AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133920 MtrunA17_Chr1g0204011 98.758 322 4 0 17 338 1 322 0.0 660
Msa0133920 MtrunA17_Chr5g0405991 56.051 314 135 2 25 338 6 316 1.06e-127 368
Msa0133920 MtrunA17_Chr8g0371381 56.419 296 127 1 43 338 26 319 1.51e-124 360
Msa0133920 MtrunA17_Chr1g0157051 52.258 310 147 1 28 337 9 317 1.05e-119 347
Msa0133920 MtrunA17_Chr1g0188431 47.651 298 145 3 43 338 39 327 4.66e-94 283
Msa0133920 MtrunA17_Chr3g0128061 47.785 316 160 4 28 338 11 326 9.05e-93 279
Msa0133920 MtrunA17_Chr6g0477071 43.478 322 166 4 24 338 30 342 8.35e-91 275
Msa0133920 MtrunA17_Chr7g0268501 45.079 315 163 6 28 338 12 320 4.84e-88 267
Msa0133920 MtrunA17_Chr7g0268521 45.079 315 163 6 28 338 12 320 4.84e-88 267
Msa0133920 MtrunA17_Chr4g0024121 42.368 321 180 4 23 338 6 326 2.20e-87 266
Msa0133920 MtrunA17_Chr4g0013721 45.724 304 162 3 37 338 94 396 2.61e-87 268
Msa0133920 MtrunA17_Chr5g0402571 41.433 321 182 4 24 338 6 326 3.38e-86 263
Msa0133920 MtrunA17_Chr4g0013821 44.554 303 165 3 38 338 23 324 1.67e-85 261
Msa0133920 MtrunA17_Chr1g0197411 42.857 322 175 6 26 338 9 330 4.61e-85 260
Msa0133920 MtrunA17_Chr2g0322861 42.812 320 176 6 24 338 69 386 6.68e-84 259
Msa0133920 MtrunA17_Chr5g0402581 39.875 321 187 4 24 338 6 326 6.05e-83 254
Msa0133920 MtrunA17_Chr1g0194151 44.012 334 177 8 14 338 1 333 3.57e-82 253
Msa0133920 MtrunA17_Chr3g0106921 39.752 322 180 5 24 338 6 320 4.20e-82 252
Msa0133920 MtrunA17_Chr5g0432331 45.253 316 156 10 32 338 45 352 8.68e-82 252
Msa0133920 MtrunA17_Chr4g0070951 41.796 323 173 8 26 338 12 329 1.24e-81 251
Msa0133920 MtrunA17_Chr2g0292271 42.453 318 175 5 28 338 14 330 2.25e-81 251
Msa0133920 MtrunA17_Chr5g0401431 42.424 330 175 9 21 337 1 328 2.56e-81 250
Msa0133920 MtrunA17_Chr5g0432351 45.031 322 158 11 28 338 8 321 4.39e-81 249
Msa0133920 MtrunA17_Chr4g0068621 44.300 307 164 6 37 338 32 336 1.05e-80 249
Msa0133920 MtrunA17_Chr3g0129051 41.033 329 180 6 17 338 1 322 1.33e-80 248
Msa0133920 MtrunA17_Chr2g0279041 40.741 324 177 5 26 338 6 325 1.35e-80 248
Msa0133920 MtrunA17_Chr8g0364291 40.635 315 181 4 30 338 10 324 1.66e-80 248
Msa0133920 MtrunA17_Chr1g0175561 38.838 327 191 6 20 338 1 326 1.90e-80 248
Msa0133920 MtrunA17_Chr6g0451571 44.062 320 167 7 29 338 17 334 3.79e-80 247
Msa0133920 MtrunA17_Chr5g0404721 42.715 302 166 5 43 338 30 330 4.84e-80 247
Msa0133920 MtrunA17_Chr2g0299691 42.769 325 166 9 30 338 38 358 7.54e-80 247
Msa0133920 MtrunA17_Chr5g0432341 44.410 322 160 11 28 338 8 321 1.45e-79 245
Msa0133920 MtrunA17_Chr2g0291751 41.640 317 179 4 28 338 14 330 1.68e-79 246
Msa0133920 MtrunA17_Chr2g0292211 42.587 317 176 4 28 338 25 341 2.22e-79 246
Msa0133920 MtrunA17_Chr8g0372601 43.234 303 163 7 43 338 30 330 2.85e-79 245
Msa0133920 MtrunA17_Chr3g0114451 41.250 320 170 5 30 338 6 318 6.24e-79 244
Msa0133920 MtrunA17_Chr2g0320071 40.062 322 178 5 25 338 3 317 9.65e-79 243
Msa0133920 MtrunA17_Chr1g0194271 42.815 341 178 7 14 338 1 340 2.64e-78 243
Msa0133920 MtrunA17_Chr7g0225221 42.006 319 173 7 26 338 8 320 5.14e-78 241
Msa0133920 MtrunA17_Chr4g0013181 43.478 299 156 6 46 338 62 353 6.50e-78 242
Msa0133920 MtrunA17_Chr2g0320091 40.867 323 175 6 25 338 3 318 8.12e-78 241
Msa0133920 MtrunA17_Chr2g0292091 38.941 321 190 4 24 338 5 325 1.17e-77 241
Msa0133920 MtrunA17_Chr7g0258811 40.000 330 179 8 27 338 43 371 5.18e-77 241
Msa0133920 MtrunA17_Chr4g0013171 42.904 303 158 8 43 338 27 321 7.42e-77 238
Msa0133920 MtrunA17_Chr1g0164891 45.183 301 155 8 47 338 93 392 7.51e-77 241
Msa0133920 MtrunA17_Chr2g0320101 39.752 322 179 5 25 338 3 317 1.78e-76 237
Msa0133920 MtrunA17_Chr1g0148021 41.956 317 176 5 29 338 13 328 1.81e-76 238
Msa0133920 MtrunA17_Chr2g0292241 42.157 306 171 4 39 338 25 330 2.74e-76 238
Msa0133920 MtrunA17_Chr2g0292251 42.020 307 170 5 39 338 24 329 3.71e-76 238
Msa0133920 MtrunA17_Chr5g0400331 43.260 319 164 9 34 338 16 331 3.91e-76 237
Msa0133920 MtrunA17_Chr5g0432441 40.625 320 172 8 28 338 16 326 4.32e-76 236
Msa0133920 MtrunA17_Chr1g0155611 44.371 302 162 5 43 338 46 347 4.71e-76 237
Msa0133920 MtrunA17_Chr7g0254201 41.694 307 164 6 38 338 15 312 7.94e-76 236
Msa0133920 MtrunA17_Chr6g0460711 39.490 314 182 5 28 338 6 314 1.35e-75 235
Msa0133920 MtrunA17_Chr2g0292181 42.157 306 171 4 39 338 34 339 1.85e-75 236
Msa0133920 MtrunA17_Chr3g0106901 40.061 327 185 4 16 338 4 323 2.23e-75 234
Msa0133920 MtrunA17_Chr2g0292111 40.523 306 176 4 39 338 25 330 3.21e-75 235
Msa0133920 MtrunA17_Chr3g0129041 42.121 330 175 7 17 338 1 322 4.71e-75 234
Msa0133920 MtrunA17_Chr2g0320061 39.506 324 178 8 25 338 3 318 6.36e-75 233
Msa0133920 MtrunA17_Chr5g0438021 40.683 322 171 7 29 338 12 325 7.85e-75 233
Msa0133920 MtrunA17_Chr1g0213061 41.875 320 171 7 26 338 10 321 7.92e-75 233
Msa0133920 MtrunA17_Chr7g0244461 39.938 323 178 6 21 338 1 312 1.13e-74 233
Msa0133920 MtrunA17_Chr4g0013201 40.584 308 172 4 35 338 38 338 2.16e-74 233
Msa0133920 MtrunA17_Chr3g0129061 41.824 318 168 7 29 338 14 322 6.50e-74 231
Msa0133920 MtrunA17_Chr3g0107881 41.231 325 175 9 23 338 7 324 7.69e-74 231
Msa0133920 MtrunA17_Chr7g0254231 40.333 300 169 3 41 338 20 311 8.63e-74 230
Msa0133920 MtrunA17_Chr4g0053871 42.951 305 160 7 41 337 25 323 8.78e-74 231
Msa0133920 MtrunA17_Chr4g0063671 39.748 317 180 5 30 338 7 320 1.11e-73 230
Msa0133920 MtrunA17_Chr4g0043391 40.000 325 177 7 26 338 6 324 1.87e-73 230
Msa0133920 MtrunA17_Chr2g0292151 41.176 306 174 4 39 338 25 330 2.90e-73 230
Msa0133920 MtrunA17_Chr2g0320031 38.272 324 183 6 25 338 3 319 5.62e-73 228
Msa0133920 MtrunA17_Chr4g0046131 39.735 302 173 5 42 334 41 342 5.68e-73 229
Msa0133920 MtrunA17_Chr2g0292101 40.789 304 174 4 41 338 23 326 2.03e-72 228
Msa0133920 MtrunA17_Chr4g0038171 40.000 310 172 6 37 338 18 321 2.40e-72 227
Msa0133920 MtrunA17_Chr2g0320051 39.198 324 179 8 25 338 3 318 2.64e-72 227
Msa0133920 MtrunA17_Chr2g0292261 39.542 306 179 4 39 338 25 330 1.13e-71 226
Msa0133920 MtrunA17_Chr4g0038161 39.623 318 177 6 29 338 10 320 1.50e-71 225
Msa0133920 MtrunA17_Chr5g0421411 42.553 282 149 8 68 338 6 285 3.95e-70 220
Msa0133920 MtrunA17_Chr2g0292291 40.584 308 174 6 39 338 26 332 4.42e-70 222
Msa0133920 MtrunA17_Chr7g0244451 39.683 315 176 6 29 338 11 316 4.88e-70 221
Msa0133920 MtrunA17_Chr4g0013191 40.924 303 169 6 41 338 43 340 6.45e-70 221
Msa0133920 MtrunA17_Chr4g0076211 40.678 295 166 3 47 338 45 333 1.17e-69 220
Msa0133920 MtrunA17_Chr4g0038151 39.869 306 169 7 41 338 23 321 1.17e-69 220
Msa0133920 MtrunA17_Chr7g0224371 40.741 297 162 7 47 338 35 322 1.77e-69 219
Msa0133920 MtrunA17_Chr4g0072091 40.667 300 168 5 42 334 23 319 5.02e-69 218
Msa0133920 MtrunA17_Chr3g0136751 39.185 319 182 5 29 338 7 322 1.60e-68 217
Msa0133920 MtrunA17_Chr4g0075241 36.280 328 195 8 19 338 6 327 6.88e-68 216
Msa0133920 MtrunA17_Chr2g0279061 43.798 258 136 3 87 338 12 266 4.76e-67 211
Msa0133920 MtrunA17_Chr2g0296621 38.926 298 166 5 47 338 54 341 3.37e-66 212
Msa0133920 MtrunA17_Chr6g0467161 34.604 341 197 7 16 338 4 336 1.01e-65 210
Msa0133920 MtrunA17_Chr2g0329641 36.795 337 197 7 13 338 4 335 1.08e-65 210
Msa0133920 MtrunA17_Chr6g0467121 38.820 322 172 7 31 338 53 363 5.19e-65 210
Msa0133920 MtrunA17_Chr2g0278671 36.688 308 183 6 39 338 20 323 4.13e-63 203
Msa0133920 MtrunA17_Chr2g0316481 36.000 350 186 7 20 334 56 402 3.32e-62 203
Msa0133920 MtrunA17_Chr2g0316831 35.429 350 188 7 20 334 92 438 4.88e-61 201
Msa0133920 MtrunA17_Chr5g0413051 36.364 308 187 6 40 338 70 377 7.48e-61 199
Msa0133920 MtrunA17_Chr2g0316791 35.143 350 189 7 20 334 56 402 1.26e-60 199
Msa0133920 MtrunA17_Chr2g0316191 34.473 351 191 7 20 334 56 403 6.43e-59 195
Msa0133920 MtrunA17_Chr5g0432401 37.037 324 142 9 29 337 9 285 1.19e-57 188
Msa0133920 MtrunA17_Chr1g0181511 34.754 305 188 4 40 338 24 323 2.56e-57 188
Msa0133920 MtrunA17_Chr4g0074851 34.921 315 193 5 31 338 19 328 2.85e-57 188
Msa0133920 MtrunA17_Chr2g0311251 35.015 337 174 10 41 337 9 340 1.72e-55 184
Msa0133920 MtrunA17_Chr6g0467251 34.139 331 198 5 17 334 1 324 3.35e-55 183
Msa0133920 MtrunA17_Chr1g0181431 34.211 304 189 4 41 338 25 323 2.42e-54 181
Msa0133920 MtrunA17_Chr1g0181481 34.098 305 190 4 40 338 24 323 3.14e-53 177
Msa0133920 MtrunA17_Chr2g0311241 30.933 375 181 7 41 338 58 431 2.16e-52 178
Msa0133920 MtrunA17_Chr4g0004591 32.075 318 154 5 43 337 77 355 1.26e-47 164
Msa0133920 MtrunA17_Chr2g0316811 33.730 252 146 5 20 253 30 278 4.21e-42 149
Msa0133920 MtrunA17_Chr2g0292281 40.758 211 108 6 134 338 17 216 2.04e-41 144
Msa0133920 MtrunA17_Chr2g0316141 33.101 287 137 8 89 338 11 279 2.98e-36 132
Msa0133920 MtrunA17_Chr2g0316181 33.101 287 137 8 89 338 11 279 2.98e-36 132
Msa0133920 MtrunA17_Chr3g0114461 38.000 200 112 6 143 338 1 192 9.23e-36 128
Msa0133920 MtrunA17_Chr3g0114491 49.541 109 54 1 42 149 17 125 5.47e-29 108
Msa0133920 MtrunA17_Chr5g0432321 40.323 124 65 3 163 285 17 132 3.50e-23 93.2
Msa0133920 MtrunA17_Chr6g0468731 58.571 70 26 1 82 151 22 88 4.19e-22 89.0
Msa0133920 MtrunA17_Chr1g0181501 30.729 192 121 5 153 338 4 189 1.07e-21 90.9
Msa0133920 MtrunA17_Chr3g0104101 38.194 144 76 6 205 338 9 149 3.93e-21 88.2
Msa0133920 MtrunA17_Chr7g0254181 45.631 103 54 1 105 207 22 122 1.95e-20 86.7
Msa0133920 MtrunA17_Chr1g0181491 37.607 117 72 1 35 151 4 119 1.97e-19 83.6
Msa0133920 MtrunA17_Chr7g0254171 47.222 72 38 0 88 159 3 74 3.57e-16 74.3
Msa0133920 MtrunA17_Chr2g0316771 30.114 176 91 3 191 334 7 182 6.86e-16 75.1
Msa0133920 MtrunA17_Chr1g0196191 53.030 66 31 0 85 150 27 92 1.01e-14 70.9
Msa0133920 MtrunA17_Chr4g0013811 43.243 74 41 1 152 224 5 78 1.44e-13 65.5
Msa0133920 MtrunA17_Chr7g0268491 43.750 80 40 3 262 338 20 97 1.01e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133920 AT5G51890.1 69.108 314 96 1 26 338 9 322 4.91e-166 466
Msa0133920 AT5G42180.1 55.380 316 138 2 24 337 2 316 1.08e-123 358
Msa0133920 AT4G33420.1 45.566 327 165 5 16 338 8 325 5.66e-91 275
Msa0133920 AT4G33420.2 45.566 327 165 5 16 338 55 372 2.28e-90 275
Msa0133920 AT3G01190.1 43.450 313 171 5 29 338 12 321 5.48e-88 267
Msa0133920 AT4G16270.1 47.279 294 152 3 48 338 55 348 2.72e-87 266
Msa0133920 AT1G05260.1 43.987 316 171 5 28 338 11 325 3.85e-87 265
Msa0133920 AT5G19890.1 43.260 319 167 4 31 338 12 327 6.12e-87 265
Msa0133920 AT5G15180.1 40.361 332 174 6 11 338 18 329 2.81e-85 261
Msa0133920 AT4G11290.1 43.711 318 171 6 28 338 10 326 6.23e-85 259
Msa0133920 AT3G21770.1 43.234 303 166 5 39 336 25 326 4.66e-84 258
Msa0133920 AT2G22420.1 42.902 317 176 4 26 338 4 319 5.91e-84 257
Msa0133920 AT4G36430.1 43.092 304 166 5 41 338 28 330 8.99e-84 257
Msa0133920 AT5G06720.1 40.881 318 180 5 28 338 17 333 1.56e-82 254
Msa0133920 AT5G06730.1 40.881 318 180 5 28 338 18 334 3.94e-82 253
Msa0133920 AT5G66390.1 43.791 306 165 6 39 338 29 333 1.50e-81 251
Msa0133920 AT5G14130.1 43.492 315 169 6 30 338 19 330 4.42e-81 250
Msa0133920 AT1G05240.1 42.715 302 165 5 43 338 26 325 4.81e-81 249
Msa0133920 AT1G05250.1 42.715 302 165 5 43 338 26 325 4.81e-81 249
Msa0133920 AT4G17690.1 44.373 311 162 6 34 338 17 322 7.49e-81 249
Msa0133920 AT5G14130.2 43.492 315 169 6 30 338 60 371 1.75e-80 250
Msa0133920 AT5G40150.1 43.322 307 161 6 39 338 28 328 1.25e-79 246
Msa0133920 AT3G50990.1 42.500 320 176 6 26 338 23 341 1.46e-79 246
Msa0133920 AT2G18150.1 40.656 305 174 5 40 338 33 336 2.44e-79 246
Msa0133920 AT5G05340.1 41.830 306 163 6 40 338 27 324 1.25e-78 243
Msa0133920 AT1G44970.1 42.763 304 168 5 41 338 43 346 1.59e-78 244
Msa0133920 AT5G17820.1 40.506 316 176 5 26 338 7 313 2.62e-78 242
Msa0133920 AT5G17820.2 39.450 327 186 5 15 338 49 366 7.19e-78 243
Msa0133920 AT3G28200.1 41.503 306 167 5 39 338 17 316 1.01e-77 241
Msa0133920 AT4G08770.1 43.269 312 165 6 37 338 18 327 1.41e-77 241
Msa0133920 AT2G38380.1 42.857 308 167 6 39 338 27 333 2.91e-77 241
Msa0133920 AT1G71695.1 42.715 302 161 5 43 338 44 339 4.52e-77 241
Msa0133920 AT4G08780.1 42.308 312 168 6 37 338 18 327 1.80e-76 239
Msa0133920 AT4G31760.1 39.308 318 179 5 29 338 15 326 1.86e-76 238
Msa0133920 AT3G49960.1 42.633 319 173 7 29 338 12 329 1.99e-76 238
Msa0133920 AT5G47000.1 41.562 320 174 6 24 334 11 326 2.87e-76 238
Msa0133920 AT2G18140.1 40.129 309 178 5 36 338 28 335 3.07e-76 238
Msa0133920 AT3G03670.1 38.994 318 189 3 25 338 5 321 3.15e-76 237
Msa0133920 AT4G26010.1 41.270 315 169 7 28 338 7 309 4.61e-76 236
Msa0133920 AT4G26010.2 40.549 328 174 8 15 338 27 337 5.92e-76 237
Msa0133920 AT2G38390.1 41.883 308 170 6 39 338 27 333 9.14e-76 237
Msa0133920 AT3G32980.1 42.258 310 171 5 37 338 25 334 9.16e-76 237
Msa0133920 AT4G37530.1 40.968 310 176 4 36 338 20 329 1.71e-75 236
Msa0133920 AT5G64120.1 41.837 294 165 3 47 338 39 328 1.75e-75 236
Msa0133920 AT3G49120.1 42.903 310 169 5 37 338 26 335 3.48e-75 236
Msa0133920 AT5G58390.1 40.439 319 174 7 28 338 6 316 8.26e-75 233
Msa0133920 AT1G68850.1 39.521 334 177 9 28 338 4 335 1.21e-74 234
Msa0133920 AT2G24800.1 42.763 304 165 5 41 338 29 329 2.72e-74 233
Msa0133920 AT2G41480.1 41.776 304 165 6 43 338 29 328 4.24e-74 232
Msa0133920 AT2G18980.1 40.123 324 182 6 23 338 4 323 9.35e-74 231
Msa0133920 AT5G67400.1 42.395 309 167 7 39 338 23 329 3.96e-73 229
Msa0133920 AT3G49110.1 41.613 310 173 5 37 338 27 336 6.64e-73 230
Msa0133920 AT1G14550.1 41.562 320 171 8 28 338 9 321 7.89e-73 228
Msa0133920 AT4G33870.1 36.919 344 178 6 30 334 54 397 1.69e-72 230
Msa0133920 AT2G34060.1 39.803 304 174 5 42 336 41 344 2.60e-72 228
Msa0133920 AT5G58400.1 38.820 322 179 8 26 338 13 325 2.45e-71 225
Msa0133920 AT5G19880.1 40.123 324 184 7 25 338 6 329 3.17e-71 224
Msa0133920 AT1G34510.1 39.172 314 175 6 29 338 8 309 9.29e-71 223
Msa0133920 AT1G49570.1 40.066 302 172 6 41 334 46 346 1.28e-70 224
Msa0133920 AT4G37520.1 39.672 305 177 4 41 338 25 329 4.26e-70 222
Msa0133920 AT2G35380.1 40.728 302 169 6 47 338 34 335 5.76e-70 221
Msa0133920 AT2G39040.1 40.777 309 172 7 40 338 43 350 1.40e-69 221
Msa0133920 AT1G14540.1 38.245 319 184 6 26 338 4 315 1.80e-69 219
Msa0133920 AT4G30170.1 38.689 305 176 5 41 338 25 325 1.50e-68 218
Msa0133920 AT5G39580.1 38.558 319 186 7 25 338 6 319 1.29e-67 215
Msa0133920 AT4G37520.2 39.344 305 175 5 41 338 25 326 2.71e-67 214
Msa0133920 AT1G30870.1 39.145 304 168 6 43 338 51 345 5.01e-67 214
Msa0133920 AT1G24110.1 37.975 316 189 5 29 338 8 322 6.34e-67 213
Msa0133920 AT4G37530.2 42.586 263 146 3 36 293 20 282 4.12e-66 210
Msa0133920 AT5G64110.1 41.275 298 164 7 47 338 38 330 2.62e-65 209
Msa0133920 AT5G64100.1 39.000 300 172 5 44 338 38 331 3.13e-65 209
Msa0133920 AT4G25980.1 35.220 318 195 5 29 338 12 326 2.12e-64 207
Msa0133920 AT5G22410.1 34.862 327 188 8 24 335 6 322 8.97e-64 206
Msa0133920 AT3G17070.1 35.948 306 182 7 43 338 38 339 1.25e-61 200
Msa0133920 AT1G77100.1 35.826 321 190 7 26 338 7 319 2.95e-59 193
Msa0133920 AT2G43480.1 35.599 309 186 6 39 338 31 335 8.35e-59 193
Msa0133920 AT4G21960.1 35.714 308 187 4 37 338 25 327 5.17e-58 191
Msa0133920 AT5G24070.1 34.821 336 193 8 24 338 5 335 7.46e-58 191
Msa0133920 AT2G37130.1 35.256 312 190 5 34 338 21 327 8.65e-56 185
Msa0133920 AT2G37130.2 35.333 300 182 5 46 338 2 296 4.87e-53 177
Msa0133920 AT2G35380.2 40.408 245 136 6 104 338 3 247 9.50e-49 164
Msa0133920 AT4G25980.2 38.785 214 113 3 34 231 62 273 6.85e-47 160
Msa0133920 AT3G17070.2 34.266 286 168 9 63 338 1 276 3.97e-46 158
Msa0133920 AT5G39580.2 41.146 192 109 2 25 215 6 194 1.52e-44 153
Msa0133920 AT2G24800.2 45.665 173 88 3 41 212 29 196 1.81e-42 147
Msa0133920 AT3G42570.1 35.238 105 66 1 104 206 43 147 5.58e-13 66.2

Find 97 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGTCGATTTAATATT+TGG 0.083993 1_3:+65297332 None:intergenic
TCTGCGTAGTCTTTAAGTTT+TGG 0.229493 1_3:+65297175 None:intergenic
AAAATACGGGCTGGGACTTT+TGG 0.229987 1_3:+65298906 None:intergenic
AAAGATATGGTGACTTTATC+TGG 0.249055 1_3:-65297950 Msa0133920:CDS
CTCACATTGTTCTTCCTTTG+AGG 0.255401 1_3:-65297909 Msa0133920:CDS
CCAGGAACTGTCCTGCGTTT+TGG 0.289159 1_3:+65297786 None:intergenic
AAGTCTCACTTCTCCATTAT+CGG 0.305966 1_3:+65297571 None:intergenic
TATTCCATGTTGACGACCTT+CGG 0.310999 1_3:-65297248 Msa0133920:three_prime_UTR
TTCAATTCTATGAATGATTA+CGG 0.317662 1_3:-65297220 Msa0133920:three_prime_UTR
AATGATCGAACTGAGATATT+AGG 0.321061 1_3:+65298677 None:intergenic
CCAAAACGCAGGACAGTTCC+TGG 0.338284 1_3:-65297786 Msa0133920:CDS
AGCTTTGCTAAGAGAGGGTT+GGG 0.350687 1_3:-65297977 Msa0133920:CDS
CATTTACCATTCTTGATATG+AGG 0.364679 1_3:+65297404 None:intergenic
CCATATTGGAAAGTACTAAA+AGG 0.374080 1_3:-65298082 Msa0133920:CDS
AATCTAAGAGGCTCCGATAA+TGG 0.377790 1_3:-65297584 Msa0133920:CDS
AGCTAAAGCAAAGCTTGAAT+TGG 0.379670 1_3:-65298639 Msa0133920:CDS
ATTCCATGTTGACGACCTTC+GGG 0.384542 1_3:-65297247 Msa0133920:three_prime_UTR
GACAGTCTGGAGGTCCATAT+TGG 0.388021 1_3:-65298096 Msa0133920:intron
GTCTTTCTCTGCTTGGTTAG+TGG 0.398136 1_3:+65298706 None:intergenic
TGACCAAACATGTCCACAAT+TGG 0.401881 1_3:-65298973 Msa0133920:CDS
GTTGGCCTACATTCAAGGTT+GGG 0.404646 1_3:+65298008 None:intergenic
TCTTCCGATCAGTCACTTGT+TGG 0.406067 1_3:-65297698 Msa0133920:CDS
GAGAAGTGAGACTTAATTGC+AGG 0.408777 1_3:-65297562 Msa0133920:CDS
CTTCCATGACTGTTTCATAA+GGG 0.409975 1_3:-65298874 Msa0133920:intron
TCTTCCATGACTGTTTCATA+AGG 0.417437 1_3:-65298875 Msa0133920:CDS
AATGAGTTGGCCTACATTCA+AGG 0.421076 1_3:+65298003 None:intergenic
CTATTGCCTGGTTTATCAAA+TGG 0.421381 1_3:-65299087 Msa0133920:CDS
GGTCGTCAACATGGAATAGA+AGG 0.430878 1_3:+65297253 None:intergenic
GAGGGCCGTCTTTCTCTGCT+TGG 0.432126 1_3:+65298699 None:intergenic
TCAATTCTATGAATGATTAC+GGG 0.436272 1_3:-65297219 Msa0133920:three_prime_UTR
ATGTGATGCATCAGTGTTGC+TGG 0.436794 1_3:-65298738 Msa0133920:CDS
ATGGGCATGAAGTTCAGCTT+TGG 0.440243 1_3:+65299001 None:intergenic
GGAAGAACATCCTCAAAATA+CGG 0.446099 1_3:+65298892 None:intergenic
ACATGTTTGGTCATAGTAAT+GGG 0.452448 1_3:+65298983 None:intergenic
TGTCCAATTGTGGACATGTT+TGG 0.453516 1_3:+65298970 None:intergenic
CAAGGTTGGGGCTGGTAAGT+TGG 0.465173 1_3:+65298021 None:intergenic
ACAGTTCTCGAGCTATTGCC+TGG 0.468838 1_3:-65299099 Msa0133920:CDS
TCAGCACAAGAAACAATGCC+TGG 0.469419 1_3:+65298611 None:intergenic
CCTACATTCAAGGTTGGGGC+TGG 0.480478 1_3:+65298013 None:intergenic
TTGGCCTACATTCAAGGTTG+GGG 0.486625 1_3:+65298009 None:intergenic
GAGCTTTGCTAAGAGAGGGT+TGG 0.490396 1_3:-65297978 Msa0133920:CDS
GAGAACTGTAAAATGAGGAT+TGG 0.494268 1_3:+65299113 None:intergenic
AACATCCTCAAAATACGGGC+TGG 0.495747 1_3:+65298897 None:intergenic
AAACAACTGCTAGCTGGAAA+AGG 0.497283 1_3:-65297728 Msa0133920:CDS
TATTACAAACAACTGCTAGC+TGG 0.500242 1_3:-65297734 Msa0133920:CDS
AGGGTTGGGAGTTAAAGATA+TGG 0.501982 1_3:-65297963 Msa0133920:CDS
GGTATACCTCATATCAAGAA+TGG 0.505829 1_3:-65297410 Msa0133920:three_prime_UTR
AAGCTTGAATTGGCTTGCCC+AGG 0.507178 1_3:-65298629 Msa0133920:CDS
GTACTAAAAGGACGGAAAGA+TGG 0.509250 1_3:-65298070 Msa0133920:CDS
AGTTGGCCTACATTCAAGGT+TGG 0.511821 1_3:+65298007 None:intergenic
TTTATCTGGAGGACACACTC+TGG 0.512594 1_3:-65297936 Msa0133920:CDS
TGAAATAAATGTAATTATGC+TGG 0.512886 1_3:-65297431 Msa0133920:three_prime_UTR
AGCAAGAGATGTGGTTGCCA+TGG 0.519204 1_3:-65298573 Msa0133920:intron
TTGGTGATTACAGAACTAGA+TGG 0.519606 1_3:-65297679 Msa0133920:CDS
ATATTGTAAAGAAGAGGAAA+AGG 0.524688 1_3:+65299033 None:intergenic
TTCAGAGCTTTGCTAAGAGA+GGG 0.532283 1_3:-65297982 Msa0133920:CDS
GATCGAACTGAGATATTAGG+AGG 0.532320 1_3:+65298680 None:intergenic
TACATTTATTTCAACATGAG+TGG 0.534739 1_3:+65297441 None:intergenic
TTATCTGGAGGACACACTCT+GGG 0.536646 1_3:-65297935 Msa0133920:CDS
GGTTGGGGCTGGTAAGTTGG+CGG 0.537926 1_3:+65298024 None:intergenic
AGCTCGAGAACTGTAAAATG+AGG 0.542145 1_3:+65299108 None:intergenic
GACATGTTTGGTCATAGTAA+TGG 0.542302 1_3:+65298982 None:intergenic
TTGAAACTCGGAAATCTAAG+AGG 0.544657 1_3:-65297596 Msa0133920:CDS
ACACTGATGCTGTTGAGTCC+AGG 0.545026 1_3:+65297768 None:intergenic
GTAAAGAAGAGGAAAAGGAT+TGG 0.545808 1_3:+65299038 None:intergenic
GGACAAAATCATTTCAGAGA+CGG 0.552916 1_3:-65298952 Msa0133920:CDS
TAGCAAAGCTCTGAATGAGT+TGG 0.558089 1_3:+65297990 None:intergenic
ATTCAGAGCTTTGCTAAGAG+AGG 0.558792 1_3:-65297983 Msa0133920:CDS
ATGTAAATATTGTAAAGAAG+AGG 0.564615 1_3:+65299027 None:intergenic
ATTATGTAGACGAGCCTCAA+AGG 0.566429 1_3:+65297895 None:intergenic
GAAGAACATCCTCAAAATAC+GGG 0.568324 1_3:+65298893 None:intergenic
ATCACCAACAAGTGACTGAT+CGG 0.569573 1_3:+65297694 None:intergenic
TGGCCCGAAGGTCGTCAACA+TGG 0.569611 1_3:+65297244 None:intergenic
AATCATTCATAGAATTGAAG+TGG 0.574000 1_3:+65297224 None:intergenic
CCAGCCCCAACCTTGAATGT+AGG 0.575023 1_3:-65298013 Msa0133920:CDS
GCAGCTTCAATGTTGAAACT+CGG 0.579318 1_3:-65297608 Msa0133920:CDS
TAAAAGGACGGAAAGATGGA+AGG 0.581132 1_3:-65298066 Msa0133920:CDS
ACATCCTCAAAATACGGGCT+GGG 0.585381 1_3:+65298898 None:intergenic
GAAGAGGAAAAGGATTGGAA+AGG 0.589129 1_3:+65299043 None:intergenic
CAAATTCAGTGTTCAACCGT+GGG 0.598938 1_3:+65297849 None:intergenic
AAAAGGACGGAAAGATGGAA+GGG 0.602051 1_3:-65298065 Msa0133920:CDS
GAGGAGCCATTTGATAAACC+AGG 0.610690 1_3:+65299081 None:intergenic
ATTGGAAAGTACTAAAAGGA+CGG 0.617043 1_3:-65298078 Msa0133920:CDS
GAAAGATGGAAGGGTATCAA+AGG 0.620383 1_3:-65298056 Msa0133920:CDS
CAGCACAAGAAACAATGCCT+GGG 0.620896 1_3:+65298612 None:intergenic
CTGTTCATGACACTGACCCA+CGG 0.625549 1_3:-65297865 Msa0133920:CDS
TATTTGCTCTGACAGTCTGG+AGG 0.625944 1_3:-65298106 Msa0133920:intron
CCAAACAACAACCAAAACGC+AGG 0.627767 1_3:-65297797 Msa0133920:CDS
ATACCCTTATGAAACAGTCA+TGG 0.637915 1_3:+65298871 None:intergenic
AGAAGTGAGACTTAATTGCA+GGG 0.639340 1_3:-65297561 Msa0133920:CDS
GCAAATTCAGTGTTCAACCG+TGG 0.641287 1_3:+65297848 None:intergenic
ACTAACCAAGCAGAGAAAGA+CGG 0.648493 1_3:-65298704 Msa0133920:CDS
AATATCGTATATAATTGTAG+TGG 0.651415 1_3:+65297482 None:intergenic
ATAGAATTGAAGTGGCCCGA+AGG 0.658715 1_3:+65297232 None:intergenic
CATTTGTGCACAATAGCATG+AGG 0.660144 1_3:-65297372 Msa0133920:three_prime_UTR
ATCGAACTGAGATATTAGGA+GGG 0.667185 1_3:+65298681 None:intergenic
GATATGGTGACTTTATCTGG+AGG 0.710527 1_3:-65297947 Msa0133920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAAATATTGTAAAGAAG+AGG + chr1_3:65297280-65297299 None:intergenic 20.0%
!! AATGATTAATGTTCAATGAT+AGG - chr1_3:65297542-65297561 Msa0133920:exon 20.0%
!! ATGATTAATGTTCAATGATA+GGG - chr1_3:65297543-65297562 Msa0133920:exon 20.0%
!! GATACAATTATTGGATAAAA+TGG + chr1_3:65297813-65297832 None:intergenic 20.0%
!! TAGCTTAGATAAAATTTCTT+TGG + chr1_3:65298130-65298149 None:intergenic 20.0%
!! AATATCGTATATAATTGTAG+TGG + chr1_3:65298825-65298844 None:intergenic 20.0%
!! TGAAATAAATGTAATTATGC+TGG - chr1_3:65298873-65298892 Msa0133920:intron 20.0%
!!! TTTGATGTCGATTTAATATT+TGG + chr1_3:65298975-65298994 None:intergenic 20.0%
!!! TTCTTTCATTTTCTTATCAA+GGG - chr1_3:65299010-65299029 Msa0133920:CDS 20.0%
!! TTCAATTCTATGAATGATTA+CGG - chr1_3:65299084-65299103 Msa0133920:CDS 20.0%
!! ATGTAAATATTGTAAAGAAG+AGG + chr1_3:65297280-65297299 None:intergenic 20.0%
!! AATGATTAATGTTCAATGAT+AGG - chr1_3:65297542-65297561 Msa0133920:exon 20.0%
!! ATGATTAATGTTCAATGATA+GGG - chr1_3:65297543-65297562 Msa0133920:exon 20.0%
!! GATACAATTATTGGATAAAA+TGG + chr1_3:65297813-65297832 None:intergenic 20.0%
!! TAGCTTAGATAAAATTTCTT+TGG + chr1_3:65298130-65298149 None:intergenic 20.0%
!! AATATCGTATATAATTGTAG+TGG + chr1_3:65298825-65298844 None:intergenic 20.0%
!! TGAAATAAATGTAATTATGC+TGG - chr1_3:65298873-65298892 Msa0133920:intron 20.0%
!!! TTTGATGTCGATTTAATATT+TGG + chr1_3:65298975-65298994 None:intergenic 20.0%
!!! TTCTTTCATTTTCTTATCAA+GGG - chr1_3:65299010-65299029 Msa0133920:CDS 20.0%
!! TTCAATTCTATGAATGATTA+CGG - chr1_3:65299084-65299103 Msa0133920:CDS 20.0%
! ATATTGTAAAGAAGAGGAAA+AGG + chr1_3:65297274-65297293 None:intergenic 25.0%
!!! CGTATAGTTTTTTTTACCAA+TGG - chr1_3:65297505-65297524 Msa0133920:three_prime_UTR 25.0%
! TTAGAAGATTACAAATCCAT+TGG + chr1_3:65297524-65297543 None:intergenic 25.0%
! TCTTTAGATAGATATTACCA+TGG + chr1_3:65297751-65297770 None:intergenic 25.0%
!!! AGAAGTATCAAAATTTTAGC+AGG + chr1_3:65297784-65297803 None:intergenic 25.0%
!!! GCTAAAATTTTGATACTTCT+AGG - chr1_3:65297784-65297803 Msa0133920:CDS 25.0%
! ATCTAAGCTATTTAGTATAC+TGG - chr1_3:65298140-65298159 Msa0133920:intron 25.0%
! TCTAAGCTATTTAGTATACT+GGG - chr1_3:65298141-65298160 Msa0133920:intron 25.0%
! TACATTTATTTCAACATGAG+TGG + chr1_3:65298866-65298885 None:intergenic 25.0%
!! CTTCTTTCATTTTCTTATCA+AGG - chr1_3:65299009-65299028 Msa0133920:CDS 25.0%
! AATCATTCATAGAATTGAAG+TGG + chr1_3:65299083-65299102 None:intergenic 25.0%
! TCAATTCTATGAATGATTAC+GGG - chr1_3:65299085-65299104 Msa0133920:CDS 25.0%
! ATATTGTAAAGAAGAGGAAA+AGG + chr1_3:65297274-65297293 None:intergenic 25.0%
!!! CGTATAGTTTTTTTTACCAA+TGG - chr1_3:65297505-65297524 Msa0133920:three_prime_UTR 25.0%
! TTAGAAGATTACAAATCCAT+TGG + chr1_3:65297524-65297543 None:intergenic 25.0%
! TCTTTAGATAGATATTACCA+TGG + chr1_3:65297751-65297770 None:intergenic 25.0%
!!! AGAAGTATCAAAATTTTAGC+AGG + chr1_3:65297784-65297803 None:intergenic 25.0%
!!! GCTAAAATTTTGATACTTCT+AGG - chr1_3:65297784-65297803 Msa0133920:CDS 25.0%
! ATCTAAGCTATTTAGTATAC+TGG - chr1_3:65298140-65298159 Msa0133920:intron 25.0%
! TCTAAGCTATTTAGTATACT+GGG - chr1_3:65298141-65298160 Msa0133920:intron 25.0%
! TACATTTATTTCAACATGAG+TGG + chr1_3:65298866-65298885 None:intergenic 25.0%
!! CTTCTTTCATTTTCTTATCA+AGG - chr1_3:65299009-65299028 Msa0133920:CDS 25.0%
! AATCATTCATAGAATTGAAG+TGG + chr1_3:65299083-65299102 None:intergenic 25.0%
! TCAATTCTATGAATGATTAC+GGG - chr1_3:65299085-65299104 Msa0133920:CDS 25.0%
ACATGTTTGGTCATAGTAAT+GGG + chr1_3:65297324-65297343 None:intergenic 30.0%
! GAAATGATTTTGTCCAATTG+TGG + chr1_3:65297347-65297366 None:intergenic 30.0%
AATGATCGAACTGAGATATT+AGG + chr1_3:65297630-65297649 None:intergenic 30.0%
GGCATATAGGATACAATTAT+TGG + chr1_3:65297822-65297841 None:intergenic 30.0%
CATACATATCTACTCTACAT+AGG + chr1_3:65297843-65297862 None:intergenic 30.0%
CTATGTAGAGTAGATATGTA+TGG - chr1_3:65297841-65297860 Msa0133920:CDS 30.0%
! CCTTTTAGTACTTTCCAATA+TGG + chr1_3:65298225-65298244 None:intergenic 30.0%
!! CCATATTGGAAAGTACTAAA+AGG - chr1_3:65298222-65298241 Msa0133920:intron 30.0%
!! ATTGGAAAGTACTAAAAGGA+CGG - chr1_3:65298226-65298245 Msa0133920:intron 30.0%
AAAGATATGGTGACTTTATC+TGG - chr1_3:65298354-65298373 Msa0133920:intron 30.0%
!!! GTTTTGGGCACTTATTTTTT+AGG + chr1_3:65298488-65298507 None:intergenic 30.0%
!!! TTTGGTTGTTGTTTGGTTTT+GGG + chr1_3:65298503-65298522 None:intergenic 30.0%
!!! TTTTGGTTGTTGTTTGGTTT+TGG + chr1_3:65298504-65298523 None:intergenic 30.0%
! ACTCTTTGAAAAACAAACTC+TGG + chr1_3:65298674-65298693 None:intergenic 30.0%
GCAAAGACAAAAAACAATCA+CGG + chr1_3:65298801-65298820 None:intergenic 30.0%
CATTTACCATTCTTGATATG+AGG + chr1_3:65298903-65298922 None:intergenic 30.0%
ACATGTTTGGTCATAGTAAT+GGG + chr1_3:65297324-65297343 None:intergenic 30.0%
! GAAATGATTTTGTCCAATTG+TGG + chr1_3:65297347-65297366 None:intergenic 30.0%
AATGATCGAACTGAGATATT+AGG + chr1_3:65297630-65297649 None:intergenic 30.0%
GGCATATAGGATACAATTAT+TGG + chr1_3:65297822-65297841 None:intergenic 30.0%
CATACATATCTACTCTACAT+AGG + chr1_3:65297843-65297862 None:intergenic 30.0%
CTATGTAGAGTAGATATGTA+TGG - chr1_3:65297841-65297860 Msa0133920:CDS 30.0%
! CCTTTTAGTACTTTCCAATA+TGG + chr1_3:65298225-65298244 None:intergenic 30.0%
!! CCATATTGGAAAGTACTAAA+AGG - chr1_3:65298222-65298241 Msa0133920:intron 30.0%
!! ATTGGAAAGTACTAAAAGGA+CGG - chr1_3:65298226-65298245 Msa0133920:intron 30.0%
AAAGATATGGTGACTTTATC+TGG - chr1_3:65298354-65298373 Msa0133920:intron 30.0%
!!! GTTTTGGGCACTTATTTTTT+AGG + chr1_3:65298488-65298507 None:intergenic 30.0%
!!! TTTGGTTGTTGTTTGGTTTT+GGG + chr1_3:65298503-65298522 None:intergenic 30.0%
!!! TTTTGGTTGTTGTTTGGTTT+TGG + chr1_3:65298504-65298523 None:intergenic 30.0%
! ACTCTTTGAAAAACAAACTC+TGG + chr1_3:65298674-65298693 None:intergenic 30.0%
GCAAAGACAAAAAACAATCA+CGG + chr1_3:65298801-65298820 None:intergenic 30.0%
CATTTACCATTCTTGATATG+AGG + chr1_3:65298903-65298922 None:intergenic 30.0%
GAGAACTGTAAAATGAGGAT+TGG + chr1_3:65297194-65297213 None:intergenic 35.0%
CTATTGCCTGGTTTATCAAA+TGG - chr1_3:65297217-65297236 Msa0133920:three_prime_UTR 35.0%
GTAAAGAAGAGGAAAAGGAT+TGG + chr1_3:65297269-65297288 None:intergenic 35.0%
GACATGTTTGGTCATAGTAA+TGG + chr1_3:65297325-65297344 None:intergenic 35.0%
GGACAAAATCATTTCAGAGA+CGG - chr1_3:65297352-65297371 Msa0133920:three_prime_UTR 35.0%
GAAGAACATCCTCAAAATAC+GGG + chr1_3:65297414-65297433 None:intergenic 35.0%
GGAAGAACATCCTCAAAATA+CGG + chr1_3:65297415-65297434 None:intergenic 35.0%
TCTTCCATGACTGTTTCATA+AGG - chr1_3:65297429-65297448 Msa0133920:three_prime_UTR 35.0%
CTTCCATGACTGTTTCATAA+GGG - chr1_3:65297430-65297449 Msa0133920:three_prime_UTR 35.0%
ATACCCTTATGAAACAGTCA+TGG + chr1_3:65297436-65297455 None:intergenic 35.0%
ATCGAACTGAGATATTAGGA+GGG + chr1_3:65297626-65297645 None:intergenic 35.0%
AGCTAAAGCAAAGCTTGAAT+TGG - chr1_3:65297665-65297684 Msa0133920:CDS 35.0%
TCTACTCTACATAGGCATAT+AGG + chr1_3:65297835-65297854 None:intergenic 35.0%
TATTACAAACAACTGCTAGC+TGG - chr1_3:65298570-65298589 Msa0133920:intron 35.0%
! TTGGTGATTACAGAACTAGA+TGG - chr1_3:65298625-65298644 Msa0133920:CDS 35.0%
TTGAAACTCGGAAATCTAAG+AGG - chr1_3:65298708-65298727 Msa0133920:CDS 35.0%
AAGTCTCACTTCTCCATTAT+CGG + chr1_3:65298736-65298755 None:intergenic 35.0%
AGAAGTGAGACTTAATTGCA+GGG - chr1_3:65298743-65298762 Msa0133920:CDS 35.0%
GGTATACCTCATATCAAGAA+TGG - chr1_3:65298894-65298913 Msa0133920:CDS 35.0%
GAGAACTGTAAAATGAGGAT+TGG + chr1_3:65297194-65297213 None:intergenic 35.0%
CTATTGCCTGGTTTATCAAA+TGG - chr1_3:65297217-65297236 Msa0133920:three_prime_UTR 35.0%
GTAAAGAAGAGGAAAAGGAT+TGG + chr1_3:65297269-65297288 None:intergenic 35.0%
GACATGTTTGGTCATAGTAA+TGG + chr1_3:65297325-65297344 None:intergenic 35.0%
GGACAAAATCATTTCAGAGA+CGG - chr1_3:65297352-65297371 Msa0133920:three_prime_UTR 35.0%
GAAGAACATCCTCAAAATAC+GGG + chr1_3:65297414-65297433 None:intergenic 35.0%
GGAAGAACATCCTCAAAATA+CGG + chr1_3:65297415-65297434 None:intergenic 35.0%
TCTTCCATGACTGTTTCATA+AGG - chr1_3:65297429-65297448 Msa0133920:three_prime_UTR 35.0%
CTTCCATGACTGTTTCATAA+GGG - chr1_3:65297430-65297449 Msa0133920:three_prime_UTR 35.0%
ATACCCTTATGAAACAGTCA+TGG + chr1_3:65297436-65297455 None:intergenic 35.0%
ATCGAACTGAGATATTAGGA+GGG + chr1_3:65297626-65297645 None:intergenic 35.0%
AGCTAAAGCAAAGCTTGAAT+TGG - chr1_3:65297665-65297684 Msa0133920:CDS 35.0%
TCTACTCTACATAGGCATAT+AGG + chr1_3:65297835-65297854 None:intergenic 35.0%
TATTACAAACAACTGCTAGC+TGG - chr1_3:65298570-65298589 Msa0133920:intron 35.0%
! TTGGTGATTACAGAACTAGA+TGG - chr1_3:65298625-65298644 Msa0133920:CDS 35.0%
TTGAAACTCGGAAATCTAAG+AGG - chr1_3:65298708-65298727 Msa0133920:CDS 35.0%
AAGTCTCACTTCTCCATTAT+CGG + chr1_3:65298736-65298755 None:intergenic 35.0%
AGAAGTGAGACTTAATTGCA+GGG - chr1_3:65298743-65298762 Msa0133920:CDS 35.0%
GGTATACCTCATATCAAGAA+TGG - chr1_3:65298894-65298913 Msa0133920:CDS 35.0%
AGCTCGAGAACTGTAAAATG+AGG + chr1_3:65297199-65297218 None:intergenic 40.0%
GAAGAGGAAAAGGATTGGAA+AGG + chr1_3:65297264-65297283 None:intergenic 40.0%
TGACCAAACATGTCCACAAT+TGG - chr1_3:65297331-65297350 Msa0133920:three_prime_UTR 40.0%
TGTCCAATTGTGGACATGTT+TGG + chr1_3:65297337-65297356 None:intergenic 40.0%
!! TTTTGGGTCATGGATAGAAG+CGG + chr1_3:65297384-65297403 None:intergenic 40.0%
ACTAACCAAGCAGAGAAAGA+CGG - chr1_3:65297600-65297619 Msa0133920:CDS 40.0%
GATCGAACTGAGATATTAGG+AGG + chr1_3:65297627-65297646 None:intergenic 40.0%
! TGCTCTTTTAGCAAGAGATG+TGG - chr1_3:65297722-65297741 Msa0133920:CDS 40.0%
GTACTAAAAGGACGGAAAGA+TGG - chr1_3:65298234-65298253 Msa0133920:intron 40.0%
TAAAAGGACGGAAAGATGGA+AGG - chr1_3:65298238-65298257 Msa0133920:intron 40.0%
AAAAGGACGGAAAGATGGAA+GGG - chr1_3:65298239-65298258 Msa0133920:intron 40.0%
!! GAAAGATGGAAGGGTATCAA+AGG - chr1_3:65298248-65298267 Msa0133920:intron 40.0%
! AATGAGTTGGCCTACATTCA+AGG + chr1_3:65298304-65298323 None:intergenic 40.0%
!! TAGCAAAGCTCTGAATGAGT+TGG + chr1_3:65298317-65298336 None:intergenic 40.0%
ATTCAGAGCTTTGCTAAGAG+AGG - chr1_3:65298321-65298340 Msa0133920:intron 40.0%
TTCAGAGCTTTGCTAAGAGA+GGG - chr1_3:65298322-65298341 Msa0133920:intron 40.0%
AGGGTTGGGAGTTAAAGATA+TGG - chr1_3:65298341-65298360 Msa0133920:intron 40.0%
GATATGGTGACTTTATCTGG+AGG - chr1_3:65298357-65298376 Msa0133920:intron 40.0%
CTCACATTGTTCTTCCTTTG+AGG - chr1_3:65298395-65298414 Msa0133920:intron 40.0%
ATTATGTAGACGAGCCTCAA+AGG + chr1_3:65298412-65298431 None:intergenic 40.0%
CAAATTCAGTGTTCAACCGT+GGG + chr1_3:65298458-65298477 None:intergenic 40.0%
AAACAACTGCTAGCTGGAAA+AGG - chr1_3:65298576-65298595 Msa0133920:CDS 40.0%
ATCACCAACAAGTGACTGAT+CGG + chr1_3:65298613-65298632 None:intergenic 40.0%
GCAGCTTCAATGTTGAAACT+CGG - chr1_3:65298696-65298715 Msa0133920:CDS 40.0%
AATCTAAGAGGCTCCGATAA+TGG - chr1_3:65298720-65298739 Msa0133920:CDS 40.0%
GAGAAGTGAGACTTAATTGC+AGG - chr1_3:65298742-65298761 Msa0133920:CDS 40.0%
CATTTGTGCACAATAGCATG+AGG - chr1_3:65298932-65298951 Msa0133920:CDS 40.0%
TATTCCATGTTGACGACCTT+CGG - chr1_3:65299056-65299075 Msa0133920:CDS 40.0%
AGCTCGAGAACTGTAAAATG+AGG + chr1_3:65297199-65297218 None:intergenic 40.0%
GAAGAGGAAAAGGATTGGAA+AGG + chr1_3:65297264-65297283 None:intergenic 40.0%
TGACCAAACATGTCCACAAT+TGG - chr1_3:65297331-65297350 Msa0133920:three_prime_UTR 40.0%
TGTCCAATTGTGGACATGTT+TGG + chr1_3:65297337-65297356 None:intergenic 40.0%
!! TTTTGGGTCATGGATAGAAG+CGG + chr1_3:65297384-65297403 None:intergenic 40.0%
ACTAACCAAGCAGAGAAAGA+CGG - chr1_3:65297600-65297619 Msa0133920:CDS 40.0%
GATCGAACTGAGATATTAGG+AGG + chr1_3:65297627-65297646 None:intergenic 40.0%
! TGCTCTTTTAGCAAGAGATG+TGG - chr1_3:65297722-65297741 Msa0133920:CDS 40.0%
GTACTAAAAGGACGGAAAGA+TGG - chr1_3:65298234-65298253 Msa0133920:intron 40.0%
TAAAAGGACGGAAAGATGGA+AGG - chr1_3:65298238-65298257 Msa0133920:intron 40.0%
AAAAGGACGGAAAGATGGAA+GGG - chr1_3:65298239-65298258 Msa0133920:intron 40.0%
!! GAAAGATGGAAGGGTATCAA+AGG - chr1_3:65298248-65298267 Msa0133920:intron 40.0%
! AATGAGTTGGCCTACATTCA+AGG + chr1_3:65298304-65298323 None:intergenic 40.0%
!! TAGCAAAGCTCTGAATGAGT+TGG + chr1_3:65298317-65298336 None:intergenic 40.0%
ATTCAGAGCTTTGCTAAGAG+AGG - chr1_3:65298321-65298340 Msa0133920:intron 40.0%
TTCAGAGCTTTGCTAAGAGA+GGG - chr1_3:65298322-65298341 Msa0133920:intron 40.0%
AGGGTTGGGAGTTAAAGATA+TGG - chr1_3:65298341-65298360 Msa0133920:intron 40.0%
GATATGGTGACTTTATCTGG+AGG - chr1_3:65298357-65298376 Msa0133920:intron 40.0%
CTCACATTGTTCTTCCTTTG+AGG - chr1_3:65298395-65298414 Msa0133920:intron 40.0%
ATTATGTAGACGAGCCTCAA+AGG + chr1_3:65298412-65298431 None:intergenic 40.0%
CAAATTCAGTGTTCAACCGT+GGG + chr1_3:65298458-65298477 None:intergenic 40.0%
AAACAACTGCTAGCTGGAAA+AGG - chr1_3:65298576-65298595 Msa0133920:CDS 40.0%
ATCACCAACAAGTGACTGAT+CGG + chr1_3:65298613-65298632 None:intergenic 40.0%
GCAGCTTCAATGTTGAAACT+CGG - chr1_3:65298696-65298715 Msa0133920:CDS 40.0%
AATCTAAGAGGCTCCGATAA+TGG - chr1_3:65298720-65298739 Msa0133920:CDS 40.0%
GAGAAGTGAGACTTAATTGC+AGG - chr1_3:65298742-65298761 Msa0133920:CDS 40.0%
CATTTGTGCACAATAGCATG+AGG - chr1_3:65298932-65298951 Msa0133920:CDS 40.0%
TATTCCATGTTGACGACCTT+CGG - chr1_3:65299056-65299075 Msa0133920:CDS 40.0%
GAGGAGCCATTTGATAAACC+AGG + chr1_3:65297226-65297245 None:intergenic 45.0%
!! AAGGTGTTTTGTGCTAGCAG+AGG + chr1_3:65297245-65297264 None:intergenic 45.0%
ATGGGCATGAAGTTCAGCTT+TGG + chr1_3:65297306-65297325 None:intergenic 45.0%
!!! AAATACGGGCTGGGACTTTT+GGG + chr1_3:65297400-65297419 None:intergenic 45.0%
!!! AAAATACGGGCTGGGACTTT+TGG + chr1_3:65297401-65297420 None:intergenic 45.0%
ACATCCTCAAAATACGGGCT+GGG + chr1_3:65297409-65297428 None:intergenic 45.0%
AACATCCTCAAAATACGGGC+TGG + chr1_3:65297410-65297429 None:intergenic 45.0%
ATGTGATGCATCAGTGTTGC+TGG - chr1_3:65297566-65297585 Msa0133920:CDS 45.0%
GTCTTTCTCTGCTTGGTTAG+TGG + chr1_3:65297601-65297620 None:intergenic 45.0%
CAGCACAAGAAACAATGCCT+GGG + chr1_3:65297695-65297714 None:intergenic 45.0%
TCAGCACAAGAAACAATGCC+TGG + chr1_3:65297696-65297715 None:intergenic 45.0%
CCAGACTGTCAGAGCAAATA+GGG + chr1_3:65298198-65298217 None:intergenic 45.0%
TCCAGACTGTCAGAGCAAAT+AGG + chr1_3:65298199-65298218 None:intergenic 45.0%
TATTTGCTCTGACAGTCTGG+AGG - chr1_3:65298198-65298217 Msa0133920:intron 45.0%
TTGGCCTACATTCAAGGTTG+GGG + chr1_3:65298298-65298317 None:intergenic 45.0%
! GTTGGCCTACATTCAAGGTT+GGG + chr1_3:65298299-65298318 None:intergenic 45.0%
! AGTTGGCCTACATTCAAGGT+TGG + chr1_3:65298300-65298319 None:intergenic 45.0%
AGCTTTGCTAAGAGAGGGTT+GGG - chr1_3:65298327-65298346 Msa0133920:intron 45.0%
TTTATCTGGAGGACACACTC+TGG - chr1_3:65298368-65298387 Msa0133920:intron 45.0%
TTATCTGGAGGACACACTCT+GGG - chr1_3:65298369-65298388 Msa0133920:intron 45.0%
GCAAATTCAGTGTTCAACCG+TGG + chr1_3:65298459-65298478 None:intergenic 45.0%
!!! CCTGCGTTTTGGTTGTTGTT+TGG + chr1_3:65298510-65298529 None:intergenic 45.0%
CCAAACAACAACCAAAACGC+AGG - chr1_3:65298507-65298526 Msa0133920:intron 45.0%
TCTTCCGATCAGTCACTTGT+TGG - chr1_3:65298606-65298625 Msa0133920:CDS 45.0%
GGTCGTCAACATGGAATAGA+AGG + chr1_3:65299054-65299073 None:intergenic 45.0%
ATTCCATGTTGACGACCTTC+GGG - chr1_3:65299057-65299076 Msa0133920:CDS 45.0%
ATAGAATTGAAGTGGCCCGA+AGG + chr1_3:65299075-65299094 None:intergenic 45.0%
GAGGAGCCATTTGATAAACC+AGG + chr1_3:65297226-65297245 None:intergenic 45.0%
!! AAGGTGTTTTGTGCTAGCAG+AGG + chr1_3:65297245-65297264 None:intergenic 45.0%
ATGGGCATGAAGTTCAGCTT+TGG + chr1_3:65297306-65297325 None:intergenic 45.0%
!!! AAATACGGGCTGGGACTTTT+GGG + chr1_3:65297400-65297419 None:intergenic 45.0%
!!! AAAATACGGGCTGGGACTTT+TGG + chr1_3:65297401-65297420 None:intergenic 45.0%
ACATCCTCAAAATACGGGCT+GGG + chr1_3:65297409-65297428 None:intergenic 45.0%
AACATCCTCAAAATACGGGC+TGG + chr1_3:65297410-65297429 None:intergenic 45.0%
ATGTGATGCATCAGTGTTGC+TGG - chr1_3:65297566-65297585 Msa0133920:CDS 45.0%
GTCTTTCTCTGCTTGGTTAG+TGG + chr1_3:65297601-65297620 None:intergenic 45.0%
CAGCACAAGAAACAATGCCT+GGG + chr1_3:65297695-65297714 None:intergenic 45.0%
TCAGCACAAGAAACAATGCC+TGG + chr1_3:65297696-65297715 None:intergenic 45.0%
CCAGACTGTCAGAGCAAATA+GGG + chr1_3:65298198-65298217 None:intergenic 45.0%
TCCAGACTGTCAGAGCAAAT+AGG + chr1_3:65298199-65298218 None:intergenic 45.0%
TATTTGCTCTGACAGTCTGG+AGG - chr1_3:65298198-65298217 Msa0133920:intron 45.0%
TTGGCCTACATTCAAGGTTG+GGG + chr1_3:65298298-65298317 None:intergenic 45.0%
! GTTGGCCTACATTCAAGGTT+GGG + chr1_3:65298299-65298318 None:intergenic 45.0%
! AGTTGGCCTACATTCAAGGT+TGG + chr1_3:65298300-65298319 None:intergenic 45.0%
AGCTTTGCTAAGAGAGGGTT+GGG - chr1_3:65298327-65298346 Msa0133920:intron 45.0%
TTTATCTGGAGGACACACTC+TGG - chr1_3:65298368-65298387 Msa0133920:intron 45.0%
TTATCTGGAGGACACACTCT+GGG - chr1_3:65298369-65298388 Msa0133920:intron 45.0%
GCAAATTCAGTGTTCAACCG+TGG + chr1_3:65298459-65298478 None:intergenic 45.0%
!!! CCTGCGTTTTGGTTGTTGTT+TGG + chr1_3:65298510-65298529 None:intergenic 45.0%
CCAAACAACAACCAAAACGC+AGG - chr1_3:65298507-65298526 Msa0133920:intron 45.0%
TCTTCCGATCAGTCACTTGT+TGG - chr1_3:65298606-65298625 Msa0133920:CDS 45.0%
GGTCGTCAACATGGAATAGA+AGG + chr1_3:65299054-65299073 None:intergenic 45.0%
ATTCCATGTTGACGACCTTC+GGG - chr1_3:65299057-65299076 Msa0133920:CDS 45.0%
ATAGAATTGAAGTGGCCCGA+AGG + chr1_3:65299075-65299094 None:intergenic 45.0%
ACAGTTCTCGAGCTATTGCC+TGG - chr1_3:65297205-65297224 Msa0133920:three_prime_UTR 50.0%
! AAGTCCCAGCCCGTATTTTG+AGG - chr1_3:65297402-65297421 Msa0133920:three_prime_UTR 50.0%
!! AAGCTTGAATTGGCTTGCCC+AGG - chr1_3:65297675-65297694 Msa0133920:CDS 50.0%
AGCAAGAGATGTGGTTGCCA+TGG - chr1_3:65297731-65297750 Msa0133920:CDS 50.0%
CCCTATTTGCTCTGACAGTC+TGG - chr1_3:65298195-65298214 Msa0133920:intron 50.0%
GACAGTCTGGAGGTCCATAT+TGG - chr1_3:65298208-65298227 Msa0133920:intron 50.0%
GAGCTTTGCTAAGAGAGGGT+TGG - chr1_3:65298326-65298345 Msa0133920:intron 50.0%
CTGTTCATGACACTGACCCA+CGG - chr1_3:65298439-65298458 Msa0133920:intron 50.0%
ACACTGATGCTGTTGAGTCC+AGG + chr1_3:65298539-65298558 None:intergenic 50.0%
ACAGTTCTCGAGCTATTGCC+TGG - chr1_3:65297205-65297224 Msa0133920:three_prime_UTR 50.0%
! AAGTCCCAGCCCGTATTTTG+AGG - chr1_3:65297402-65297421 Msa0133920:three_prime_UTR 50.0%
!! AAGCTTGAATTGGCTTGCCC+AGG - chr1_3:65297675-65297694 Msa0133920:CDS 50.0%
AGCAAGAGATGTGGTTGCCA+TGG - chr1_3:65297731-65297750 Msa0133920:CDS 50.0%
CCCTATTTGCTCTGACAGTC+TGG - chr1_3:65298195-65298214 Msa0133920:intron 50.0%
GACAGTCTGGAGGTCCATAT+TGG - chr1_3:65298208-65298227 Msa0133920:intron 50.0%
GAGCTTTGCTAAGAGAGGGT+TGG - chr1_3:65298326-65298345 Msa0133920:intron 50.0%
CTGTTCATGACACTGACCCA+CGG - chr1_3:65298439-65298458 Msa0133920:intron 50.0%
ACACTGATGCTGTTGAGTCC+AGG + chr1_3:65298539-65298558 None:intergenic 50.0%
! CAAGGTTGGGGCTGGTAAGT+TGG + chr1_3:65298286-65298305 None:intergenic 55.0%
CCTACATTCAAGGTTGGGGC+TGG + chr1_3:65298294-65298313 None:intergenic 55.0%
CCAGCCCCAACCTTGAATGT+AGG - chr1_3:65298291-65298310 Msa0133920:intron 55.0%
! CCAGGAACTGTCCTGCGTTT+TGG + chr1_3:65298521-65298540 None:intergenic 55.0%
CCAAAACGCAGGACAGTTCC+TGG - chr1_3:65298518-65298537 Msa0133920:intron 55.0%
! CAAGGTTGGGGCTGGTAAGT+TGG + chr1_3:65298286-65298305 None:intergenic 55.0%
CCTACATTCAAGGTTGGGGC+TGG + chr1_3:65298294-65298313 None:intergenic 55.0%
CCAGCCCCAACCTTGAATGT+AGG - chr1_3:65298291-65298310 Msa0133920:intron 55.0%
! CCAGGAACTGTCCTGCGTTT+TGG + chr1_3:65298521-65298540 None:intergenic 55.0%
CCAAAACGCAGGACAGTTCC+TGG - chr1_3:65298518-65298537 Msa0133920:intron 55.0%
!! GGGCTGGGACTTTTGGGTCA+TGG + chr1_3:65297394-65297413 None:intergenic 60.0%
GAGGGCCGTCTTTCTCTGCT+TGG + chr1_3:65297608-65297627 None:intergenic 60.0%
! GGTTGGGGCTGGTAAGTTGG+CGG + chr1_3:65298283-65298302 None:intergenic 60.0%
TGGCCCGAAGGTCGTCAACA+TGG + chr1_3:65299063-65299082 None:intergenic 60.0%
!! GGGCTGGGACTTTTGGGTCA+TGG + chr1_3:65297394-65297413 None:intergenic 60.0%
GAGGGCCGTCTTTCTCTGCT+TGG + chr1_3:65297608-65297627 None:intergenic 60.0%
! GGTTGGGGCTGGTAAGTTGG+CGG + chr1_3:65298283-65298302 None:intergenic 60.0%
TGGCCCGAAGGTCGTCAACA+TGG + chr1_3:65299063-65299082 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 65297188 65299138 65297188 ID=Msa0133920;Name=Msa0133920
chr1_3 mRNA 65297188 65299138 65297188 ID=Msa0133920-mRNA-1;Parent=Msa0133920;Name=Msa0133920-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|1|1|1|1|3|362|338
chr1_3 exon 65297188 65298113 65297188 ID=Msa0133920-mRNA-1:exon:22189;Parent=Msa0133920-mRNA-1
chr1_3 exon 65298574 65298762 65298574 ID=Msa0133920-mRNA-1:exon:22188;Parent=Msa0133920-mRNA-1
chr1_3 exon 65298875 65299138 65298875 ID=Msa0133920-mRNA-1:exon:22187;Parent=Msa0133920-mRNA-1
chr1_3 CDS 65298875 65299138 65298875 ID=Msa0133920-mRNA-1:cds;Parent=Msa0133920-mRNA-1
chr1_3 CDS 65298574 65298762 65298574 ID=Msa0133920-mRNA-1:cds;Parent=Msa0133920-mRNA-1
chr1_3 CDS 65297550 65298113 65297550 ID=Msa0133920-mRNA-1:cds;Parent=Msa0133920-mRNA-1
chr1_3 three_prime_UTR 65297188 65297549 65297188 ID=Msa0133920-mRNA-1:three_prime_utr;Parent=Msa0133920-mRNA-1
Gene Sequence

>Msa0133920

CATCCAATCCTCATTTTACAGTTCTCGAGCTATTGCCTGGTTTATCAAATGGCTCCTCTGCTAGCACAAAACACCTTTCCAATCCTTTTCCTCTTCTTTACAATATTTACATTATCCAAAGCTGAACTTCATGCCCATTACTATGACCAAACATGTCCACAATTGGACAAAATCATTTCAGAGACGGTTCTAACCGCTTCTATCCATGACCCAAAAGTCCCAGCCCGTATTTTGAGGATGTTCTTCCATGACTGTTTCATAAGGGGATGTGATGCATCAGTGTTGCTGGATTCAACTGCCACTAACCAAGCAGAGAAAGACGGCCCTCCTAATATCTCAGTTCGATCATTCTATGTGATTGATGAAGCTAAAGCAAAGCTTGAATTGGCTTGCCCAGGCATTGTTTCTTGTGCTGATATACTTGCTCTTTTAGCAAGAGATGTGGTTGCCATGTCTGGAGGTCCATATTGGAAAGTACTAAAAGGACGGAAAGATGGAAGGGTATCAAAGGCATCTGATACCGCCAACTTACCAGCCCCAACCTTGAATGTAGGCCAACTCATTCAGAGCTTTGCTAAGAGAGGGTTGGGAGTTAAAGATATGGTGACTTTATCTGGAGGACACACTCTGGGTTTCTCACATTGTTCTTCCTTTGAGGCTCGTCTACATAATTTCAGTTCTGTTCATGACACTGACCCACGGTTGAACACTGAATTTGCACTAGACCTAAAAAATAAGTGCCCAAAACCAAACAACAACCAAAACGCAGGACAGTTCCTGGACTCAACAGCATCAGTGTTTGATAATGACTATTACAAACAACTGCTAGCTGGAAAAGGTGTGTTTTCTTCCGATCAGTCACTTGTTGGTGATTACAGAACTAGATGGATTGTTGAAGCATTTGCAAGAGACCAGAGTTTGTTTTTCAAAGAGTTTGCAGCTTCAATGTTGAAACTCGGAAATCTAAGAGGCTCCGATAATGGAGAAGTGAGACTTAATTGCAGGGTTGTGAATTGA
Protein sequence

>Msa0133920

HPILILQFSSYCLVYQMAPLLAQNTFPILFLFFTIFTLSKAELHAHYYDQTCPQLDKIISETVLTASIHDPKVPARILRMFFHDCFIRGCDASVLLDSTATNQAEKDGPPNISVRSFYVIDEAKAKLELACPGIVSCADILALLARDVVAMSGGPYWKVLKGRKDGRVSKASDTANLPAPTLNVGQLIQSFAKRGLGVKDMVTLSGGHTLGFSHCSSFEARLHNFSSVHDTDPRLNTEFALDLKNKCPKPNNNQNAGQFLDSTASVFDNDYYKQLLAGKGVFSSDQSLVGDYRTRWIVEAFARDQSLFFKEFAASMLKLGNLRGSDNGEVRLNCRVVN*