Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016060 | sp|Q94CG2|BET12_ARATH | 66.923 | 130 | 41 | 1 | 1 | 130 | 1 | 128 | 6.62e-60 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016060 | Msa0043980 | 0.801452 | 8.945831e-49 | -8.615850e-47 |
| Msa0016060 | Msa0081650 | 0.803898 | 2.797665e-49 | -8.615850e-47 |
| Msa0016060 | Msa0110280 | 0.906972 | 8.369863e-81 | -8.615850e-47 |
| Msa0016060 | Msa0114060 | 0.803109 | 4.078676e-49 | -8.615850e-47 |
| Msa0016060 | Msa0129190 | -0.800806 | 1.212374e-48 | -8.615850e-47 |
| Msa0016060 | Msa0138020 | 0.825986 | 3.475138e-54 | -8.615850e-47 |
| Msa0016060 | Msa0140100 | 0.813016 | 3.168387e-51 | -8.615850e-47 |
| Msa0016060 | Msa0167820 | 0.803488 | 3.404195e-49 | -8.615850e-47 |
| Msa0016060 | Msa0197660 | 0.816621 | 5.032318e-52 | -8.615850e-47 |
| Msa0016060 | Msa0215590 | 0.809671 | 1.686449e-50 | -8.615850e-47 |
| Msa0016060 | Msa0217700 | 0.813727 | 2.211024e-51 | -8.615850e-47 |
| Msa0016060 | Msa0225670 | 0.800615 | 1.326469e-48 | -8.615850e-47 |
| Msa0016060 | Msa0239800 | 0.824199 | 9.186499e-54 | -8.615850e-47 |
| Msa0016060 | Msa0257520 | 0.828978 | 6.654634e-55 | -8.615850e-47 |
| Msa0016060 | Msa0267370 | 0.804227 | 2.390137e-49 | -8.615850e-47 |
| Msa0016060 | Msa0278580 | 0.807355 | 5.262673e-50 | -8.615850e-47 |
| Msa0016060 | Msa0296820 | 0.814124 | 1.807653e-51 | -8.615850e-47 |
| Msa0016060 | Msa0317510 | 0.816034 | 6.809118e-52 | -8.615850e-47 |
| Msa0016060 | Msa0317970 | 0.819863 | 9.289572e-53 | -8.615850e-47 |
| Msa0016060 | Msa0333650 | 0.812704 | 3.708711e-51 | -8.615850e-47 |
| Msa0016060 | Msa0342010 | 0.808725 | 2.689670e-50 | -8.615850e-47 |
| Msa0016060 | Msa0371250 | 0.800714 | 1.266030e-48 | -8.615850e-47 |
| Msa0016060 | Msa0383800 | 0.808657 | 2.780301e-50 | -8.615850e-47 |
| Msa0016060 | Msa0408300 | 0.814767 | 1.302586e-51 | -8.615850e-47 |
| Msa0016060 | Msa0417330 | 0.814916 | 1.207351e-51 | -8.615850e-47 |
| Msa0016060 | Msa0468320 | 0.836378 | 9.690811e-57 | -8.615850e-47 |
| Msa0016060 | Msa0479170 | 0.805518 | 1.284240e-49 | -8.615850e-47 |
| Msa0016060 | Msa0506670 | 0.807028 | 6.174719e-50 | -8.615850e-47 |
| Msa0016060 | Msa0518440 | 0.808939 | 2.420517e-50 | -8.615850e-47 |
| Msa0016060 | Msa0532980 | 0.838228 | 3.257642e-57 | -8.615850e-47 |
| Msa0016060 | Msa0541040 | 0.804435 | 2.163373e-49 | -8.615850e-47 |
| Msa0016060 | Msa0572840 | 0.803606 | 3.217467e-49 | -8.615850e-47 |
| Msa0016060 | Msa0574390 | 0.821467 | 3.974872e-53 | -8.615850e-47 |
| Msa0016060 | Msa0596800 | 0.808171 | 3.530324e-50 | -8.615850e-47 |
| Msa0016060 | Msa0614920 | 0.821260 | 4.436847e-53 | -8.615850e-47 |
| Msa0016060 | Msa0620620 | 0.826797 | 2.227138e-54 | -8.615850e-47 |
| Msa0016060 | Msa0667770 | 0.834238 | 3.364898e-56 | -8.615850e-47 |
| Msa0016060 | Msa0667790 | 0.839693 | 1.360466e-57 | -8.615850e-47 |
| Msa0016060 | Msa0688390 | 0.810989 | 8.758763e-51 | -8.615850e-47 |
| Msa0016060 | Msa0707250 | 0.814351 | 1.610071e-51 | -8.615850e-47 |
| Msa0016060 | Msa0711150 | 0.801489 | 8.788056e-49 | -8.615850e-47 |
| Msa0016060 | Msa0784480 | 0.802744 | 4.851338e-49 | -8.615850e-47 |
| Msa0016060 | Msa0818060 | 0.810859 | 9.345108e-51 | -8.615850e-47 |
| Msa0016060 | Msa0821190 | 0.804950 | 1.688559e-49 | -8.615850e-47 |
| Msa0016060 | Msa0822310 | -0.801020 | 1.096550e-48 | -8.615850e-47 |
| Msa0016060 | Msa0822500 | 0.823182 | 1.589346e-53 | -8.615850e-47 |
| Msa0016060 | Msa0826760 | 0.830990 | 2.150911e-55 | -8.615850e-47 |
| Msa0016060 | Msa0831110 | 0.818918 | 1.525176e-52 | -8.615850e-47 |
| Msa0016060 | Msa0865030 | 0.808632 | 2.815003e-50 | -8.615850e-47 |
| Msa0016060 | Msa1001390 | 0.803195 | 3.914572e-49 | -8.615850e-47 |
| Msa0016060 | Msa1034500 | 0.811127 | 8.178860e-51 | -8.615850e-47 |
| Msa0016060 | Msa1080640 | 0.803981 | 2.688551e-49 | -8.615850e-47 |
| Msa0016060 | Msa1089320 | 0.806898 | 6.577601e-50 | -8.615850e-47 |
| Msa0016060 | Msa1089450 | 0.814622 | 1.402815e-51 | -8.615850e-47 |
| Msa0016060 | Msa1089460 | 0.806322 | 8.702261e-50 | -8.615850e-47 |
| Msa0016060 | Msa1104560 | 0.804237 | 2.378619e-49 | -8.615850e-47 |
| Msa0016060 | Msa1114590 | 0.800295 | 1.540801e-48 | -8.615850e-47 |
| Msa0016060 | Msa1162780 | 0.815817 | 7.613093e-52 | -8.615850e-47 |
| Msa0016060 | Msa1204530 | 0.805025 | 1.629019e-49 | -8.615850e-47 |
| Msa0016060 | Msa1204630 | 0.808625 | 2.824611e-50 | -8.615850e-47 |
| Msa0016060 | Msa1206310 | 0.809195 | 2.133384e-50 | -8.615850e-47 |
| Msa0016060 | Msa1206360 | 0.814504 | 1.489541e-51 | -8.615850e-47 |
| Msa0016060 | Msa1206850 | 0.821809 | 3.313429e-53 | -8.615850e-47 |
| Msa0016060 | Msa1207310 | 0.815018 | 1.146041e-51 | -8.615850e-47 |
| Msa0016060 | Msa1225130 | 0.802981 | 4.334641e-49 | -8.615850e-47 |
| Msa0016060 | Msa1231840 | 0.808797 | 2.595478e-50 | -8.615850e-47 |
| Msa0016060 | Msa1246360 | 0.801059 | 1.076582e-48 | -8.615850e-47 |
| Msa0016060 | Msa1257130 | 0.803471 | 3.430904e-49 | -8.615850e-47 |
| Msa0016060 | Msa1305810 | 0.804014 | 2.647528e-49 | -8.615850e-47 |
| Msa0016060 | Msa1306560 | 0.817431 | 3.310166e-52 | -8.615850e-47 |
| Msa0016060 | Msa1307180 | 0.812704 | 3.708711e-51 | -8.615850e-47 |
| Msa0016060 | Msa1308870 | 0.801246 | 9.858022e-49 | -8.615850e-47 |
| Msa0016060 | Msa1316360 | 0.805938 | 1.048494e-49 | -8.615850e-47 |
| Msa0016060 | Msa1346840 | 0.800845 | 1.190323e-48 | -8.615850e-47 |
| Msa0016060 | Msa1355890 | 0.802701 | 4.951684e-49 | -8.615850e-47 |
| Msa0016060 | Msa1364210 | 0.809280 | 2.046102e-50 | -8.615850e-47 |
| Msa0016060 | Msa1382790 | 0.835909 | 1.275024e-56 | -8.615850e-47 |
| Msa0016060 | Msa1384870 | 0.807811 | 4.212604e-50 | -8.615850e-47 |
| Msa0016060 | Msa1389880 | 0.804741 | 1.867558e-49 | -8.615850e-47 |
| Msa0016060 | Msa1391550 | 0.806048 | 9.937193e-50 | -8.615850e-47 |
| Msa0016060 | Msa1393570 | 0.809976 | 1.450125e-50 | -8.615850e-47 |
| Msa0016060 | Msa1394380 | 0.819964 | 8.806046e-53 | -8.615850e-47 |
| Msa0016060 | Msa1407190 | 0.805826 | 1.106477e-49 | -8.615850e-47 |
| Msa0016060 | Msa1418280 | 0.813762 | 2.172466e-51 | -8.615850e-47 |
| Msa0016060 | Msa1418850 | 0.826541 | 2.563087e-54 | -8.615850e-47 |
| Msa0016060 | Msa1424750 | 0.802912 | 4.479215e-49 | -8.615850e-47 |
| Msa0016060 | Msa1425880 | 0.808040 | 3.765671e-50 | -8.615850e-47 |
| Msa0016060 | Msa1428780 | 0.806370 | 8.502794e-50 | -8.615850e-47 |
| Msa0016060 | Msa1432130 | 0.806187 | 9.291624e-50 | -8.615850e-47 |
| Msa0016060 | Msa1463900 | 0.813171 | 2.929674e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016060 | MtrunA17_Chr1g0168091 | 100.000 | 133 | 0 | 0 | 1 | 133 | 1 | 133 | 2.79e-94 | 268 |
| Msa0016060 | MtrunA17_Chr1g0184301 | 60.465 | 129 | 44 | 2 | 1 | 125 | 2 | 127 | 4.47e-45 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016060 | AT4G14455.1 | 66.923 | 130 | 41 | 1 | 1 | 130 | 1 | 128 | 6.73e-61 | 183 |
| Msa0016060 | AT3G58170.1 | 61.600 | 125 | 45 | 1 | 1 | 125 | 1 | 122 | 3.01e-49 | 154 |
Find 56 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCATATACTACCTTATT+AGG | 0.142736 | 1_1:+26748302 | Msa0016060:CDS |
| GTCTGGAGGAGGGTGGTTTA+AGG | 0.196647 | 1_1:+26747004 | Msa0016060:CDS |
| CCATGTGATTCCAGCTTATC+TGG | 0.204248 | 1_1:-26749957 | None:intergenic |
| ATGGAATCATTTACCTAATA+AGG | 0.207367 | 1_1:-26748315 | None:intergenic |
| AATTCATTAGGGTAATAAAA+TGG | 0.317654 | 1_1:+26748073 | Msa0016060:intron |
| TTTAGATGGTCTTGATAGTC+TGG | 0.346866 | 1_1:+26746987 | Msa0016060:CDS |
| ACTAATCAATGAATTATAGA+AGG | 0.351986 | 1_1:+26744997 | Msa0016060:exon |
| ATCCATGACAATGGTGTGTT+TGG | 0.352630 | 1_1:-26749933 | None:intergenic |
| TTACTTGATCAACAGTTAAC+AGG | 0.362727 | 1_1:+26747927 | Msa0016060:intron |
| TCTGGAGGAGGGTGGTTTAA+GGG | 0.370422 | 1_1:+26747005 | Msa0016060:CDS |
| TGCAATCTAGCTTTATAAAA+CGG | 0.374601 | 1_1:-26749635 | None:intergenic |
| TATGAAGTGATTTATTTGTT+TGG | 0.377936 | 1_1:+26749877 | Msa0016060:three_prime_UTR |
| ACCATCTAAAAGTGATGATC+TGG | 0.403747 | 1_1:-26746974 | None:intergenic |
| TGGATCAAGGGGTATGATGT+TGG | 0.411208 | 1_1:+26748097 | Msa0016060:CDS |
| GCAATCTAGCTTTATAAAAC+GGG | 0.413183 | 1_1:-26749634 | None:intergenic |
| CGCACACTTTGCAGGATGCT+TGG | 0.422916 | 1_1:+26749590 | Msa0016060:intron |
| TCTGTCGTGCAGAGTGTCTA+TGG | 0.436752 | 1_1:-26747076 | None:intergenic |
| GGATCAAGGGGTATGATGTT+GGG | 0.453741 | 1_1:+26748098 | Msa0016060:CDS |
| AAACCACATGCCAACGGTTC+CGG | 0.461643 | 1_1:-26749707 | None:intergenic |
| GTAATAAAATGGATGGATCA+AGG | 0.462679 | 1_1:+26748084 | Msa0016060:CDS |
| TAGATTGCATGATGGTCGTT+TGG | 0.475001 | 1_1:+26749649 | Msa0016060:three_prime_UTR |
| TCCATGACAATGGTGTGTTT+GGG | 0.498987 | 1_1:-26749932 | None:intergenic |
| GTCATAACAGTATGCTCGAT+CGG | 0.499149 | 1_1:+26747973 | Msa0016060:CDS |
| TAATAAAATGGATGGATCAA+GGG | 0.502217 | 1_1:+26748085 | Msa0016060:CDS |
| CATGTGATTCCAGCTTATCT+GGG | 0.502928 | 1_1:-26749956 | None:intergenic |
| CATTAGGGTAATAAAATGGA+TGG | 0.512084 | 1_1:+26748077 | Msa0016060:intron |
| GTCATGGATCCCAGATAAGC+TGG | 0.513548 | 1_1:+26749947 | Msa0016060:three_prime_UTR |
| GTTTACTTTCCCTCCTCACA+TGG | 0.526159 | 1_1:+26749789 | Msa0016060:three_prime_UTR |
| AAGGTAGTATATGAATATGA+AGG | 0.530565 | 1_1:-26748296 | None:intergenic |
| TACCTTCTTGAATCGATCCA+TGG | 0.534362 | 1_1:-26748123 | None:intergenic |
| TCATAACAGTATGCTCGATC+GGG | 0.535450 | 1_1:+26747974 | Msa0016060:CDS |
| AAGGAAAACATGCTCACTTG+TGG | 0.536458 | 1_1:+26748258 | Msa0016060:CDS |
| TTCATGTGCTGTAAAATGTC+CGG | 0.540929 | 1_1:+26749688 | Msa0016060:three_prime_UTR |
| TGGTCTTGATAGTCTGGAGG+AGG | 0.542729 | 1_1:+26746993 | Msa0016060:CDS |
| GGGTATGATGTTGGGAACCA+TGG | 0.547345 | 1_1:+26748106 | Msa0016060:CDS |
| AGGAAAACATGCTCACTTGT+GGG | 0.548660 | 1_1:+26748259 | Msa0016060:CDS |
| TGTAAAATGTCCGGAACCGT+TGG | 0.554411 | 1_1:+26749697 | Msa0016060:three_prime_UTR |
| AATAAAATGGATGGATCAAG+GGG | 0.563592 | 1_1:+26748086 | Msa0016060:CDS |
| TATAAAGCTAGATTGCATGA+TGG | 0.564350 | 1_1:+26749641 | Msa0016060:three_prime_UTR |
| AAAGTGATGATCTGGATGAC+CGG | 0.575798 | 1_1:-26746966 | None:intergenic |
| AATGTTTAGAAATGACGAGA+AGG | 0.576825 | 1_1:-26744917 | None:intergenic |
| TCCCAAACACACCATTGTCA+TGG | 0.578925 | 1_1:+26749931 | Msa0016060:three_prime_UTR |
| CTTGATAGTCTGGAGGAGGG+TGG | 0.583431 | 1_1:+26746997 | Msa0016060:CDS |
| CCAGATAAGCTGGAATCACA+TGG | 0.585397 | 1_1:+26749957 | Msa0016060:three_prime_UTR |
| GATACATGACCATGTGAGGA+GGG | 0.595826 | 1_1:-26749798 | None:intergenic |
| AAATGATACATGACCATGTG+AGG | 0.600915 | 1_1:-26749802 | None:intergenic |
| AGATGGTCTTGATAGTCTGG+AGG | 0.606964 | 1_1:+26746990 | Msa0016060:CDS |
| TGATACATGACCATGTGAGG+AGG | 0.610278 | 1_1:-26749799 | None:intergenic |
| TGTCCGGAACCGTTGGCATG+TGG | 0.613009 | 1_1:+26749704 | Msa0016060:three_prime_UTR |
| AACCATGGATCGATTCAAGA+AGG | 0.613381 | 1_1:+26748121 | Msa0016060:CDS |
| AGTTTCAAACCACATGCCAA+CGG | 0.633519 | 1_1:-26749713 | None:intergenic |
| AACAGGTGATATACATGAGG+AGG | 0.637938 | 1_1:+26747944 | Msa0016060:CDS |
| TAACAGTATGCTCGATCGGG+TGG | 0.649983 | 1_1:+26747977 | Msa0016060:CDS |
| GGTCTTGATAGTCTGGAGGA+GGG | 0.664369 | 1_1:+26746994 | Msa0016060:CDS |
| GTTAACAGGTGATATACATG+AGG | 0.676350 | 1_1:+26747941 | Msa0016060:intron |
| TTATCTGGGATCCATGACAA+TGG | 0.682635 | 1_1:-26749942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCATTAATAATTCATTT+TGG | + | chr1_1:26746723-26746742 | Msa0016060:intron | 10.0% |
| !!! | ATAATAATGAAATTTTGTTT+CGG | + | chr1_1:26747295-26747314 | Msa0016060:intron | 10.0% |
| !!! | TTTAATTTGAATTTTTGTTT+TGG | + | chr1_1:26747416-26747435 | Msa0016060:intron | 10.0% |
| !! | AATACAGAAAATTATAAATA+GGG | - | chr1_1:26747468-26747487 | None:intergenic | 10.0% |
| !!! | TTTTTGAATGATTGATTTTT+AGG | + | chr1_1:26745515-26745534 | Msa0016060:intron | 15.0% |
| !!! | TTTTGAATGATTGATTTTTA+GGG | + | chr1_1:26745516-26745535 | Msa0016060:intron | 15.0% |
| !!! | ATAGTTTTAAATTGAAAATC+AGG | + | chr1_1:26746196-26746215 | Msa0016060:intron | 15.0% |
| !! | AGAAAAGTAATAAAAATTAG+TGG | - | chr1_1:26746829-26746848 | None:intergenic | 15.0% |
| !! | GAATACAGAAAATTATAAAT+AGG | - | chr1_1:26747469-26747488 | None:intergenic | 15.0% |
| !! | ATATTAAAAGTCAATAGATA+AGG | - | chr1_1:26747907-26747926 | None:intergenic | 15.0% |
| !! | AGATTAATCAAACTATAAAA+AGG | + | chr1_1:26749345-26749364 | Msa0016060:intron | 15.0% |
| !! | ATTTATTATTATTCACAACA+AGG | - | chr1_1:26749536-26749555 | None:intergenic | 15.0% |
| !! | ACTAATCAATGAATTATAGA+AGG | + | chr1_1:26744997-26745016 | Msa0016060:exon | 20.0% |
| !! | TATATAAGCGGAAATTAAAA+TGG | - | chr1_1:26745054-26745073 | None:intergenic | 20.0% |
| !! | GAATTGGAAAAATATATAAG+CGG | - | chr1_1:26745066-26745085 | None:intergenic | 20.0% |
| !! | TAAATTAAATGAACGCAAAA+TGG | - | chr1_1:26745105-26745124 | None:intergenic | 20.0% |
| !!! | TCATTCTTTTCAATTTATTC+AGG | + | chr1_1:26746679-26746698 | Msa0016060:intron | 20.0% |
| !! | AAAAAAAACTTACTTGCTTT+AGG | - | chr1_1:26747132-26747151 | None:intergenic | 20.0% |
| !! | TAATTTCTTATCTTAACATC+TGG | + | chr1_1:26747187-26747206 | Msa0016060:intron | 20.0% |
| !! | TTGAAATATTGGTAAGAAAT+TGG | + | chr1_1:26747326-26747345 | Msa0016060:intron | 20.0% |
| !! | TCAATGTATTTGTAGATAAA+AGG | + | chr1_1:26747556-26747575 | Msa0016060:intron | 20.0% |
| !! | AATTCATTAGGGTAATAAAA+TGG | + | chr1_1:26748073-26748092 | Msa0016060:intron | 20.0% |
| !!! | GTATAAAAACTGAATTTTGT+AGG | + | chr1_1:26748216-26748235 | Msa0016060:intron | 20.0% |
| !! | TATTCATATACTACCTTATT+AGG | + | chr1_1:26748302-26748321 | Msa0016060:CDS | 20.0% |
| !!! | GTGATTTAATATCAGTATTT+TGG | + | chr1_1:26748577-26748596 | Msa0016060:intron | 20.0% |
| !! | CTTCATATATAGAATTTGAT+AGG | + | chr1_1:26748838-26748857 | Msa0016060:intron | 20.0% |
| !! | AGATTAATCAAACTAAAGAA+AGG | + | chr1_1:26748883-26748902 | Msa0016060:intron | 20.0% |
| !!! | TGATTTAACATCAGTATTTT+TGG | + | chr1_1:26749033-26749052 | Msa0016060:intron | 20.0% |
| !! | GATGCAATAATTTAAGAAAA+TGG | + | chr1_1:26749185-26749204 | Msa0016060:intron | 20.0% |
| !! | CTTCATATATACAATTTGAT+AGG | + | chr1_1:26749300-26749319 | Msa0016060:intron | 20.0% |
| !! | TATGAAGTGATTTATTTGTT+TGG | + | chr1_1:26749877-26749896 | Msa0016060:three_prime_UTR | 20.0% |
| ! | GGATAGTATTAAATCTTGTT+TGG | + | chr1_1:26745448-26745467 | Msa0016060:intron | 25.0% |
| !!! | TTTTTTTTTCGGTTTACCAT+AGG | + | chr1_1:26745579-26745598 | Msa0016060:intron | 25.0% |
| ! | ACATAACTTAGTGTAATCAT+AGG | + | chr1_1:26745879-26745898 | Msa0016060:intron | 25.0% |
| ! | CATAACTTAGTGTAATCATA+GGG | + | chr1_1:26745880-26745899 | Msa0016060:intron | 25.0% |
| !!! | GCTTTAAAAACTGAATAACT+AGG | - | chr1_1:26746093-26746112 | None:intergenic | 25.0% |
| ! | AAAATCAGGATAAACATTTG+AGG | + | chr1_1:26746210-26746229 | Msa0016060:intron | 25.0% |
| ! | TTGAAATAACTCAATGCATA+AGG | - | chr1_1:26746288-26746307 | None:intergenic | 25.0% |
| !!! | TTTTATTTCCTAATTTCCAG+CGG | + | chr1_1:26746494-26746513 | Msa0016060:intron | 25.0% |
| ! | AAATGAAGTCTTCTAATCAA+TGG | - | chr1_1:26746862-26746881 | None:intergenic | 25.0% |
| !!! | CTAGTTATTTTTGCTGAAAA+CGG | + | chr1_1:26746890-26746909 | Msa0016060:intron | 25.0% |
| ! | CTTACTAGTGTTAATATACA+AGG | - | chr1_1:26746919-26746938 | None:intergenic | 25.0% |
| !! | TTTTCAAAAACAGAGATAAC+CGG | + | chr1_1:26746947-26746966 | Msa0016060:intron | 25.0% |
| ! | TTGTTTATCAAGATTGTATG+TGG | + | chr1_1:26747634-26747653 | Msa0016060:intron | 25.0% |
| !!! | GTTTATAATTTGCTATTTGC+TGG | + | chr1_1:26747662-26747681 | Msa0016060:intron | 25.0% |
| ! | GAGTAAGAAATATGAAACAT+TGG | + | chr1_1:26747768-26747787 | Msa0016060:intron | 25.0% |
| ! | TAATGATTGCATCAACAAAA+TGG | - | chr1_1:26747873-26747892 | None:intergenic | 25.0% |
| ! | TTGTTGATGCAATCATTAAA+AGG | + | chr1_1:26747875-26747894 | Msa0016060:intron | 25.0% |
| ! | TAATAAAATGGATGGATCAA+GGG | + | chr1_1:26748085-26748104 | Msa0016060:CDS | 25.0% |
| ! | AAGTAAAAGCAGATAAAATG+AGG | - | chr1_1:26748170-26748189 | None:intergenic | 25.0% |
| !! | TAAATCATTTTCCGATATTG+CGG | - | chr1_1:26748194-26748213 | None:intergenic | 25.0% |
| !!! | TTTTTGAGAAGAAATCAACA+AGG | + | chr1_1:26748239-26748258 | Msa0016060:CDS | 25.0% |
| ! | AAGGTAGTATATGAATATGA+AGG | - | chr1_1:26748299-26748318 | None:intergenic | 25.0% |
| ! | ATGGAATCATTTACCTAATA+AGG | - | chr1_1:26748318-26748337 | None:intergenic | 25.0% |
| !!! | CTAAGATTTTTTGTCACTAT+AGG | - | chr1_1:26748381-26748400 | None:intergenic | 25.0% |
| !! | TATTAGCTTATGTGTGTATA+CGG | + | chr1_1:26748417-26748436 | Msa0016060:intron | 25.0% |
| ! | TATTAGCATATGTGTGTATA+CGG | + | chr1_1:26748470-26748489 | Msa0016060:intron | 25.0% |
| ! | CCAATTTCTTAAATTATTGC+AGG | - | chr1_1:26748732-26748751 | None:intergenic | 25.0% |
| ! | CCTGCAATAATTTAAGAAAT+TGG | + | chr1_1:26748729-26748748 | Msa0016060:intron | 25.0% |
| ! | AACTTCAATATGAAACTTAC+CGG | - | chr1_1:26749422-26749441 | None:intergenic | 25.0% |
| ! | TAATCTTTGATCATGTTCAT+TGG | + | chr1_1:26749507-26749526 | Msa0016060:intron | 25.0% |
| !!! | TGCAATCTAGCTTTATAAAA+CGG | - | chr1_1:26749638-26749657 | None:intergenic | 25.0% |
| !!! | GTCATGTATCATTTTTTACA+GGG | + | chr1_1:26749811-26749830 | Msa0016060:three_prime_UTR | 25.0% |
| !!! | TCATGTATCATTTTTTACAG+GGG | + | chr1_1:26749812-26749831 | Msa0016060:three_prime_UTR | 25.0% |
| !! | AATAAACTTTTGTAGGATGA+TGG | + | chr1_1:26750012-26750031 | Msa0016060:three_prime_UTR | 25.0% |
| AATGTTTAGAAATGACGAGA+AGG | - | chr1_1:26744920-26744939 | None:intergenic | 30.0% | |
| GCTTATTTAAGCTTATCTAC+CGG | - | chr1_1:26745233-26745252 | None:intergenic | 30.0% | |
| TTAAATAAGCCAATCCAAAC+AGG | + | chr1_1:26745243-26745262 | Msa0016060:intron | 30.0% | |
| CAGAATTAGTTACTCCAATT+CGG | - | chr1_1:26745375-26745394 | None:intergenic | 30.0% | |
| TTCACGATTCATACTGAATA+AGG | - | chr1_1:26745410-26745429 | None:intergenic | 30.0% | |
| GAAATGAAAAGAAGTTGAAG+AGG | + | chr1_1:26745427-26745446 | Msa0016060:intron | 30.0% | |
| CTGAAATCTTGATTGTAAGT+TGG | - | chr1_1:26745482-26745501 | None:intergenic | 30.0% | |
| !! | ATGATTGATTTTTAGGGAGA+AGG | + | chr1_1:26745522-26745541 | Msa0016060:intron | 30.0% |
| !! | TGATTGATTTTTAGGGAGAA+GGG | + | chr1_1:26745523-26745542 | Msa0016060:intron | 30.0% |
| AATGAGAGAGATAAACACAA+TGG | + | chr1_1:26745635-26745654 | Msa0016060:intron | 30.0% | |
| ATGAGAGAGATAAACACAAT+GGG | + | chr1_1:26745636-26745655 | Msa0016060:intron | 30.0% | |
| AACTGAATAACTAGGAACTA+TGG | - | chr1_1:26746085-26746104 | None:intergenic | 30.0% | |
| GATTCACAAATGATGATACA+GGG | - | chr1_1:26746138-26746157 | None:intergenic | 30.0% | |
| !! | TGTGAATCGATTTTTACTCT+AGG | + | chr1_1:26746150-26746169 | Msa0016060:intron | 30.0% |
| ! | CTGTTATGTTTCTACAAACT+TGG | + | chr1_1:26746321-26746340 | Msa0016060:intron | 30.0% |
| AATCTGTAGAATCTATTACC+TGG | + | chr1_1:26746369-26746388 | Msa0016060:intron | 30.0% | |
| ATCTGTAGAATCTATTACCT+GGG | + | chr1_1:26746370-26746389 | Msa0016060:intron | 30.0% | |
| AACAGTAGAGGAAAATTCAT+TGG | + | chr1_1:26746397-26746416 | Msa0016060:intron | 30.0% | |
| !! | TTGGTTTAGTTCTGTCAAAT+CGG | + | chr1_1:26746416-26746435 | Msa0016060:intron | 30.0% |
| !! | ACTTGTTGTATGCTATCATA+TGG | + | chr1_1:26746460-26746479 | Msa0016060:intron | 30.0% |
| !! | GGTAAACTTTTAACTCAAGT+TGG | - | chr1_1:26746808-26746827 | None:intergenic | 30.0% |
| !! | AAACTTACTTGCTTTAGGAA+AGG | - | chr1_1:26747127-26747146 | None:intergenic | 30.0% |
| TTACTTGATCAACAGTTAAC+AGG | + | chr1_1:26747927-26747946 | Msa0016060:intron | 30.0% | |
| ATTCCACTGTGAATTCATTA+GGG | + | chr1_1:26748062-26748081 | Msa0016060:intron | 30.0% | |
| CATTAGGGTAATAAAATGGA+TGG | + | chr1_1:26748077-26748096 | Msa0016060:intron | 30.0% | |
| GTAATAAAATGGATGGATCA+AGG | + | chr1_1:26748084-26748103 | Msa0016060:CDS | 30.0% | |
| AATAAAATGGATGGATCAAG+GGG | + | chr1_1:26748086-26748105 | Msa0016060:CDS | 30.0% | |
| !! | AGCAAAAAGTGAATGGATTA+TGG | - | chr1_1:26748337-26748356 | None:intergenic | 30.0% |
| AAAAAAAGGGGAAAAGAGAA+GGG | - | chr1_1:26748920-26748939 | None:intergenic | 30.0% | |
| ATAAAACACTGACACAGTTA+CGG | + | chr1_1:26749127-26749146 | Msa0016060:intron | 30.0% | |
| ACCATGACTATCAGAAAAAA+GGG | - | chr1_1:26749395-26749414 | None:intergenic | 30.0% | |
| AACCATGACTATCAGAAAAA+AGG | - | chr1_1:26749396-26749415 | None:intergenic | 30.0% | |
| ! | ATGCTTGGATATTTTACACT+AGG | + | chr1_1:26749605-26749624 | Msa0016060:CDS | 30.0% |
| !! | GCAATCTAGCTTTATAAAAC+GGG | - | chr1_1:26749637-26749656 | None:intergenic | 30.0% |
| TATAAAGCTAGATTGCATGA+TGG | + | chr1_1:26749641-26749660 | Msa0016060:three_prime_UTR | 30.0% | |
| !!! | GGTCATGTATCATTTTTTAC+AGG | + | chr1_1:26749810-26749829 | Msa0016060:three_prime_UTR | 30.0% |
| ! | GCATGTCAATAAACTTTTGT+AGG | + | chr1_1:26750005-26750024 | Msa0016060:three_prime_UTR | 30.0% |
| ! | TTGGGTTGTTCTTAGTGATT+AGG | + | chr1_1:26745276-26745295 | Msa0016060:intron | 35.0% |
| !! | TGCTACATCACTATTTCTAC+CGG | - | chr1_1:26745313-26745332 | None:intergenic | 35.0% |
| !!! | TTTTTTCGGTTTACCATAGG+TGG | + | chr1_1:26745582-26745601 | Msa0016060:intron | 35.0% |
| GACAGTAGATGAAGTAAATC+CGG | - | chr1_1:26745611-26745630 | None:intergenic | 35.0% | |
| GTGTTTATCTCTCTCATTGA+TGG | - | chr1_1:26745633-26745652 | None:intergenic | 35.0% | |
| TGAGAGAGATAAACACAATG+GGG | + | chr1_1:26745637-26745656 | Msa0016060:intron | 35.0% | |
| GACACAAGTGATAGATTAGT+GGG | - | chr1_1:26745707-26745726 | None:intergenic | 35.0% | |
| TGACACAAGTGATAGATTAG+TGG | - | chr1_1:26745708-26745727 | None:intergenic | 35.0% | |
| TTGTGTCAATCTCTCGTTTA+TGG | + | chr1_1:26745720-26745739 | Msa0016060:intron | 35.0% | |
| ! | GTTTGGATTTGCTCCATTTA+CGG | - | chr1_1:26745747-26745766 | None:intergenic | 35.0% |
| CTTGTAGGTAATCCTATTAG+AGG | + | chr1_1:26745770-26745789 | Msa0016060:intron | 35.0% | |
| TATTTGCATCCGTGCTTTAT+AGG | - | chr1_1:26745807-26745826 | None:intergenic | 35.0% | |
| ATAAAGCACGGATGCAAATA+TGG | + | chr1_1:26745807-26745826 | Msa0016060:intron | 35.0% | |
| AGGAACTATGGAAAACCAAT+GGG | - | chr1_1:26746073-26746092 | None:intergenic | 35.0% | |
| TAGGAACTATGGAAAACCAA+TGG | - | chr1_1:26746074-26746093 | None:intergenic | 35.0% | |
| CGATTCACAAATGATGATAC+AGG | - | chr1_1:26746139-26746158 | None:intergenic | 35.0% | |
| TGTCTTGACACATGTACATA+TGG | + | chr1_1:26746346-26746365 | Msa0016060:intron | 35.0% | |
| TCTGTAGAATCTATTACCTG+GGG | + | chr1_1:26746371-26746390 | Msa0016060:intron | 35.0% | |
| !! | TGGTTTAGTTCTGTCAAATC+GGG | + | chr1_1:26746417-26746436 | Msa0016060:intron | 35.0% |
| AAATCTGCGATTGCAAATCA+AGG | + | chr1_1:26746620-26746639 | Msa0016060:intron | 35.0% | |
| CAAATATTCAATCACGCTCA+TGG | - | chr1_1:26746766-26746785 | None:intergenic | 35.0% | |
| CATGAGCGTGATTGAATATT+TGG | + | chr1_1:26746764-26746783 | Msa0016060:intron | 35.0% | |
| !! | TAACTCAAGTTGGTTCTCAA+CGG | - | chr1_1:26746798-26746817 | None:intergenic | 35.0% |
| !! | TCCAGATCATCACTTTTAGA+TGG | + | chr1_1:26746973-26746992 | Msa0016060:CDS | 35.0% |
| ACCATCTAAAAGTGATGATC+TGG | - | chr1_1:26746977-26746996 | None:intergenic | 35.0% | |
| ! | TTTAGATGGTCTTGATAGTC+TGG | + | chr1_1:26746987-26747006 | Msa0016060:CDS | 35.0% |
| ACACTTTAGTGCATTGAAGT+TGG | + | chr1_1:26747237-26747256 | Msa0016060:intron | 35.0% | |
| ! | CGGATCACTTGTTGAAATAT+TGG | + | chr1_1:26747315-26747334 | Msa0016060:intron | 35.0% |
| TAAGAAATTGGTTGCTCTGT+TGG | + | chr1_1:26747338-26747357 | Msa0016060:intron | 35.0% | |
| !! | CTGTTGGACTGTTTCTAATT+TGG | + | chr1_1:26747354-26747373 | Msa0016060:intron | 35.0% |
| GTAGATAAAAGGCCATCAAA+AGG | + | chr1_1:26747567-26747586 | Msa0016060:intron | 35.0% | |
| ! | GAATTCTCAAAGCCTTTTGA+TGG | - | chr1_1:26747582-26747601 | None:intergenic | 35.0% |
| ! | TGAGAATTCATGTTTGTTGC+AGG | + | chr1_1:26747593-26747612 | Msa0016060:intron | 35.0% |
| ATCAAGATTGTATGTGGACA+TGG | + | chr1_1:26747640-26747659 | Msa0016060:intron | 35.0% | |
| TCAGAAATTATGCAGCCTAT+TGG | + | chr1_1:26747814-26747833 | Msa0016060:intron | 35.0% | |
| ACTATGCTCTGTAATCCAAT+AGG | - | chr1_1:26747832-26747851 | None:intergenic | 35.0% | |
| GTTAACAGGTGATATACATG+AGG | + | chr1_1:26747941-26747960 | Msa0016060:intron | 35.0% | |
| GATTCCACTGTGAATTCATT+AGG | + | chr1_1:26748061-26748080 | Msa0016060:intron | 35.0% | |
| TTACCCTAATGAATTCACAG+TGG | - | chr1_1:26748068-26748087 | None:intergenic | 35.0% | |
| ! | GCTTTTACTTACCGCAATAT+CGG | + | chr1_1:26748180-26748199 | Msa0016060:intron | 35.0% |
| GTGTCAAAGCAAAAAGTGAA+TGG | - | chr1_1:26748344-26748363 | None:intergenic | 35.0% | |
| AAGCTAATATCATTGCAGAC+AGG | - | chr1_1:26748406-26748425 | None:intergenic | 35.0% | |
| ATGCTAATATCATTGCAGAC+AGG | - | chr1_1:26748459-26748478 | None:intergenic | 35.0% | |
| ATTTGATAGGTACATGCACA+AGG | + | chr1_1:26748851-26748870 | Msa0016060:intron | 35.0% | |
| AAAAAAGGGGAAAAGAGAAG+GGG | - | chr1_1:26748919-26748938 | None:intergenic | 35.0% | |
| CAAAAAAAGGGGAAAAGAGA+AGG | - | chr1_1:26748921-26748940 | None:intergenic | 35.0% | |
| !!! | TCTTTTCCCCTTTTTTTGAC+AGG | + | chr1_1:26748923-26748942 | Msa0016060:intron | 35.0% |
| CAAGTACCTGTCAAAAAAAG+GGG | - | chr1_1:26748932-26748951 | None:intergenic | 35.0% | |
| GCAAGTACCTGTCAAAAAAA+GGG | - | chr1_1:26748933-26748952 | None:intergenic | 35.0% | |
| TGCAAGTACCTGTCAAAAAA+AGG | - | chr1_1:26748934-26748953 | None:intergenic | 35.0% | |
| TATTGCATCTGTCTACATGT+CGG | - | chr1_1:26749174-26749193 | None:intergenic | 35.0% | |
| GATACTATTACTGACACATG+TGG | - | chr1_1:26749227-26749246 | None:intergenic | 35.0% | |
| AAAAAAGGGGAAAAGAGAAG+GGG | - | chr1_1:26748919-26748938 | None:intergenic | 35.0% | |
| GAAAAAAGGGGAAAAGAGAA+GGG | - | chr1_1:26749382-26749401 | None:intergenic | 35.0% | |
| AGAAAAAAGGGGAAAAGAGA+AGG | - | chr1_1:26749383-26749402 | None:intergenic | 35.0% | |
| CCATGACTATCAGAAAAAAG+GGG | - | chr1_1:26749394-26749413 | None:intergenic | 35.0% | |
| GAATCAACATCTGTATTCAG+TGG | - | chr1_1:26749451-26749470 | None:intergenic | 35.0% | |
| ! | TTTTACAGCACATGAACAAC+AGG | - | chr1_1:26749684-26749703 | None:intergenic | 35.0% |
| TTCATGTGCTGTAAAATGTC+CGG | + | chr1_1:26749688-26749707 | Msa0016060:three_prime_UTR | 35.0% | |
| AAATGATACATGACCATGTG+AGG | - | chr1_1:26749805-26749824 | None:intergenic | 35.0% | |
| AAGAACAACCCAACCACTAA+AGG | - | chr1_1:26745269-26745288 | None:intergenic | 40.0% | |
| TTCAACTCGTTCAACCGAAT+TGG | + | chr1_1:26745358-26745377 | Msa0016060:intron | 40.0% | |
| CGAAAAAAAAACTCTCGCAG+CGG | - | chr1_1:26745570-26745589 | None:intergenic | 40.0% | |
| !!! | CGCTGCGAGAGTTTTTTTTT+CGG | + | chr1_1:26745568-26745587 | Msa0016060:intron | 40.0% |
| AAACACAATGGGGAGATTAG+TGG | + | chr1_1:26745647-26745666 | Msa0016060:intron | 40.0% | |
| AACACAATGGGGAGATTAGT+GGG | + | chr1_1:26745648-26745667 | Msa0016060:intron | 40.0% | |
| AGATTAGTGGGATCCATTAG+TGG | + | chr1_1:26745660-26745679 | Msa0016060:intron | 40.0% | |
| GATTAGTGGGATCCATTAGT+GGG | + | chr1_1:26745661-26745680 | Msa0016060:intron | 40.0% | |
| ATTAGTGGGATCCATTAGTG+GGG | + | chr1_1:26745662-26745681 | Msa0016060:intron | 40.0% | |
| !! | GTGGGACTCATTTTAACAAG+TGG | - | chr1_1:26745689-26745708 | None:intergenic | 40.0% |
| TCTCGTTTATGGACCGTAAA+TGG | + | chr1_1:26745731-26745750 | Msa0016060:intron | 40.0% | |
| GCAAATCCAAACTCTCTTGT+AGG | + | chr1_1:26745755-26745774 | Msa0016060:intron | 40.0% | |
| GGATTACCTACAAGAGAGTT+TGG | - | chr1_1:26745764-26745783 | None:intergenic | 40.0% | |
| ! | AATCCTATTAGAGGTGTGTG+TGG | + | chr1_1:26745779-26745798 | Msa0016060:intron | 40.0% |
| ! | ATCCTATTAGAGGTGTGTGT+GGG | + | chr1_1:26745780-26745799 | Msa0016060:intron | 40.0% |
| ATACAACATGGACACTGACA+CGG | + | chr1_1:26745837-26745856 | Msa0016060:intron | 40.0% | |
| TGTAATCATAGGGATCGTGT+TGG | + | chr1_1:26745890-26745909 | Msa0016060:intron | 40.0% | |
| ATAGTGTGGGACACTAAATG+TGG | + | chr1_1:26745975-26745994 | Msa0016060:intron | 40.0% | |
| GAAAAGCTTCAAATTCCAGC+TGG | - | chr1_1:26746009-26746028 | None:intergenic | 40.0% | |
| GAACTATGGAAAACCAATGG+GGG | - | chr1_1:26746071-26746090 | None:intergenic | 40.0% | |
| GGAACTATGGAAAACCAATG+GGG | - | chr1_1:26746072-26746091 | None:intergenic | 40.0% | |
| CTGTAGAATCTATTACCTGG+GGG | + | chr1_1:26746372-26746391 | Msa0016060:intron | 40.0% | |
| TGTAGAATCTATTACCTGGG+GGG | + | chr1_1:26746373-26746392 | Msa0016060:intron | 40.0% | |
| TCATGATACCGCTGGAAATT+AGG | - | chr1_1:26746505-26746524 | None:intergenic | 40.0% | |
| ATATTCAATCACGCTCATGG+TGG | - | chr1_1:26746763-26746782 | None:intergenic | 40.0% | |
| AAAGTGATGATCTGGATGAC+CGG | - | chr1_1:26746969-26746988 | None:intergenic | 40.0% | |
| AACAGGTGATATACATGAGG+AGG | + | chr1_1:26747944-26747963 | Msa0016060:CDS | 40.0% | |
| GTCATAACAGTATGCTCGAT+CGG | + | chr1_1:26747973-26747992 | Msa0016060:CDS | 40.0% | |
| TCATAACAGTATGCTCGATC+GGG | + | chr1_1:26747974-26747993 | Msa0016060:CDS | 40.0% | |
| ! | AACCATGGATCGATTCAAGA+AGG | + | chr1_1:26748121-26748140 | Msa0016060:CDS | 40.0% |
| TACCTTCTTGAATCGATCCA+TGG | - | chr1_1:26748126-26748145 | None:intergenic | 40.0% | |
| AAGGAAAACATGCTCACTTG+TGG | + | chr1_1:26748258-26748277 | Msa0016060:CDS | 40.0% | |
| AGGAAAACATGCTCACTTGT+GGG | + | chr1_1:26748259-26748278 | Msa0016060:CDS | 40.0% | |
| !! | CAGACAGGTTCTAAGATTCT+CGG | - | chr1_1:26748444-26748463 | None:intergenic | 40.0% |
| CGTGTGTACACAATTCTCTA+AGG | + | chr1_1:26748654-26748673 | Msa0016060:intron | 40.0% | |
| CAACACAATACTGACACATG+TGG | - | chr1_1:26748771-26748790 | None:intergenic | 40.0% | |
| CACATGTGTCAGTATTGTGT+TGG | + | chr1_1:26748769-26748788 | Msa0016060:intron | 40.0% | |
| ! | ATTGTGTTGGTATCACACAC+CGG | + | chr1_1:26748782-26748801 | Msa0016060:intron | 40.0% |
| AAAAAGGGGAAAAGAGAAGG+GGG | - | chr1_1:26748918-26748937 | None:intergenic | 40.0% | |
| ! | ATCGTGTTGATGTCAAACAC+CGG | + | chr1_1:26749244-26749263 | Msa0016060:intron | 40.0% |
| AAAAAGGGGAAAAGAGAAGG+GGG | - | chr1_1:26748918-26748937 | None:intergenic | 40.0% | |
| !!! | CCCCTTTTTTCTGATAGTCA+TGG | + | chr1_1:26749391-26749410 | Msa0016060:intron | 40.0% |
| TCTGATAGTCATGGTTAAGC+CGG | + | chr1_1:26749400-26749419 | Msa0016060:intron | 40.0% | |
| TAGATTGCATGATGGTCGTT+TGG | + | chr1_1:26749649-26749668 | Msa0016060:three_prime_UTR | 40.0% | |
| AGTTTCAAACCACATGCCAA+CGG | - | chr1_1:26749716-26749735 | None:intergenic | 40.0% | |
| TCCATGACAATGGTGTGTTT+GGG | - | chr1_1:26749935-26749954 | None:intergenic | 40.0% | |
| ATCCATGACAATGGTGTGTT+TGG | - | chr1_1:26749936-26749955 | None:intergenic | 40.0% | |
| ! | TTATCTGGGATCCATGACAA+TGG | - | chr1_1:26749945-26749964 | None:intergenic | 40.0% |
| CATGTGATTCCAGCTTATCT+GGG | - | chr1_1:26749959-26749978 | None:intergenic | 40.0% | |
| CGAAGATCGTGCATTGGAAT+TGG | - | chr1_1:26745082-26745101 | None:intergenic | 45.0% | |
| AAATGGCGAAGATCGTGCAT+TGG | - | chr1_1:26745088-26745107 | None:intergenic | 45.0% | |
| AGTCTCACACATGCTTATGC+CGG | + | chr1_1:26745211-26745230 | Msa0016060:intron | 45.0% | |
| CACTAAAGGCCTGTTTGGAT+TGG | - | chr1_1:26745255-26745274 | None:intergenic | 45.0% | |
| CAATCCAAACAGGCCTTTAG+TGG | + | chr1_1:26745253-26745272 | Msa0016060:intron | 45.0% | |
| CAAACAGGCCTTTAGTGGTT+GGG | + | chr1_1:26745258-26745277 | Msa0016060:intron | 45.0% | |
| ! | TGATTAGGTTGTGCTTGTGC+CGG | + | chr1_1:26745291-26745310 | Msa0016060:intron | 45.0% |
| TAACAAGTGGACCCCACTAA+TGG | - | chr1_1:26745676-26745695 | None:intergenic | 45.0% | |
| TGTGTGGGACCTATAAAGCA+CGG | + | chr1_1:26745795-26745814 | Msa0016060:intron | 45.0% | |
| ACGGATGCAAATATGGACAC+CGG | + | chr1_1:26745814-26745833 | Msa0016060:intron | 45.0% | |
| TATGGACACCGGATACAACA+TGG | + | chr1_1:26745825-26745844 | Msa0016060:intron | 45.0% | |
| GTCAGTGTCCATGTTGTATC+CGG | - | chr1_1:26745836-26745855 | None:intergenic | 45.0% | |
| GATTAGGTGTATCCCAGTGA+CGG | - | chr1_1:26745936-26745955 | None:intergenic | 45.0% | |
| !! | TATGAAGCACTGACACTCCT+CGG | - | chr1_1:26745958-26745977 | None:intergenic | 45.0% |
| AGTGTCAGTGCTTCATAGTG+TGG | + | chr1_1:26745961-26745980 | Msa0016060:intron | 45.0% | |
| GTGTCAGTGCTTCATAGTGT+GGG | + | chr1_1:26745962-26745981 | Msa0016060:intron | 45.0% | |
| CTTCAAATTCCAGCTGGAAG+AGG | - | chr1_1:26746003-26746022 | None:intergenic | 45.0% | |
| ATGGAAAACCAATGGGGGTT+GGG | - | chr1_1:26746066-26746085 | None:intergenic | 45.0% | |
| TATGGAAAACCAATGGGGGT+TGG | - | chr1_1:26746067-26746086 | None:intergenic | 45.0% | |
| CATTAGACTCATGATACCGC+TGG | - | chr1_1:26746513-26746532 | None:intergenic | 45.0% | |
| ! | AGATGGTCTTGATAGTCTGG+AGG | + | chr1_1:26746990-26747009 | Msa0016060:CDS | 45.0% |
| ATATGTTGCCATGTCGCAAC+TGG | + | chr1_1:26747707-26747726 | Msa0016060:intron | 45.0% | |
| ! | TGGATCAAGGGGTATGATGT+TGG | + | chr1_1:26748097-26748116 | Msa0016060:CDS | 45.0% |
| ! | GGATCAAGGGGTATGATGTT+GGG | + | chr1_1:26748098-26748117 | Msa0016060:CDS | 45.0% |
| TTACAGACTGCAGTCGATCT+CGG | - | chr1_1:26748497-26748516 | None:intergenic | 45.0% | |
| TTCACACAGTCATGCGTTCT+AGG | + | chr1_1:26748530-26748549 | Msa0016060:intron | 45.0% | |
| !! | CTAAGGCACTGACACAGTTA+CGG | + | chr1_1:26748671-26748690 | Msa0016060:intron | 45.0% |
| ! | CTGTAGAACAAAGGCATGTC+CGG | - | chr1_1:26748804-26748823 | None:intergenic | 45.0% |
| GCACAGACACTGTAGAACAA+AGG | - | chr1_1:26748813-26748832 | None:intergenic | 45.0% | |
| GATAGGTACATGCACAAGGT+AGG | + | chr1_1:26748855-26748874 | Msa0016060:intron | 45.0% | |
| TTCACGCTGTCATGTGTTCT+TGG | + | chr1_1:26748985-26749004 | Msa0016060:intron | 45.0% | |
| GTTCTTGGCCATCTGATCAA+TGG | + | chr1_1:26749000-26749019 | Msa0016060:intron | 45.0% | |
| TGATGTTAAATCACGACGCC+TGG | - | chr1_1:26749026-26749045 | None:intergenic | 45.0% | |
| ! | CTGTAGAACAAAGGTGTGTC+CGG | - | chr1_1:26749266-26749285 | None:intergenic | 45.0% |
| GCACAGACACTGTAGAACAA+AGG | - | chr1_1:26748813-26748832 | None:intergenic | 45.0% | |
| TGTAAAATGTCCGGAACCGT+TGG | + | chr1_1:26749697-26749716 | Msa0016060:three_prime_UTR | 45.0% | |
| GTTTACTTTCCCTCCTCACA+TGG | + | chr1_1:26749789-26749808 | Msa0016060:three_prime_UTR | 45.0% | |
| GATACATGACCATGTGAGGA+GGG | - | chr1_1:26749801-26749820 | None:intergenic | 45.0% | |
| TGATACATGACCATGTGAGG+AGG | - | chr1_1:26749802-26749821 | None:intergenic | 45.0% | |
| TCCCAAACACACCATTGTCA+TGG | + | chr1_1:26749931-26749950 | Msa0016060:three_prime_UTR | 45.0% | |
| CCATGTGATTCCAGCTTATC+TGG | - | chr1_1:26749960-26749979 | None:intergenic | 45.0% | |
| CCAGATAAGCTGGAATCACA+TGG | + | chr1_1:26749957-26749976 | Msa0016060:three_prime_UTR | 45.0% | |
| CCAACCACTAAAGGCCTGTT+TGG | - | chr1_1:26745260-26745279 | None:intergenic | 50.0% | |
| CCAAACAGGCCTTTAGTGGT+TGG | + | chr1_1:26745257-26745276 | Msa0016060:intron | 50.0% | |
| GGTTTACCATAGGTGGAGTC+CGG | + | chr1_1:26745589-26745608 | Msa0016060:intron | 50.0% | |
| GTAAATCCGGACTCCACCTA+TGG | - | chr1_1:26745598-26745617 | None:intergenic | 50.0% | |
| GTCCCACACACACCTCTAAT+AGG | - | chr1_1:26745785-26745804 | None:intergenic | 50.0% | |
| ! | CATAGGGATCGTGTTGGTGT+CGG | + | chr1_1:26745896-26745915 | Msa0016060:intron | 50.0% |
| ACTGGGATACACCTAATCCG+AGG | + | chr1_1:26745938-26745957 | Msa0016060:intron | 50.0% | |
| AATGTGGTACCTCTTCCAGC+TGG | + | chr1_1:26745991-26746010 | Msa0016060:intron | 50.0% | |
| ! | TGAAGCTTTTCGCCAAGCTG+TGG | + | chr1_1:26746018-26746037 | Msa0016060:intron | 50.0% |
| ! | GAAGCTTTTCGCCAAGCTGT+GGG | + | chr1_1:26746019-26746038 | Msa0016060:intron | 50.0% |
| ! | TGGTCTTGATAGTCTGGAGG+AGG | + | chr1_1:26746993-26747012 | Msa0016060:CDS | 50.0% |
| ! | GGTCTTGATAGTCTGGAGGA+GGG | + | chr1_1:26746994-26747013 | Msa0016060:CDS | 50.0% |
| TCTGGAGGAGGGTGGTTTAA+GGG | + | chr1_1:26747005-26747024 | Msa0016060:CDS | 50.0% | |
| ! | TCTGTCGTGCAGAGTGTCTA+TGG | - | chr1_1:26747079-26747098 | None:intergenic | 50.0% |
| TAACAGTATGCTCGATCGGG+TGG | + | chr1_1:26747977-26747996 | Msa0016060:CDS | 50.0% | |
| GGGTATGATGTTGGGAACCA+TGG | + | chr1_1:26748106-26748125 | Msa0016060:CDS | 50.0% | |
| ! | CGTTCTAGGCCATCTGATCA+TGG | + | chr1_1:26748544-26748563 | Msa0016060:intron | 50.0% |
| GCCATCTGATCATGGTCAGA+CGG | + | chr1_1:26748552-26748571 | Msa0016060:intron | 50.0% | |
| ACCGTCTGACCATGATCAGA+TGG | - | chr1_1:26748556-26748575 | None:intergenic | 50.0% | |
| AACACATGACAGCGTGAACG+CGG | - | chr1_1:26748983-26749002 | None:intergenic | 50.0% | |
| ! | CGGTGTCAGTATAGTGTCTG+AGG | - | chr1_1:26749154-26749173 | None:intergenic | 50.0% |
| TGCAAACTCGCACACTTTGC+AGG | + | chr1_1:26749582-26749601 | Msa0016060:intron | 50.0% | |
| AAACCACATGCCAACGGTTC+CGG | - | chr1_1:26749710-26749729 | None:intergenic | 50.0% | |
| GTCATGGATCCCAGATAAGC+TGG | + | chr1_1:26749947-26749966 | Msa0016060:three_prime_UTR | 50.0% | |
| ! | GCACTGACACTCCTCGGATT+AGG | - | chr1_1:26745952-26745971 | None:intergenic | 55.0% |
| GGGGTTGGGTCTAGCAAAAG+GGG | - | chr1_1:26746052-26746071 | None:intergenic | 55.0% | |
| GGGGGTTGGGTCTAGCAAAA+GGG | - | chr1_1:26746053-26746072 | None:intergenic | 55.0% | |
| TGGGGGTTGGGTCTAGCAAA+AGG | - | chr1_1:26746054-26746073 | None:intergenic | 55.0% | |
| TTGCTAGACCCAACCCCCAT+TGG | + | chr1_1:26746055-26746074 | Msa0016060:intron | 55.0% | |
| TACCTGGGGGGAAACAGTAG+AGG | + | chr1_1:26746385-26746404 | Msa0016060:intron | 55.0% | |
| TTCCTCTACTGTTTCCCCCC+AGG | - | chr1_1:26746390-26746409 | None:intergenic | 55.0% | |
| ! | CTTGATAGTCTGGAGGAGGG+TGG | + | chr1_1:26746997-26747016 | Msa0016060:CDS | 55.0% |
| GTCTGGAGGAGGGTGGTTTA+AGG | + | chr1_1:26747004-26747023 | Msa0016060:CDS | 55.0% | |
| GTAGCATGCCAGTTGCGACA+TGG | - | chr1_1:26747718-26747737 | None:intergenic | 55.0% | |
| TGGCCATCTGATCAATGGCC+AGG | + | chr1_1:26749005-26749024 | Msa0016060:intron | 55.0% | |
| ACGCCTGGCCATTGATCAGA+TGG | - | chr1_1:26749011-26749030 | None:intergenic | 55.0% | |
| CGCACACTTTGCAGGATGCT+TGG | + | chr1_1:26749590-26749609 | Msa0016060:intron | 55.0% | |
| TCCGACACGTGTCCGTCACT+GGG | + | chr1_1:26745921-26745940 | Msa0016060:intron | 60.0% | |
| !! | TCCCAGTGACGGACACGTGT+CGG | - | chr1_1:26745925-26745944 | None:intergenic | 60.0% |
| TGTCCGGAACCGTTGGCATG+TGG | + | chr1_1:26749704-26749723 | Msa0016060:three_prime_UTR | 60.0% | |
| CTCCGACACGTGTCCGTCAC+TGG | + | chr1_1:26745920-26745939 | Msa0016060:intron | 65.0% | |
| GGGGCTAGACTCCCACAGCT+TGG | - | chr1_1:26746033-26746052 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 26744884 | 26750071 | 26744884 | ID=Msa0016060;Name=Msa0016060 |
| chr1_1 | mRNA | 26744884 | 26750071 | 26744884 | ID=Msa0016060-mRNA-1;Parent=Msa0016060;Name=Msa0016060-mRNA-1;_AED=0.05;_eAED=0.05;_QI=121|1|1|1|0.6|0.5|6|440|133 |
| chr1_1 | exon | 26744884 | 26745018 | 26744884 | ID=Msa0016060-mRNA-1:exon:8967;Parent=Msa0016060-mRNA-1 |
| chr1_1 | exon | 26746960 | 26747116 | 26746960 | ID=Msa0016060-mRNA-1:exon:8968;Parent=Msa0016060-mRNA-1 |
| chr1_1 | exon | 26747942 | 26747998 | 26747942 | ID=Msa0016060-mRNA-1:exon:8969;Parent=Msa0016060-mRNA-1 |
| chr1_1 | exon | 26748083 | 26748142 | 26748083 | ID=Msa0016060-mRNA-1:exon:8970;Parent=Msa0016060-mRNA-1 |
| chr1_1 | exon | 26748238 | 26748323 | 26748238 | ID=Msa0016060-mRNA-1:exon:8971;Parent=Msa0016060-mRNA-1 |
| chr1_1 | exon | 26749604 | 26750071 | 26749604 | ID=Msa0016060-mRNA-1:exon:8972;Parent=Msa0016060-mRNA-1 |
| chr1_1 | five_prime_UTR | 26744884 | 26745004 | 26744884 | ID=Msa0016060-mRNA-1:five_prime_utr;Parent=Msa0016060-mRNA-1 |
| chr1_1 | CDS | 26745005 | 26745018 | 26745005 | ID=Msa0016060-mRNA-1:cds;Parent=Msa0016060-mRNA-1 |
| chr1_1 | CDS | 26746960 | 26747116 | 26746960 | ID=Msa0016060-mRNA-1:cds;Parent=Msa0016060-mRNA-1 |
| chr1_1 | CDS | 26747942 | 26747998 | 26747942 | ID=Msa0016060-mRNA-1:cds;Parent=Msa0016060-mRNA-1 |
| chr1_1 | CDS | 26748083 | 26748142 | 26748083 | ID=Msa0016060-mRNA-1:cds;Parent=Msa0016060-mRNA-1 |
| chr1_1 | CDS | 26748238 | 26748323 | 26748238 | ID=Msa0016060-mRNA-1:cds;Parent=Msa0016060-mRNA-1 |
| chr1_1 | CDS | 26749604 | 26749631 | 26749604 | ID=Msa0016060-mRNA-1:cds;Parent=Msa0016060-mRNA-1 |
| chr1_1 | three_prime_UTR | 26749632 | 26750071 | 26749632 | ID=Msa0016060-mRNA-1:three_prime_utr;Parent=Msa0016060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
