGGACGGAAAGATGGA+AGG 0.581132 1_2:+68184808 Msa0087280:CDS
ACATCCTCAAAATACGGGCT+GGG 0.585381 1_2:-68184036 None:intergenic
CAAATTCAGTGTTCAACCGT+GGG 0.598938 1_2:-68185025 None:intergenic
AAAAGGACGGAAAGATGGAA+GGG 0.602051 1_2:+68184809 Msa0087280:CDS
ATTGGAAAGTACTAAAAGGA+CGG 0.617043 1_2:+68184796 Msa0087280:CDS
GAAAGATGGAAGGGTATCAA+AGG 0.620383 1_2:+68184818 Msa0087280:CDS
CAGCACAAGAAACAATGCCT+GGG 0.620896 1_2:-68184324 None:intergenic
CTGTTCATGACACTGACCCA+CGG 0.625549 1_2:+68185009 Msa0087280:CDS
TATTTGCTCTGACAGTCTGG+AGG 0.625944 1_2:+68184768 Msa0087280:intron
CCAAACAACAACCAAAACGC+AGG 0.627767 1_2:+68185077 Msa0087280:CDS
ATCACCAACAAGTGACTGGT+CGG 0.630373 1_2:-68185180 None:intergenic
ATACCCTTATGAAACAGTCA+TGG 0.637915 1_2:-68184063 None:intergenic
GAGGAGCCATTTGATAAACC+AGG 0.641043 1_2:-68183853 None:intergenic
GCAAATTCAGTGTTCAACCG+TGG 0.641287 1_2:-68185026 None:intergenic
ACTAACCAAGCAGAGAAAGA+CGG 0.648493 1_2:+68184232 Msa0087280:CDS
AATATCGTATATAATTGTAG+TGG 0.651415 1_2:-68185392 None:intergenic
AGAAGTGAGACTTAATTGCA+GGG 0.654415 1_2:+68185313 Msa0087280:CDS
ATAGAATTGAAGTGGCCCGA+AGG 0.657478 1_2:-68185642 None:intergenic
CATTTGTGCACAATAGCATG+AGG 0.660144 1_2:+68185502 Msa0087280:three_prime_UTR
ATCGAACTGAGATATTAGGA+GGG 0.667185 1_2:-68184255 None:intergenic
GATATGGTGACTTTATCTGG+AGG 0.710527 1_2:+68184927 Msa0087280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTGTAAAGAAGAGTAAA+AGG - chr1_2:68183904-68183923 None:intergenic 20.0%
!!! GTATAGTTTTTTTTACCAAT+GGG + chr1_2:68184138-68184157 Msa0087280:intron 20.0%
!! AATGATTAATGTTCAATGAT+AGG + chr1_2:68184174-68184193 Msa0087280:intron 20.0%
!! ATGATTAATGTTCAATGATA+GGG + chr1_2:68184175-68184194 Msa0087280:intron 20.0%
!! GATACAATTATTGGATAAAA+TGG - chr1_2:68184444-68184463 None:intergenic 20.0%
!! TAATACTCAGAAATTCAAAA+CGG + chr1_2:68184552-68184571 Msa0087280:intron 20.0%
!! TAGCTTAGATAAAATTTCTT+TGG - chr1_2:68184700-68184719 None:intergenic 20.0%
!! AATATCGTATATAATTGTAG+TGG - chr1_2:68185395-68185414 None:intergenic 20.0%
!!! TTTGATGTCGATTTAATATT+TGG - chr1_2:68185545-68185564 None:intergenic 20.0%
!!! TTCTTTCATTTTCTTATCAA+GGG + chr1_2:68185580-68185599 Msa0087280:three_prime_UTR 20.0%
!! TTCAATTCTATGAATGATTA+CGG + chr1_2:68185654-68185673 Msa0087280:three_prime_UTR 20.0%
!! ATATTGTAAAGAAGAGTAAA+AGG - chr1_2:68183904-68183923 None:intergenic 20.0%
!!! GTATAGTTTTTTTTACCAAT+GGG + chr1_2:68184138-68184157 Msa0087280:intron 20.0%
!! AATGATTAATGTTCAATGAT+AGG + chr1_2:68184174-68184193 Msa0087280:intron 20.0%
!! ATGATTAATGTTCAATGATA+GGG + chr1_2:68184175-68184194 Msa0087280:intron 20.0%
!! GATACAATTATTGGATAAAA+TGG - chr1_2:68184444-68184463 None:intergenic 20.0%
!! TAATACTCAGAAATTCAAAA+CGG + chr1_2:68184552-68184571 Msa0087280:intron 20.0%
!! TAGCTTAGATAAAATTTCTT+TGG - chr1_2:68184700-68184719 None:intergenic 20.0%
!! AATATCGTATATAATTGTAG+TGG - chr1_2:68185395-68185414 None:intergenic 20.0%
!!! TTTGATGTCGATTTAATATT+TGG - chr1_2:68185545-68185564 None:intergenic 20.0%
!!! TTCTTTCATTTTCTTATCAA+GGG + chr1_2:68185580-68185599 Msa0087280:three_prime_UTR 20.0%
!! TTCAATTCTATGAATGATTA+CGG + chr1_2:68185654-68185673 Msa0087280:three_prime_UTR 20.0%
!!! CGTATAGTTTTTTTTACCAA+TGG + chr1_2:68184137-68184156 Msa0087280:intron 25.0%
!!! AGAAGTATCAAAATTTTAGC+AGG - chr1_2:68184415-68184434 None:intergenic 25.0%
!!! GCTAAAATTTTGATACTTCT+AGG + chr1_2:68184415-68184434 Msa0087280:intron 25.0%
! ATCTAAGCTATTTAGTATAC+TGG + chr1_2:68184710-68184729 Msa0087280:intron 25.0%
! TCTAAGCTATTTAGTATACT+GGG + chr1_2:68184711-68184730 Msa0087280:intron 25.0%
! TACATTTATTTCAACATGAG+TGG - chr1_2:68185436-68185455 None:intergenic 25.0%
!! CTTCTTTCATTTTCTTATCA+AGG + chr1_2:68185579-68185598 Msa0087280:three_prime_UTR 25.0%
! AATCATTCATAGAATTGAAG+TGG - chr1_2:68185653-68185672 None:intergenic 25.0%
! TCAATTCTATGAATGATTAC+GGG + chr1_2:68185655-68185674 Msa0087280:three_prime_UTR 25.0%
!!! CGTATAGTTTTTTTTACCAA+TGG + chr1_2:68184137-68184156 Msa0087280:intron 25.0%
!!! AGAAGTATCAAAATTTTAGC+AGG - chr1_2:68184415-68184434 None:intergenic 25.0%
!!! GCTAAAATTTTGATACTTCT+AGG + chr1_2:68184415-68184434 Msa0087280:intron 25.0%
! ATCTAAGCTATTTAGTATAC+TGG + chr1_2:68184710-68184729 Msa0087280:intron 25.0%
! TCTAAGCTATTTAGTATACT+GGG + chr1_2:68184711-68184730 Msa0087280:intron 25.0%
! TACATTTATTTCAACATGAG+TGG - chr1_2:68185436-68185455 None:intergenic 25.0%
!! CTTCTTTCATTTTCTTATCA+AGG + chr1_2:68185579-68185598 Msa0087280:three_prime_UTR 25.0%
! AATCATTCATAGAATTGAAG+TGG - chr1_2:68185653-68185672 None:intergenic 25.0%
! TCAATTCTATGAATGATTAC+GGG + chr1_2:68185655-68185674 Msa0087280:three_prime_UTR 25.0%
CTATTACCTGGTTTATCAAA+TGG + chr1_2:68183847-68183866 Msa0087280:CDS 30.0%
GTAAAGAAGAGTAAAAGGAT+TGG - chr1_2:68183899-68183918 None:intergenic 30.0%
ACATGTTTGGTCATAGTAAT+GGG - chr1_2:68183954-68183973 None:intergenic 30.0%
! GAAATGATTTTGTCCAATTG+TGG - chr1_2:68183977-68183996 None:intergenic 30.0%
TTAGAAGATTACAAACCCAT+TGG - chr1_2:68184156-68184175 None:intergenic 30.0%
AATGATCGAACTGAGATATT+AGG - chr1_2:68184262-68184281 None:intergenic 30.0%
GTCTTAGATAGATATTACCA+TGG - chr1_2:68184383-68184402 None:intergenic 30.0%
GGCATATAGGATACAATTAT+TGG - chr1_2:68184453-68184472 None:intergenic 30.0%
CATACATATCTACTCTACAT+AGG - chr1_2:68184474-68184493 None:intergenic 30.0%
CTATGTAGAGTAGATATGTA+TGG + chr1_2:68184472-68184491 Msa0087280:intron 30.0%
! CCTTTTAGTACTTTCCAATA+TGG - chr1_2:68184795-68184814 None:intergenic 30.0%
!! CCATATTGGAAAGTACTAAA+AGG + chr1_2:68184792-68184811 Msa0087280:CDS 30.0%
!! ATTGGAAAGTACTAAAAGGA+CGG + chr1_2:68184796-68184815 Msa0087280:CDS 30.0%
AAAGATATGGTGACTTTATC+TGG + chr1_2:68184924-68184943 Msa0087280:CDS 30.0%
!!! GTTTTGGGCACTTATTTTTT+AGG - chr1_2:68185058-68185077 None:intergenic 30.0%
!!! TTTGGTTGTTGTTTGGTTTT+GGG - chr1_2:68185073-68185092 None:intergenic 30.0%
!!! TTTTGGTTGTTGTTTGGTTT+TGG - chr1_2:68185074-68185093 None:intergenic 30.0%
GCAAAGACAAAAAACAATCA+CGG - chr1_2:68185371-68185390 None:intergenic 30.0%
TGTATACCTCATATCAAGAA+TGG + chr1_2:68185464-68185483 Msa0087280:three_prime_UTR 30.0%
CATTTACCATTCTTGATATG+AGG - chr1_2:68185473-68185492 None:intergenic 30.0%
AGCCTTCTATTAAATGTTGA+CGG + chr1_2:68185619-68185638 Msa0087280:three_prime_UTR 30.0%
CTATTACCTGGTTTATCAAA+TGG + chr1_2:68183847-68183866 Msa0087280:CDS 30.0%
GTAAAGAAGAGTAAAAGGAT+TGG - chr1_2:68183899-68183918 None:intergenic 30.0%
ACATGTTTGGTCATAGTAAT+GGG - chr1_2:68183954-68183973 None:intergenic 30.0%
! GAAATGATTTTGTCCAATTG+TGG - chr1_2:68183977-68183996 None:intergenic 30.0%
TTAGAAGATTACAAACCCAT+TGG - chr1_2:68184156-68184175 None:intergenic 30.0%
AATGATCGAACTGAGATATT+AGG - chr1_2:68184262-68184281 None:intergenic 30.0%
GTCTTAGATAGATATTACCA+TGG - chr1_2:68184383-68184402 None:intergenic 30.0%
GGCATATAGGATACAATTAT+TGG - chr1_2:68184453-68184472 None:intergenic 30.0%
CATACATATCTACTCTACAT+AGG - chr1_2:68184474-68184493 None:intergenic 30.0%
CTATGTAGAGTAGATATGTA+TGG + chr1_2:68184472-68184491 Msa0087280:intron 30.0%
! CCTTTTAGTACTTTCCAATA+TGG - chr1_2:68184795-68184814 None:intergenic 30.0%
!! CCATATTGGAAAGTACTAAA+AGG + chr1_2:68184792-68184811 Msa0087280:CDS 30.0%
!! ATTGGAAAGTACTAAAAGGA+CGG + chr1_2:68184796-68184815 Msa0087280:CDS 30.0%
AAAGATATGGTGACTTTATC+TGG + chr1_2:68184924-68184943 Msa0087280:CDS 30.0%
!!! GTTTTGGGCACTTATTTTTT+AGG - chr1_2:68185058-68185077 None:intergenic 30.0%
!!! TTTGGTTGTTGTTTGGTTTT+GGG - chr1_2:68185073-68185092 None:intergenic 30.0%
!!! TTTTGGTTGTTGTTTGGTTT+TGG - chr1_2:68185074-68185093 None:intergenic 30.0%
GCAAAGACAAAAAACAATCA+CGG - chr1_2:68185371-68185390 None:intergenic 30.0%
TGTATACCTCATATCAAGAA+TGG + chr1_2:68185464-68185483 Msa0087280:three_prime_UTR 30.0%
CATTTACCATTCTTGATATG+AGG - chr1_2:68185473-68185492 None:intergenic 30.0%
AGCCTTCTATTAAATGTTGA+CGG + chr1_2:68185619-68185638 Msa0087280:three_prime_UTR 30.0%
GAGAACTGTAAAATGAGGAT+TGG - chr1_2:68183824-68183843 None:intergenic 35.0%
GAAGAGTAAAAGGATTGGAA+AGG - chr1_2:68183894-68183913 None:intergenic 35.0%
GACATGTTTGGTCATAGTAA+TGG - chr1_2:68183955-68183974 None:intergenic 35.0%
GGACAAAATCATTTCAGAGA+CGG + chr1_2:68183982-68184001 Msa0087280:CDS 35.0%
GAAGAACATCCTCAAAATAC+GGG - chr1_2:68184044-68184063 None:intergenic 35.0%
GGAAGAACATCCTCAAAATA+CGG - chr1_2:68184045-68184064 None:intergenic 35.0%
TCTTCCATGACTGTTTCATA+AGG + chr1_2:68184059-68184078 Msa0087280:CDS 35.0%
CTTCCATGACTGTTTCATAA+GGG + chr1_2:68184060-68184079 Msa0087280:CDS 35.0%
ATACCCTTATGAAACAGTCA+TGG - chr1_2:68184066-68184085 None:intergenic 35.0%
ATCGAACTGAGATATTAGGA+GGG - chr1_2:68184258-68184277 None:intergenic 35.0%
AGCTAAAGCAAAGCTTGAAT+TGG + chr1_2:68184297-68184316 Msa0087280:CDS 35.0%
TCTACTCTACATAGGCATAT+AGG - chr1_2:68184466-68184485 None:intergenic 35.0%
TATTACAAACAACTGCTAGC+TGG + chr1_2:68185140-68185159 Msa0087280:CDS 35.0%
! TTGGTGATTACAGAACTAGA+TGG + chr1_2:68185195-68185214 Msa0087280:CDS 35.0%
TTGAAACTCGGAAATCTAAG+AGG + chr1_2:68185278-68185297 Msa0087280:CDS 35.0%
AAGTCTCACTTCTCCATTAT+CGG - chr1_2:68185306-68185325 None:intergenic 35.0%
AGAAGTGAGACTTAATTGCA+GGG + chr1_2:68185313-68185332 Msa0087280:CDS 35.0%
TATTAAATGTTGACGGCCTT+CGG + chr1_2:68185626-68185645 Msa0087280:three_prime_UTR 35.0%
GAGAACTGTAAAATGAGGAT+TGG - chr1_2:68183824-68183843 None:intergenic 35.0%
GAAGAGTAAAAGGATTGGAA+AGG - chr1_2:68183894-68183913 None:intergenic 35.0%
GACATGTTTGGTCATAGTAA+TGG - chr1_2:68183955-68183974 None:intergenic 35.0%
GGACAAAATCATTTCAGAGA+CGG + chr1_2:68183982-68184001 Msa0087280:CDS 35.0%
GAAGAACATCCTCAAAATAC+GGG - chr1_2:68184044-68184063 None:intergenic 35.0%
GGAAGAACATCCTCAAAATA+CGG - chr1_2:68184045-68184064 None:intergenic 35.0%
TCTTCCATGACTGTTTCATA+AGG + chr1_2:68184059-68184078 Msa0087280:CDS 35.0%
CTTCCATGACTGTTTCATAA+GGG + chr1_2:68184060-68184079 Msa0087280:CDS 35.0%
ATACCCTTATGAAACAGTCA+TGG - chr1_2:68184066-68184085 None:intergenic 35.0%
ATCGAACTGAGATATTAGGA+GGG - chr1_2:68184258-68184277 None:intergenic 35.0%
AGCTAAAGCAAAGCTTGAAT+TGG + chr1_2:68184297-68184316 Msa0087280:CDS 35.0%
TCTACTCTACATAGGCATAT+AGG - chr1_2:68184466-68184485 None:intergenic 35.0%
TATTACAAACAACTGCTAGC+TGG + chr1_2:68185140-68185159 Msa0087280:CDS 35.0%
! TTGGTGATTACAGAACTAGA+TGG + chr1_2:68185195-68185214 Msa0087280:CDS 35.0%
TTGAAACTCGGAAATCTAAG+AGG + chr1_2:68185278-68185297 Msa0087280:CDS 35.0%
AAGTCTCACTTCTCCATTAT+CGG - chr1_2:68185306-68185325 None:intergenic 35.0%
AGAAGTGAGACTTAATTGCA+GGG + chr1_2:68185313-68185332 Msa0087280:CDS 35.0%
TATTAAATGTTGACGGCCTT+CGG + chr1_2:68185626-68185645 Msa0087280:three_prime_UTR 35.0%
AGCTCGAGAACTGTAAAATG+AGG - chr1_2:68183829-68183848 None:intergenic 40.0%
TGACCAAACATGTCCACAAT+TGG + chr1_2:68183961-68183980 Msa0087280:CDS 40.0%
TGTCCAATTGTGGACATGTT+TGG - chr1_2:68183967-68183986 None:intergenic 40.0%
!! TTTTGGGTCATGGATAGAAG+CGG - chr1_2:68184014-68184033 None:intergenic 40.0%
ACTAACCAAGCAGAGAAAGA+CGG + chr1_2:68184232-68184251 Msa0087280:CDS 40.0%
GATCGAACTGAGATATTAGG+AGG - chr1_2:68184259-68184278 None:intergenic 40.0%
! TGCTCTTTTAGCAAGAGATG+TGG + chr1_2:68184354-68184373 Msa0087280:CDS 40.0%
GTACTAAAAGGACGGAAAGA+TGG + chr1_2:68184804-68184823 Msa0087280:CDS 40.0%
TAAAAGGACGGAAAGATGGA+AGG + chr1_2:68184808-68184827 Msa0087280:CDS 40.0%
AAAAGGACGGAAAGATGGAA+GGG + chr1_2:68184809-68184828 Msa0087280:CDS 40.0%
!! GAAAGATGGAAGGGTATCAA+AGG + chr1_2:68184818-68184837 Msa0087280:CDS 40.0%
! AATGAGTTGGCCTACATTCA+AGG - chr1_2:68184874-68184893 None:intergenic 40.0%
!! TAGCAAAGCTCTGAATGAGT+TGG - chr1_2:68184887-68184906 None:intergenic 40.0%
ATTCAGAGCTTTGCTAAGAG+AGG + chr1_2:68184891-68184910 Msa0087280:CDS 40.0%
TTCAGAGCTTTGCTAAGAGA+GGG + chr1_2:68184892-68184911 Msa0087280:CDS 40.0%
AGGGTTGGGAGTTAAAGATA+TGG + chr1_2:68184911-68184930 Msa0087280:CDS 40.0%
GATATGGTGACTTTATCTGG+AGG + chr1_2:68184927-68184946 Msa0087280:CDS 40.0%
CTCACATTGTTCTTCCTTTG+AGG + chr1_2:68184965-68184984 Msa0087280:CDS 40.0%
ATTATGTAGACGAGCCTCAA+AGG - chr1_2:68184982-68185001 None:intergenic 40.0%
CAAATTCAGTGTTCAACCGT+GGG - chr1_2:68185028-68185047 None:intergenic 40.0%
AAACAACTGCTAGCTGGAAA+AGG + chr1_2:68185146-68185165 Msa0087280:CDS 40.0%
TGTAATCACCAACAAGTGAC+TGG - chr1_2:68185187-68185206 None:intergenic 40.0%
GCAGCTTCAATGTTGAAACT+CGG + chr1_2:68185266-68185285 Msa0087280:CDS 40.0%
AATCTAAGAGGCTCCGATAA+TGG + chr1_2:68185290-68185309 Msa0087280:CDS 40.0%
GAGAAGTGAGACTTAATTGC+AGG + chr1_2:68185312-68185331 Msa0087280:CDS 40.0%
CATTTGTGCACAATAGCATG+AGG + chr1_2:68185502-68185521 Msa0087280:three_prime_UTR 40.0%
GGCCGTCAACATTTAATAGA+AGG - chr1_2:68185624-68185643 None:intergenic 40.0%
ATTAAATGTTGACGGCCTTC+GGG + chr1_2:68185627-68185646 Msa0087280:three_prime_UTR 40.0%
AGCTCGAGAACTGTAAAATG+AGG - chr1_2:68183829-68183848 None:intergenic 40.0%
TGACCAAACATGTCCACAAT+TGG + chr1_2:68183961-68183980 Msa0087280:CDS 40.0%
TGTCCAATTGTGGACATGTT+TGG - chr1_2:68183967-68183986 None:intergenic 40.0%
!! TTTTGGGTCATGGATAGAAG+CGG - chr1_2:68184014-68184033 None:intergenic 40.0%
ACTAACCAAGCAGAGAAAGA+CGG + chr1_2:68184232-68184251 Msa0087280:CDS 40.0%
GATCGAACTGAGATATTAGG+AGG - chr1_2:68184259-68184278 None:intergenic 40.0%
! TGCTCTTTTAGCAAGAGATG+TGG + chr1_2:68184354-68184373 Msa0087280:CDS 40.0%
GTACTAAAAGGACGGAAAGA+TGG + chr1_2:68184804-68184823 Msa0087280:CDS 40.0%
TAAAAGGACGGAAAGATGGA+AGG + chr1_2:68184808-68184827 Msa0087280:CDS 40.0%
AAAAGGACGGAAAGATGGAA+GGG + chr1_2:68184809-68184828 Msa0087280:CDS 40.0%
!! GAAAGATGGAAGGGTATCAA+AGG + chr1_2:68184818-68184837 Msa0087280:CDS 40.0%
! AATGAGTTGGCCTACATTCA+AGG - chr1_2:68184874-68184893 None:intergenic 40.0%
!! TAGCAAAGCTCTGAATGAGT+TGG - chr1_2:68184887-68184906 None:intergenic 40.0%
ATTCAGAGCTTTGCTAAGAG+AGG + chr1_2:68184891-68184910 Msa0087280:CDS 40.0%
TTCAGAGCTTTGCTAAGAGA+GGG + chr1_2:68184892-68184911 Msa0087280:CDS 40.0%
AGGGTTGGGAGTTAAAGATA+TGG + chr1_2:68184911-68184930 Msa0087280:CDS 40.0%
GATATGGTGACTTTATCTGG+AGG + chr1_2:68184927-68184946 Msa0087280:CDS 40.0%
CTCACATTGTTCTTCCTTTG+AGG + chr1_2:68184965-68184984 Msa0087280:CDS 40.0%
ATTATGTAGACGAGCCTCAA+AGG - chr1_2:68184982-68185001 None:intergenic 40.0%
CAAATTCAGTGTTCAACCGT+GGG - chr1_2:68185028-68185047 None:intergenic 40.0%
AAACAACTGCTAGCTGGAAA+AGG + chr1_2:68185146-68185165 Msa0087280:CDS 40.0%
TGTAATCACCAACAAGTGAC+TGG - chr1_2:68185187-68185206 None:intergenic 40.0%
GCAGCTTCAATGTTGAAACT+CGG + chr1_2:68185266-68185285 Msa0087280:CDS 40.0%
AATCTAAGAGGCTCCGATAA+TGG + chr1_2:68185290-68185309 Msa0087280:CDS 40.0%
GAGAAGTGAGACTTAATTGC+AGG + chr1_2:68185312-68185331 Msa0087280:CDS 40.0%
CATTTGTGCACAATAGCATG+AGG + chr1_2:68185502-68185521 Msa0087280:three_prime_UTR 40.0%
GGCCGTCAACATTTAATAGA+AGG - chr1_2:68185624-68185643 None:intergenic 40.0%
ATTAAATGTTGACGGCCTTC+GGG + chr1_2:68185627-68185646 Msa0087280:three_prime_UTR 40.0%
ACAGTTCTCGAGCTATTACC+TGG + chr1_2:68183835-68183854 Msa0087280:CDS 45.0%
GAGGAGCCATTTGATAAACC+AGG - chr1_2:68183856-68183875 None:intergenic 45.0%
!! AAGGTGTTTTGTGCTAGCAG+AGG - chr1_2:68183875-68183894 None:intergenic 45.0%
ATGGGCATGAAGTTCAGCTT+TGG - chr1_2:68183936-68183955 None:intergenic 45.0%
!!! AAATACGGGCTGGGACTTTT+GGG - chr1_2:68184030-68184049 None:intergenic 45.0%
!!! AAAATACGGGCTGGGACTTT+TGG - chr1_2:68184031-68184050 None:intergenic 45.0%
ACATCCTCAAAATACGGGCT+GGG - chr1_2:68184039-68184058 None:intergenic 45.0%
AACATCCTCAAAATACGGGC+TGG - chr1_2:68184040-68184059 None:intergenic 45.0%
GTCTTTCTCTGCTTGGTTAG+TGG - chr1_2:68184233-68184252 None:intergenic 45.0%
CAGCACAAGAAACAATGCCT+GGG - chr1_2:68184327-68184346 None:intergenic 45.0%
TCAGCACAAGAAACAATGCC+TGG - chr1_2:68184328-68184347 None:intergenic 45.0%
CCAGACTGTCAGAGCAAATA+GGG - chr1_2:68184768-68184787 None:intergenic 45.0%
TCCAGACTGTCAGAGCAAAT+AGG - chr1_2:68184769-68184788 None:intergenic 45.0%
TATTTGCTCTGACAGTCTGG+AGG + chr1_2:68184768-68184787 Msa0087280:intron 45.0%
TTGGCCTACATTCAAGGTTG+GGG - chr1_2:68184868-68184887 None:intergenic 45.0%
! GTTGGCCTACATTCAAGGTT+GGG - chr1_2:68184869-68184888 None:intergenic 45.0%
! AGTTGGCCTACATTCAAGGT+TGG - chr1_2:68184870-68184889 None:intergenic 45.0%
AGCTTTGCTAAGAGAGGGTT+GGG + chr1_2:68184897-68184916 Msa0087280:CDS 45.0%
TTTATCTGGAGGACACACTC+TGG + chr1_2:68184938-68184957 Msa0087280:CDS 45.0%
TTATCTGGAGGACACACTCT+GGG + chr1_2:68184939-68184958 Msa0087280:CDS 45.0%
GCAAATTCAGTGTTCAACCG+TGG - chr1_2:68185029-68185048 None:intergenic 45.0%
!!! CCTGCGTTTTGGTTGTTGTT+TGG - chr1_2:68185080-68185099 None:intergenic 45.0%
CCAAACAACAACCAAAACGC+AGG + chr1_2:68185077-68185096 Msa0087280:CDS 45.0%
ATCACCAACAAGTGACTGGT+CGG - chr1_2:68185183-68185202 None:intergenic 45.0%
ATAGAATTGAAGTGGCCCGA+AGG - chr1_2:68185645-68185664 None:intergenic 45.0%
ACAGTTCTCGAGCTATTACC+TGG + chr1_2:68183835-68183854 Msa0087280:CDS 45.0%
GAGGAGCCATTTGATAAACC+AGG - chr1_2:68183856-68183875 None:intergenic 45.0%
!! AAGGTGTTTTGTGCTAGCAG+AGG - chr1_2:68183875-68183894 None:intergenic 45.0%
ATGGGCATGAAGTTCAGCTT+TGG - chr1_2:68183936-68183955 None:intergenic 45.0%
!!! AAATACGGGCTGGGACTTTT+GGG - chr1_2:68184030-68184049 None:intergenic 45.0%
!!! AAAATACGGGCTGGGACTTT+TGG - chr1_2:68184031-68184050 None:intergenic 45.0%
ACATCCTCAAAATACGGGCT+GGG - chr1_2:68184039-68184058 None:intergenic 45.0%
AACATCCTCAAAATACGGGC+TGG - chr1_2:68184040-68184059 None:intergenic 45.0%
GTCTTTCTCTGCTTGGTTAG+TGG - chr1_2:68184233-68184252 None:intergenic 45.0%
CAGCACAAGAAACAATGCCT+GGG - chr1_2:68184327-68184346 None:intergenic 45.0%
TCAGCACAAGAAACAATGCC+TGG - chr1_2:68184328-68184347 None:intergenic 45.0%
CCAGACTGTCAGAGCAAATA+GGG - chr1_2:68184768-68184787 None:intergenic 45.0%
TCCAGACTGTCAGAGCAAAT+AGG - chr1_2:68184769-68184788 None:intergenic 45.0%
TATTTGCTCTGACAGTCTGG+AGG + chr1_2:68184768-68184787 Msa0087280:intron 45.0%
TTGGCCTACATTCAAGGTTG+GGG - chr1_2:68184868-68184887 None:intergenic 45.0%
! GTTGGCCTACATTCAAGGTT+GGG - chr1_2:68184869-68184888 None:intergenic 45.0%
! AGTTGGCCTACATTCAAGGT+TGG - chr1_2:68184870-68184889 None:intergenic 45.0%
AGCTTTGCTAAGAGAGGGTT+GGG + chr1_2:68184897-68184916 Msa0087280:CDS 45.0%
TTTATCTGGAGGACACACTC+TGG + chr1_2:68184938-68184957 Msa0087280:CDS 45.0%
TTATCTGGAGGACACACTCT+GGG + chr1_2:68184939-68184958 Msa0087280:CDS 45.0%
GCAAATTCAGTGTTCAACCG+TGG - chr1_2:68185029-68185048 None:intergenic 45.0%
!!! CCTGCGTTTTGGTTGTTGTT+TGG - chr1_2:68185080-68185099 None:intergenic 45.0%
CCAAACAACAACCAAAACGC+AGG + chr1_2:68185077-68185096 Msa0087280:CDS 45.0%
ATCACCAACAAGTGACTGGT+CGG - chr1_2:68185183-68185202 None:intergenic 45.0%
ATAGAATTGAAGTGGCCCGA+AGG - chr1_2:68185645-68185664 None:intergenic 45.0%
! AAGTCCCAGCCCGTATTTTG+AGG + chr1_2:68184032-68184051 Msa0087280:CDS 50.0%
ATGCGATGCATCAGTGTTGC+TGG + chr1_2:68184198-68184217 Msa0087280:CDS 50.0%
!! AAGCTTGAATTGGCTTGCCC+AGG + chr1_2:68184307-68184326 Msa0087280:CDS 50.0%
AGCAAGAGATGTGGTTGCCA+TGG + chr1_2:68184363-68184382 Msa0087280:CDS 50.0%
CCCTATTTGCTCTGACAGTC+TGG + chr1_2:68184765-68184784 Msa0087280:intron 50.0%
GACAGTCTGGAGGTCCATAT+TGG + chr1_2:68184778-68184797 Msa0087280:intron 50.0%
GAGCTTTGCTAAGAGAGGGT+TGG + chr1_2:68184896-68184915 Msa0087280:CDS 50.0%
CTGTTCATGACACTGACCCA+CGG + chr1_2:68185009-68185028 Msa0087280:CDS 50.0%
ACACTGATGCTGTTGAGTCC+AGG - chr1_2:68185109-68185128 None:intergenic 50.0%
TCTTCCGACCAGTCACTTGT+TGG + chr1_2:68185176-68185195 Msa0087280:CDS 50.0%
! AAGTCCCAGCCCGTATTTTG+AGG + chr1_2:68184032-68184051 Msa0087280:CDS 50.0%
ATGCGATGCATCAGTGTTGC+TGG + chr1_2:68184198-68184217 Msa0087280:CDS 50.0%
!! AAGCTTGAATTGGCTTGCCC+AGG + chr1_2:68184307-68184326 Msa0087280:CDS 50.0%
AGCAAGAGATGTGGTTGCCA+TGG + chr1_2:68184363-68184382 Msa0087280:CDS 50.0%
CCCTATTTGCTCTGACAGTC+TGG + chr1_2:68184765-68184784 Msa0087280:intron 50.0%
GACAGTCTGGAGGTCCATAT+TGG + chr1_2:68184778-68184797 Msa0087280:intron 50.0%
GAGCTTTGCTAAGAGAGGGT+TGG + chr1_2:68184896-68184915 Msa0087280:CDS 50.0%
CTGTTCATGACACTGACCCA+CGG + chr1_2:68185009-68185028 Msa0087280:CDS 50.0%
ACACTGATGCTGTTGAGTCC+AGG - chr1_2:68185109-68185128 None:intergenic 50.0%
TCTTCCGACCAGTCACTTGT+TGG + chr1_2:68185176-68185195 Msa0087280:CDS 50.0%
! CAAGGTTGGGGCTGGTAAGT+TGG - chr1_2:68184856-68184875 None:intergenic 55.0%
CCTACATTCAAGGTTGGGGC+TGG - chr1_2:68184864-68184883 None:intergenic 55.0%
CCAGCCCCAACCTTGAATGT+AGG + chr1_2:68184861-68184880 Msa0087280:CDS 55.0%
! CCAGGAACTGTCCTGCGTTT+TGG - chr1_2:68185091-68185110 None:intergenic 55.0%
CCAAAACGCAGGACAGTTCC+TGG + chr1_2:68185088-68185107 Msa0087280:CDS 55.0%
! CAAGGTTGGGGCTGGTAAGT+TGG - chr1_2:68184856-68184875 None:intergenic 55.0%
CCTACATTCAAGGTTGGGGC+TGG - chr1_2:68184864-68184883 None:intergenic 55.0%
CCAGCCCCAACCTTGAATGT+AGG + chr1_2:68184861-68184880 Msa0087280:CDS 55.0%
! CCAGGAACTGTCCTGCGTTT+TGG - chr1_2:68185091-68185110 None:intergenic 55.0%
CCAAAACGCAGGACAGTTCC+TGG + chr1_2:68185088-68185107 Msa0087280:CDS 55.0%
!! GGGCTGGGACTTTTGGGTCA+TGG - chr1_2:68184024-68184043 None:intergenic 60.0%
GAGGGCCGTCTTTCTCTGCT+TGG - chr1_2:68184240-68184259 None:intergenic 60.0%
! GGTTGGGGCTGGTAAGTTGG+CGG - chr1_2:68184853-68184872 None:intergenic 60.0%
!! GGGCTGGGACTTTTGGGTCA+TGG - chr1_2:68184024-68184043 None:intergenic 60.0%
GAGGGCCGTCTTTCTCTGCT+TGG - chr1_2:68184240-68184259 None:intergenic 60.0%
! GGTTGGGGCTGGTAAGTTGG+CGG - chr1_2:68184853-68184872 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 68183818 68185708 68183818 ID=Msa0087280;Name=Msa0087280
chr1_2 mRNA 68183818 68185708 68183818 ID=Msa0087280-mRNA-1;Parent=Msa0087280;Name=Msa0087280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|1|1|1|1|3|362|338
chr1_2 exon 68183818 68184081 68183818 ID=Msa0087280-mRNA-1:exon:23169;Parent=Msa0087280-mRNA-1
chr1_2 exon 68184196 68184384 68184196 ID=Msa0087280-mRNA-1:exon:23170;Parent=Msa0087280-mRNA-1
chr1_2 exon 68184783 68185708 68184783 ID=Msa0087280-mRNA-1:exon:23171;Parent=Msa0087280-mRNA-1
chr1_2 CDS 68183818 68184081 68183818 ID=Msa0087280-mRNA-1:cds;Parent=Msa0087280-mRNA-1
chr1_2 CDS 68184196 68184384 68184196 ID=Msa0087280-mRNA-1:cds;Parent=Msa0087280-mRNA-1
chr1_2 CDS 68184783 68185346 68184783 ID=Msa0087280-mRNA-1:cds;Parent=Msa0087280-mRNA-1
chr1_2 three_prime_UTR 68185347 68185708 68185347 ID=Msa0087280-mRNA-1:three_prime_utr;Parent=Msa0087280-mRNA-1
Gene Sequence

>Msa0087280

CATCCAATCCTCATTTTACAGTTCTCGAGCTATTACCTGGTTTATCAAATGGCTCCTCTGCTAGCACAAAACACCTTTCCAATCCTTTTACTCTTCTTTACAATATTTGCATTATCCAAAGCTGAACTTCATGCCCATTACTATGACCAAACATGTCCACAATTGGACAAAATCATTTCAGAGACGGTTCTAACCGCTTCTATCCATGACCCAAAAGTCCCAGCCCGTATTTTGAGGATGTTCTTCCATGACTGTTTCATAAGGGGATGCGATGCATCAGTGTTGCTGGATTCAACTGCCACTAACCAAGCAGAGAAAGACGGCCCTCCTAATATCTCAGTTCGATCATTCTATGTGATTGATGAAGCTAAAGCAAAGCTTGAATTGGCTTGCCCAGGCATTGTTTCTTGTGCTGATATACTTGCTCTTTTAGCAAGAGATGTGGTTGCCATGTCTGGAGGTCCATATTGGAAAGTACTAAAAGGACGGAAAGATGGAAGGGTATCAAAGGCATCTGATACCGCCAACTTACCAGCCCCAACCTTGAATGTAGGCCAACTCATTCAGAGCTTTGCTAAGAGAGGGTTGGGAGTTAAAGATATGGTGACTTTATCTGGAGGACACACTCTGGGTTTCTCACATTGTTCTTCCTTTGAGGCTCGTCTACATAATTTCAGTTCTGTTCATGACACTGACCCACGGTTGAACACTGAATTTGCACTAGACCTAAAAAATAAGTGCCCAAAACCAAACAACAACCAAAACGCAGGACAGTTCCTGGACTCAACAGCATCAGTGTTTGATAATGACTATTACAAACAACTGCTAGCTGGAAAAGGTGTGTTTTCTTCCGACCAGTCACTTGTTGGTGATTACAGAACTAGATGGATTGTTGAAGCATTTGCAAGAGATCAGAGTTTGTTTTTCAAAGAGTTTGCAGCTTCAATGTTGAAACTCGGAAATCTAAGAGGCTCCGATAATGGAGAAGTGAGACTTAATTGCAGGGCTGTGAATTGA
Protein sequence

>Msa0087280

HPILILQFSSYYLVYQMAPLLAQNTFPILLLFFTIFALSKAELHAHYYDQTCPQLDKIISETVLTASIHDPKVPARILRMFFHDCFIRGCDASVLLDSTATNQAEKDGPPNISVRSFYVIDEAKAKLELACPGIVSCADILALLARDVVAMSGGPYWKVLKGRKDGRVSKASDTANLPAPTLNVGQLIQSFAKRGLGVKDMVTLSGGHTLGFSHCSSFEARLHNFSSVHDTDPRLNTEFALDLKNKCPKPNNNQNAGQFLDSTASVFDNDYYKQLLAGKGVFSSDQSLVGDYRTRWIVEAFARDQSLFFKEFAASMLKLGNLRGSDNGEVRLNCRAVN*