AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0618970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618970 MtrunA17_Chr8g0383571 99.320 441 3 0 1 441 1 441 0.0 893
Msa0618970 MtrunA17_Chr8g0383531 97.260 438 12 0 4 441 1 438 0.0 870
Msa0618970 MtrunA17_Chr5g0431161 48.352 91 47 0 101 191 35 125 4.44e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618970 AT5G09900.2 81.633 441 80 1 1 440 1 441 0.0 728
Msa0618970 AT5G09900.1 81.179 441 82 1 1 440 1 441 0.0 725
Msa0618970 AT5G64760.2 78.685 441 93 1 1 440 1 441 0.0 697
Msa0618970 AT5G64760.1 78.458 441 94 1 1 440 1 441 0.0 694
Msa0618970 AT5G64760.3 80.048 421 83 1 21 440 1 421 0.0 679
Msa0618970 AT5G09900.3 79.070 344 71 1 1 343 1 344 0.0 546

Find 112 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCTTCAAAGCTGCTTTA+TGG 0.134030 4_2:-69942772 None:intergenic
AAACAACGATCTGATCATTT+AGG 0.167639 4_2:-69938359 None:intergenic
GACCATATTATCACCTTCTT+TGG 0.222140 4_2:-69939799 None:intergenic
CATTTGAGTATATGTAAATT+TGG 0.222921 4_2:+69943401 Msa0618970:three_prime_UTR
TGAAATTTGCCGCTGCTATA+AGG 0.251024 4_2:+69941648 Msa0618970:CDS
CATTGCTATCCTTTGCTGTT+TGG 0.295822 4_2:-69942661 None:intergenic
AACAACGATCTGATCATTTA+GGG 0.304111 4_2:-69938358 None:intergenic
GTGGTTGGTTGAGTGAAGTT+TGG 0.305336 4_2:-69938075 None:intergenic
CAAGAAACTTGCCAAGATTA+AGG 0.314974 4_2:+69939342 Msa0618970:CDS
TCTTATCAGGTGGAAACTTT+TGG 0.318210 4_2:+69939522 Msa0618970:intron
TCATCCAATGGACAGCTCTT+TGG 0.322854 4_2:+69942081 Msa0618970:CDS
TGCCTCCTCAATATGTGATA+TGG 0.330493 4_2:+69942972 Msa0618970:CDS
CATCCAATGGACAGCTCTTT+GGG 0.333432 4_2:+69942082 Msa0618970:CDS
ATACCTTACCACCGACTTAC+CGG 0.339321 4_2:+69943196 Msa0618970:three_prime_UTR
CCCCTGTTCTTCCTTAATCT+TGG 0.345178 4_2:-69939353 None:intergenic
ACCATATTATCACCTTCTTT+GGG 0.346638 4_2:-69939798 None:intergenic
AGGATAACATACTGGAAGTT+TGG 0.347252 4_2:-69941939 None:intergenic
TGGTTGGTTGAGTGAAGTTT+GGG 0.364594 4_2:-69938074 None:intergenic
GTTCTTCATATTCTTTCGTT+TGG 0.365406 4_2:+69943271 Msa0618970:three_prime_UTR
TATGGACTGAAGTTGCCTTA+TGG 0.366194 4_2:+69942990 Msa0618970:CDS
GTTCAGGCCATTATGCGTTC+AGG 0.367944 4_2:+69943090 Msa0618970:CDS
ATGGACTGAAGTTGCCTTAT+GGG 0.381336 4_2:+69942991 Msa0618970:CDS
TAACTCATGGGCAGCAAACT+TGG 0.387347 4_2:+69942691 Msa0618970:CDS
TGCCAAGATTAAGGAAGAAC+AGG 0.388343 4_2:+69939351 Msa0618970:CDS
TTTATTACGAGCTAATGATT+AGG 0.390801 4_2:+69939868 Msa0618970:CDS
ATTCGACATAGATGCATCTA+AGG 0.393010 4_2:+69939764 Msa0618970:CDS
TGCAGATATTCCGTCTCTAC+TGG 0.398939 4_2:+69939833 Msa0618970:CDS
TAGATCAAACATTATCATAA+AGG 0.400969 4_2:-69943370 None:intergenic
TATCTACCCTGAACGCATAA+TGG 0.404083 4_2:-69943097 None:intergenic
GCCCAAAGAAGGTGATAATA+TGG 0.427248 4_2:+69939797 Msa0618970:CDS
TTCAAGATAATCATTGTTGT+GGG 0.433017 4_2:-69941629 None:intergenic
GGTCCATAAAGCAGCTTTGA+AGG 0.436788 4_2:+69942769 Msa0618970:CDS
TGAGAAGCATCTGTCTGATA+TGG 0.444884 4_2:+69942583 Msa0618970:CDS
ATAATGGCCTGAACGCATAA+TGG 0.449078 4_2:-69943081 None:intergenic
TCAATACGAGTTTCAATATC+CGG 0.449985 4_2:-69939138 None:intergenic
ATGTTGAGATTGAGAGAGCT+AGG 0.451064 4_2:+69939314 Msa0618970:CDS
GCATCTATGTCGAATACTCT+TGG 0.459620 4_2:-69939756 None:intergenic
TTTCAAGATAATCATTGTTG+TGG 0.472189 4_2:-69941630 None:intergenic
AACTACATACAAGACCGTTT+AGG 0.477075 4_2:-69943226 None:intergenic
TTCGTTTCTGTAGGCAAACA+TGG 0.483039 4_2:+69938203 Msa0618970:intron
TATGGTTGTTACCAAGGCTC+TGG 0.489637 4_2:+69942601 Msa0618970:CDS
TCGATTGTGCCTAGACCGCC+AGG 0.490883 4_2:+69939695 Msa0618970:CDS
TTTGACAATGAGATGGCCTC+TGG 0.492291 4_2:+69942122 Msa0618970:CDS
TAGGATCTTGTCCGGTAAGT+CGG 0.493217 4_2:-69943207 None:intergenic
ATCGAAGATTACCATGGTTG+TGG 0.500341 4_2:-69938094 None:intergenic
ACGGTCTTGTATGTAGTTAG+TGG 0.500674 4_2:+69943231 Msa0618970:three_prime_UTR
GGAGAAACTGCTTGATCTTG+TGG 0.501917 4_2:+69942712 Msa0618970:CDS
CAAGGTGGAATTTAAAAGAC+TGG 0.502902 4_2:-69941892 None:intergenic
AATCTTTGCAACCAGAGCCT+TGG 0.507062 4_2:-69942612 None:intergenic
GCAAAGATTGACAGACCAAT+GGG 0.508334 4_2:+69942626 Msa0618970:CDS
TTGTATCAAAATACTATGCA+AGG 0.512334 4_2:+69942321 Msa0618970:CDS
GCAATGATGTACTTAACTCA+TGG 0.517832 4_2:+69942678 Msa0618970:CDS
TTACCGGACAAGATCCTAAA+CGG 0.522572 4_2:+69943212 Msa0618970:three_prime_UTR
TTCAGGCCATTATGCGTTCA+GGG 0.522927 4_2:+69943091 Msa0618970:CDS
ACATTGAACAGTGTATCTGC+TGG 0.524074 4_2:+69939171 Msa0618970:CDS
GGACATAATCCTGGCGGTCT+AGG 0.525396 4_2:-69939704 None:intergenic
TCTCCCAAAGAGCTGTCCAT+TGG 0.527502 4_2:-69942085 None:intergenic
TTCAAATGAGAATCCCCATA+AGG 0.527715 4_2:-69943005 None:intergenic
CAAAGCTGCTTTATGGACCA+TGG 0.531327 4_2:-69942765 None:intergenic
ACGACGCGGTCAGCTCAAGC+AGG 0.533278 4_2:+69938389 Msa0618970:CDS
TTTGTGCACGGACATAATCC+TGG 0.535226 4_2:-69939713 None:intergenic
AGACCGTTTAGGATCTTGTC+CGG 0.536612 4_2:-69943215 None:intergenic
GTCTGATATGGTTGTTACCA+AGG 0.537128 4_2:+69942595 Msa0618970:CDS
TGTAACAGCTATGGTACAGC+AGG 0.546142 4_2:+69939092 Msa0618970:CDS
TGAAATGTTGCTCACTGTGT+TGG 0.548481 4_2:+69943024 Msa0618970:CDS
TGGAAACAGACTATTCCCAT+TGG 0.557174 4_2:-69942641 None:intergenic
TGAGATTGAGAGAGCTAGGT+TGG 0.557330 4_2:+69939318 Msa0618970:CDS
TTCTTGAGAGTATTTGTGCA+CGG 0.563823 4_2:-69939725 None:intergenic
AGTAGAGACGGAATATCTGC+AGG 0.564085 4_2:-69939831 None:intergenic
TTTATTGTGCAAGTGCAGCT+TGG 0.565928 4_2:+69943330 Msa0618970:three_prime_UTR
CATTGAACAGTGTATCTGCT+GGG 0.568762 4_2:+69939172 Msa0618970:CDS
TGTCCGGTAAGTCGGTGGTA+AGG 0.572093 4_2:-69943199 None:intergenic
TGCAAAGATTGACAGACCAA+TGG 0.572504 4_2:+69942625 Msa0618970:CDS
GAGGAAAATATGTTGGTGCT+TGG 0.574826 4_2:+69941842 Msa0618970:CDS
TGGACTGAAGTTGCCTTATG+GGG 0.576818 4_2:+69942992 Msa0618970:CDS
GAGAAACAAATGCGTCTCGC+CGG 0.580321 4_2:+69938264 Msa0618970:CDS
CGTCTCGCCGGCGAAATAGT+CGG 0.582458 4_2:+69938276 Msa0618970:CDS
ATCACAGGCTGTAACAGCTA+TGG 0.585065 4_2:+69939083 Msa0618970:intron
CAATGATGTACTTAACTCAT+GGG 0.587731 4_2:+69942679 Msa0618970:CDS
TCTAGTGCCGACTATTTCGC+CGG 0.590784 4_2:-69938283 None:intergenic
TTTAAAAGACTGGACTGCAT+CGG 0.598019 4_2:-69941882 None:intergenic
TGATTTGATGCAAGAAATTG+CGG 0.598896 4_2:+69939393 Msa0618970:CDS
ACAATGAGATGGCCTCTGGA+AGG 0.600754 4_2:+69942126 Msa0618970:CDS
AGATCCTGAGGAAAATATGT+TGG 0.600984 4_2:+69941835 Msa0618970:intron
AGATAGATTTCTATCCTCCA+AGG 0.603704 4_2:-69941910 None:intergenic
TTTGAAGCAGCTGGTCACCA+TGG 0.604172 4_2:+69942055 Msa0618970:CDS
TGTTTCAACTCCAGTAGAGA+CGG 0.610635 4_2:-69939843 None:intergenic
CATATATTGCCTTATAGCAG+CGG 0.613022 4_2:-69941657 None:intergenic
GCAATATATTGACGAGACAC+CGG 0.613740 4_2:+69939119 Msa0618970:CDS
AAGATTACCATGGTTGTGGT+TGG 0.614101 4_2:-69938090 None:intergenic
TCAGTCCATATCACATATTG+AGG 0.615157 4_2:-69942977 None:intergenic
AGGTGATAATATGGTCGAAG+AGG 0.618539 4_2:+69939806 Msa0618970:CDS
GAACGAGTTTGACAATGAGA+TGG 0.619618 4_2:+69942115 Msa0618970:CDS
CACTCAACCAACCACAACCA+TGG 0.619704 4_2:+69938083 Msa0618970:exon
CCTACCGGAATAAAATCAGT+AGG 0.625120 4_2:-69941703 None:intergenic
GCCAAGATTAAGGAAGAACA+GGG 0.626902 4_2:+69939352 Msa0618970:CDS
AATTTCTTGCATCAAATCAG+CGG 0.629438 4_2:-69939389 None:intergenic
TCACCATGGAAGTCATCCAA+TGG 0.630891 4_2:+69942069 Msa0618970:CDS
GAACAGTGTATCTGCTGGGA+AGG 0.631990 4_2:+69939176 Msa0618970:CDS
AGTCTGTTTCCAAACAGCAA+AGG 0.634017 4_2:+69942652 Msa0618970:CDS
CTGGACTGCATCGGTGAATG+TGG 0.634478 4_2:-69941873 None:intergenic
GTCCATATCACATATTGAGG+AGG 0.639905 4_2:-69942974 None:intergenic
TCAAATACACAAGGAAACCA+TGG 0.640379 4_2:+69942748 Msa0618970:CDS
AGAACAGGGGCTTATAGCTG+AGG 0.642737 4_2:+69939366 Msa0618970:CDS
GATCTTGTCCGGTAAGTCGG+TGG 0.660906 4_2:-69943204 None:intergenic
TGTTGCTCACTGTGTTGGTG+AGG 0.668735 4_2:+69943029 Msa0618970:CDS
TCTTGCATATACAGATCCTG+AGG 0.670391 4_2:+69941823 Msa0618970:intron
GAGCTGTCATCAAATACACA+AGG 0.670564 4_2:+69942739 Msa0618970:CDS
TAGATTTCTATCCTCCAAGG+TGG 0.684299 4_2:-69941907 None:intergenic
TGTCCATTGGATGACTTCCA+TGG 0.689019 4_2:-69942072 None:intergenic
CCAAGATTAAGGAAGAACAG+GGG 0.732046 4_2:+69939353 Msa0618970:CDS
GTGCACGGACATAATCCTGG+CGG 0.759607 4_2:-69939710 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAAATGATTTAATTTT+TGG - chr4_2:69941275-69941294 None:intergenic 10.0%
!! TAAATTTATTTATTTGTGTT+TGG + chr4_2:69941328-69941347 Msa0618970:intron 10.0%
!! AAATTTATTTATTTGTGTTT+GGG + chr4_2:69941329-69941348 Msa0618970:intron 10.0%
!! AAAAAAAATAAAAAAGAGTA+AGG - chr4_2:69942218-69942237 None:intergenic 10.0%
!!! TTAGTTTATTTCTTTTTTAA+AGG + chr4_2:69942521-69942540 Msa0618970:intron 10.0%
!!! TAGTTTATTTCTTTTTTAAA+GGG + chr4_2:69942522-69942541 Msa0618970:intron 10.0%
!! AAGTTCATAAAATTACTAAT+AGG - chr4_2:69938621-69938640 None:intergenic 15.0%
!! AATTATACAACAACAATATA+TGG - chr4_2:69939007-69939026 None:intergenic 15.0%
!! AAAAACAATAAAAATACAGA+AGG - chr4_2:69939449-69939468 None:intergenic 15.0%
!!! TTCTGTATTTTTATTGTTTT+TGG + chr4_2:69939448-69939467 Msa0618970:intron 15.0%
!! GTTAATAATTAAAAACTTGT+TGG - chr4_2:69940443-69940462 None:intergenic 15.0%
!! ATAAGGAAGAAAAAAAAATA+AGG - chr4_2:69941576-69941595 None:intergenic 15.0%
!!! AGTTTATTTCTTTTTTAAAG+GGG + chr4_2:69942523-69942542 Msa0618970:intron 15.0%
!! AATATTACTTCAGAAATAAA+TGG - chr4_2:69942905-69942924 None:intergenic 15.0%
!!! TTTATTTCTGAAGTAATATT+TGG + chr4_2:69942905-69942924 Msa0618970:intron 15.0%
!! TTTCAATTGTAGATTTCTTA+TGG + chr4_2:69938513-69938532 Msa0618970:intron 20.0%
!! AATAAGTTGTTTATCCAAAA+AGG - chr4_2:69938722-69938741 None:intergenic 20.0%
!!! CTTAATTAAGTTTTATCTGT+AGG + chr4_2:69938790-69938809 Msa0618970:intron 20.0%
!!! AAAACATATGTCCTTTAAAA+TGG - chr4_2:69939260-69939279 None:intergenic 20.0%
!!! TTTCTAATAAGTTACTGATT+TGG + chr4_2:69939645-69939664 Msa0618970:intron 20.0%
!!! TTCTAATAAGTTACTGATTT+GGG + chr4_2:69939646-69939665 Msa0618970:intron 20.0%
!! CAAATATAAATAATTGCAGT+CGG - chr4_2:69940197-69940216 None:intergenic 20.0%
!! AACTTATATCATTAGTAACA+AGG - chr4_2:69940527-69940546 None:intergenic 20.0%
!!! AAGTTCAAACTCATTTTATA+TGG - chr4_2:69940908-69940927 None:intergenic 20.0%
!! AGTAATGTAAAGTAAAGAAT+TGG + chr4_2:69941380-69941399 Msa0618970:intron 20.0%
!! TACTATAAGATTCTGTTATA+CGG + chr4_2:69941760-69941779 Msa0618970:intron 20.0%
!! ATATTTGAACATGATTAGAA+AGG - chr4_2:69941981-69942000 None:intergenic 20.0%
!!! CTGTTAATAACTTTTTCTTA+TGG + chr4_2:69942416-69942435 Msa0618970:intron 20.0%
!!! AGTATGTAATTTTTGAAGAA+TGG + chr4_2:69942868-69942887 Msa0618970:intron 20.0%
!! TTAATCATAATGCTTATTTC+TGG + chr4_2:69942939-69942958 Msa0618970:intron 20.0%
!! TGCACAATAAAATTAAAAAG+TGG - chr4_2:69943321-69943340 None:intergenic 20.0%
!! TAGATCAAACATTATCATAA+AGG - chr4_2:69943373-69943392 None:intergenic 20.0%
!! CATTTGAGTATATGTAAATT+TGG + chr4_2:69943401-69943420 Msa0618970:three_prime_UTR 20.0%
!!! TTGGGTTTTATTTAATCGAT+TGG + chr4_2:69938447-69938466 Msa0618970:intron 25.0%
!!! GTTTTATTTAATCGATTGGT+AGG + chr4_2:69938451-69938470 Msa0618970:intron 25.0%
!! TAAATTTTGTGAGACTGTAT+GGG - chr4_2:69938946-69938965 None:intergenic 25.0%
!! ATAAATTTTGTGAGACTGTA+TGG - chr4_2:69938947-69938966 None:intergenic 25.0%
! GAGAAGATAATAAAACAGAA+TGG - chr4_2:69939225-69939244 None:intergenic 25.0%
!! CTTAGCATTATCCATTTTAA+AGG + chr4_2:69939246-69939265 Msa0618970:intron 25.0%
! ACACAATACAACATACAAAT+TGG - chr4_2:69939284-69939303 None:intergenic 25.0%
! TCTTCTACGTTAAATTGTTT+AGG + chr4_2:69939671-69939690 Msa0618970:intron 25.0%
! TTTATTACGAGCTAATGATT+AGG + chr4_2:69939868-69939887 Msa0618970:CDS 25.0%
!! ATGTCCTATACTGTTAATTT+TGG + chr4_2:69940133-69940152 Msa0618970:intron 25.0%
! GATTCCAAAATTAACAGTAT+AGG - chr4_2:69940140-69940159 None:intergenic 25.0%
!!! ATTTTGGAATCTGAAAGATA+AGG + chr4_2:69940149-69940168 Msa0618970:intron 25.0%
!! ATCCTTTTTATCTATATCTG+TGG + chr4_2:69940333-69940352 Msa0618970:intron 25.0%
!! TCCTTTTTATCTATATCTGT+GGG + chr4_2:69940334-69940353 Msa0618970:intron 25.0%
!!! TGTTTTAATTCTTAGCTTGA+TGG + chr4_2:69940463-69940482 Msa0618970:intron 25.0%
! GTTATCTTGTACTGTATTTA+TGG + chr4_2:69940599-69940618 Msa0618970:intron 25.0%
! AGATTTGATACAAAATCGAT+GGG - chr4_2:69940730-69940749 None:intergenic 25.0%
! AAGATTTGATACAAAATCGA+TGG - chr4_2:69940731-69940750 None:intergenic 25.0%
! TGGAATTGGAAAGAAAATAA+GGG - chr4_2:69940786-69940805 None:intergenic 25.0%
! TTGGAATTGGAAAGAAAATA+AGG - chr4_2:69940787-69940806 None:intergenic 25.0%
!!! AACTTTGGAAATTTTGGAAT+TGG - chr4_2:69940800-69940819 None:intergenic 25.0%
! TTTCAGAATAGTTAAGAACT+GGG - chr4_2:69940862-69940881 None:intergenic 25.0%
!!! TATTCTGAAACAAAGCATTA+TGG + chr4_2:69940872-69940891 Msa0618970:intron 25.0%
!! ATTTTTCACAACAGTATCAA+TGG - chr4_2:69940993-69941012 None:intergenic 25.0%
! TTCATTTGAATTATGTGTGA+AGG + chr4_2:69941143-69941162 Msa0618970:intron 25.0%
! TCATTTGAATTATGTGTGAA+GGG + chr4_2:69941144-69941163 Msa0618970:intron 25.0%
!!! TTTTTTTTTCTTCCTTATGC+TGG + chr4_2:69941578-69941597 Msa0618970:intron 25.0%
! TTCAAGATAATCATTGTTGT+GGG - chr4_2:69941632-69941651 None:intergenic 25.0%
! TTTCAAGATAATCATTGTTG+TGG - chr4_2:69941633-69941652 None:intergenic 25.0%
!!! AAATCCTACTGATTTTATTC+CGG + chr4_2:69941699-69941718 Msa0618970:CDS 25.0%
! GTATATGCAAGAACAATATT+TGG - chr4_2:69941815-69941834 None:intergenic 25.0%
! TTGTATCAAAATACTATGCA+AGG + chr4_2:69942321-69942340 Msa0618970:CDS 25.0%
! CAAAGAAAAAACTATATCCT+TGG + chr4_2:69942458-69942477 Msa0618970:intron 25.0%
! TTATGCAAGAGTAATTGATT+AGG - chr4_2:69942553-69942572 None:intergenic 25.0%
AACAACGATCTGATCATTTA+GGG - chr4_2:69938361-69938380 None:intergenic 30.0%
AAACAACGATCTGATCATTT+AGG - chr4_2:69938362-69938381 None:intergenic 30.0%
! AAATTGATGCGTTTTGTGTT+AGG + chr4_2:69938422-69938441 Msa0618970:intron 30.0%
! AATTGATGCGTTTTGTGTTA+GGG + chr4_2:69938423-69938442 Msa0618970:intron 30.0%
TTTAATCGATTGGTAGGTTT+AGG + chr4_2:69938457-69938476 Msa0618970:intron 30.0%
TTAATCGATTGGTAGGTTTA+GGG + chr4_2:69938458-69938477 Msa0618970:intron 30.0%
! TGTGTAGTTAGAAAGAGTTT+TGG + chr4_2:69938552-69938571 Msa0618970:intron 30.0%
! GTGTAGTTAGAAAGAGTTTT+GGG + chr4_2:69938553-69938572 Msa0618970:intron 30.0%
!!! TACGTTGTTTTAGACTTCAA+AGG + chr4_2:69938578-69938597 Msa0618970:intron 30.0%
!! GTTGTTTTCATATGCTATCT+TGG + chr4_2:69938855-69938874 Msa0618970:intron 30.0%
!! TGTCATAAGCTGTTTTCATA+AGG + chr4_2:69938917-69938936 Msa0618970:intron 30.0%
TTAAATAAGCCAATCCAAAC+AGG + chr4_2:69938981-69939000 Msa0618970:intron 30.0%
! GTGAGAATCGTGATATTTTA+CGG + chr4_2:69939037-69939056 Msa0618970:intron 30.0%
TCAATACGAGTTTCAATATC+CGG - chr4_2:69939141-69939160 None:intergenic 30.0%
AATTTCTTGCATCAAATCAG+CGG - chr4_2:69939392-69939411 None:intergenic 30.0%
TGATTTGATGCAAGAAATTG+CGG + chr4_2:69939393-69939412 Msa0618970:CDS 30.0%
ATGTAATGTGCAATCTTATC+AGG + chr4_2:69939509-69939528 Msa0618970:intron 30.0%
TTAGTGATGACAGAAATAGT+AGG + chr4_2:69939606-69939625 Msa0618970:intron 30.0%
ACCATATTATCACCTTCTTT+GGG - chr4_2:69939801-69939820 None:intergenic 30.0%
AAGAAATACTACAACGAAAC+AGG - chr4_2:69939911-69939930 None:intergenic 30.0%
!! TTCAGTTTCATTCACTTTTG+AGG + chr4_2:69940049-69940068 Msa0618970:intron 30.0%
!! TTCATTCACTTTTGAGGATA+TGG + chr4_2:69940055-69940074 Msa0618970:intron 30.0%
AATTTGAGTAAACACAAGCA+AGG - chr4_2:69940258-69940277 None:intergenic 30.0%
TCCCACAGATATAGATAAAA+AGG - chr4_2:69940338-69940357 None:intergenic 30.0%
!! CTATGATTTGTTTCTATGCT+TGG + chr4_2:69940358-69940377 Msa0618970:intron 30.0%
CCTAAGAAACTTAGATCATT+AGG - chr4_2:69940577-69940596 None:intergenic 30.0%
CCTAATGATCTAAGTTTCTT+AGG + chr4_2:69940574-69940593 Msa0618970:intron 30.0%
! TATTTATGGATTGCTAGAGT+TGG + chr4_2:69940613-69940632 Msa0618970:intron 30.0%
!! AGGGATAACTTTGGAAATTT+TGG - chr4_2:69940806-69940825 None:intergenic 30.0%
GTTTCAGAATAGTTAAGAAC+TGG - chr4_2:69940863-69940882 None:intergenic 30.0%
AGTATCAATGGTAAAAGACA+AGG - chr4_2:69940981-69941000 None:intergenic 30.0%
AGCAGCATAAATATAAACGA+CGG - chr4_2:69941107-69941126 None:intergenic 30.0%
CACACATAATTCAAATGAAC+AGG - chr4_2:69941142-69941161 None:intergenic 30.0%
!! AATTGTTGTTTGTCTACTGT+TGG + chr4_2:69941221-69941240 Msa0618970:intron 30.0%
!! CTACATATTTTTCTAGTACC+TGG + chr4_2:69941526-69941545 Msa0618970:intron 30.0%
AGTAAGAAATATCATGAACC+AGG - chr4_2:69941547-69941566 None:intergenic 30.0%
! ATCAGTAGGATTTTCTTTGA+TGG - chr4_2:69941692-69941711 None:intergenic 30.0%
TGAAAGATAGGATAACATAC+TGG - chr4_2:69941950-69941969 None:intergenic 30.0%
! TGTTTAGAATTCCTTGTCAT+TGG + chr4_2:69942003-69942022 Msa0618970:intron 30.0%
! TACAACAAGAATGTTCTGAA+AGG - chr4_2:69942306-69942325 None:intergenic 30.0%
!! TAACTTTTTCTTATGGTGTG+TGG + chr4_2:69942423-69942442 Msa0618970:intron 30.0%
!! AACTTTTTCTTATGGTGTGT+GGG + chr4_2:69942424-69942443 Msa0618970:intron 30.0%
CAATTACTCTTGCATAATTC+AGG + chr4_2:69942556-69942575 Msa0618970:intron 30.0%
CAATGATGTACTTAACTCAT+GGG + chr4_2:69942679-69942698 Msa0618970:CDS 30.0%
ACAGTGAGAAAATTTGAGAA+AGG - chr4_2:69942823-69942842 None:intergenic 30.0%
GTTCTTCATATTCTTTCGTT+TGG + chr4_2:69943271-69943290 Msa0618970:three_prime_UTR 30.0%
! GCTTTTCATTTCGTTTCTGT+AGG + chr4_2:69938194-69938213 Msa0618970:intron 35.0%
!! ATTTAGGGTTTTCCATGCTT+TGG - chr4_2:69938346-69938365 None:intergenic 35.0%
! TTTGGTTCGCTTGAAACTAT+CGG + chr4_2:69938482-69938501 Msa0618970:intron 35.0%
ACTGTTCAGTTCAGATACTA+TGG + chr4_2:69938695-69938714 Msa0618970:intron 35.0%
! TCAGATACTATGGTCCTTTT+TGG + chr4_2:69938705-69938724 Msa0618970:intron 35.0%
AATATATGGCCTGTTTGGAT+TGG - chr4_2:69938993-69939012 None:intergenic 35.0%
ACAACAATATATGGCCTGTT+TGG - chr4_2:69938998-69939017 None:intergenic 35.0%
AGCCTACTATATACTATCAC+AGG + chr4_2:69939068-69939087 Msa0618970:intron 35.0%
AGCCTGTGATAGTATATAGT+AGG - chr4_2:69939073-69939092 None:intergenic 35.0%
CAAGAAACTTGCCAAGATTA+AGG + chr4_2:69939342-69939361 Msa0618970:CDS 35.0%
TAATGTGCAATCTTATCAGG+TGG + chr4_2:69939512-69939531 Msa0618970:intron 35.0%
! TCTTATCAGGTGGAAACTTT+TGG + chr4_2:69939522-69939541 Msa0618970:intron 35.0%
!! TTCTTGAGAGTATTTGTGCA+CGG - chr4_2:69939728-69939747 None:intergenic 35.0%
ATTCGACATAGATGCATCTA+AGG + chr4_2:69939764-69939783 Msa0618970:CDS 35.0%
GAAAAGAAAAAGCCCAAAGA+AGG + chr4_2:69939786-69939805 Msa0618970:CDS 35.0%
GACCATATTATCACCTTCTT+TGG - chr4_2:69939802-69939821 None:intergenic 35.0%
! ACTTGTAGTTACAAGTACTG+TGG + chr4_2:69939940-69939959 Msa0618970:intron 35.0%
GTAGATACTCTAAATTGTCC+TGG + chr4_2:69940015-69940034 Msa0618970:intron 35.0%
!!! TGAGGATATGGTTTTGATGT+TGG + chr4_2:69940067-69940086 Msa0618970:intron 35.0%
GACATTAATGCATCACTGTT+AGG - chr4_2:69940118-69940137 None:intergenic 35.0%
!! TTGTTTCTATGCTTGGCATT+TGG + chr4_2:69940365-69940384 Msa0618970:intron 35.0%
GATGAAAAGTAGGGATGAAA+GGG - chr4_2:69940825-69940844 None:intergenic 35.0%
AGATGAAAAGTAGGGATGAA+AGG - chr4_2:69940826-69940845 None:intergenic 35.0%
GCAGACAAAGATGAAAAGTA+GGG - chr4_2:69940834-69940853 None:intergenic 35.0%
AGCAGACAAAGATGAAAAGT+AGG - chr4_2:69940835-69940854 None:intergenic 35.0%
AAGGAATCCAAATGTTAGGA+AGG - chr4_2:69940962-69940981 None:intergenic 35.0%
AGACAAGGAATCCAAATGTT+AGG - chr4_2:69940966-69940985 None:intergenic 35.0%
AAAACATGTTGCAAGAGTGA+AGG - chr4_2:69941250-69941269 None:intergenic 35.0%
AAGTAAAGAATTGGTCACAG+TGG + chr4_2:69941389-69941408 Msa0618970:intron 35.0%
ACCCAAGTTTAGAAAGCTAT+GGG - chr4_2:69941436-69941455 None:intergenic 35.0%
AACCCAAGTTTAGAAAGCTA+TGG - chr4_2:69941437-69941456 None:intergenic 35.0%
! GGTTTTCTGTCTGTGATTTT+AGG + chr4_2:69941599-69941618 Msa0618970:intron 35.0%
CATATATTGCCTTATAGCAG+CGG - chr4_2:69941660-69941679 None:intergenic 35.0%
! GTAGGATTTTCTTTGATGGA+CGG - chr4_2:69941688-69941707 None:intergenic 35.0%
AAAGAGAATAGAAAGCCTAC+CGG - chr4_2:69941721-69941740 None:intergenic 35.0%
AGATCCTGAGGAAAATATGT+TGG + chr4_2:69941835-69941854 Msa0618970:intron 35.0%
TTTAAAAGACTGGACTGCAT+CGG - chr4_2:69941885-69941904 None:intergenic 35.0%
CAAGGTGGAATTTAAAAGAC+TGG - chr4_2:69941895-69941914 None:intergenic 35.0%
! CAGTCTTTTAAATTCCACCT+TGG + chr4_2:69941893-69941912 Msa0618970:CDS 35.0%
! TCTTTTAAATTCCACCTTGG+AGG + chr4_2:69941896-69941915 Msa0618970:CDS 35.0%
AGATAGATTTCTATCCTCCA+AGG - chr4_2:69941913-69941932 None:intergenic 35.0%
AGGATAACATACTGGAAGTT+TGG - chr4_2:69941942-69941961 None:intergenic 35.0%
AAGGATGAGAGATGAAAGAT+AGG - chr4_2:69941962-69941981 None:intergenic 35.0%
!! ACTTTTTCTTATGGTGTGTG+GGG + chr4_2:69942425-69942444 Msa0618970:intron 35.0%
ATATCCTTGGAAAGTGAATG+TGG + chr4_2:69942471-69942490 Msa0618970:intron 35.0%
GCAATGATGTACTTAACTCA+TGG + chr4_2:69942678-69942697 Msa0618970:CDS 35.0%
TCAAATACACAAGGAAACCA+TGG + chr4_2:69942748-69942767 Msa0618970:CDS 35.0%
! AAACCTTCAAAGCTGCTTTA+TGG - chr4_2:69942775-69942794 None:intergenic 35.0%
! CTTTGAAGGTTTAAGAAGGT+AGG + chr4_2:69942783-69942802 Msa0618970:intron 35.0%
AAGAAGGTAGGTCCATATAT+CGG + chr4_2:69942795-69942814 Msa0618970:intron 35.0%
!! TGCTTATTTCTGGTCATTTC+AGG + chr4_2:69942949-69942968 Msa0618970:intron 35.0%
TCAGTCCATATCACATATTG+AGG - chr4_2:69942980-69942999 None:intergenic 35.0%
TTCAAATGAGAATCCCCATA+AGG - chr4_2:69943008-69943027 None:intergenic 35.0%
! TATTTTGCCATTATGCGTTC+AGG + chr4_2:69943074-69943093 Msa0618970:CDS 35.0%
AACTACATACAAGACCGTTT+AGG - chr4_2:69943229-69943248 None:intergenic 35.0%
! TGGTTGGTTGAGTGAAGTTT+GGG - chr4_2:69938077-69938096 None:intergenic 40.0%
AAGATTACCATGGTTGTGGT+TGG - chr4_2:69938093-69938112 None:intergenic 40.0%
ATCGAAGATTACCATGGTTG+TGG - chr4_2:69938097-69938116 None:intergenic 40.0%
GAATCGATCGAAGATTACCA+TGG - chr4_2:69938103-69938122 None:intergenic 40.0%
! CTTCGATCGATTCTCTTTCA+TGG + chr4_2:69938110-69938129 Msa0618970:intron 40.0%
AGCGTGAGATTAACAGTGAA+GGG - chr4_2:69938168-69938187 None:intergenic 40.0%
TAGCGTGAGATTAACAGTGA+AGG - chr4_2:69938169-69938188 None:intergenic 40.0%
TTCGTTTCTGTAGGCAAACA+TGG + chr4_2:69938203-69938222 Msa0618970:intron 40.0%
!!! TCTGTTTTGAAGCCAAAGCA+TGG + chr4_2:69938331-69938350 Msa0618970:CDS 40.0%
!! GTTGTTTTGTCTAAACGACG+CGG + chr4_2:69938375-69938394 Msa0618970:CDS 40.0%
! ATGCGTTTTGTGTTAGGGTT+TGG + chr4_2:69938428-69938447 Msa0618970:intron 40.0%
! TGCGTTTTGTGTTAGGGTTT+GGG + chr4_2:69938429-69938448 Msa0618970:intron 40.0%
!! GATTGGTAGGTTTAGGGTTT+TGG + chr4_2:69938464-69938483 Msa0618970:intron 40.0%
GCAATATATTGACGAGACAC+CGG + chr4_2:69939119-69939138 Msa0618970:CDS 40.0%
ACATTGAACAGTGTATCTGC+TGG + chr4_2:69939171-69939190 Msa0618970:CDS 40.0%
CATTGAACAGTGTATCTGCT+GGG + chr4_2:69939172-69939191 Msa0618970:CDS 40.0%
ATGTTGAGATTGAGAGAGCT+AGG + chr4_2:69939314-69939333 Msa0618970:CDS 40.0%
TGCCAAGATTAAGGAAGAAC+AGG + chr4_2:69939351-69939370 Msa0618970:CDS 40.0%
GCCAAGATTAAGGAAGAACA+GGG + chr4_2:69939352-69939371 Msa0618970:CDS 40.0%
CCAAGATTAAGGAAGAACAG+GGG + chr4_2:69939353-69939372 Msa0618970:CDS 40.0%
GCATCTATGTCGAATACTCT+TGG - chr4_2:69939759-69939778 None:intergenic 40.0%
GCCCAAAGAAGGTGATAATA+TGG + chr4_2:69939797-69939816 Msa0618970:CDS 40.0%
AGGTGATAATATGGTCGAAG+AGG + chr4_2:69939806-69939825 Msa0618970:CDS 40.0%
TGTTTCAACTCCAGTAGAGA+CGG - chr4_2:69939846-69939865 None:intergenic 40.0%
AACTGAAAACGCAGAAAACC+AGG - chr4_2:69940036-69940055 None:intergenic 40.0%
! TTATGGATTGCTAGAGTTGG+TGG + chr4_2:69940616-69940635 Msa0618970:intron 40.0%
AAAGTGCACAATTACAGTGC+AGG - chr4_2:69940694-69940713 None:intergenic 40.0%
! GCACTGTAATTGTGCACTTT+TGG + chr4_2:69940694-69940713 Msa0618970:intron 40.0%
AGGGATGAAAGGGATAACTT+TGG - chr4_2:69940815-69940834 None:intergenic 40.0%
! TTTAGAGCTGTCAAACTCTC+TGG + chr4_2:69940926-69940945 Msa0618970:intron 40.0%
TGGTCATCCTTCCTAACATT+TGG + chr4_2:69940952-69940971 Msa0618970:intron 40.0%
ACAAAACTCCTGTCATGACA+AGG + chr4_2:69941179-69941198 Msa0618970:intron 40.0%
TTCCTAAACCTTGTCATGAC+AGG - chr4_2:69941190-69941209 None:intergenic 40.0%
GTCATGACAAGGTTTAGGAA+AGG + chr4_2:69941190-69941209 Msa0618970:intron 40.0%
TCCCCATAGCTTTCTAAACT+TGG + chr4_2:69941431-69941450 Msa0618970:intron 40.0%
CCCAAGTTTAGAAAGCTATG+GGG - chr4_2:69941435-69941454 None:intergenic 40.0%
CCCCATAGCTTTCTAAACTT+GGG + chr4_2:69941432-69941451 Msa0618970:intron 40.0%
ACAGACAGAAAACCAGCATA+AGG - chr4_2:69941593-69941612 None:intergenic 40.0%
TGAAATTTGCCGCTGCTATA+AGG + chr4_2:69941648-69941667 Msa0618970:CDS 40.0%
CCTACCGGAATAAAATCAGT+AGG - chr4_2:69941706-69941725 None:intergenic 40.0%
!!! CCTACTGATTTTATTCCGGT+AGG + chr4_2:69941703-69941722 Msa0618970:intron 40.0%
TCTTGCATATACAGATCCTG+AGG + chr4_2:69941823-69941842 Msa0618970:intron 40.0%
! AGCACCAACATATTTTCCTC+AGG - chr4_2:69941842-69941861 None:intergenic 40.0%
! GAGGAAAATATGTTGGTGCT+TGG + chr4_2:69941842-69941861 Msa0618970:CDS 40.0%
TAGATTTCTATCCTCCAAGG+TGG - chr4_2:69941910-69941929 None:intergenic 40.0%
AACAGGTACAACCAATGACA+AGG - chr4_2:69942017-69942036 None:intergenic 40.0%
GAACGAGTTTGACAATGAGA+TGG + chr4_2:69942115-69942134 Msa0618970:CDS 40.0%
TTCACTCAAAAACCTTCCAG+AGG - chr4_2:69942141-69942160 None:intergenic 40.0%
TACTAGCATTACACACCTCT+AGG - chr4_2:69942385-69942404 None:intergenic 40.0%
GAGGTGTGTAATGCTAGTAA+TGG + chr4_2:69942386-69942405 Msa0618970:intron 40.0%
CTTGGAAAGTGAATGTGGTA+GGG + chr4_2:69942476-69942495 Msa0618970:intron 40.0%
TTGGAAAGTGAATGTGGTAG+GGG + chr4_2:69942477-69942496 Msa0618970:intron 40.0%
!! TGAGAAGCATCTGTCTGATA+TGG + chr4_2:69942583-69942602 Msa0618970:CDS 40.0%
GTCTGATATGGTTGTTACCA+AGG + chr4_2:69942595-69942614 Msa0618970:CDS 40.0%
TGCAAAGATTGACAGACCAA+TGG + chr4_2:69942625-69942644 Msa0618970:CDS 40.0%
GCAAAGATTGACAGACCAAT+GGG + chr4_2:69942626-69942645 Msa0618970:CDS 40.0%
TGGAAACAGACTATTCCCAT+TGG - chr4_2:69942644-69942663 None:intergenic 40.0%
AGTCTGTTTCCAAACAGCAA+AGG + chr4_2:69942652-69942671 Msa0618970:CDS 40.0%
!! CATTGCTATCCTTTGCTGTT+TGG - chr4_2:69942664-69942683 None:intergenic 40.0%
GAGCTGTCATCAAATACACA+AGG + chr4_2:69942739-69942758 Msa0618970:CDS 40.0%
!! GCAGCTTTGAAGGTTTAAGA+AGG + chr4_2:69942779-69942798 Msa0618970:intron 40.0%
TTGAGAAAGGAGCCGATATA+TGG - chr4_2:69942810-69942829 None:intergenic 40.0%
TGCCTCCTCAATATGTGATA+TGG + chr4_2:69942972-69942991 Msa0618970:CDS 40.0%
GTCCATATCACATATTGAGG+AGG - chr4_2:69942977-69942996 None:intergenic 40.0%
! TATGGACTGAAGTTGCCTTA+TGG + chr4_2:69942990-69943009 Msa0618970:CDS 40.0%
! ATGGACTGAAGTTGCCTTAT+GGG + chr4_2:69942991-69943010 Msa0618970:CDS 40.0%
TGAAATGTTGCTCACTGTGT+TGG + chr4_2:69943024-69943043 Msa0618970:CDS 40.0%
ATAATGGCCTGAACGCATAA+TGG - chr4_2:69943084-69943103 None:intergenic 40.0%
TATCTACCCTGAACGCATAA+TGG - chr4_2:69943100-69943119 None:intergenic 40.0%
TTACCGGACAAGATCCTAAA+CGG + chr4_2:69943212-69943231 Msa0618970:three_prime_UTR 40.0%
! ACGGTCTTGTATGTAGTTAG+TGG + chr4_2:69943231-69943250 Msa0618970:three_prime_UTR 40.0%
TTTATTGTGCAAGTGCAGCT+TGG + chr4_2:69943330-69943349 Msa0618970:three_prime_UTR 40.0%
! GTGGTTGGTTGAGTGAAGTT+TGG - chr4_2:69938078-69938097 None:intergenic 45.0%
ATCACAGGCTGTAACAGCTA+TGG + chr4_2:69939083-69939102 Msa0618970:intron 45.0%
TGTAACAGCTATGGTACAGC+AGG + chr4_2:69939092-69939111 Msa0618970:CDS 45.0%
TGAGATTGAGAGAGCTAGGT+TGG + chr4_2:69939318-69939337 Msa0618970:CDS 45.0%
CCCCTGTTCTTCCTTAATCT+TGG - chr4_2:69939356-69939375 None:intergenic 45.0%
!! GGTGGAAACTTTTGGTGCAA+TGG + chr4_2:69939530-69939549 Msa0618970:intron 45.0%
TTTGTGCACGGACATAATCC+TGG - chr4_2:69939716-69939735 None:intergenic 45.0%
AGTAGAGACGGAATATCTGC+AGG - chr4_2:69939834-69939853 None:intergenic 45.0%
TGCAGATATTCCGTCTCTAC+TGG + chr4_2:69939833-69939852 Msa0618970:CDS 45.0%
TGGTTCCAAAGACGAAAGTG+CGG + chr4_2:69940385-69940404 Msa0618970:intron 45.0%
! CGGATTGGAGTACATGTTTG+TGG + chr4_2:69940405-69940424 Msa0618970:intron 45.0%
GCTGTCAAACTCTCTGGTTA+TGG + chr4_2:69940932-69940951 Msa0618970:intron 45.0%
ATTATGTGTGAAGGGCAACC+AGG + chr4_2:69941152-69941171 Msa0618970:intron 45.0%
CTCCTGTCATGACAAGGTTT+AGG + chr4_2:69941185-69941204 Msa0618970:intron 45.0%
TGGTCACAGTGGAGTATATG+TGG + chr4_2:69941400-69941419 Msa0618970:intron 45.0%
CGATTTCACAGTCAGTGAAG+TGG - chr4_2:69941472-69941491 None:intergenic 45.0%
TGTACCTGTTACACGTGTCT+AGG + chr4_2:69942027-69942046 Msa0618970:intron 45.0%
!!! TAGGCTACTTTTGAAGCAGC+TGG + chr4_2:69942046-69942065 Msa0618970:intron 45.0%
TCACCATGGAAGTCATCCAA+TGG + chr4_2:69942069-69942088 Msa0618970:CDS 45.0%
TGTCCATTGGATGACTTCCA+TGG - chr4_2:69942075-69942094 None:intergenic 45.0%
TCATCCAATGGACAGCTCTT+TGG + chr4_2:69942081-69942100 Msa0618970:CDS 45.0%
CATCCAATGGACAGCTCTTT+GGG + chr4_2:69942082-69942101 Msa0618970:CDS 45.0%
TTTGACAATGAGATGGCCTC+TGG + chr4_2:69942122-69942141 Msa0618970:CDS 45.0%
CCTACCACATTCACTTTCCA+AGG - chr4_2:69942478-69942497 None:intergenic 45.0%
CCTTGGAAAGTGAATGTGGT+AGG + chr4_2:69942475-69942494 Msa0618970:intron 45.0%
TGAATGTGGTAGGGGAATTG+TGG + chr4_2:69942485-69942504 Msa0618970:intron 45.0%
TATGGTTGTTACCAAGGCTC+TGG + chr4_2:69942601-69942620 Msa0618970:CDS 45.0%
AATCTTTGCAACCAGAGCCT+TGG - chr4_2:69942615-69942634 None:intergenic 45.0%
TAACTCATGGGCAGCAAACT+TGG + chr4_2:69942691-69942710 Msa0618970:CDS 45.0%
GGAGAAACTGCTTGATCTTG+TGG + chr4_2:69942712-69942731 Msa0618970:CDS 45.0%
! CAAAGCTGCTTTATGGACCA+TGG - chr4_2:69942768-69942787 None:intergenic 45.0%
! GGTCCATAAAGCAGCTTTGA+AGG + chr4_2:69942769-69942788 Msa0618970:CDS 45.0%
TGGACTGAAGTTGCCTTATG+GGG + chr4_2:69942992-69943011 Msa0618970:CDS 45.0%
TTCAGGCCATTATGCGTTCA+GGG + chr4_2:69943091-69943110 Msa0618970:CDS 45.0%
!! ATACCTTACCACCGACTTAC+CGG + chr4_2:69943196-69943215 Msa0618970:three_prime_UTR 45.0%
TAGGATCTTGTCCGGTAAGT+CGG - chr4_2:69943210-69943229 None:intergenic 45.0%
! AGACCGTTTAGGATCTTGTC+CGG - chr4_2:69943218-69943237 None:intergenic 45.0%
CACTCAACCAACCACAACCA+TGG + chr4_2:69938083-69938102 Msa0618970:exon 50.0%
GAGAAACAAATGCGTCTCGC+CGG + chr4_2:69938264-69938283 Msa0618970:CDS 50.0%
!! TCTAGTGCCGACTATTTCGC+CGG - chr4_2:69938286-69938305 None:intergenic 50.0%
GAACAGTGTATCTGCTGGGA+AGG + chr4_2:69939176-69939195 Msa0618970:CDS 50.0%
AGAACAGGGGCTTATAGCTG+AGG + chr4_2:69939366-69939385 Msa0618970:CDS 50.0%
CCAATCCGCACTTTCGTCTT+TGG - chr4_2:69940393-69940412 None:intergenic 50.0%
! CCAAAGACGAAAGTGCGGAT+TGG + chr4_2:69940390-69940409 Msa0618970:intron 50.0%
GTAGCCTAGACACGTGTAAC+AGG - chr4_2:69942034-69942053 None:intergenic 50.0%
! TTTGAAGCAGCTGGTCACCA+TGG + chr4_2:69942055-69942074 Msa0618970:CDS 50.0%
TCTCCCAAAGAGCTGTCCAT+TGG - chr4_2:69942088-69942107 None:intergenic 50.0%
ACAATGAGATGGCCTCTGGA+AGG + chr4_2:69942126-69942145 Msa0618970:CDS 50.0%
! GCTTTTGTGTCTCAGCCTAG+AGG + chr4_2:69942367-69942386 Msa0618970:CDS 50.0%
! TGTTGCTCACTGTGTTGGTG+AGG + chr4_2:69943029-69943048 Msa0618970:CDS 50.0%
GTTCAGGCCATTATGCGTTC+AGG + chr4_2:69943090-69943109 Msa0618970:CDS 50.0%
GGACATAATCCTGGCGGTCT+AGG - chr4_2:69939707-69939726 None:intergenic 55.0%
GTGCACGGACATAATCCTGG+CGG - chr4_2:69939713-69939732 None:intergenic 55.0%
GCAGTCGGACAGACAGTCAT+TGG - chr4_2:69940182-69940201 None:intergenic 55.0%
!! GACAGGAGTTTTGTAGCGCC+TGG - chr4_2:69941173-69941192 None:intergenic 55.0%
! CTGGACTGCATCGGTGAATG+TGG - chr4_2:69941876-69941895 None:intergenic 55.0%
TGTCCGGTAAGTCGGTGGTA+AGG - chr4_2:69943202-69943221 None:intergenic 55.0%
GATCTTGTCCGGTAAGTCGG+TGG - chr4_2:69943207-69943226 None:intergenic 55.0%
CGTCTCGCCGGCGAAATAGT+CGG + chr4_2:69938276-69938295 Msa0618970:CDS 60.0%
TCGATTGTGCCTAGACCGCC+AGG + chr4_2:69939695-69939714 Msa0618970:CDS 60.0%
ACGACGCGGTCAGCTCAAGC+AGG + chr4_2:69938389-69938408 Msa0618970:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 69938031 69943437 69938031 ID=Msa0618970;Name=Msa0618970
chr4_2 mRNA 69938031 69943437 69938031 ID=Msa0618970-mRNA-1;Parent=Msa0618970;Name=Msa0618970-mRNA-1;_AED=0.09;_eAED=0.09;_QI=71|0.90|0.91|1|1|1|12|269|505
chr4_2 exon 69938031 69938104 69938031 ID=Msa0618970-mRNA-1:exon:20277;Parent=Msa0618970-mRNA-1
chr4_2 exon 69938216 69938410 69938216 ID=Msa0618970-mRNA-1:exon:20278;Parent=Msa0618970-mRNA-1
chr4_2 exon 69939090 69939197 69939090 ID=Msa0618970-mRNA-1:exon:20279;Parent=Msa0618970-mRNA-1
chr4_2 exon 69939310 69939414 69939310 ID=Msa0618970-mRNA-1:exon:20280;Parent=Msa0618970-mRNA-1
chr4_2 exon 69939531 69939587 69939531 ID=Msa0618970-mRNA-1:exon:20281;Parent=Msa0618970-mRNA-1
chr4_2 exon 69939693 69939889 69939693 ID=Msa0618970-mRNA-1:exon:20282;Parent=Msa0618970-mRNA-1
chr4_2 exon 69941621 69941720 69941621 ID=Msa0618970-mRNA-1:exon:20283;Parent=Msa0618970-mRNA-1
chr4_2 exon 69941837 69941949 69941837 ID=Msa0618970-mRNA-1:exon:20284;Parent=Msa0618970-mRNA-1
chr4_2 exon 69942049 69942199 69942049 ID=Msa0618970-mRNA-1:exon:20285;Parent=Msa0618970-mRNA-1
chr4_2 exon 69942311 69942388 69942311 ID=Msa0618970-mRNA-1:exon:20286;Parent=Msa0618970-mRNA-1
chr4_2 exon 69942578 69942790 69942578 ID=Msa0618970-mRNA-1:exon:20287;Parent=Msa0618970-mRNA-1
chr4_2 exon 69942971 69943437 69942971 ID=Msa0618970-mRNA-1:exon:20288;Parent=Msa0618970-mRNA-1
chr4_2 five_prime_UTR 69938031 69938101 69938031 ID=Msa0618970-mRNA-1:five_prime_utr;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69938102 69938104 69938102 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69938216 69938410 69938216 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69939090 69939197 69939090 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69939310 69939414 69939310 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69939531 69939587 69939531 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69939693 69939889 69939693 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69941621 69941720 69941621 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69941837 69941949 69941837 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69942049 69942199 69942049 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69942311 69942388 69942311 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69942578 69942790 69942578 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 CDS 69942971 69943168 69942971 ID=Msa0618970-mRNA-1:cds;Parent=Msa0618970-mRNA-1
chr4_2 three_prime_UTR 69943169 69943437 69943169 ID=Msa0618970-mRNA-1:three_prime_utr;Parent=Msa0618970-mRNA-1
Gene Sequence

>Msa0618970

ATGGCAAACATGGAGAATCTTGATGCGAAGATAGAACAATTGCTCAACGTCGAGAAACAAATGCGTCTCGCCGGCGAAATAGTCGGCACTAGAAAAGCTGCAATCGACATCTTGCAACTCTGTTTTGAAGCCAAAGCATGGAAAACCCTAAATGATCAGATCGTTGTTTTGTCTAAACGACGCGGTCAGCTCAAGCAGGCTGTAACAGCTATGGTACAGCAGGCTATGCAATATATTGACGAGACACCGGATATTGAAACTCGTATTGAACTTATCAAAACATTGAACAGTGTATCTGCTGGGAAGATATATGTTGAGATTGAGAGAGCTAGGTTGGTCAAGAAACTTGCCAAGATTAAGGAAGAACAGGGGCTTATAGCTGAGGCCGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCAATGGCAAAAACTGAGAAAATTGCATTCATTCTCGAACAAGTTCGATTGTGCCTAGACCGCCAGGATTATGTCCGTGCACAAATACTCTCAAGAAAGATAAGTCCAAGAGTATTCGACATAGATGCATCTAAGGAAAAGAAAAAGCCCAAAGAAGGTGATAATATGGTCGAAGAGGCTCCTGCAGATATTCCGTCTCTACTGGAGTTGAAACAGATTTATTACGAGCTAATGATTAGGTATTATTCCCACAACAATGATTATCTTGAAATTTGCCGCTGCTATAAGGCAATATATGAGATTCCGTCCATCAAAGAAAATCCTACTGATTTTATTCCGATCCTGAGGAAAATATGTTGGTGCTTGGTTCTAGCACCACATTCACCGATGCAGTCCAGTCTTTTAAATTCCACCTTGGAGGATAGAAATCTATCTGAGATTCCAAACTTCCAGCTACTTTTGAAGCAGCTGGTCACCATGGAAGTCATCCAATGGACAGCTCTTTGGGAGACATATAAGAACGAGTTTGACAATGAGATGGCCTCTGGAAGGTTTTTGAGTGAAAAAGCAGCTGAAGATCTGAAACAGAGAATTATTGAACATAACATTCTTGTTGTATCAAAATACTATGCAAGGATTACTTTGAAGAGACTTGCACAGCTTTTGTGTCTCAGCCTAGAGGAAGCTGAGAAGCATCTGTCTGATATGGTTGTTACCAAGGCTCTGGTTGCAAAGATTGACAGACCAATGGGAATAGTCTGTTTCCAAACAGCAAAGGATAGCAATGATGTACTTAACTCATGGGCAGCAAACTTGGAGAAACTGCTTGATCTTGTGGAGAAGAGCTGTCATCAAATACACAAGGAAACCATGGTCCATAAAGCAGCTTTGAAGGTGCCTCCTCAATATGTGATATGGACTGAAGTTGCCTTATGGGGATTCTCATTTGAAATGTTGCTCACTGTGTTGGTGAGGAATAACAATTGTCTCAAATTTATATTTTGCCATTATGCGTTCAGGCCATTATGCGTTCAGGGTAGATATGATATGATTCTTAGTACTGAAAGTAGCTTTGTTGTATACTACTTTTAA

Protein sequence

>Msa0618970

MANMENLDAKIEQLLNVEKQMRLAGEIVGTRKAAIDILQLCFEAKAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDIETRIELIKTLNSVSAGKIYVEIERARLVKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDIDASKEKKKPKEGDNMVEEAPADIPSLLELKQIYYELMIRYYSHNNDYLEICRCYKAIYEIPSIKENPTDFIPILRKICWCLVLAPHSPMQSSLLNSTLEDRNLSEIPNFQLLLKQLVTMEVIQWTALWETYKNEFDNEMASGRFLSEKAAEDLKQRIIEHNILVVSKYYARITLKRLAQLLCLSLEEAEKHLSDMVVTKALVAKIDRPMGIVCFQTAKDSNDVLNSWAANLEKLLDLVEKSCHQIHKETMVHKAALKVPPQYVIWTEVALWGFSFEMLLTVLVRNNNCLKFIFCHYAFRPLCVQGRYDMILSTESSFVVYYF*