Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110280 | sp|Q94CG2|BET12_ARATH | 65.385 | 130 | 43 | 1 | 1 | 130 | 1 | 128 | 3.24e-58 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110280 | I3S539 | 98.496 | 133 | 2 | 0 | 1 | 133 | 1 | 133 | 1.19e-88 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016060 | Msa0110280 | 0.906972 | 8.369863e-81 | -8.615850e-47 |
| Msa0081650 | Msa0110280 | 0.804063 | 2.585660e-49 | -8.615850e-47 |
| Msa0110280 | Msa0167980 | 0.802439 | 5.606498e-49 | -8.615850e-47 |
| Msa0110280 | Msa0532980 | 0.802219 | 6.224199e-49 | -8.615850e-47 |
| Msa0110280 | Msa0618950 | 0.802334 | 5.893282e-49 | -8.615850e-47 |
| Msa0110280 | Msa0618970 | 0.808769 | 2.631220e-50 | -8.615850e-47 |
| Msa0110280 | Msa0667770 | 0.807647 | 4.564837e-50 | -8.615850e-47 |
| Msa0110280 | Msa0667790 | 0.813862 | 2.064614e-51 | -8.615850e-47 |
| Msa0110280 | Msa1089320 | 0.808656 | 2.782172e-50 | -8.615850e-47 |
| Msa0110280 | Msa1114590 | 0.806367 | 8.512571e-50 | -8.615850e-47 |
| Msa0110280 | Msa1364210 | 0.813347 | 2.680357e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110280 | MtrunA17_Chr1g0168091 | 98.496 | 133 | 2 | 0 | 1 | 133 | 1 | 133 | 2.30e-92 | 263 |
| Msa0110280 | MtrunA17_Chr1g0184301 | 58.915 | 129 | 46 | 2 | 1 | 125 | 2 | 127 | 2.10e-43 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110280 | AT4G14455.1 | 65.385 | 130 | 43 | 1 | 1 | 130 | 1 | 128 | 3.29e-59 | 179 |
| Msa0110280 | AT3G58170.1 | 60.000 | 125 | 47 | 1 | 1 | 125 | 1 | 122 | 2.99e-47 | 149 |
Find 57 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCATATACTACCTTATT+AGG | 0.142736 | 1_3:-22971413 | Msa0110280:intron |
| GTCTGGAGGAGGGTGGTTTA+AGG | 0.196647 | 1_3:-22972708 | Msa0110280:CDS |
| CCATGTGATTCCAGCTTATC+TGG | 0.204248 | 1_3:+22969758 | None:intergenic |
| ATGGAATCATTTACCTAATA+AGG | 0.207367 | 1_3:+22971400 | None:intergenic |
| AATTCATTAGGGTAATAAAA+TGG | 0.317654 | 1_3:-22971642 | Msa0110280:intron |
| TTTAGATGGTCTTGATAGTC+TGG | 0.346866 | 1_3:-22972725 | Msa0110280:CDS |
| ATCCATGACAATGGTGTGTT+TGG | 0.352630 | 1_3:+22969782 | None:intergenic |
| TTACTTGATCAACAGTTAAC+AGG | 0.362727 | 1_3:-22971788 | Msa0110280:intron |
| TCTGGAGGAGGGTGGTTTAA+GGG | 0.370422 | 1_3:-22972707 | Msa0110280:CDS |
| TGCAATCTAGCTTTATAAAA+CGG | 0.374601 | 1_3:+22970080 | None:intergenic |
| TCTGCCGTGCAGAGTGTCTA+TGG | 0.375220 | 1_3:+22972636 | None:intergenic |
| TATGAAGTGATTTATTTGTT+TGG | 0.377936 | 1_3:-22969838 | Msa0110280:three_prime_UTR |
| ACCATCTAAAAGTGATGATC+TGG | 0.403747 | 1_3:+22972738 | None:intergenic |
| TGGATCAAGGGGTATGATGT+TGG | 0.411208 | 1_3:-22971618 | Msa0110280:CDS |
| GCAATCTAGCTTTATAAAAC+GGG | 0.413183 | 1_3:+22970081 | None:intergenic |
| CGCACACTTTGCAGGATGCT+TGG | 0.422916 | 1_3:-22970125 | Msa0110280:intron |
| GGATCAAGGGGTATGATGTT+GGG | 0.453741 | 1_3:-22971617 | Msa0110280:CDS |
| AAACCACATGCCAACGGTTC+CGG | 0.461643 | 1_3:+22970008 | None:intergenic |
| GTAATAAAATGGATGGATCA+AGG | 0.462679 | 1_3:-22971631 | Msa0110280:CDS |
| TAGATTGCATGATGGTCGTT+TGG | 0.475001 | 1_3:-22970066 | Msa0110280:three_prime_UTR |
| TCCATGACAATGGTGTGTTT+GGG | 0.498987 | 1_3:+22969783 | None:intergenic |
| GTCATAACAGTATGCTCGAT+CGG | 0.499149 | 1_3:-22971742 | Msa0110280:CDS |
| TAATAAAATGGATGGATCAA+GGG | 0.502217 | 1_3:-22971630 | Msa0110280:CDS |
| CATGTGATTCCAGCTTATCT+GGG | 0.502928 | 1_3:+22969759 | None:intergenic |
| CATTAGGGTAATAAAATGGA+TGG | 0.512084 | 1_3:-22971638 | Msa0110280:intron |
| GTCATGGATCCCAGATAAGC+TGG | 0.513548 | 1_3:-22969768 | Msa0110280:three_prime_UTR |
| GTTTACTTTCCCTCCTCACA+TGG | 0.526159 | 1_3:-22969926 | Msa0110280:three_prime_UTR |
| AAGGTAGTATATGAATATGA+AGG | 0.530565 | 1_3:+22971419 | None:intergenic |
| TACCTTCTTGAATCGATCCA+TGG | 0.534362 | 1_3:+22971592 | None:intergenic |
| TCATAACAGTATGCTCGATC+GGG | 0.535450 | 1_3:-22971741 | Msa0110280:CDS |
| AAGGAAAACATGCTCACTTG+TGG | 0.536458 | 1_3:-22971457 | Msa0110280:CDS |
| TTCATGTGCTGTAAAATGTC+CGG | 0.540929 | 1_3:-22970027 | Msa0110280:three_prime_UTR |
| TGGTCTTGATAGTCTGGAGG+AGG | 0.542729 | 1_3:-22972719 | Msa0110280:CDS |
| GGGTATGATGTTGGGAACCA+TGG | 0.547345 | 1_3:-22971609 | Msa0110280:CDS |
| AGGAAAACATGCTCACTTGT+GGG | 0.548660 | 1_3:-22971456 | Msa0110280:CDS |
| TGTAAAATGTCCGGAACCGT+TGG | 0.554411 | 1_3:-22970018 | Msa0110280:three_prime_UTR |
| AATAAAATGGATGGATCAAG+GGG | 0.563592 | 1_3:-22971629 | Msa0110280:CDS |
| TATAAAGCTAGATTGCATGA+TGG | 0.564350 | 1_3:-22970074 | Msa0110280:three_prime_UTR |
| ACTAATCAATGAGTTACAGA+AGG | 0.568859 | 1_3:-22974710 | Msa0110280:intron |
| AAAGTGATGATCTGGATGAC+CGG | 0.575798 | 1_3:+22972746 | None:intergenic |
| AATGTTTAGAAATGACGAGA+AGG | 0.576825 | 1_3:+22974796 | None:intergenic |
| TCCCAAACACACCATTGTCA+TGG | 0.578925 | 1_3:-22969784 | Msa0110280:three_prime_UTR |
| CTTGATAGTCTGGAGGAGGG+TGG | 0.583431 | 1_3:-22972715 | Msa0110280:CDS |
| CCAGATAAGCTGGAATCACA+TGG | 0.585397 | 1_3:-22969758 | Msa0110280:three_prime_UTR |
| GATACATGACCATGTGAGGA+GGG | 0.595826 | 1_3:+22969917 | None:intergenic |
| AAATGATACATGACCATGTG+AGG | 0.600915 | 1_3:+22969913 | None:intergenic |
| AGATGGTCTTGATAGTCTGG+AGG | 0.606964 | 1_3:-22972722 | Msa0110280:CDS |
| TGATACATGACCATGTGAGG+AGG | 0.610278 | 1_3:+22969916 | None:intergenic |
| TGTCCGGAACCGTTGGCATG+TGG | 0.613009 | 1_3:-22970011 | Msa0110280:three_prime_UTR |
| AACCATGGATCGATTCAAGA+AGG | 0.613381 | 1_3:-22971594 | Msa0110280:intron |
| AGTTTCAAACCACATGCCAA+CGG | 0.633519 | 1_3:+22970002 | None:intergenic |
| AACAGGTGATATACATGAGG+AGG | 0.637938 | 1_3:-22971771 | Msa0110280:CDS |
| TAACAGTATGCTCGATCGGG+TGG | 0.649983 | 1_3:-22971738 | Msa0110280:intron |
| GGTCTTGATAGTCTGGAGGA+GGG | 0.664369 | 1_3:-22972718 | Msa0110280:CDS |
| GTTAACAGGTGATATACATG+AGG | 0.676350 | 1_3:-22971774 | Msa0110280:CDS |
| TTATCTGGGATCCATGACAA+TGG | 0.682635 | 1_3:+22969773 | None:intergenic |
| AATGCCATAGACACTCTGCA+CGG | 0.704819 | 1_3:-22972640 | Msa0110280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCATTAATAATTCATTT+TGG | - | chr1_3:22971506-22971525 | Msa0110280:intron | 10.0% |
| !!! | ATAATAATGAAATTTTGTTT+CGG | - | chr1_3:22972075-22972094 | Msa0110280:intron | 10.0% |
| !!! | TTTAATTTGAATTTTTGTTT+TGG | - | chr1_3:22972196-22972215 | Msa0110280:intron | 10.0% |
| !! | AATACAGAAAATTATAAATA+GGG | + | chr1_3:22972248-22972267 | None:intergenic | 10.0% |
| !!! | TTTTTGAATGATTGATTTTT+AGG | - | chr1_3:22970295-22970314 | Msa0110280:intron | 15.0% |
| !!! | TTTTGAATGATTGATTTTTA+GGG | - | chr1_3:22970296-22970315 | Msa0110280:intron | 15.0% |
| !!! | ATAGTTTTAAATTGAAAATC+AGG | - | chr1_3:22970979-22970998 | Msa0110280:intron | 15.0% |
| !! | AGAAAAGTAATAAAAATTAG+TGG | + | chr1_3:22971612-22971631 | None:intergenic | 15.0% |
| !! | GAATACAGAAAATTATAAAT+AGG | + | chr1_3:22972249-22972268 | None:intergenic | 15.0% |
| !! | ATATTAAAAGTCAATAGATA+AGG | + | chr1_3:22972687-22972706 | None:intergenic | 15.0% |
| !! | AGATTAATCAAACTATAAAA+AGG | - | chr1_3:22974125-22974144 | Msa0110280:intron | 15.0% |
| !! | ATTTATTATTATTCACAACA+AGG | + | chr1_3:22974316-22974335 | None:intergenic | 15.0% |
| !! | TATATAAGCGGTAATTAAAA+TGG | + | chr1_3:22969835-22969854 | None:intergenic | 20.0% |
| !! | GCTTAAATTAAATGAAATGA+AGG | + | chr1_3:22969893-22969912 | None:intergenic | 20.0% |
| !!! | TCATTCTTTTCAATTTATTC+AGG | - | chr1_3:22971462-22971481 | Msa0110280:CDS | 20.0% |
| !! | TAATTTCTTATCTTAACATC+TGG | - | chr1_3:22971967-22971986 | Msa0110280:intron | 20.0% |
| !! | TCAATGTATTTGTAGATAAA+AGG | - | chr1_3:22972336-22972355 | Msa0110280:intron | 20.0% |
| !! | AATTCATTAGGGTAATAAAA+TGG | - | chr1_3:22972853-22972872 | Msa0110280:intron | 20.0% |
| !!! | TAAATCATTTTTCGATATTG+CGG | + | chr1_3:22972974-22972993 | None:intergenic | 20.0% |
| !!! | GTATAAAAACTGAATTTTGT+AGG | - | chr1_3:22972996-22973015 | Msa0110280:intron | 20.0% |
| !! | TATTCATATACTACCTTATT+AGG | - | chr1_3:22973082-22973101 | Msa0110280:intron | 20.0% |
| !!! | GTGATTTAATATCAGTATTT+TGG | - | chr1_3:22973357-22973376 | Msa0110280:intron | 20.0% |
| !! | CTTCATATATAGAATTTGAT+AGG | - | chr1_3:22973618-22973637 | Msa0110280:intron | 20.0% |
| !! | AGATTAATCAAACTAAAGAA+AGG | - | chr1_3:22973663-22973682 | Msa0110280:intron | 20.0% |
| !!! | TGATTTAACATCAGTATTTT+TGG | - | chr1_3:22973813-22973832 | Msa0110280:intron | 20.0% |
| !! | GATGCAATAATTTAAGAAAA+TGG | - | chr1_3:22973965-22973984 | Msa0110280:intron | 20.0% |
| !! | CTTCATATATACAATTTGAT+AGG | - | chr1_3:22974080-22974099 | Msa0110280:intron | 20.0% |
| !! | TATGAAGTGATTTATTTGTT+TGG | - | chr1_3:22974657-22974676 | Msa0110280:intron | 20.0% |
| ! | GCAACTGAAAAATATATAAG+CGG | + | chr1_3:22969847-22969866 | None:intergenic | 25.0% |
| ! | TAAATGAAATGAAGGCAAAA+TGG | + | chr1_3:22969885-22969904 | None:intergenic | 25.0% |
| ! | GGATAGTATTAAATCTTGTT+TGG | - | chr1_3:22970228-22970247 | Msa0110280:intron | 25.0% |
| !!! | TTTTTTTTTCGGTTTACCAT+AGG | - | chr1_3:22970361-22970380 | Msa0110280:intron | 25.0% |
| ! | ACATAACTTAGTGTAATCAT+AGG | - | chr1_3:22970661-22970680 | Msa0110280:intron | 25.0% |
| ! | CATAACTTAGTGTAATCATA+GGG | - | chr1_3:22970662-22970681 | Msa0110280:intron | 25.0% |
| ! | ATAACTTAGTGTAATCATAG+GGG | - | chr1_3:22970663-22970682 | Msa0110280:intron | 25.0% |
| !!! | GCTTTAAAAACTGAATAACT+AGG | + | chr1_3:22970875-22970894 | None:intergenic | 25.0% |
| ! | AAAATCAGGATAAACATTTG+AGG | - | chr1_3:22970993-22971012 | Msa0110280:intron | 25.0% |
| ! | TTGAAATAACTCAATGCATA+AGG | + | chr1_3:22971071-22971090 | None:intergenic | 25.0% |
| !!! | TTTTATTTCCTAATTTCCAG+CGG | - | chr1_3:22971277-22971296 | Msa0110280:intron | 25.0% |
| ! | AAATGAAGTCTTCTAATCAA+TGG | + | chr1_3:22971645-22971664 | None:intergenic | 25.0% |
| !!! | CTAGTTATTTTTGCTGAAAA+CGG | - | chr1_3:22971673-22971692 | Msa0110280:intron | 25.0% |
| ! | CTTACTAGTGTTAATATACA+AGG | + | chr1_3:22971702-22971721 | None:intergenic | 25.0% |
| !! | TTTTCAAAAACAGAGATAAC+CGG | - | chr1_3:22971730-22971749 | Msa0110280:intron | 25.0% |
| !!! | AAAACTACTTGCTTTAGAAA+AGG | + | chr1_3:22971910-22971929 | None:intergenic | 25.0% |
| ! | CTGAAATATTGGTAAGAAAT+TGG | - | chr1_3:22972106-22972125 | Msa0110280:intron | 25.0% |
| ! | TTGTTTATCAAGATTGTATG+TGG | - | chr1_3:22972414-22972433 | Msa0110280:intron | 25.0% |
| !!! | GTTTATAATTTGCTATTTGC+TGG | - | chr1_3:22972442-22972461 | Msa0110280:intron | 25.0% |
| ! | GAGTAAGAAATATGAAACAT+TGG | - | chr1_3:22972548-22972567 | Msa0110280:intron | 25.0% |
| ! | TAATGATTGCATCAACAAAA+TGG | + | chr1_3:22972653-22972672 | None:intergenic | 25.0% |
| ! | TTGTTGATGCAATCATTAAA+AGG | - | chr1_3:22972655-22972674 | Msa0110280:CDS | 25.0% |
| ! | TAATAAAATGGATGGATCAA+GGG | - | chr1_3:22972865-22972884 | Msa0110280:intron | 25.0% |
| ! | AAGTAAAAGCAGATAAAATG+AGG | + | chr1_3:22972950-22972969 | None:intergenic | 25.0% |
| !!! | TTTTTGAGAAGAAATCAACA+AGG | - | chr1_3:22973019-22973038 | Msa0110280:intron | 25.0% |
| ! | AAGGTAGTATATGAATATGA+AGG | + | chr1_3:22973079-22973098 | None:intergenic | 25.0% |
| ! | ATGGAATCATTTACCTAATA+AGG | + | chr1_3:22973098-22973117 | None:intergenic | 25.0% |
| !!! | CTAAGATTTTTTGTCACTAT+AGG | + | chr1_3:22973161-22973180 | None:intergenic | 25.0% |
| !! | TATTAGCTTATGTGTGTATA+CGG | - | chr1_3:22973197-22973216 | Msa0110280:intron | 25.0% |
| ! | TATTAGCATATGTGTGTATA+CGG | - | chr1_3:22973250-22973269 | Msa0110280:intron | 25.0% |
| ! | AACTTCAATATGAAACTTAC+TGG | + | chr1_3:22974202-22974221 | None:intergenic | 25.0% |
| ! | TAATCTTTGATCATGTTCAT+TGG | - | chr1_3:22974287-22974306 | Msa0110280:intron | 25.0% |
| !!! | TGCAATCTAGCTTTATAAAA+CGG | + | chr1_3:22974418-22974437 | None:intergenic | 25.0% |
| !!! | GTCATGTATCATTTTTTACA+GGG | - | chr1_3:22974591-22974610 | Msa0110280:intron | 25.0% |
| !!! | TCATGTATCATTTTTTACAG+GGG | - | chr1_3:22974592-22974611 | Msa0110280:intron | 25.0% |
| !! | AATAAACTTTTGTAGGATGA+TGG | - | chr1_3:22974792-22974811 | Msa0110280:five_prime_UTR | 25.0% |
| AATGTTTAGAAATGACGAGA+AGG | + | chr1_3:22969702-22969721 | None:intergenic | 30.0% | |
| ACTAATCAATGAGTTACAGA+AGG | - | chr1_3:22969785-22969804 | Msa0110280:three_prime_UTR | 30.0% | |
| GCTTATTTAAGCTTATCTAC+CGG | + | chr1_3:22970013-22970032 | None:intergenic | 30.0% | |
| TTAAATAAGCCAATCCAAAC+AGG | - | chr1_3:22970023-22970042 | Msa0110280:three_prime_UTR | 30.0% | |
| TTCACGATTCATACTGAATA+AGG | + | chr1_3:22970190-22970209 | None:intergenic | 30.0% | |
| GAAATGAAAAGAAGTTGAAG+AGG | - | chr1_3:22970207-22970226 | Msa0110280:intron | 30.0% | |
| CTGAAATCTTGATTGTAAGT+TGG | + | chr1_3:22970262-22970281 | None:intergenic | 30.0% | |
| !! | ATGATTGATTTTTAGGGAGA+AGG | - | chr1_3:22970302-22970321 | Msa0110280:intron | 30.0% |
| !! | TGATTGATTTTTAGGGAGAA+GGG | - | chr1_3:22970303-22970322 | Msa0110280:intron | 30.0% |
| AAAAAAAAAAACTCTCGCAG+CGG | + | chr1_3:22970350-22970369 | None:intergenic | 30.0% | |
| !!! | CTGCGAGAGTTTTTTTTTTT+CGG | - | chr1_3:22970350-22970369 | Msa0110280:intron | 30.0% |
| AATGAGAGAGATAAACACAA+TGG | - | chr1_3:22970417-22970436 | Msa0110280:intron | 30.0% | |
| ATGAGAGAGATAAACACAAT+GGG | - | chr1_3:22970418-22970437 | Msa0110280:intron | 30.0% | |
| AACTGAATAACTAGGAACTA+TGG | + | chr1_3:22970867-22970886 | None:intergenic | 30.0% | |
| GATTCACAAATGATGATACA+GGG | + | chr1_3:22970920-22970939 | None:intergenic | 30.0% | |
| !!! | GTGAATCGATTTTTTACTCT+AGG | - | chr1_3:22970933-22970952 | Msa0110280:intron | 30.0% |
| ! | CTGTTATGTTTCTACAAACT+TGG | - | chr1_3:22971104-22971123 | Msa0110280:intron | 30.0% |
| AATCTGTAGAATCTATTACC+TGG | - | chr1_3:22971152-22971171 | Msa0110280:intron | 30.0% | |
| ATCTGTAGAATCTATTACCT+GGG | - | chr1_3:22971153-22971172 | Msa0110280:intron | 30.0% | |
| AACAGTAGAGGAAAATTCAT+TGG | - | chr1_3:22971180-22971199 | Msa0110280:intron | 30.0% | |
| !! | TTGGTTTAGTTCTGTCAAAT+CGG | - | chr1_3:22971199-22971218 | Msa0110280:intron | 30.0% |
| !! | ACTTGTTGTATGCTATCATA+TGG | - | chr1_3:22971243-22971262 | Msa0110280:intron | 30.0% |
| !! | GGTAAACTTTTAACTCAAGT+TGG | + | chr1_3:22971591-22971610 | None:intergenic | 30.0% |
| TTACTTGATCAACAGTTAAC+AGG | - | chr1_3:22972707-22972726 | Msa0110280:CDS | 30.0% | |
| ATTCCACTGTGAATTCATTA+GGG | - | chr1_3:22972842-22972861 | Msa0110280:intron | 30.0% | |
| CATTAGGGTAATAAAATGGA+TGG | - | chr1_3:22972857-22972876 | Msa0110280:intron | 30.0% | |
| GTAATAAAATGGATGGATCA+AGG | - | chr1_3:22972864-22972883 | Msa0110280:intron | 30.0% | |
| AATAAAATGGATGGATCAAG+GGG | - | chr1_3:22972866-22972885 | Msa0110280:intron | 30.0% | |
| !! | AGCAAAAAGTGAATGGATTA+TGG | + | chr1_3:22973117-22973136 | None:intergenic | 30.0% |
| CCAATTTCTTAAGTTATTGC+AGG | + | chr1_3:22973512-22973531 | None:intergenic | 30.0% | |
| CCTGCAATAACTTAAGAAAT+TGG | - | chr1_3:22973509-22973528 | Msa0110280:intron | 30.0% | |
| AAAAAAAGGGGAAAAGAGAA+GGG | + | chr1_3:22973700-22973719 | None:intergenic | 30.0% | |
| ATAAAACACTGACACAGTTA+CGG | - | chr1_3:22973907-22973926 | Msa0110280:intron | 30.0% | |
| ACCATGACTATCAGAAAAAA+GGG | + | chr1_3:22974175-22974194 | None:intergenic | 30.0% | |
| AACCATGACTATCAGAAAAA+AGG | + | chr1_3:22974176-22974195 | None:intergenic | 30.0% | |
| ! | ATGCTTGGATATTTTACACT+AGG | - | chr1_3:22974385-22974404 | Msa0110280:intron | 30.0% |
| !! | GCAATCTAGCTTTATAAAAC+GGG | + | chr1_3:22974417-22974436 | None:intergenic | 30.0% |
| TATAAAGCTAGATTGCATGA+TGG | - | chr1_3:22974421-22974440 | Msa0110280:intron | 30.0% | |
| !!! | GGTCATGTATCATTTTTTAC+AGG | - | chr1_3:22974590-22974609 | Msa0110280:intron | 30.0% |
| ! | GCATGTCAATAAACTTTTGT+AGG | - | chr1_3:22974785-22974804 | Msa0110280:five_prime_UTR | 30.0% |
| ! | TTGGGTTGTTCTTAGTGATT+AGG | - | chr1_3:22970056-22970075 | Msa0110280:three_prime_UTR | 35.0% |
| !! | TGCTACATCACTATTTCTAC+CGG | + | chr1_3:22970093-22970112 | None:intergenic | 35.0% |
| CGGAATTAGTTACTCCAATT+CGG | + | chr1_3:22970155-22970174 | None:intergenic | 35.0% | |
| GAATAAGGCACATAAATTCG+CGG | + | chr1_3:22970175-22970194 | None:intergenic | 35.0% | |
| !!! | TTTTTTCGGTTTACCATAGG+TGG | - | chr1_3:22970364-22970383 | Msa0110280:intron | 35.0% |
| GACAGTAGATGAAGTAAATC+CGG | + | chr1_3:22970393-22970412 | None:intergenic | 35.0% | |
| GTGTTTATCTCTCTCATTGA+TGG | + | chr1_3:22970415-22970434 | None:intergenic | 35.0% | |
| TGAGAGAGATAAACACAATG+GGG | - | chr1_3:22970419-22970438 | Msa0110280:intron | 35.0% | |
| GACACAAGTGATAGATTAGT+GGG | + | chr1_3:22970489-22970508 | None:intergenic | 35.0% | |
| TGACACAAGTGATAGATTAG+TGG | + | chr1_3:22970490-22970509 | None:intergenic | 35.0% | |
| TTGTGTCAATCTCTCGTTTA+TGG | - | chr1_3:22970502-22970521 | Msa0110280:intron | 35.0% | |
| ! | GTTTGGATTTGCTCCATTTA+CGG | + | chr1_3:22970529-22970548 | None:intergenic | 35.0% |
| CTTGTAGGTAATCCTATTAG+AGG | - | chr1_3:22970552-22970571 | Msa0110280:intron | 35.0% | |
| TATTTGCATCCGTGCTTTAT+AGG | + | chr1_3:22970589-22970608 | None:intergenic | 35.0% | |
| ATAAAGCACGGATGCAAATA+TGG | - | chr1_3:22970589-22970608 | Msa0110280:intron | 35.0% | |
| AGGAACTATGGAAAACCAAT+GGG | + | chr1_3:22970855-22970874 | None:intergenic | 35.0% | |
| TAGGAACTATGGAAAACCAA+TGG | + | chr1_3:22970856-22970875 | None:intergenic | 35.0% | |
| CGATTCACAAATGATGATAC+AGG | + | chr1_3:22970921-22970940 | None:intergenic | 35.0% | |
| TGTCTTGACACATGTACATA+TGG | - | chr1_3:22971129-22971148 | Msa0110280:intron | 35.0% | |
| TCTGTAGAATCTATTACCTG+GGG | - | chr1_3:22971154-22971173 | Msa0110280:intron | 35.0% | |
| !! | TGGTTTAGTTCTGTCAAATC+GGG | - | chr1_3:22971200-22971219 | Msa0110280:intron | 35.0% |
| AAATCTGCGATTGCAAATCA+AGG | - | chr1_3:22971403-22971422 | Msa0110280:intron | 35.0% | |
| CAAATATTCAATCACGCTCA+TGG | + | chr1_3:22971549-22971568 | None:intergenic | 35.0% | |
| CATGAGCGTGATTGAATATT+TGG | - | chr1_3:22971547-22971566 | Msa0110280:intron | 35.0% | |
| !! | TAACTCAAGTTGGTTCTCAA+CGG | + | chr1_3:22971581-22971600 | None:intergenic | 35.0% |
| !! | TCCAGATCATCACTTTTAGA+TGG | - | chr1_3:22971756-22971775 | Msa0110280:CDS | 35.0% |
| ACCATCTAAAAGTGATGATC+TGG | + | chr1_3:22971760-22971779 | None:intergenic | 35.0% | |
| ! | TTTAGATGGTCTTGATAGTC+TGG | - | chr1_3:22971770-22971789 | Msa0110280:CDS | 35.0% |
| ACACTTTAGTGCATTGAAGT+TGG | - | chr1_3:22972017-22972036 | Msa0110280:intron | 35.0% | |
| TAAGAAATTGGTTGCTCTGT+TGG | - | chr1_3:22972118-22972137 | Msa0110280:intron | 35.0% | |
| !! | CTGTTGGACTGTTTCTAATT+TGG | - | chr1_3:22972134-22972153 | Msa0110280:intron | 35.0% |
| GTAGATAAAAGGCCATCAAA+AGG | - | chr1_3:22972347-22972366 | Msa0110280:intron | 35.0% | |
| ! | GAATTCTCAAAGCCTTTTGA+TGG | + | chr1_3:22972362-22972381 | None:intergenic | 35.0% |
| ! | TGAGAATTCATGTTTGTTGC+AGG | - | chr1_3:22972373-22972392 | Msa0110280:intron | 35.0% |
| ATCAAGATTGTATGTGGACA+TGG | - | chr1_3:22972420-22972439 | Msa0110280:intron | 35.0% | |
| TCAGAAATTATGCAGCCTAT+TGG | - | chr1_3:22972594-22972613 | Msa0110280:intron | 35.0% | |
| ACTATGCTCTGTAATCCAAT+AGG | + | chr1_3:22972612-22972631 | None:intergenic | 35.0% | |
| GTTAACAGGTGATATACATG+AGG | - | chr1_3:22972721-22972740 | Msa0110280:CDS | 35.0% | |
| GATTCCACTGTGAATTCATT+AGG | - | chr1_3:22972841-22972860 | Msa0110280:intron | 35.0% | |
| TTACCCTAATGAATTCACAG+TGG | + | chr1_3:22972848-22972867 | None:intergenic | 35.0% | |
| GTGTCAAAGCAAAAAGTGAA+TGG | + | chr1_3:22973124-22973143 | None:intergenic | 35.0% | |
| AAGCTAATATCATTGCAGAC+AGG | + | chr1_3:22973186-22973205 | None:intergenic | 35.0% | |
| ATGCTAATATCATTGCAGAC+AGG | + | chr1_3:22973239-22973258 | None:intergenic | 35.0% | |
| ! | ATTGTGTTGGTATCAAACAC+CGG | - | chr1_3:22973562-22973581 | Msa0110280:intron | 35.0% |
| ATTTGATAGGTACATGCACA+AGG | - | chr1_3:22973631-22973650 | Msa0110280:intron | 35.0% | |
| AAAAAAGGGGAAAAGAGAAG+GGG | + | chr1_3:22973699-22973718 | None:intergenic | 35.0% | |
| CAAAAAAAGGGGAAAAGAGA+AGG | + | chr1_3:22973701-22973720 | None:intergenic | 35.0% | |
| !!! | TCTTTTCCCCTTTTTTTGAC+AGG | - | chr1_3:22973703-22973722 | Msa0110280:intron | 35.0% |
| CAAGTACCTGTCAAAAAAAG+GGG | + | chr1_3:22973712-22973731 | None:intergenic | 35.0% | |
| GCAAGTACCTGTCAAAAAAA+GGG | + | chr1_3:22973713-22973732 | None:intergenic | 35.0% | |
| TGCAAGTACCTGTCAAAAAA+AGG | + | chr1_3:22973714-22973733 | None:intergenic | 35.0% | |
| TATTGCATCTGTCTACATGT+CGG | + | chr1_3:22973954-22973973 | None:intergenic | 35.0% | |
| GATACTATTACTGACACATG+TGG | + | chr1_3:22974007-22974026 | None:intergenic | 35.0% | |
| AAAAAAGGGGAAAAGAGAAG+GGG | + | chr1_3:22973699-22973718 | None:intergenic | 35.0% | |
| GAAAAAAGGGGAAAAGAGAA+GGG | + | chr1_3:22974162-22974181 | None:intergenic | 35.0% | |
| AGAAAAAAGGGGAAAAGAGA+AGG | + | chr1_3:22974163-22974182 | None:intergenic | 35.0% | |
| CCATGACTATCAGAAAAAAG+GGG | + | chr1_3:22974174-22974193 | None:intergenic | 35.0% | |
| GAATCAACATCTGTATTCAG+TGG | + | chr1_3:22974231-22974250 | None:intergenic | 35.0% | |
| ! | TTTTACAGCACATGAACAAC+AGG | + | chr1_3:22974464-22974483 | None:intergenic | 35.0% |
| TTCATGTGCTGTAAAATGTC+CGG | - | chr1_3:22974468-22974487 | Msa0110280:intron | 35.0% | |
| AAATGATACATGACCATGTG+AGG | + | chr1_3:22974585-22974604 | None:intergenic | 35.0% | |
| AAGAACAACCCAACCACTAA+AGG | + | chr1_3:22970049-22970068 | None:intergenic | 40.0% | |
| TTCAACTCGTTCAACCGAAT+TGG | - | chr1_3:22970138-22970157 | Msa0110280:intron | 40.0% | |
| AAACACAATGGGGAGATTAG+TGG | - | chr1_3:22970429-22970448 | Msa0110280:intron | 40.0% | |
| AACACAATGGGGAGATTAGT+GGG | - | chr1_3:22970430-22970449 | Msa0110280:intron | 40.0% | |
| AGATTAGTGGGATCCATTAG+TGG | - | chr1_3:22970442-22970461 | Msa0110280:intron | 40.0% | |
| GATTAGTGGGATCCATTAGT+GGG | - | chr1_3:22970443-22970462 | Msa0110280:intron | 40.0% | |
| ATTAGTGGGATCCATTAGTG+GGG | - | chr1_3:22970444-22970463 | Msa0110280:intron | 40.0% | |
| !! | GTGGGACTCATTTTAACAAG+TGG | + | chr1_3:22970471-22970490 | None:intergenic | 40.0% |
| TCTCGTTTATGGACCGTAAA+TGG | - | chr1_3:22970513-22970532 | Msa0110280:intron | 40.0% | |
| GCAAATCCAAACTCTCTTGT+AGG | - | chr1_3:22970537-22970556 | Msa0110280:intron | 40.0% | |
| GGATTACCTACAAGAGAGTT+TGG | + | chr1_3:22970546-22970565 | None:intergenic | 40.0% | |
| ! | AATCCTATTAGAGGTGTGTG+TGG | - | chr1_3:22970561-22970580 | Msa0110280:intron | 40.0% |
| ! | ATCCTATTAGAGGTGTGTGT+GGG | - | chr1_3:22970562-22970581 | Msa0110280:intron | 40.0% |
| ATACAACATGGACACTGACA+CGG | - | chr1_3:22970619-22970638 | Msa0110280:intron | 40.0% | |
| ATAGTGTGGGACACTAAATG+TGG | - | chr1_3:22970757-22970776 | Msa0110280:intron | 40.0% | |
| GAAAAGGTTCAAATTCCAGC+TGG | + | chr1_3:22970791-22970810 | None:intergenic | 40.0% | |
| GAACTATGGAAAACCAATGG+GGG | + | chr1_3:22970853-22970872 | None:intergenic | 40.0% | |
| GGAACTATGGAAAACCAATG+GGG | + | chr1_3:22970854-22970873 | None:intergenic | 40.0% | |
| CTGTAGAATCTATTACCTGG+GGG | - | chr1_3:22971155-22971174 | Msa0110280:intron | 40.0% | |
| TGTAGAATCTATTACCTGGG+GGG | - | chr1_3:22971156-22971175 | Msa0110280:intron | 40.0% | |
| TCATGATACCGCTGGAAATT+AGG | + | chr1_3:22971288-22971307 | None:intergenic | 40.0% | |
| ATATTCAATCACGCTCATGG+TGG | + | chr1_3:22971546-22971565 | None:intergenic | 40.0% | |
| AAAGTGATGATCTGGATGAC+CGG | + | chr1_3:22971752-22971771 | None:intergenic | 40.0% | |
| ! | CGGATCACTTGCTGAAATAT+TGG | - | chr1_3:22972095-22972114 | Msa0110280:intron | 40.0% |
| AACAGGTGATATACATGAGG+AGG | - | chr1_3:22972724-22972743 | Msa0110280:CDS | 40.0% | |
| GTCATAACAGTATGCTCGAT+CGG | - | chr1_3:22972753-22972772 | Msa0110280:CDS | 40.0% | |
| TCATAACAGTATGCTCGATC+GGG | - | chr1_3:22972754-22972773 | Msa0110280:CDS | 40.0% | |
| ! | AACCATGGATCGATTCAAGA+AGG | - | chr1_3:22972901-22972920 | Msa0110280:intron | 40.0% |
| TACCTTCTTGAATCGATCCA+TGG | + | chr1_3:22972906-22972925 | None:intergenic | 40.0% | |
| AAGGAAAACATGCTCACTTG+TGG | - | chr1_3:22973038-22973057 | Msa0110280:intron | 40.0% | |
| AGGAAAACATGCTCACTTGT+GGG | - | chr1_3:22973039-22973058 | Msa0110280:intron | 40.0% | |
| !! | CAGACAGGTTCTAAGATTCT+CGG | + | chr1_3:22973224-22973243 | None:intergenic | 40.0% |
| !! | CTAAAGCACTGACACAGTTA+CGG | - | chr1_3:22973451-22973470 | Msa0110280:intron | 40.0% |
| CAACACAATACTGACACATG+TGG | + | chr1_3:22973551-22973570 | None:intergenic | 40.0% | |
| CACATGTGTCAGTATTGTGT+TGG | - | chr1_3:22973549-22973568 | Msa0110280:intron | 40.0% | |
| AAAAAGGGGAAAAGAGAAGG+GGG | + | chr1_3:22973698-22973717 | None:intergenic | 40.0% | |
| ! | ATCGTGTTGATGTCAAACAC+CGG | - | chr1_3:22974024-22974043 | Msa0110280:intron | 40.0% |
| AAAAAGGGGAAAAGAGAAGG+GGG | + | chr1_3:22973698-22973717 | None:intergenic | 40.0% | |
| !!! | CCCCTTTTTTCTGATAGTCA+TGG | - | chr1_3:22974171-22974190 | Msa0110280:intron | 40.0% |
| TAGATTGCATGATGGTCGTT+TGG | - | chr1_3:22974429-22974448 | Msa0110280:intron | 40.0% | |
| AGTTTCAAACCACATGCCAA+CGG | + | chr1_3:22974496-22974515 | None:intergenic | 40.0% | |
| TCCATGACAATGGTGTGTTT+GGG | + | chr1_3:22974715-22974734 | None:intergenic | 40.0% | |
| ATCCATGACAATGGTGTGTT+TGG | + | chr1_3:22974716-22974735 | None:intergenic | 40.0% | |
| ! | TTATCTGGGATCCATGACAA+TGG | + | chr1_3:22974725-22974744 | None:intergenic | 40.0% |
| CATGTGATTCCAGCTTATCT+GGG | + | chr1_3:22974739-22974758 | None:intergenic | 40.0% | |
| AGTCTCACACATGCTTATGC+CGG | - | chr1_3:22969991-22970010 | Msa0110280:three_prime_UTR | 45.0% | |
| CACTAAAGGCCTGTTTGGAT+TGG | + | chr1_3:22970035-22970054 | None:intergenic | 45.0% | |
| CAATCCAAACAGGCCTTTAG+TGG | - | chr1_3:22970033-22970052 | Msa0110280:three_prime_UTR | 45.0% | |
| CAAACAGGCCTTTAGTGGTT+GGG | - | chr1_3:22970038-22970057 | Msa0110280:three_prime_UTR | 45.0% | |
| ! | TGATTAGGTTGTGCTTGTGC+CGG | - | chr1_3:22970071-22970090 | Msa0110280:three_prime_UTR | 45.0% |
| TAACAAGTGGACCCCACTAA+TGG | + | chr1_3:22970458-22970477 | None:intergenic | 45.0% | |
| TGTGTGGGACCTATAAAGCA+CGG | - | chr1_3:22970577-22970596 | Msa0110280:intron | 45.0% | |
| ACGGATGCAAATATGGACAC+CGG | - | chr1_3:22970596-22970615 | Msa0110280:intron | 45.0% | |
| TATGGACACCGGATACAACA+TGG | - | chr1_3:22970607-22970626 | Msa0110280:intron | 45.0% | |
| GTCAGTGTCCATGTTGTATC+CGG | + | chr1_3:22970618-22970637 | None:intergenic | 45.0% | |
| TGTAATCATAGGGGTCGTGT+TGG | - | chr1_3:22970672-22970691 | Msa0110280:intron | 45.0% | |
| GATTAGGTGTATCCCAGTGT+CGG | + | chr1_3:22970718-22970737 | None:intergenic | 45.0% | |
| !! | TATGAAGCACTGACACTGCT+CGG | + | chr1_3:22970740-22970759 | None:intergenic | 45.0% |
| AGTGTCAGTGCTTCATAGTG+TGG | - | chr1_3:22970743-22970762 | Msa0110280:intron | 45.0% | |
| GTGTCAGTGCTTCATAGTGT+GGG | - | chr1_3:22970744-22970763 | Msa0110280:intron | 45.0% | |
| AATGTGGTAACTCTTCCAGC+TGG | - | chr1_3:22970773-22970792 | Msa0110280:intron | 45.0% | |
| ATGGAAAACCAATGGGGGTT+GGG | + | chr1_3:22970848-22970867 | None:intergenic | 45.0% | |
| TATGGAAAACCAATGGGGGT+TGG | + | chr1_3:22970849-22970868 | None:intergenic | 45.0% | |
| CATTAGACTCATGATACCGC+TGG | + | chr1_3:22971296-22971315 | None:intergenic | 45.0% | |
| ! | AGATGGTCTTGATAGTCTGG+AGG | - | chr1_3:22971773-22971792 | Msa0110280:CDS | 45.0% |
| AATGCCATAGACACTCTGCA+CGG | - | chr1_3:22971855-22971874 | Msa0110280:intron | 45.0% | |
| ATATGTTGCCATGTCGCAAC+TGG | - | chr1_3:22972487-22972506 | Msa0110280:intron | 45.0% | |
| ! | TGGATCAAGGGGTATGATGT+TGG | - | chr1_3:22972877-22972896 | Msa0110280:intron | 45.0% |
| ! | GGATCAAGGGGTATGATGTT+GGG | - | chr1_3:22972878-22972897 | Msa0110280:intron | 45.0% |
| TTCACACAGTCATGCGTTCT+AGG | - | chr1_3:22973310-22973329 | Msa0110280:intron | 45.0% | |
| ! | CTGTAGAACAAAGGCATGTC+CGG | + | chr1_3:22973584-22973603 | None:intergenic | 45.0% |
| GCACAGACACTGTAGAACAA+AGG | + | chr1_3:22973593-22973612 | None:intergenic | 45.0% | |
| GATAGGTACATGCACAAGGT+AGG | - | chr1_3:22973635-22973654 | Msa0110280:intron | 45.0% | |
| TTCACGCTGTCATGTGTTCT+TGG | - | chr1_3:22973765-22973784 | Msa0110280:intron | 45.0% | |
| GTTCTTGGCCATCTGATCAA+TGG | - | chr1_3:22973780-22973799 | Msa0110280:intron | 45.0% | |
| TGATGTTAAATCACGACGCC+TGG | + | chr1_3:22973806-22973825 | None:intergenic | 45.0% | |
| ! | CTGTAGAACAAAGGTGTGTC+CGG | + | chr1_3:22974046-22974065 | None:intergenic | 45.0% |
| GCACAGACACTGTAGAACAA+AGG | + | chr1_3:22973593-22973612 | None:intergenic | 45.0% | |
| ATTTGATAGGTGCATGCGCA+AGG | - | chr1_3:22974093-22974112 | Msa0110280:intron | 45.0% | |
| TGTAAAATGTCCGGAACCGT+TGG | - | chr1_3:22974477-22974496 | Msa0110280:intron | 45.0% | |
| GTTTACTTTCCCTCCTCACA+TGG | - | chr1_3:22974569-22974588 | Msa0110280:intron | 45.0% | |
| GATACATGACCATGTGAGGA+GGG | + | chr1_3:22974581-22974600 | None:intergenic | 45.0% | |
| TGATACATGACCATGTGAGG+AGG | + | chr1_3:22974582-22974601 | None:intergenic | 45.0% | |
| TCCCAAACACACCATTGTCA+TGG | - | chr1_3:22974711-22974730 | Msa0110280:exon | 45.0% | |
| CCATGTGATTCCAGCTTATC+TGG | + | chr1_3:22974740-22974759 | None:intergenic | 45.0% | |
| CCAGATAAGCTGGAATCACA+TGG | - | chr1_3:22974737-22974756 | Msa0110280:five_prime_UTR | 45.0% | |
| CCAACCACTAAAGGCCTGTT+TGG | + | chr1_3:22970040-22970059 | None:intergenic | 50.0% | |
| CCAAACAGGCCTTTAGTGGT+TGG | - | chr1_3:22970037-22970056 | Msa0110280:three_prime_UTR | 50.0% | |
| GGTTTACCATAGGTGGAGTC+CGG | - | chr1_3:22970371-22970390 | Msa0110280:intron | 50.0% | |
| GTAAATCCGGACTCCACCTA+TGG | + | chr1_3:22970380-22970399 | None:intergenic | 50.0% | |
| GTCCCACACACACCTCTAAT+AGG | + | chr1_3:22970567-22970586 | None:intergenic | 50.0% | |
| ! | TGAACCTTTTCGCCAAGCTG+TGG | - | chr1_3:22970800-22970819 | Msa0110280:intron | 50.0% |
| ! | GAACCTTTTCGCCAAGCTGT+GGG | - | chr1_3:22970801-22970820 | Msa0110280:intron | 50.0% |
| ! | TGGTCTTGATAGTCTGGAGG+AGG | - | chr1_3:22971776-22971795 | Msa0110280:CDS | 50.0% |
| ! | GGTCTTGATAGTCTGGAGGA+GGG | - | chr1_3:22971777-22971796 | Msa0110280:intron | 50.0% |
| TCTGGAGGAGGGTGGTTTAA+GGG | - | chr1_3:22971788-22971807 | Msa0110280:intron | 50.0% | |
| TAACAGTATGCTCGATCGGG+TGG | - | chr1_3:22972757-22972776 | Msa0110280:intron | 50.0% | |
| GGGTATGATGTTGGGAACCA+TGG | - | chr1_3:22972886-22972905 | Msa0110280:intron | 50.0% | |
| TTGCAGACTGCAGTCGATCT+CGG | + | chr1_3:22973277-22973296 | None:intergenic | 50.0% | |
| ! | CGTTCTAGGCCATCTGATCA+TGG | - | chr1_3:22973324-22973343 | Msa0110280:intron | 50.0% |
| GCCATCTGATCATGGTCAGA+CGG | - | chr1_3:22973332-22973351 | Msa0110280:intron | 50.0% | |
| ACCGTCTGACCATGATCAGA+TGG | + | chr1_3:22973336-22973355 | None:intergenic | 50.0% | |
| AACACATGACAGCGTGAACG+CGG | + | chr1_3:22973763-22973782 | None:intergenic | 50.0% | |
| ! | CGGTGTCAGTATAGTGTCTG+AGG | + | chr1_3:22973934-22973953 | None:intergenic | 50.0% |
| TGCAAACTCGCACACTTTGC+AGG | - | chr1_3:22974362-22974381 | Msa0110280:intron | 50.0% | |
| AAACCACATGCCAACGGTTC+CGG | + | chr1_3:22974490-22974509 | None:intergenic | 50.0% | |
| GTCATGGATCCCAGATAAGC+TGG | - | chr1_3:22974727-22974746 | Msa0110280:five_prime_UTR | 50.0% | |
| ! | CATAGGGGTCGTGTTGGTGT+CGG | - | chr1_3:22970678-22970697 | Msa0110280:intron | 55.0% |
| ! | GCACTGACACTGCTCGGATT+AGG | + | chr1_3:22970734-22970753 | None:intergenic | 55.0% |
| ACTCCCACAGCTTGGCGAAA+AGG | + | chr1_3:22970807-22970826 | None:intergenic | 55.0% | |
| GGGGTTGGGTCTAGCAAAAG+GGG | + | chr1_3:22970834-22970853 | None:intergenic | 55.0% | |
| GGGGGTTGGGTCTAGCAAAA+GGG | + | chr1_3:22970835-22970854 | None:intergenic | 55.0% | |
| TGGGGGTTGGGTCTAGCAAA+AGG | + | chr1_3:22970836-22970855 | None:intergenic | 55.0% | |
| TTGCTAGACCCAACCCCCAT+TGG | - | chr1_3:22970837-22970856 | Msa0110280:intron | 55.0% | |
| TACCTGGGGGGAAACAGTAG+AGG | - | chr1_3:22971168-22971187 | Msa0110280:intron | 55.0% | |
| TTCCTCTACTGTTTCCCCCC+AGG | + | chr1_3:22971173-22971192 | None:intergenic | 55.0% | |
| ! | CTTGATAGTCTGGAGGAGGG+TGG | - | chr1_3:22971780-22971799 | Msa0110280:intron | 55.0% |
| GTCTGGAGGAGGGTGGTTTA+AGG | - | chr1_3:22971787-22971806 | Msa0110280:intron | 55.0% | |
| ! | TCTGCCGTGCAGAGTGTCTA+TGG | + | chr1_3:22971862-22971881 | None:intergenic | 55.0% |
| GTAGCATGCCAGTTGCGACA+TGG | + | chr1_3:22972498-22972517 | None:intergenic | 55.0% | |
| TGGCCATCTGATCAATGGCC+AGG | - | chr1_3:22973785-22973804 | Msa0110280:intron | 55.0% | |
| ACGCCTGGCCATTGATCAGA+TGG | + | chr1_3:22973791-22973810 | None:intergenic | 55.0% | |
| CGCACACTTTGCAGGATGCT+TGG | - | chr1_3:22974370-22974389 | Msa0110280:intron | 55.0% | |
| TCCGACACGTGTCCGACACT+GGG | - | chr1_3:22970703-22970722 | Msa0110280:intron | 60.0% | |
| ! | TCCCAGTGTCGGACACGTGT+CGG | + | chr1_3:22970707-22970726 | None:intergenic | 60.0% |
| TGTCCGGAACCGTTGGCATG+TGG | - | chr1_3:22974484-22974503 | Msa0110280:intron | 60.0% | |
| CTCCGACACGTGTCCGACAC+TGG | - | chr1_3:22970702-22970721 | Msa0110280:intron | 65.0% | |
| GGGGCTAGACTCCCACAGCT+TGG | + | chr1_3:22970815-22970834 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 22969666 | 22974851 | 22969666 | ID=Msa0110280;Name=Msa0110280 |
| chr1_3 | mRNA | 22969666 | 22974851 | 22969666 | ID=Msa0110280-mRNA-1;Parent=Msa0110280;Name=Msa0110280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=127|1|1|1|0.6|0.5|6|440|133 |
| chr1_3 | exon | 22969666 | 22970133 | 22969666 | ID=Msa0110280-mRNA-1:exon:8092;Parent=Msa0110280-mRNA-1 |
| chr1_3 | exon | 22971414 | 22971499 | 22971414 | ID=Msa0110280-mRNA-1:exon:8091;Parent=Msa0110280-mRNA-1 |
| chr1_3 | exon | 22971595 | 22971654 | 22971595 | ID=Msa0110280-mRNA-1:exon:8090;Parent=Msa0110280-mRNA-1 |
| chr1_3 | exon | 22971739 | 22971795 | 22971739 | ID=Msa0110280-mRNA-1:exon:8089;Parent=Msa0110280-mRNA-1 |
| chr1_3 | exon | 22972618 | 22972774 | 22972618 | ID=Msa0110280-mRNA-1:exon:8088;Parent=Msa0110280-mRNA-1 |
| chr1_3 | exon | 22974711 | 22974851 | 22974711 | ID=Msa0110280-mRNA-1:exon:8087;Parent=Msa0110280-mRNA-1 |
| chr1_3 | five_prime_UTR | 22974725 | 22974851 | 22974725 | ID=Msa0110280-mRNA-1:five_prime_utr;Parent=Msa0110280-mRNA-1 |
| chr1_3 | CDS | 22974711 | 22974724 | 22974711 | ID=Msa0110280-mRNA-1:cds;Parent=Msa0110280-mRNA-1 |
| chr1_3 | CDS | 22972618 | 22972774 | 22972618 | ID=Msa0110280-mRNA-1:cds;Parent=Msa0110280-mRNA-1 |
| chr1_3 | CDS | 22971739 | 22971795 | 22971739 | ID=Msa0110280-mRNA-1:cds;Parent=Msa0110280-mRNA-1 |
| chr1_3 | CDS | 22971595 | 22971654 | 22971595 | ID=Msa0110280-mRNA-1:cds;Parent=Msa0110280-mRNA-1 |
| chr1_3 | CDS | 22971414 | 22971499 | 22971414 | ID=Msa0110280-mRNA-1:cds;Parent=Msa0110280-mRNA-1 |
| chr1_3 | CDS | 22970106 | 22970133 | 22970106 | ID=Msa0110280-mRNA-1:cds;Parent=Msa0110280-mRNA-1 |
| chr1_3 | three_prime_UTR | 22969666 | 22970105 | 22969666 | ID=Msa0110280-mRNA-1:three_prime_utr;Parent=Msa0110280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
