AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167980 MtrunA17_Chr1g0184301 83.465 127 1 1 1 107 1 127 1.98e-62 186
Msa0167980 MtrunA17_Chr1g0168091 50.000 112 32 2 16 107 18 125 6.15e-29 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167980 AT3G58170.1 62.698 126 23 2 2 107 1 122 2.38e-47 148
Msa0167980 AT4G14455.1 47.287 129 39 3 2 107 1 123 5.22e-32 109

Find 39 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGCAACTCTGTTGTTTC+GGG 0.248402 1_4:+50226792 None:intergenic
GTGCATAAGTAAAGGTTCTT+TGG 0.278035 1_4:+50228181 None:intergenic
AAAGAGCAACTCTGTTGTTT+CGG 0.302142 1_4:+50226791 None:intergenic
CAATGGATGGATTGCAAGAT+AGG 0.310657 1_4:-50226678 Msa0167980:CDS
TATCATGCTCATCAATTTCA+TGG 0.334184 1_4:+50226710 None:intergenic
GCATGCTTCATCCTTCAGTT+TGG 0.357420 1_4:-50224809 Msa0167980:three_prime_UTR
GAAGGATGAAGCATGCATAA+AGG 0.391954 1_4:+50224816 None:intergenic
TTACTTATGCACAGAACAAC+AGG 0.419198 1_4:-50228170 Msa0167980:intron
TAACCGCATGCTGGATCATA+TGG 0.436740 1_4:-50225692 Msa0167980:intron
AAGGATGAAGCATGCATAAA+GGG 0.441495 1_4:+50224817 None:intergenic
GATCGAGTGAATCCGTGATC+TGG 0.450210 1_4:-50228038 Msa0167980:five_prime_UTR
AGTGAAGGAGAGATAGAAAG+AGG 0.457757 1_4:+50228204 None:intergenic
GAGATATGATGAATTCTAGA+AGG 0.474589 1_4:-50228005 Msa0167980:intron
CAGTGAGAACATTCTTCGGC+TGG 0.475781 1_4:+50225131 None:intergenic
TTATCATTTACTATCTAACT+AGG 0.482678 1_4:-50225083 Msa0167980:CDS
CTACCAGTGAGAACATTCTT+CGG 0.486049 1_4:+50225127 None:intergenic
GTCTGTTTGCAACAGCTGTC+AGG 0.490064 1_4:-50225742 Msa0167980:intron
GTAAAGGTTCTTTGGAGTGA+AGG 0.497314 1_4:+50228189 None:intergenic
GTTGTTCTGTGCATAAGTAA+AGG 0.505706 1_4:+50228173 None:intergenic
ATCTTTATACAGACACATAA+CGG 0.530566 1_4:+50224967 None:intergenic
GGATAATCATAACCGCATGC+TGG 0.533691 1_4:-50225701 Msa0167980:CDS
TTTGATGGTATTGAGGAGGG+TGG 0.537955 1_4:-50226769 Msa0167980:CDS
GATAATGAACAAGCAATGGA+TGG 0.545746 1_4:-50226691 Msa0167980:CDS
CAATGAATGATAAGAACACT+TGG 0.549968 1_4:-50224741 Msa0167980:three_prime_UTR
ATCATGCTCATCAATTTCAT+GGG 0.551837 1_4:+50226711 None:intergenic
ATGAAAGCTTTCCAAACTGA+AGG 0.557022 1_4:+50224798 None:intergenic
TTGATGTTGAATCTGAAAGA+AGG 0.558532 1_4:-50225037 Msa0167980:three_prime_UTR
AGGTGATATACATGAGGAGG+TGG 0.560404 1_4:-50225722 Msa0167980:CDS
AATGGATGGATTGCAAGATA+GGG 0.574154 1_4:-50226677 Msa0167980:CDS
CAGCCGAAGAATGTTCTCAC+TGG 0.576953 1_4:-50225130 Msa0167980:CDS
CGAGTGAATCCGTGATCTGG+TGG 0.588577 1_4:-50228035 Msa0167980:five_prime_UTR
AATCCGTGATCTGGTGGTGG+TGG 0.598793 1_4:-50228029 Msa0167980:five_prime_UTR
GCATGATAATGAACAAGCAA+TGG 0.600126 1_4:-50226695 Msa0167980:CDS
GTGAATCCGTGATCTGGTGG+TGG 0.622641 1_4:-50228032 Msa0167980:five_prime_UTR
TCACCACCACCACCAGATCA+CGG 0.632812 1_4:+50228026 None:intergenic
AATTTCATGGGAAGAAGCTG+AGG 0.635387 1_4:+50226723 None:intergenic
GTCAGGTGATATACATGAGG+AGG 0.657694 1_4:-50225725 Msa0167980:CDS
GCTGTCAGGTGATATACATG+AGG 0.690650 1_4:-50225728 Msa0167980:CDS
ACACCATATGATCCAGCATG+CGG 0.718029 1_4:+50225689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATCAATTAATTAATCT+TGG + chr1_4:50224977-50224996 None:intergenic 10.0%
!! ATGTAATAATAATCGATAAT+AGG - chr1_4:50225620-50225639 Msa0167980:intron 15.0%
!! CTGTAATTATAATATCTATT+TGG - chr1_4:50227034-50227053 Msa0167980:intron 15.0%
!!! AATATTTAATTTTCTGTGTA+TGG - chr1_4:50227769-50227788 Msa0167980:intron 15.0%
!!! GTTGTTATTCAATTTGATTA+TGG - chr1_4:50225056-50225075 Msa0167980:three_prime_UTR 20.0%
!! TCAAAATTATTCTTACTCTT+TGG + chr1_4:50225267-50225286 None:intergenic 20.0%
!! GAAACAATATCATATAAACA+AGG + chr1_4:50226467-50226486 None:intergenic 20.0%
!!! TTATATGATATTGTTTCTGT+TGG - chr1_4:50226470-50226489 Msa0167980:intron 20.0%
!!! TATATGATATTGTTTCTGTT+GGG - chr1_4:50226471-50226490 Msa0167980:intron 20.0%
!!! AGTGTTTTATTGAATGTAAA+TGG + chr1_4:50226881-50226900 None:intergenic 20.0%
!! ATGAATAATTCTGATAAACA+TGG + chr1_4:50226968-50226987 None:intergenic 20.0%
!! ATTAAATATTTGATCCTAAG+AGG + chr1_4:50227759-50227778 None:intergenic 20.0%
!! TTATCATTTACTATCTAACT+AGG - chr1_4:50227867-50227886 Msa0167980:intron 20.0%
! CAATAAATCACACATATCAA+CGG + chr1_4:50225118-50225137 None:intergenic 25.0%
! GTTCACTTTCTTTGTATTAT+TGG - chr1_4:50225439-50225458 Msa0167980:intron 25.0%
! TGTATTATTGGTGGAAAATT+AGG - chr1_4:50225451-50225470 Msa0167980:intron 25.0%
! GTATTATTGGTGGAAAATTA+GGG - chr1_4:50225452-50225471 Msa0167980:intron 25.0%
!!! TCTTCTCTATTCATTTTTGT+TGG + chr1_4:50225552-50225571 None:intergenic 25.0%
! AACAAAAATGAATAGAGAAG+AGG - chr1_4:50225551-50225570 Msa0167980:intron 25.0%
! ATTAGATTGAATATATGAGC+AGG - chr1_4:50225654-50225673 Msa0167980:intron 25.0%
!! ACAAATTTGTCACAATTTTG+AGG - chr1_4:50225720-50225739 Msa0167980:CDS 25.0%
!!! ATACAAGGAAGTATTCATAT+CGG + chr1_4:50225762-50225781 None:intergenic 25.0%
!! TTCTAAGAGAGTAATATCTT+CGG + chr1_4:50225940-50225959 None:intergenic 25.0%
!! CTTGATATTTTGTGCAATTA+TGG - chr1_4:50225997-50226016 Msa0167980:intron 25.0%
! GAAAATAGTAAAATCCAATG+TGG + chr1_4:50226104-50226123 None:intergenic 25.0%
!!! TCGTTTTTGGTTTATTAGAA+TGG - chr1_4:50226525-50226544 Msa0167980:intron 25.0%
! TAAATAGTCTACAGGAAAAA+GGG + chr1_4:50227069-50227088 None:intergenic 25.0%
! TTAAATAGTCTACAGGAAAA+AGG + chr1_4:50227070-50227089 None:intergenic 25.0%
! AAGATCTTTAAATAGTCTAC+AGG + chr1_4:50227077-50227096 None:intergenic 25.0%
! AGTTAAAGCAGAAAAAGAAA+AGG + chr1_4:50227328-50227347 None:intergenic 25.0%
! TATCTGTTGGTATTTATGTA+GGG - chr1_4:50227347-50227366 Msa0167980:intron 25.0%
! AACTATGGACAAATTCAAAA+TGG - chr1_4:50227406-50227425 Msa0167980:intron 25.0%
!!! ATGTTTATATGACGGATTTA+TGG - chr1_4:50227569-50227588 Msa0167980:intron 25.0%
!! TTTTGCTTTCCTTTATTGTT+TGG - chr1_4:50227693-50227712 Msa0167980:intron 25.0%
! TTTGCTTTCCTTTATTGTTT+GGG - chr1_4:50227694-50227713 Msa0167980:intron 25.0%
! GATAAGAAAAATCACAACAA+AGG + chr1_4:50227852-50227871 None:intergenic 25.0%
! ATCTTTATACAGACACATAA+CGG + chr1_4:50227986-50228005 None:intergenic 25.0%
ACAGATCTGAAGAAATGAAA+CGG + chr1_4:50224825-50224844 None:intergenic 30.0%
GAGATATGATGAATTCTAGA+AGG - chr1_4:50224945-50224964 Msa0167980:intron 30.0%
ATTGATGAATTGATGTTGTG+AGG - chr1_4:50225134-50225153 Msa0167980:CDS 30.0%
GAAATTGTTAGAACGATAAC+TGG - chr1_4:50225317-50225336 Msa0167980:intron 30.0%
CACTTTCTTTGTATTATTGG+TGG - chr1_4:50225442-50225461 Msa0167980:intron 30.0%
GAAGGGTTAAGTTTGTAATT+TGG + chr1_4:50225513-50225532 None:intergenic 30.0%
AAGAGGAGAAAGATTAAACA+AGG - chr1_4:50225568-50225587 Msa0167980:intron 30.0%
AGAGGAGAAAGATTAAACAA+GGG - chr1_4:50225569-50225588 Msa0167980:intron 30.0%
ATGATTTAGTGACACATACA+AGG + chr1_4:50225777-50225796 None:intergenic 30.0%
AACACGAATAAAACACTGAA+TGG + chr1_4:50225808-50225827 None:intergenic 30.0%
TAAACCTTAATGACATGACA+TGG + chr1_4:50225861-50225880 None:intergenic 30.0%
ATCATGCTCATCAATTTCAT+GGG + chr1_4:50226242-50226261 None:intergenic 30.0%
TATCATGCTCATCAATTTCA+TGG + chr1_4:50226243-50226262 None:intergenic 30.0%
CACATAAGTTATCTTTGTAC+AGG + chr1_4:50226370-50226389 None:intergenic 30.0%
!! CGTCATTTTGTTTCAACTAT+TGG - chr1_4:50226404-50226423 Msa0167980:intron 30.0%
GGAAATTGTGTTAGTGAATA+GGG + chr1_4:50226665-50226684 None:intergenic 30.0%
TGGAAATTGTGTTAGTGAAT+AGG + chr1_4:50226666-50226685 None:intergenic 30.0%
TTATTGTTAGAAAGTCTGTC+AGG - chr1_4:50226747-50226766 Msa0167980:CDS 30.0%
ATTAGGAGTTCATTAAACTC+TGG - chr1_4:50226804-50226823 Msa0167980:intron 30.0%
TGGAAAATCAAAAGAACAGT+AGG + chr1_4:50226834-50226853 None:intergenic 30.0%
TCTTAATTCTAATAGAACCC+AGG + chr1_4:50226919-50226938 None:intergenic 30.0%
! TAAACTCTGCAATTTTGTGA+TGG - chr1_4:50227143-50227162 Msa0167980:intron 30.0%
!! TCAGCTAGAAACAGTTTTAA+TGG - chr1_4:50227185-50227204 Msa0167980:intron 30.0%
!! CAGCTAGAAACAGTTTTAAT+GGG - chr1_4:50227186-50227205 Msa0167980:intron 30.0%
TTTCTGCTTTAACTATCTGT+TGG - chr1_4:50227334-50227353 Msa0167980:intron 30.0%
CTATCTGTTGGTATTTATGT+AGG - chr1_4:50227346-50227365 Msa0167980:intron 30.0%
ATTTATGTAGGGCAATGATA+TGG - chr1_4:50227358-50227377 Msa0167980:intron 30.0%
CAATGATATGGATTCTTCAA+GGG - chr1_4:50227370-50227389 Msa0167980:intron 30.0%
AATGATATGGATTCTTCAAG+GGG - chr1_4:50227371-50227390 Msa0167980:intron 30.0%
! ATTGTTCCAGTGTTGTTAAA+TGG - chr1_4:50227439-50227458 Msa0167980:intron 30.0%
TAACAAGTGCGTAAACTAAA+TGG + chr1_4:50227671-50227690 None:intergenic 30.0%
! TGTCATTTCCCAAACAATAA+AGG + chr1_4:50227705-50227724 None:intergenic 30.0%
TTGATGTTGAATCTGAAAGA+AGG - chr1_4:50227913-50227932 Msa0167980:intron 30.0%
CAATGAATGATAAGAACACT+TGG - chr1_4:50228209-50228228 Msa0167980:five_prime_UTR 30.0%
GTGCATAAGTAAAGGTTCTT+TGG + chr1_4:50224772-50224791 None:intergenic 35.0%
GTTGTTCTGTGCATAAGTAA+AGG + chr1_4:50224780-50224799 None:intergenic 35.0%
TTACTTATGCACAGAACAAC+AGG - chr1_4:50224780-50224799 Msa0167980:three_prime_UTR 35.0%
! GTGAGGTTTTGCTTTCATTT+TGG - chr1_4:50225151-50225170 Msa0167980:intron 35.0%
! TTTTGTGTGTTAAGTGCTCA+AGG - chr1_4:50225183-50225202 Msa0167980:intron 35.0%
! ATGAGCTTATTGATGATCAC+TGG - chr1_4:50225233-50225252 Msa0167980:intron 35.0%
ACATTGCACGTTCTTTGTTA+GGG + chr1_4:50225369-50225388 None:intergenic 35.0%
AACATTGCACGTTCTTTGTT+AGG + chr1_4:50225370-50225389 None:intergenic 35.0%
AACAAAGAACGTGCAATGTT+TGG - chr1_4:50225370-50225389 Msa0167980:intron 35.0%
GAGGAGAAAGATTAAACAAG+GGG - chr1_4:50225570-50225589 Msa0167980:intron 35.0%
AGGAGAAAGATTAAACAAGG+GGG - chr1_4:50225571-50225590 Msa0167980:intron 35.0%
!!! TGTCACAATTTTGAGGCAAA+AGG - chr1_4:50225727-50225746 Msa0167980:CDS 35.0%
GATAGACAAGGAAAAACTGA+AGG + chr1_4:50225839-50225858 None:intergenic 35.0%
CTATCCATGTCATGTCATTA+AGG - chr1_4:50225854-50225873 Msa0167980:intron 35.0%
TGTTTATTACCTGACCACAT+TGG - chr1_4:50226087-50226106 Msa0167980:intron 35.0%
TAGTAAAATCCAATGTGGTC+AGG + chr1_4:50226099-50226118 None:intergenic 35.0%
! AAAGAGCAACTCTGTTGTTT+CGG + chr1_4:50226162-50226181 None:intergenic 35.0%
! AACAGAGTTGCTCTTTTTGA+TGG - chr1_4:50226166-50226185 Msa0167980:intron 35.0%
!! TGCTCTTTTTGATGGTATTG+AGG - chr1_4:50226174-50226193 Msa0167980:intron 35.0%
!! TCTTTTTGATGGTATTGAGG+AGG - chr1_4:50226177-50226196 Msa0167980:intron 35.0%
!! CTTTTTGATGGTATTGAGGA+GGG - chr1_4:50226178-50226197 Msa0167980:intron 35.0%
! GCATGATAATGAACAAGCAA+TGG - chr1_4:50226255-50226274 Msa0167980:intron 35.0%
GATAATGAACAAGCAATGGA+TGG - chr1_4:50226259-50226278 Msa0167980:intron 35.0%
!! AATGGATGGATTGCAAGATA+GGG - chr1_4:50226273-50226292 Msa0167980:intron 35.0%
TATCTTTGTACAGGATAGCT+AGG + chr1_4:50226361-50226380 None:intergenic 35.0%
!! TTGTTTCTGTTGGGAAGTAA+AGG - chr1_4:50226480-50226499 Msa0167980:intron 35.0%
AGTAAAGGATAACTTACTGC+AGG - chr1_4:50226495-50226514 Msa0167980:intron 35.0%
AAAATTATACCCTGTCCATC+CGG - chr1_4:50226588-50226607 Msa0167980:intron 35.0%
TGAGCTCAAAACTCTTACAA+TGG + chr1_4:50226857-50226876 None:intergenic 35.0%
CTAATAGAACCCAGGAATTT+AGG + chr1_4:50226911-50226930 None:intergenic 35.0%
! TCTACAGGAAAAAGGGTTTT+AGG + chr1_4:50227062-50227081 None:intergenic 35.0%
!! AACTGTTTCTAGCTGATACA+GGG + chr1_4:50227181-50227200 None:intergenic 35.0%
!! AAACTGTTTCTAGCTGATAC+AGG + chr1_4:50227182-50227201 None:intergenic 35.0%
GCAATGATATGGATTCTTCA+AGG - chr1_4:50227369-50227388 Msa0167980:intron 35.0%
TTCCTTCACATATTGCCTAT+GGG + chr1_4:50227515-50227534 None:intergenic 35.0%
ATTCCTTCACATATTGCCTA+TGG + chr1_4:50227516-50227535 None:intergenic 35.0%
GTCATATAAACATGCCATTG+CGG + chr1_4:50227562-50227581 None:intergenic 35.0%
GCAATGGCATGTTTATATGA+CGG - chr1_4:50227561-50227580 Msa0167980:intron 35.0%
GAACTATCCAATGTTGTTGA+TGG + chr1_4:50227604-50227623 None:intergenic 35.0%
! CTTCAGAGGGCATATATATA+GGG + chr1_4:50227640-50227659 None:intergenic 35.0%
AATGGAATTGATCCTTCAGA+GGG + chr1_4:50227653-50227672 None:intergenic 35.0%
AAATGGAATTGATCCTTCAG+AGG + chr1_4:50227654-50227673 None:intergenic 35.0%
GGAAATGACAACACATTGAT+GGG - chr1_4:50227715-50227734 Msa0167980:intron 35.0%
GAAATGACAACACATTGATG+GGG - chr1_4:50227716-50227735 Msa0167980:intron 35.0%
! AGTTGTGTCTTTTTCCTCTT+AGG - chr1_4:50227742-50227761 Msa0167980:intron 35.0%
AAGGATGAAGCATGCATAAA+GGG + chr1_4:50228136-50228155 None:intergenic 35.0%
ATGAAAGCTTTCCAAACTGA+AGG + chr1_4:50228155-50228174 None:intergenic 35.0%
AGTGAAGGAGAGATAGAAAG+AGG + chr1_4:50224749-50224768 None:intergenic 40.0%
!! GTAAAGGTTCTTTGGAGTGA+AGG + chr1_4:50224764-50224783 None:intergenic 40.0%
GAAAGATTAAACAAGGGGGA+AGG - chr1_4:50225575-50225594 Msa0167980:intron 40.0%
AGATTCTACATGCATGCATG+AGG + chr1_4:50225696-50225715 None:intergenic 40.0%
TGACATGACATGGATAGACA+AGG + chr1_4:50225851-50225870 None:intergenic 40.0%
GTGGTCAGGTAATAAACACA+AGG + chr1_4:50226085-50226104 None:intergenic 40.0%
!! AAGAGCAACTCTGTTGTTTC+GGG + chr1_4:50226161-50226180 None:intergenic 40.0%
AATTTCATGGGAAGAAGCTG+AGG + chr1_4:50226230-50226249 None:intergenic 40.0%
!! CAATGGATGGATTGCAAGAT+AGG - chr1_4:50226272-50226291 Msa0167980:intron 40.0%
!!! TGCAGGAATTGTGTCGTTTT+TGG - chr1_4:50226512-50226531 Msa0167980:intron 40.0%
TGTCCTATCAGGTTCATATC+CGG + chr1_4:50226610-50226629 None:intergenic 40.0%
AACACTGGTGACCCATTATT+GGG - chr1_4:50226639-50226658 Msa0167980:intron 40.0%
AGTGAATAGGGCCCAATAAT+GGG + chr1_4:50226653-50226672 None:intergenic 40.0%
TAGTGAATAGGGCCCAATAA+TGG + chr1_4:50226654-50226673 None:intergenic 40.0%
TAGCAGAGGAAATAGAAGAG+AGG - chr1_4:50226697-50226716 Msa0167980:CDS 40.0%
AGCAGAGGAAATAGAAGAGA+GGG - chr1_4:50226698-50226717 Msa0167980:CDS 40.0%
AGGAAATAGAAGAGAGGGAA+GGG - chr1_4:50226703-50226722 Msa0167980:CDS 40.0%
GCTCAAAACTCTTACAATGG+TGG + chr1_4:50226854-50226873 None:intergenic 40.0%
ACTTCGCTTACCTAAATTCC+TGG - chr1_4:50226898-50226917 Msa0167980:intron 40.0%
CTTCGCTTACCTAAATTCCT+GGG - chr1_4:50226899-50226918 Msa0167980:intron 40.0%
AAGATGTGATGCAGACATGA+AGG + chr1_4:50226945-50226964 None:intergenic 40.0%
!! ACTGTTTCTAGCTGATACAG+GGG + chr1_4:50227180-50227199 None:intergenic 40.0%
ATTTGTCCATAGTTCCTGAG+AGG + chr1_4:50227400-50227419 None:intergenic 40.0%
TGGTCACCATTTAACAACAC+TGG + chr1_4:50227448-50227467 None:intergenic 40.0%
! GTGTTGTTAAATGGTGACCA+TGG - chr1_4:50227448-50227467 Msa0167980:intron 40.0%
TCCTTCACATATTGCCTATG+GGG + chr1_4:50227514-50227533 None:intergenic 40.0%
ATGTGAAGGAATGTCTTCCA+TGG - chr1_4:50227524-50227543 Msa0167980:intron 40.0%
! CCTTCAGAGGGCATATATAT+AGG + chr1_4:50227641-50227660 None:intergenic 40.0%
CCTATATATATGCCCTCTGA+AGG - chr1_4:50227638-50227657 Msa0167980:intron 40.0%
GGGAAATGACAACACATTGA+TGG - chr1_4:50227714-50227733 Msa0167980:intron 40.0%
! TCTGTGTATGGTGATGTTTC+AGG - chr1_4:50227781-50227800 Msa0167980:intron 40.0%
CTACCAGTGAGAACATTCTT+CGG + chr1_4:50227826-50227845 None:intergenic 40.0%
GAAGGATGAAGCATGCATAA+AGG + chr1_4:50228137-50228156 None:intergenic 40.0%
TGTGTGTTAAGTGCTCAAGG+AGG - chr1_4:50225186-50225205 Msa0167980:intron 45.0%
CAAGGAGGTGAATTGTGGAT+AGG - chr1_4:50225201-50225220 Msa0167980:intron 45.0%
GTTACAGCGACAAGTAGGAA+GGG + chr1_4:50225530-50225549 None:intergenic 45.0%
! TGTTGGTTACAGCGACAAGT+AGG + chr1_4:50225535-50225554 None:intergenic 45.0%
! TTTGATGGTATTGAGGAGGG+TGG - chr1_4:50226181-50226200 Msa0167980:intron 45.0%
CTTTGTACAGGATAGCTAGG+TGG + chr1_4:50226358-50226377 None:intergenic 45.0%
CTATCAGGTTCATATCCGGA+TGG + chr1_4:50226606-50226625 None:intergenic 45.0%
CATCCGGATATGAACCTGAT+AGG - chr1_4:50226604-50226623 Msa0167980:intron 45.0%
ATGAACCTGATAGGACACCA+AGG - chr1_4:50226613-50226632 Msa0167980:intron 45.0%
GAACACTGGTGACCCATTAT+TGG - chr1_4:50226638-50226657 Msa0167980:intron 45.0%
CCTCTGCTACTACAATCTTC+TGG + chr1_4:50226686-50226705 None:intergenic 45.0%
CCAGAAGATTGTAGTAGCAG+AGG - chr1_4:50226683-50226702 Msa0167980:CDS 45.0%
GAGGAAATAGAAGAGAGGGA+AGG - chr1_4:50226702-50226721 Msa0167980:CDS 45.0%
GGAAATAGAAGAGAGGGAAG+GGG - chr1_4:50226704-50226723 Msa0167980:CDS 45.0%
! GGAGAGTTACTCTCTGGTTT+AGG - chr1_4:50226768-50226787 Msa0167980:CDS 45.0%
GCTGTCAGGTGATATACATG+AGG - chr1_4:50227222-50227241 Msa0167980:intron 45.0%
GTCAGGTGATATACATGAGG+AGG - chr1_4:50227225-50227244 Msa0167980:intron 45.0%
AGGTGATATACATGAGGAGG+TGG - chr1_4:50227228-50227247 Msa0167980:intron 45.0%
GGATAATCATAACCGCATGC+TGG - chr1_4:50227249-50227268 Msa0167980:intron 45.0%
TAACCGCATGCTGGATCATA+TGG - chr1_4:50227258-50227277 Msa0167980:intron 45.0%
ACACCATATGATCCAGCATG+CGG + chr1_4:50227264-50227283 None:intergenic 45.0%
! ATTTTTCACAACCGCCCCAT+AGG - chr1_4:50227497-50227516 Msa0167980:intron 45.0%
TTCACATATTGCCTATGGGG+CGG + chr1_4:50227511-50227530 None:intergenic 45.0%
!! CCAATGTTGTTGATGGCAGA+GGG + chr1_4:50227597-50227616 None:intergenic 45.0%
!! TCCAATGTTGTTGATGGCAG+AGG + chr1_4:50227598-50227617 None:intergenic 45.0%
GCATGCTTCATCCTTCAGTT+TGG - chr1_4:50228141-50228160 Msa0167980:intron 45.0%
!!! AATTAATTTTTTATTTGATT+AGG - chr1_4:50224883-50224902 Msa0167980:intron 5.0%
GATCGAGTGAATCCGTGATC+TGG - chr1_4:50224912-50224931 Msa0167980:intron 50.0%
GTGCTCAAGGAGGTGAATTG+TGG - chr1_4:50225196-50225215 Msa0167980:intron 50.0%
AGAAAGTGAACCTGCTCTGC+AGG + chr1_4:50225430-50225449 None:intergenic 50.0%
GGTTACAGCGACAAGTAGGA+AGG + chr1_4:50225531-50225550 None:intergenic 50.0%
!! AAGGGGGAAGGTGCTTAGTA+GGG - chr1_4:50225587-50225606 Msa0167980:intron 50.0%
GATAGCTAGGTGGCAGTCTA+TGG + chr1_4:50226348-50226367 None:intergenic 50.0%
GGTTCATATCCGGATGGACA+GGG + chr1_4:50226600-50226619 None:intergenic 50.0%
AGGTTCATATCCGGATGGAC+AGG + chr1_4:50226601-50226620 None:intergenic 50.0%
!! TTCGACCTTGGTGTCCTATC+AGG + chr1_4:50226621-50226640 None:intergenic 50.0%
CTGTCAGGAGAGTTACTCTC+TGG - chr1_4:50226762-50226781 Msa0167980:CDS 50.0%
! ACTCTCTGGTTTAGGAGCTC+TGG - chr1_4:50226776-50226795 Msa0167980:CDS 50.0%
! TAGGAGCTCTGGTCTGGATT+AGG - chr1_4:50226787-50226806 Msa0167980:CDS 50.0%
GTCTGTTTGCAACAGCTGTC+AGG - chr1_4:50227208-50227227 Msa0167980:intron 50.0%
ATGGCGCCACATGTCAGATT+CGG - chr1_4:50227467-50227486 Msa0167980:intron 50.0%
TGACACCCGAATCTGACATG+TGG + chr1_4:50227476-50227495 None:intergenic 50.0%
GCCCCATAGGCAATATGTGA+AGG - chr1_4:50227510-50227529 Msa0167980:intron 50.0%
CATGCCATTGCGGCTAATGA+CGG + chr1_4:50227552-50227571 None:intergenic 50.0%
CCCTCTGCCATCAACAACAT+TGG - chr1_4:50227594-50227613 Msa0167980:intron 50.0%
CAGTGAGAACATTCTTCGGC+TGG + chr1_4:50227822-50227841 None:intergenic 50.0%
CAGCCGAAGAATGTTCTCAC+TGG - chr1_4:50227820-50227839 Msa0167980:intron 50.0%
CGAGTGAATCCGTGATCTGG+TGG - chr1_4:50224915-50224934 Msa0167980:intron 55.0%
GTGAATCCGTGATCTGGTGG+TGG - chr1_4:50224918-50224937 Msa0167980:intron 55.0%
!! AATCCGTGATCTGGTGGTGG+TGG - chr1_4:50224921-50224940 Msa0167980:intron 55.0%
TCACCACCACCACCAGATCA+CGG + chr1_4:50224927-50224946 None:intergenic 55.0%
TGCTCTGCAGGCAGAGACAT+AGG + chr1_4:50225418-50225437 None:intergenic 55.0%
TATGTCTCTGCCTGCAGAGC+AGG - chr1_4:50225417-50225436 Msa0167980:intron 55.0%
!! CAAGGGGGAAGGTGCTTAGT+AGG - chr1_4:50225586-50225605 Msa0167980:intron 55.0%
AGGACACCAAGGTCGAACAC+TGG - chr1_4:50226624-50226643 Msa0167980:intron 55.0%
! CTGGTTTAGGAGCTCTGGTC+TGG - chr1_4:50226781-50226800 Msa0167980:CDS 55.0%
TCTTCAAGGGGAGTCCTCTC+AGG - chr1_4:50227383-50227402 Msa0167980:intron 55.0%
GGGAGTCCTCTCAGGAACTA+TGG - chr1_4:50227391-50227410 Msa0167980:intron 55.0%
GAATCTGACATGTGGCGCCA+TGG + chr1_4:50227468-50227487 None:intergenic 55.0%
TGGCGCCACATGTCAGATTC+GGG - chr1_4:50227468-50227487 Msa0167980:intron 55.0%
GGGTCACCAGTGTTCGACCT+TGG + chr1_4:50226633-50226652 None:intergenic 60.0%
GAAGAGAGGGAAGGGGAGTG+AGG - chr1_4:50226711-50226730 Msa0167980:CDS 60.0%
! TGCGGCTAATGACGGTGCCA+TGG + chr1_4:50227544-50227563 None:intergenic 60.0%
GGCACCGTCATTAGCCGCAA+TGG - chr1_4:50227545-50227564 Msa0167980:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 50224733 50228239 50224733 ID=Msa0167980;Name=Msa0167980
chr1_4 mRNA 50224733 50228239 50224733 ID=Msa0167980-mRNA-1;Parent=Msa0167980;Name=Msa0167980-mRNA-1;_AED=0.20;_eAED=0.20;_QI=114|0.8|1|1|0.2|0.33|6|247|107
chr1_4 exon 50224733 50224847 50224733 ID=Msa0167980-mRNA-1:exon:14819;Parent=Msa0167980-mRNA-1
chr1_4 exon 50224948 50225169 50224948 ID=Msa0167980-mRNA-1:exon:14818;Parent=Msa0167980-mRNA-1
chr1_4 exon 50225693 50225749 50225693 ID=Msa0167980-mRNA-1:exon:14817;Parent=Msa0167980-mRNA-1
chr1_4 exon 50226660 50226819 50226660 ID=Msa0167980-mRNA-1:exon:14816;Parent=Msa0167980-mRNA-1
chr1_4 exon 50228006 50228067 50228006 ID=Msa0167980-mRNA-1:exon:14815;Parent=Msa0167980-mRNA-1
chr1_4 exon 50228171 50228239 50228171 ID=Msa0167980-mRNA-1:exon:14814;Parent=Msa0167980-mRNA-1
chr1_4 five_prime_UTR 50228171 50228239 50228171 ID=Msa0167980-mRNA-1:five_prime_utr;Parent=Msa0167980-mRNA-1
chr1_4 five_prime_UTR 50228023 50228067 50228023 ID=Msa0167980-mRNA-1:five_prime_utr;Parent=Msa0167980-mRNA-1
chr1_4 CDS 50228006 50228022 50228006 ID=Msa0167980-mRNA-1:cds;Parent=Msa0167980-mRNA-1
chr1_4 CDS 50226660 50226819 50226660 ID=Msa0167980-mRNA-1:cds;Parent=Msa0167980-mRNA-1
chr1_4 CDS 50225693 50225749 50225693 ID=Msa0167980-mRNA-1:cds;Parent=Msa0167980-mRNA-1
chr1_4 CDS 50225080 50225169 50225080 ID=Msa0167980-mRNA-1:cds;Parent=Msa0167980-mRNA-1
chr1_4 three_prime_UTR 50224948 50225079 50224948 ID=Msa0167980-mRNA-1:three_prime_utr;Parent=Msa0167980-mRNA-1
chr1_4 three_prime_UTR 50224733 50224847 50224733 ID=Msa0167980-mRNA-1:three_prime_utr;Parent=Msa0167980-mRNA-1
Gene Sequence

>Msa0167980

ATGATGAATTCTAGAAGAGACACCCGAAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGAATCAGAGCATCATCTATGTACTCCTCAGCTTCTTCCCATGAAATTGATGAGCATGATAATGAACAAGCAATGGATGGATTGCAAGATAGGGTTAATCTGCTGAAAAGACTGTCAGGTGATATACATGAGGAGGTGGATAATCATAACCGCATGCTGGATCATATGGTATTTGAGACAAAATCCAGCCGAAGAATGTTCTCACTGGTAGCATCCTTTGTTGTGATTTTTCTTATCATTTACTATCTAACTAGGTAA

Protein sequence

>Msa0167980

MMNSRRDTRNNRVALFDGIEEGGIRASSMYSSASSHEIDEHDNEQAMDGLQDRVNLLKRLSGDIHEEVDNHNRMLDHMVFETKSSRRMFSLVASFVVIFLIIYYLTR*