AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120330 MtrunA17_Chr1g0178661 96.281 484 18 0 1 484 1 484 0.0 947
Msa0120330 MtrunA17_Chr7g0266231 77.374 495 91 10 1 483 8 493 0.0 671
Msa0120330 MtrunA17_Chr3g0100581 57.612 335 134 2 96 430 35 361 8.04e-111 334
Msa0120330 MtrunA17_Chr5g0445051 57.966 295 121 2 137 430 74 366 4.37e-108 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120330 AT2G36250.2 71.400 493 117 9 1 484 1 478 0.0 631
Msa0120330 AT2G36250.3 71.400 493 117 9 1 484 1 478 0.0 631
Msa0120330 AT2G36250.1 71.400 493 117 9 1 484 1 478 0.0 631
Msa0120330 AT3G52750.3 78.271 428 79 3 57 484 60 473 0.0 630
Msa0120330 AT3G52750.2 78.271 428 79 3 57 484 60 473 0.0 630
Msa0120330 AT3G52750.1 78.271 428 79 3 57 484 60 473 0.0 630
Msa0120330 AT2G36250.4 80.645 403 70 5 84 484 1 397 0.0 601
Msa0120330 AT3G52750.4 77.816 293 54 2 57 349 60 341 7.21e-144 416
Msa0120330 AT5G55280.1 56.395 344 146 2 89 430 38 379 3.35e-108 328

Find 135 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTCCTTCAAATGAAAA+AGG 0.157995 1_3:+45020938 None:intergenic
TCGATTGAAGAGGCGGTTTA+TGG 0.213081 1_3:-45022456 Msa0120330:CDS
CAGTCTCCTTTACTGGATAT+TGG 0.228609 1_3:-45020305 Msa0120330:CDS
CAGAGCTTGTTATAATTCTT+TGG 0.241011 1_3:-45017845 Msa0120330:three_prime_UTR
TGCTATTCAGTCTCCTTTAC+TGG 0.257008 1_3:-45020312 Msa0120330:CDS
AGATTGAATGCTTCCGTTAC+AGG 0.277515 1_3:+45020809 None:intergenic
CATAAATTTGAAGTTCAAAA+TGG 0.279116 1_3:-45023075 Msa0120330:exon
CGATGCACGGAGTTGAGTTT+TGG 0.280389 1_3:-45022623 Msa0120330:CDS
CAGGCGAAGATTAAAGTTAT+TGG 0.295298 1_3:-45022693 Msa0120330:CDS
TGCTGATATTCGAGCTATAA+TGG 0.295573 1_3:-45020606 Msa0120330:CDS
GAGAAAGGGCAGTTCTAGTT+TGG 0.303814 1_3:-45022769 Msa0120330:CDS
CCTTTCTTCTTTAAGAAATC+AGG 0.304694 1_3:+45018146 None:intergenic
TTAGCTTGTATTCTTGTATA+GGG 0.306127 1_3:-45017883 Msa0120330:three_prime_UTR
ATTAGCTTGTATTCTTGTAT+AGG 0.307271 1_3:-45017884 Msa0120330:three_prime_UTR
GTAAATGAAGAAAGCGTAAT+TGG 0.318418 1_3:+45023359 None:intergenic
GTAATAGATCCTTCACTTAC+TGG 0.318596 1_3:-45019189 Msa0120330:CDS
ATGATATGAACTACCATTAC+TGG 0.320091 1_3:+45022869 None:intergenic
TTAGGTAGTGAGAGAAAGTT+AGG 0.327999 1_3:-45022921 Msa0120330:CDS
AAGAGTTGTTCATACAGTTT+TGG 0.336510 1_3:-45017974 Msa0120330:three_prime_UTR
GCTGGAATGGGTGGTGGAAC+CGG 0.337874 1_3:-45021034 Msa0120330:CDS
GCAGTTAATAGCTTGTCATT+TGG 0.353188 1_3:+45020848 None:intergenic
CCCGAGGTTTCGATGCTTAG+AGG 0.362587 1_3:-45022819 Msa0120330:CDS
GCAGCATTCATTCCCATCTC+AGG 0.363659 1_3:+45022495 None:intergenic
TTGGAACTTACGCGAGGTCT+TGG 0.365517 1_3:-45022531 Msa0120330:CDS
AATTCCTTCTTGTGCTTGAA+TGG 0.366217 1_3:+45020910 None:intergenic
AGTTGTGGGAATCATTTGAT+TGG 0.376656 1_3:+45023404 None:intergenic
AAGGAAAATGTTCATAAAAC+AGG 0.377030 1_3:+45017822 None:intergenic
CCCTTCTGAATTTATAGCAT+TGG 0.386538 1_3:+45023022 None:intergenic
AATGATTCCCACAACTTCTC+AGG 0.396756 1_3:-45023397 Msa0120330:five_prime_UTR
TTCATGAAATTAACTCTCAT+AGG 0.408018 1_3:+45022969 None:intergenic
GTTATTGGTGTGGGAGGTGG+TGG 0.408049 1_3:-45022678 Msa0120330:CDS
AGCATAACATTAATTGCAAC+CGG 0.408343 1_3:-45018376 Msa0120330:CDS
CAATGCTGGTTCTTCACTGA+TGG 0.410946 1_3:-45020582 Msa0120330:CDS
GAACCGTCTGCAGATTGGTT+TGG 0.412737 1_3:-45022550 Msa0120330:CDS
GGGGTGTTTAATGTTGTTAG+AGG 0.414011 1_3:-45023002 Msa0120330:CDS
GGCGGTTTATGGAGCTGATA+TGG 0.416466 1_3:-45022445 Msa0120330:CDS
TGCTGATGATATTCTTCGAC+AGG 0.422970 1_3:-45020786 Msa0120330:CDS
TTCCTCTTGACGCTTGAATC+CGG 0.423864 1_3:+45018357 None:intergenic
ATGGGTGGTGGAACCGGCAC+AGG 0.425036 1_3:-45021028 Msa0120330:CDS
AAACTAGAACTGCCCTTTCT+CGG 0.425268 1_3:+45022771 None:intergenic
AAAGAAATGCACAGAGCATT+GGG 0.426774 1_3:+45018088 None:intergenic
ACTTACTGAGTGCAGATCCC+TGG 0.436250 1_3:-45020647 Msa0120330:intron
AGAAAGGGCAGTTCTAGTTT+GGG 0.436746 1_3:-45022768 Msa0120330:CDS
CCTGATTTCTTAAAGAAGAA+AGG 0.436829 1_3:-45018146 Msa0120330:CDS
GAGTGATCTGACTTTGTTTG+AGG 0.444135 1_3:-45020240 Msa0120330:intron
AAAGTTATTGGTGTGGGAGG+TGG 0.445941 1_3:-45022681 Msa0120330:CDS
CCAATCTGCAGACGGTTCTC+AGG 0.448678 1_3:+45022555 None:intergenic
GTTATTAATAACATTGGTCT+AGG 0.449498 1_3:-45018038 Msa0120330:three_prime_UTR
ATTCTTCGACAGGGCGTTCG+TGG 0.450765 1_3:-45020776 Msa0120330:CDS
GGAATTGTGTGGAACATAAC+TGG 0.451299 1_3:-45020266 Msa0120330:CDS
GGTGGTGCTCCGATTATTGC+TGG 0.461113 1_3:-45021007 Msa0120330:CDS
TTTGCAACACCAGCAATAAT+CGG 0.461666 1_3:+45020998 None:intergenic
AAGGACGCTCACGCTATCCT+AGG 0.463769 1_3:-45018127 Msa0120330:CDS
ATTGGTATAGAGAGGGCTAC+TGG 0.466303 1_3:-45020287 Msa0120330:CDS
TTTGATTGGAAAACTACAAC+GGG 0.468569 1_3:+45023418 None:intergenic
CACGGTGAATGTTCCGAGAA+AGG 0.470521 1_3:-45022784 Msa0120330:CDS
CCTTCCTCGTTCTCTGATGA+TGG 0.472648 1_3:-45018185 Msa0120330:CDS
CAATGGGTATACTGACTGTT+GGG 0.476043 1_3:-45020973 Msa0120330:CDS
AATGCTGGTTCTTCACTGAT+GGG 0.476321 1_3:-45020581 Msa0120330:CDS
CAAAGAAATGCACAGAGCAT+TGG 0.476789 1_3:+45018087 None:intergenic
GGATTTATCCGAGAGCTTAG+AGG 0.477876 1_3:-45022742 Msa0120330:CDS
CCTGAGAACCGTCTGCAGAT+TGG 0.481006 1_3:-45022555 Msa0120330:CDS
AAATCAACATTTACCATCCC+AGG 0.484005 1_3:+45020629 None:intergenic
TGCTGGTGTTGCAAAGTCAA+TGG 0.486003 1_3:-45020990 Msa0120330:CDS
GATTGAATGCTTCCGTTACA+GGG 0.488232 1_3:+45020810 None:intergenic
ATGGGGATAGGAACTGCAAC+TGG 0.490129 1_3:-45020563 Msa0120330:intron
ACGGTGAATGTTCCGAGAAA+GGG 0.497100 1_3:-45022783 Msa0120330:CDS
CTTACTGAGTGCAGATCCCT+GGG 0.499177 1_3:-45020646 Msa0120330:intron
AAGAGAAACCTGAGAAGTTG+TGG 0.506292 1_3:+45023389 None:intergenic
TTGCAGGCTGGAATGGGTGG+TGG 0.508649 1_3:-45021040 Msa0120330:intron
TCCAATGCTATAAATTCAGA+AGG 0.514350 1_3:-45023023 Msa0120330:CDS
ACCTCTAAGCATCGAAACCT+CGG 0.514410 1_3:+45022818 None:intergenic
AAGATTAAAGTTATTGGTGT+GGG 0.518785 1_3:-45022687 Msa0120330:CDS
CTTATTCAAATATGTTAACA+AGG 0.520626 1_3:+45017910 None:intergenic
AATCGGAGCACCACCTGTGC+CGG 0.521073 1_3:+45021015 None:intergenic
TCAGGGGTTATTAATAACAT+TGG 0.523440 1_3:-45018044 Msa0120330:three_prime_UTR
GGTGGTGGAACCGGCACAGG+TGG 0.528595 1_3:-45021025 Msa0120330:CDS
TCTATACCAATATCCAGTAA+AGG 0.530736 1_3:+45020299 None:intergenic
GGGCAGTTCTAGTTTGGGTG+AGG 0.532728 1_3:-45022763 Msa0120330:CDS
CCTCTAAGCATCGAAACCTC+GGG 0.534486 1_3:+45022819 None:intergenic
TCAATGGGTATACTGACTGT+TGG 0.536448 1_3:-45020974 Msa0120330:CDS
AGAGAAACCTGAGAAGTTGT+GGG 0.539209 1_3:+45023390 None:intergenic
TGTGTGTTCAAGGGAAAACA+AGG 0.539311 1_3:-45020355 Msa0120330:intron
CAGCATTCATTCCCATCTCA+GGG 0.540119 1_3:+45022496 None:intergenic
CGAGCTATAATGGCCAATGC+TGG 0.546952 1_3:-45020596 Msa0120330:CDS
TAGTGAGAGTAATTACAGTC+AGG 0.547542 1_3:-45022712 Msa0120330:CDS
TACTGGATATTGGTATAGAG+AGG 0.547814 1_3:-45020295 Msa0120330:CDS
ATTAAAGTTATTGGTGTGGG+AGG 0.547943 1_3:-45022684 Msa0120330:CDS
CAGAGAGTCGATTGAAGAGG+CGG 0.548139 1_3:-45022463 Msa0120330:CDS
GGTTCTTCACTGATGGGGAT+AGG 0.549568 1_3:-45020575 Msa0120330:CDS
CATCAGTGAAGAACCAGCAT+TGG 0.554126 1_3:+45020583 None:intergenic
GATTTGAATTATACCTGTAG+TGG 0.554427 1_3:+45018322 None:intergenic
GCAGAAGAGTATTAAACCCT+AGG 0.555930 1_3:+45018110 None:intergenic
ACAGACTAGTCAGCTCACTC+AGG 0.564624 1_3:-45018237 Msa0120330:intron
GCTGGTGTTGCAAAGTCAAT+GGG 0.565632 1_3:-45020989 Msa0120330:CDS
AGATATATCCTCTAAGCTCT+CGG 0.568987 1_3:+45022734 None:intergenic
TTCTCAATCTACCCCTGTAA+CGG 0.573127 1_3:-45020822 Msa0120330:CDS
CCAATGCTATAAATTCAGAA+GGG 0.575876 1_3:-45023022 Msa0120330:CDS
ACAATGAGCAAAGGTGGTCG+TGG 0.581416 1_3:-45023458 Msa0120330:five_prime_UTR
AGATCCATTCAAGCACAAGA+AGG 0.582161 1_3:-45020914 Msa0120330:CDS
CTTACGCGAGGTCTTGGAGC+TGG 0.582616 1_3:-45022525 Msa0120330:CDS
ACATGAAGAGAAGCCACTAC+AGG 0.584372 1_3:-45018335 Msa0120330:intron
ATTTGATTGGAAAACTACAA+CGG 0.588256 1_3:+45023417 None:intergenic
AGGACGCTCACGCTATCCTA+GGG 0.592290 1_3:-45018126 Msa0120330:CDS
ACTGGATATTGGTATAGAGA+GGG 0.593490 1_3:-45020294 Msa0120330:CDS
AAATGAACAATGAGCAAAGG+TGG 0.595670 1_3:-45023464 Msa0120330:five_prime_UTR
GAAGATTAAAGTTATTGGTG+TGG 0.599068 1_3:-45022688 Msa0120330:CDS
AGCTGGTGGTAACCCTGAGA+TGG 0.605521 1_3:-45022508 Msa0120330:CDS
AAGCAGAGAGTCGATTGAAG+AGG 0.606090 1_3:-45022466 Msa0120330:CDS
ACGCGAGGTCTTGGAGCTGG+TGG 0.612340 1_3:-45022522 Msa0120330:CDS
TAGAGGTGAGGCGAGTAGCA+CGG 0.614398 1_3:-45022802 Msa0120330:CDS
CTGAGTGCAGATCCCTGGGA+TGG 0.627247 1_3:-45020642 Msa0120330:intron
ATGCTGGTTCTTCACTGATG+GGG 0.629953 1_3:-45020580 Msa0120330:CDS
CCATCATCAGAGAACGAGGA+AGG 0.634743 1_3:+45018185 None:intergenic
GGTTTCGATGCTTAGAGGTG+AGG 0.639410 1_3:-45022814 Msa0120330:CDS
GCTGGTGGTAACCCTGAGAT+GGG 0.642398 1_3:-45022507 Msa0120330:CDS
AACCGGATTCAAGCGTCAAG+AGG 0.644965 1_3:-45018359 Msa0120330:CDS
CAATGCTATAAATTCAGAAG+GGG 0.649034 1_3:-45023021 Msa0120330:CDS
ATGATAGAGAGTTCGATGCA+CGG 0.654697 1_3:-45022636 Msa0120330:CDS
AATCAACATTTACCATCCCA+GGG 0.657201 1_3:+45020630 None:intergenic
CTTACATGACCAGTAAGTGA+AGG 0.661515 1_3:+45019180 None:intergenic
ATTGAATGCTTCCGTTACAG+GGG 0.665540 1_3:+45020811 None:intergenic
CAGACTAGTCAGCTCACTCA+GGG 0.667175 1_3:-45018236 Msa0120330:CDS
GCTGATGATATTCTTCGACA+GGG 0.667848 1_3:-45020785 Msa0120330:CDS
GTGTGTTCAAGGGAAAACAA+GGG 0.669673 1_3:-45020354 Msa0120330:intron
AGAGGGCTACTGGAATTGTG+TGG 0.670337 1_3:-45020277 Msa0120330:CDS
GGGAGGTGGTGGATCTAACG+CGG 0.675707 1_3:-45022667 Msa0120330:CDS
AGAAGTTATCTACGACCTCG+TGG 0.681487 1_3:-45019241 Msa0120330:CDS
GTTCCAAACCAATCTGCAGA+CGG 0.682388 1_3:+45022547 None:intergenic
TTGTGTGGAACATAACTGGT+GGG 0.692106 1_3:-45020262 Msa0120330:CDS
ACTACCATCATCAGAGAACG+AGG 0.692979 1_3:+45018181 None:intergenic
AGACGGTTCTCAGGAAACAC+AGG 0.693113 1_3:+45022564 None:intergenic
ATTGGTTTGGAACTTACGCG+AGG 0.698954 1_3:-45022537 Msa0120330:CDS
AATTAGCACTAGGGTCCACG+AGG 0.745457 1_3:+45019226 None:intergenic
ATTGTGTGGAACATAACTGG+TGG 0.767709 1_3:-45020263 Msa0120330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTTGATAGAAAAAT+TGG - chr1_3:45018315-45018334 Msa0120330:intron 10.0%
!!! ATTGAATTATATTTTACATT+AGG - chr1_3:45018891-45018910 Msa0120330:intron 10.0%
!! TACAAAATTATAAAAGAAAA+TGG - chr1_3:45019927-45019946 Msa0120330:intron 10.0%
!! CTAATTAATTATTCAATTAA+AGG - chr1_3:45021344-45021363 Msa0120330:intron 10.0%
!! TACTCTAATAAATATTAAAA+TGG - chr1_3:45021437-45021456 Msa0120330:intron 10.0%
!!! AGTTTTTTTTTTTCATAAAA+AGG + chr1_3:45023463-45023482 None:intergenic 10.0%
!! TTATACACAAAAAATGAAAT+TGG + chr1_3:45018032-45018051 None:intergenic 15.0%
!! TAATGATAGTTTAATGTTAA+TGG - chr1_3:45018072-45018091 Msa0120330:three_prime_UTR 15.0%
!! AATGATAGTTTAATGTTAAT+GGG - chr1_3:45018073-45018092 Msa0120330:three_prime_UTR 15.0%
!! AAATATTAGTATATGTGTTA+GGG - chr1_3:45018966-45018985 Msa0120330:intron 15.0%
!!! TTTCAGTTTTCATTTTTTAA+AGG - chr1_3:45019558-45019577 Msa0120330:intron 15.0%
!!! TTCAGTTTTCATTTTTTAAA+GGG - chr1_3:45019559-45019578 Msa0120330:intron 15.0%
!!! AACACAAGATAATATTTTTT+TGG + chr1_3:45020058-45020077 None:intergenic 15.0%
!!! TCCAAATTTTGAAAAATTTA+GGG + chr1_3:45020128-45020147 None:intergenic 15.0%
!!! TTCCAAATTTTGAAAAATTT+AGG + chr1_3:45020129-45020148 None:intergenic 15.0%
!!! TCATTTTAATTTTCAAGTTT+AGG + chr1_3:45020199-45020218 None:intergenic 15.0%
!!! TTTTGAACTTCATATATTAT+TGG - chr1_3:45020864-45020883 Msa0120330:CDS 15.0%
!! ATTAATTATTCAATTAAAGG+AGG - chr1_3:45021347-45021366 Msa0120330:intron 15.0%
!! CAATCAAGATTAAATAAAAT+AGG - chr1_3:45021413-45021432 Msa0120330:intron 15.0%
!! ACTAATTGCAATATAAAATA+TGG + chr1_3:45021753-45021772 None:intergenic 15.0%
!! AATCATTTATGAATTTCTTA+TGG + chr1_3:45022318-45022337 None:intergenic 15.0%
!! AATTCATAAATGATTTGAAA+TGG - chr1_3:45022323-45022342 Msa0120330:intron 15.0%
!! TCATTTGATGAATATATAAT+CGG - chr1_3:45022632-45022651 Msa0120330:CDS 15.0%
!! TTAAGTCACTAATAACAAAA+GGG + chr1_3:45018055-45018074 None:intergenic 20.0%
!! ATTAAGTCACTAATAACAAA+AGG + chr1_3:45018056-45018075 None:intergenic 20.0%
!!! TTATTTTTGCTTAAATGAAC+AGG - chr1_3:45018102-45018121 Msa0120330:exon 20.0%
!!! CATTTTGAACTTCAAATTTA+TGG + chr1_3:45018190-45018209 None:intergenic 20.0%
!!! CATAAATTTGAAGTTCAAAA+TGG - chr1_3:45018188-45018207 Msa0120330:CDS 20.0%
!!! GATAGAAAAATTGGATTTTT+AGG - chr1_3:45018324-45018343 Msa0120330:intron 20.0%
!! TATTTGTAAATCATGTACAA+CGG + chr1_3:45018951-45018970 None:intergenic 20.0%
!! CAAATATTAGTATATGTGTT+AGG - chr1_3:45018965-45018984 Msa0120330:intron 20.0%
!! TAAAATAAGTCAATGTTTGA+GGG + chr1_3:45018999-45019018 None:intergenic 20.0%
!! ATAAAATAAGTCAATGTTTG+AGG + chr1_3:45019000-45019019 None:intergenic 20.0%
!! TAGTACAAAATATCAAATAG+CGG - chr1_3:45019115-45019134 Msa0120330:intron 20.0%
!! TCTGATATCAAATACAAATT+TGG - chr1_3:45019400-45019419 Msa0120330:intron 20.0%
!! AATACAAATTTGGTTATTTG+TGG - chr1_3:45019410-45019429 Msa0120330:intron 20.0%
!!! ATATTTTCTGAAAGAAAACA+GGG + chr1_3:45019538-45019557 None:intergenic 20.0%
!!! AATATTTTCTGAAAGAAAAC+AGG + chr1_3:45019539-45019558 None:intergenic 20.0%
!!! GGTAAGATTTTATTAAAAAG+TGG + chr1_3:45019686-45019705 None:intergenic 20.0%
!!! ATTTTCAGAAACTTTCAAAA+TGG + chr1_3:45019894-45019913 None:intergenic 20.0%
!! AATTATAAAAGAAAATGGTG+AGG - chr1_3:45019932-45019951 Msa0120330:intron 20.0%
!!! ACAAGATAATATTTTTTTGG+TGG + chr1_3:45020055-45020074 None:intergenic 20.0%
!! TTATCTTGTGTTTATTAGTA+AGG - chr1_3:45020066-45020085 Msa0120330:intron 20.0%
!! TATCTTGTGTTTATTAGTAA+GGG - chr1_3:45020067-45020086 Msa0120330:intron 20.0%
!!! ACCCTAAATTTTTCAAAATT+TGG - chr1_3:45020124-45020143 Msa0120330:intron 20.0%
!!! AAATTAAAATGAACTTTTGC+AGG - chr1_3:45020207-45020226 Msa0120330:intron 20.0%
!! TAATATTGAAGTGCAATTTA+AGG - chr1_3:45020796-45020815 Msa0120330:CDS 20.0%
!! TAAAAAAACAACAAAGAGAT+GGG + chr1_3:45021121-45021140 None:intergenic 20.0%
!!! TGTTTCAAATTTTAAAGGAA+CGG + chr1_3:45021158-45021177 None:intergenic 20.0%
!! GATTCAAATTTAATAGTCAA+GGG + chr1_3:45021221-45021240 None:intergenic 20.0%
!! AGATTCAAATTTAATAGTCA+AGG + chr1_3:45021222-45021241 None:intergenic 20.0%
!! AGAAACATTTAAAGAAATCA+AGG + chr1_3:45021383-45021402 None:intergenic 20.0%
!! TAATAAATATTAAAATGGCC+TGG - chr1_3:45021442-45021461 Msa0120330:intron 20.0%
!! AAAAACTATTGCATACAAAA+GGG + chr1_3:45021971-45021990 None:intergenic 20.0%
!! TAAAAACTATTGCATACAAA+AGG + chr1_3:45021972-45021991 None:intergenic 20.0%
!!! TTTTTAATAGAATCGTTTAC+AGG - chr1_3:45021986-45022005 Msa0120330:intron 20.0%
!! CAAAAATTAAATTAGCACTA+GGG + chr1_3:45022049-45022068 None:intergenic 20.0%
!! TAAATTGCACAATTCATAAA+CGG + chr1_3:45022209-45022228 None:intergenic 20.0%
!!! AAGTATTTATTTTTTCCGTT+TGG + chr1_3:45022530-45022549 None:intergenic 20.0%
!! CTATATTAAATCAAATGACA+TGG + chr1_3:45022864-45022883 None:intergenic 20.0%
!!! CATGTCATTTGATTTAATAT+AGG - chr1_3:45022862-45022881 Msa0120330:CDS 20.0%
!! TGAAGTAAAAAATTATGCAT+TGG + chr1_3:45023202-45023221 None:intergenic 20.0%
!!! AATGCATAATTTTTTACTTC+AGG - chr1_3:45023201-45023220 Msa0120330:intron 20.0%
!!! ATGCATAATTTTTTACTTCA+GGG - chr1_3:45023202-45023221 Msa0120330:intron 20.0%
!! CTTATTCAAATATGTTAACA+AGG + chr1_3:45023356-45023375 None:intergenic 20.0%
! AAAAAATGAACAATGAGCAA+AGG - chr1_3:45017796-45017815 Msa0120330:three_prime_UTR 25.0%
! ATTTGATTGGAAAACTACAA+CGG + chr1_3:45017849-45017868 None:intergenic 25.0%
! TTACTGAATTACCAACTATT+TGG - chr1_3:45017999-45018018 Msa0120330:three_prime_UTR 25.0%
!!! GTTTTGGAAGAAAATTTTCT+GGG - chr1_3:45018124-45018143 Msa0120330:CDS 25.0%
! TTCATGAAATTAACTCTCAT+AGG + chr1_3:45018297-45018316 None:intergenic 25.0%
!! TTTTCAACTAATTCCAGTAA+TGG - chr1_3:45018381-45018400 Msa0120330:CDS 25.0%
! AAGATTAAAGTTATTGGTGT+GGG - chr1_3:45018576-45018595 Msa0120330:intron 25.0%
!! GGAGTTTTCTTAGTATTTAT+CGG - chr1_3:45018912-45018931 Msa0120330:intron 25.0%
!! ATTAGTTTCCTTTAAAGACA+AGG - chr1_3:45019471-45019490 Msa0120330:intron 25.0%
!! TTAGTTTCCTTTAAAGACAA+GGG - chr1_3:45019472-45019491 Msa0120330:intron 25.0%
!! CAAGACAATTTTTCTACTTT+TGG + chr1_3:45019624-45019643 None:intergenic 25.0%
! CAAAAGTAGAAAAATTGTCT+TGG - chr1_3:45019622-45019641 Msa0120330:intron 25.0%
! ACATGAATACAAGAAGTAAA+CGG - chr1_3:45020101-45020120 Msa0120330:intron 25.0%
! AAATAAAAGCAGTGTAGAAT+TGG + chr1_3:45020766-45020785 None:intergenic 25.0%
! GAAAAAAAAAAGAACAGCAT+GGG + chr1_3:45021099-45021118 None:intergenic 25.0%
! CTAAAAAAACAACAAAGAGA+TGG + chr1_3:45021122-45021141 None:intergenic 25.0%
!! CACGATGTTTCAAATTTTAA+AGG + chr1_3:45021163-45021182 None:intergenic 25.0%
!!! CTTTAAAATTTGAAACATCG+TGG - chr1_3:45021161-45021180 Msa0120330:intron 25.0%
! GAAATCAGTATGTACTATTT+AGG - chr1_3:45021589-45021608 Msa0120330:intron 25.0%
!! CAATTAGTATGAATTTTCTG+TGG - chr1_3:45021765-45021784 Msa0120330:intron 25.0%
! TTCACAGAAAAGTAAAACTA+TGG + chr1_3:45021850-45021869 None:intergenic 25.0%
! CCAAAAATTAAATTAGCACT+AGG + chr1_3:45022050-45022069 None:intergenic 25.0%
!!! CCTAGTGCTAATTTAATTTT+TGG - chr1_3:45022047-45022066 Msa0120330:intron 25.0%
! TGCTAAACACTATTATAACT+AGG + chr1_3:45022279-45022298 None:intergenic 25.0%
!! CTTTTCTCTGAATATTACTT+GGG + chr1_3:45022505-45022524 None:intergenic 25.0%
!!! TATTTTGTTTAGCTGGTATT+TGG - chr1_3:45022589-45022608 Msa0120330:CDS 25.0%
!!! ATTTTGTTTAGCTGGTATTT+GGG - chr1_3:45022590-45022609 Msa0120330:CDS 25.0%
! GTGAATGAATTAAATCCATA+TGG - chr1_3:45022818-45022837 Msa0120330:CDS 25.0%
! ATCAGAATTATGAGTATGAA+TGG + chr1_3:45022993-45023012 None:intergenic 25.0%
!!! TGCATAATTTTTTACTTCAG+GGG - chr1_3:45023203-45023222 Msa0120330:intron 25.0%
!! GTTATTAATAACATTGGTCT+AGG - chr1_3:45023225-45023244 Msa0120330:intron 25.0%
!!! ATTAGCTTGTATTCTTGTAT+AGG - chr1_3:45023379-45023398 Msa0120330:five_prime_UTR 25.0%
!!! TTAGCTTGTATTCTTGTATA+GGG - chr1_3:45023380-45023399 Msa0120330:five_prime_UTR 25.0%
! AAGGAAAATGTTCATAAAAC+AGG + chr1_3:45023444-45023463 None:intergenic 25.0%
TTTGATTGGAAAACTACAAC+GGG + chr1_3:45017848-45017867 None:intergenic 30.0%
! GTAAATGAAGAAAGCGTAAT+TGG + chr1_3:45017907-45017926 None:intergenic 30.0%
TTGGTGAAATACCAAATAGT+TGG + chr1_3:45018013-45018032 None:intergenic 30.0%
! TTGCTTAAATGAACAGGTTT+TGG - chr1_3:45018108-45018127 Msa0120330:exon 30.0%
!!! GGTTTTGGAAGAAAATTTTC+TGG - chr1_3:45018123-45018142 Msa0120330:CDS 30.0%
! AAGAAAATTTTCTGGGCAAA+TGG - chr1_3:45018131-45018150 Msa0120330:CDS 30.0%
TCCAATGCTATAAATTCAGA+AGG - chr1_3:45018240-45018259 Msa0120330:intron 30.0%
CCAATGCTATAAATTCAGAA+GGG - chr1_3:45018241-45018260 Msa0120330:intron 30.0%
CAATGCTATAAATTCAGAAG+GGG - chr1_3:45018242-45018261 Msa0120330:intron 30.0%
ATGATATGAACTACCATTAC+TGG + chr1_3:45018397-45018416 None:intergenic 30.0%
GAAGATTAAAGTTATTGGTG+TGG - chr1_3:45018575-45018594 Msa0120330:intron 30.0%
AGCTACTATATGACATCATT+GGG + chr1_3:45019070-45019089 None:intergenic 30.0%
TAGCTACTATATGACATCAT+TGG + chr1_3:45019071-45019090 None:intergenic 30.0%
AGTTATCAGTAGTTCAATCA+AGG + chr1_3:45019215-45019234 None:intergenic 30.0%
ATTGGTTAAGCAGTTAAAAC+GGG + chr1_3:45019707-45019726 None:intergenic 30.0%
! CATTGGTTAAGCAGTTAAAA+CGG + chr1_3:45019708-45019727 None:intergenic 30.0%
CAATTGTGATAGAGAAAAGA+TGG - chr1_3:45019817-45019836 Msa0120330:intron 30.0%
TAGAGAAAAGATGGAATGAA+AGG - chr1_3:45019826-45019845 Msa0120330:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr1_3:45020014-45020033 Msa0120330:intron 30.0%
!!! AATATTTTTTTGGTGGTGTC+CGG + chr1_3:45020048-45020067 None:intergenic 30.0%
TTCGTCCTTCAAATGAAAAA+GGG + chr1_3:45020327-45020346 None:intergenic 30.0%
TTTCGTCCTTCAAATGAAAA+AGG + chr1_3:45020328-45020347 None:intergenic 30.0%
AAAGATAATGCATGAACAAC+AGG + chr1_3:45020560-45020579 None:intergenic 30.0%
!!! TGACATTTTTTGTGTGTTCA+AGG - chr1_3:45020898-45020917 Msa0120330:CDS 30.0%
!!! GACATTTTTTGTGTGTTCAA+GGG - chr1_3:45020899-45020918 Msa0120330:CDS 30.0%
TCTATACCAATATCCAGTAA+AGG + chr1_3:45020967-45020986 None:intergenic 30.0%
GGAAAAAAAAAAGAACAGCA+TGG + chr1_3:45021100-45021119 None:intergenic 30.0%
!! TCAAATTTTAAAGGAACGGA+GGG + chr1_3:45021154-45021173 None:intergenic 30.0%
!! TTCAAATTTTAAAGGAACGG+AGG + chr1_3:45021155-45021174 None:intergenic 30.0%
TCAAATTTAATAGTCAAGGG+TGG + chr1_3:45021218-45021237 None:intergenic 30.0%
CAAAATATGAAAAGGAAACC+TGG + chr1_3:45021280-45021299 None:intergenic 30.0%
! CAGGTTTCCTTTTCATATTT+TGG - chr1_3:45021278-45021297 Msa0120330:intron 30.0%
TAAATATTAAAATGGCCTGG+TGG - chr1_3:45021445-45021464 Msa0120330:intron 30.0%
TCTTATAGTCATGTATCCAT+TGG - chr1_3:45021716-45021735 Msa0120330:intron 30.0%
TATGGAAGACATTATTCCAA+TGG + chr1_3:45021735-45021754 None:intergenic 30.0%
TCTGTCTATTAAACTCATCA+TGG - chr1_3:45021935-45021954 Msa0120330:intron 30.0%
ACAAGTGTATAAAGATCAGT+AGG - chr1_3:45022351-45022370 Msa0120330:intron 30.0%
! CTTTGAGGACTAAATATTTG+TGG + chr1_3:45022442-45022461 None:intergenic 30.0%
! AATGTCCTTTTATCACTCTA+TGG - chr1_3:45022470-45022489 Msa0120330:CDS 30.0%
! TGAATATTACTTGGGTTTTG+TGG + chr1_3:45022497-45022516 None:intergenic 30.0%
! CCTTTTCTCTGAATATTACT+TGG + chr1_3:45022506-45022525 None:intergenic 30.0%
CCAAGTAATATTCAGAGAAA+AGG - chr1_3:45022503-45022522 Msa0120330:CDS 30.0%
CCAGCTAAACAAAATATAAC+CGG + chr1_3:45022585-45022604 None:intergenic 30.0%
!! TTTTGTTTAGCTGGTATTTG+GGG - chr1_3:45022591-45022610 Msa0120330:CDS 30.0%
CATGTTGATCATATTCCATA+TGG + chr1_3:45022836-45022855 None:intergenic 30.0%
CATATGGAATATGATCAACA+TGG - chr1_3:45022834-45022853 Msa0120330:CDS 30.0%
AGCATAACATTAATTGCAAC+CGG - chr1_3:45022887-45022906 Msa0120330:CDS 30.0%
GATTTGAATTATACCTGTAG+TGG + chr1_3:45022944-45022963 None:intergenic 30.0%
AATTATGAGTATGAATGGCA+TGG + chr1_3:45022988-45023007 None:intergenic 30.0%
! CCTTTCTTCTTTAAGAAATC+AGG + chr1_3:45023120-45023139 None:intergenic 30.0%
CCTGATTTCTTAAAGAAGAA+AGG - chr1_3:45023117-45023136 Msa0120330:intron 30.0%
TCAGGGGTTATTAATAACAT+TGG - chr1_3:45023219-45023238 Msa0120330:intron 30.0%
! AAGAGTTGTTCATACAGTTT+TGG - chr1_3:45023289-45023308 Msa0120330:intron 30.0%
!! CAGAGCTTGTTATAATTCTT+TGG - chr1_3:45023418-45023437 Msa0120330:five_prime_UTR 30.0%
AAATGAACAATGAGCAAAGG+TGG - chr1_3:45017799-45017818 Msa0120330:three_prime_UTR 35.0%
AGTTGTGGGAATCATTTGAT+TGG + chr1_3:45017862-45017881 None:intergenic 35.0%
CCCTTCTGAATTTATAGCAT+TGG + chr1_3:45018244-45018263 None:intergenic 35.0%
TTAGGTAGTGAGAGAAAGTT+AGG - chr1_3:45018342-45018361 Msa0120330:CDS 35.0%
AGATATATCCTCTAAGCTCT+CGG + chr1_3:45018532-45018551 None:intergenic 35.0%
TAGTGAGAGTAATTACAGTC+AGG - chr1_3:45018551-45018570 Msa0120330:intron 35.0%
CAGGCGAAGATTAAAGTTAT+TGG - chr1_3:45018570-45018589 Msa0120330:intron 35.0%
ATTAAAGTTATTGGTGTGGG+AGG - chr1_3:45018579-45018598 Msa0120330:intron 35.0%
TTCAAATGTTGCTGTGAAGT+AGG + chr1_3:45019163-45019182 None:intergenic 35.0%
CAATACCTCGTTATACAGTA+GGG - chr1_3:45019273-45019292 Msa0120330:intron 35.0%
TGTTGATCCCTTGTCTTTAA+AGG + chr1_3:45019482-45019501 None:intergenic 35.0%
!!! ATATTTTTTTGGTGGTGTCC+GGG + chr1_3:45020047-45020066 None:intergenic 35.0%
! TAAAATGAACTTTTGCAGGC+TGG - chr1_3:45020211-45020230 Msa0120330:intron 35.0%
TTTGCAACACCAGCAATAAT+CGG + chr1_3:45020268-45020287 None:intergenic 35.0%
TCGTCCTTCAAATGAAAAAG+GGG + chr1_3:45020326-45020345 None:intergenic 35.0%
AATTCCTTCTTGTGCTTGAA+TGG + chr1_3:45020356-45020375 None:intergenic 35.0%
! GCAGTTAATAGCTTGTCATT+TGG + chr1_3:45020418-45020437 None:intergenic 35.0%
AATCAACATTTACCATCCCA+GGG + chr1_3:45020636-45020655 None:intergenic 35.0%
AAATCAACATTTACCATCCC+AGG + chr1_3:45020637-45020656 None:intergenic 35.0%
TGCTGATATTCGAGCTATAA+TGG - chr1_3:45020657-45020676 Msa0120330:intron 35.0%
TACTGGATATTGGTATAGAG+AGG - chr1_3:45020968-45020987 Msa0120330:CDS 35.0%
ACTGGATATTGGTATAGAGA+GGG - chr1_3:45020969-45020988 Msa0120330:CDS 35.0%
! TTTGAAACATCGTGGTACTA+TGG - chr1_3:45021169-45021188 Msa0120330:intron 35.0%
TTGAAACATCGTGGTACTAT+GGG - chr1_3:45021170-45021189 Msa0120330:intron 35.0%
TAATAGTCAAGGGTGGATAT+AGG + chr1_3:45021211-45021230 None:intergenic 35.0%
CCACATGCCAAAATATGAAA+AGG + chr1_3:45021288-45021307 None:intergenic 35.0%
!!! CCTTTTCATATTTTGGCATG+TGG - chr1_3:45021285-45021304 Msa0120330:intron 35.0%
! TTGCAAACTTCGACTTTTGT+TGG - chr1_3:45021875-45021894 Msa0120330:intron 35.0%
TTGGAGCTAATACTTGTTTG+AGG - chr1_3:45021894-45021913 Msa0120330:intron 35.0%
GTAATAGATCCTTCACTTAC+TGG - chr1_3:45022074-45022093 Msa0120330:intron 35.0%
TTGCACAATTCATAAACGGT+GGG + chr1_3:45022205-45022224 None:intergenic 35.0%
ATTGCACAATTCATAAACGG+TGG + chr1_3:45022206-45022225 None:intergenic 35.0%
TGTGCAATTTACAGCATTTC+CGG - chr1_3:45022218-45022237 Msa0120330:intron 35.0%
ATAAAGATCAGTAGGTAGCT+CGG - chr1_3:45022359-45022378 Msa0120330:intron 35.0%
! GGACATTCTCTATTTCTTTG+AGG + chr1_3:45022457-45022476 None:intergenic 35.0%
ATTCAGAGAAAAGGACCAAA+CGG - chr1_3:45022512-45022531 Msa0120330:CDS 35.0%
!! CCGGTTATATTTTGTTTAGC+TGG - chr1_3:45022582-45022601 Msa0120330:CDS 35.0%
! AAAGAAATGCACAGAGCATT+GGG + chr1_3:45023178-45023197 None:intergenic 35.0%
AATGATTCCCACAACTTCTC+AGG - chr1_3:45017866-45017885 Msa0120330:three_prime_UTR 40.0%
AGAGAAACCTGAGAAGTTGT+GGG + chr1_3:45017876-45017895 None:intergenic 40.0%
AAGAGAAACCTGAGAAGTTG+TGG + chr1_3:45017877-45017896 None:intergenic 40.0%
! GGGGTGTTTAATGTTGTTAG+AGG - chr1_3:45018261-45018280 Msa0120330:intron 40.0%
GCAGATGTAAAAAAGGGTCA+TGG + chr1_3:45018422-45018441 None:intergenic 40.0%
CGGGATGCAGATGTAAAAAA+GGG + chr1_3:45018428-45018447 None:intergenic 40.0%
TCGGGATGCAGATGTAAAAA+AGG + chr1_3:45018429-45018448 None:intergenic 40.0%
!!! TTTTTTACATCTGCATCCCG+AGG - chr1_3:45018428-45018447 Msa0120330:intron 40.0%
AAACTAGAACTGCCCTTTCT+CGG + chr1_3:45018495-45018514 None:intergenic 40.0%
!! AGAAAGGGCAGTTCTAGTTT+GGG - chr1_3:45018495-45018514 Msa0120330:intron 40.0%
ATGATAGAGAGTTCGATGCA+CGG - chr1_3:45018627-45018646 Msa0120330:intron 40.0%
CGAGTGCTTTATGCTATGTT+AGG - chr1_3:45019250-45019269 Msa0120330:CDS 40.0%
GCAATACCTCGTTATACAGT+AGG - chr1_3:45019272-45019291 Msa0120330:intron 40.0%
ATTGTCCCTACTGTATAACG+AGG + chr1_3:45019281-45019300 None:intergenic 40.0%
! GGTGTTTCTTTTAGTAGTGC+AGG - chr1_3:45019431-45019450 Msa0120330:intron 40.0%
! GTTTCTTTTAGTAGTGCAGG+AGG - chr1_3:45019434-45019453 Msa0120330:intron 40.0%
AGTAGATGAAAGACTCGTGT+AGG - chr1_3:45019791-45019810 Msa0120330:intron 40.0%
GTAGATGAAAGACTCGTGTA+GGG - chr1_3:45019792-45019811 Msa0120330:intron 40.0%
TATATGCAAGGTTCAAACCC+CGG - chr1_3:45020026-45020045 Msa0120330:intron 40.0%
!!! TATTTTTTTGGTGGTGTCCG+GGG + chr1_3:45020046-45020065 None:intergenic 40.0%
! TCAATGGGTATACTGACTGT+TGG - chr1_3:45020289-45020308 Msa0120330:CDS 40.0%
! CAATGGGTATACTGACTGTT+GGG - chr1_3:45020290-45020309 Msa0120330:CDS 40.0%
!! ACGACCCCTTTTTCATTTGA+AGG - chr1_3:45020319-45020338 Msa0120330:CDS 40.0%
AGATCCATTCAAGCACAAGA+AGG - chr1_3:45020349-45020368 Msa0120330:intron 40.0%
TTCTCAATCTACCCCTGTAA+CGG - chr1_3:45020441-45020460 Msa0120330:intron 40.0%
ATTGAATGCTTCCGTTACAG+GGG + chr1_3:45020455-45020474 None:intergenic 40.0%
GATTGAATGCTTCCGTTACA+GGG + chr1_3:45020456-45020475 None:intergenic 40.0%
AGATTGAATGCTTCCGTTAC+AGG + chr1_3:45020457-45020476 None:intergenic 40.0%
TGCTGATGATATTCTTCGAC+AGG - chr1_3:45020477-45020496 Msa0120330:intron 40.0%
GCTGATGATATTCTTCGACA+GGG - chr1_3:45020478-45020497 Msa0120330:intron 40.0%
!! AATGCTGGTTCTTCACTGAT+GGG - chr1_3:45020682-45020701 Msa0120330:intron 40.0%
! AGGCTCTTTTCTGCAATTGT+TGG - chr1_3:45020816-45020835 Msa0120330:CDS 40.0%
TGTGTGTTCAAGGGAAAACA+AGG - chr1_3:45020908-45020927 Msa0120330:CDS 40.0%
GTGTGTTCAAGGGAAAACAA+GGG - chr1_3:45020909-45020928 Msa0120330:CDS 40.0%
TGCTATTCAGTCTCCTTTAC+TGG - chr1_3:45020951-45020970 Msa0120330:CDS 40.0%
CAGTCTCCTTTACTGGATAT+TGG - chr1_3:45020958-45020977 Msa0120330:CDS 40.0%
GGAATTGTGTGGAACATAAC+TGG - chr1_3:45020997-45021016 Msa0120330:CDS 40.0%
ATTGTGTGGAACATAACTGG+TGG - chr1_3:45021000-45021019 Msa0120330:CDS 40.0%
TTGTGTGGAACATAACTGGT+GGG - chr1_3:45021001-45021020 Msa0120330:CDS 40.0%
! GAGTGATCTGACTTTGTTTG+AGG - chr1_3:45021023-45021042 Msa0120330:CDS 40.0%
! ATCTGACTTTGTTTGAGGTG+AGG - chr1_3:45021028-45021047 Msa0120330:CDS 40.0%
! TCTGACTTTGTTTGAGGTGA+GGG - chr1_3:45021029-45021048 Msa0120330:CDS 40.0%
GCACAGCTGAAACATATACT+TGG + chr1_3:45021077-45021096 None:intergenic 40.0%
TATACTCTTCTCATGAAGCC+AGG - chr1_3:45021259-45021278 Msa0120330:intron 40.0%
CTTACATGACCAGTAAGTGA+AGG + chr1_3:45022086-45022105 None:intergenic 40.0%
ATTCATAAACGGTGGGATAG+TGG + chr1_3:45022198-45022217 None:intergenic 40.0%
GTGCAATTTACAGCATTTCC+GGG - chr1_3:45022219-45022238 Msa0120330:intron 40.0%
CCGATTATCTTCTTCTCCTA+GGG + chr1_3:45022248-45022267 None:intergenic 40.0%
CCCTAGGAGAAGAAGATAAT+CGG - chr1_3:45022245-45022264 Msa0120330:intron 40.0%
CATCGAAATGATTCGATCTC+TGG - chr1_3:45022398-45022417 Msa0120330:intron 40.0%
GTGGTCCATAGAGTGATAAA+AGG + chr1_3:45022478-45022497 None:intergenic 40.0%
ATGAGTATGAATGGCATGGA+TGG + chr1_3:45022984-45023003 None:intergenic 40.0%
!! GCAGAAGAGTATTAAACCCT+AGG + chr1_3:45023156-45023175 None:intergenic 40.0%
CAAAGAAATGCACAGAGCAT+TGG + chr1_3:45023179-45023198 None:intergenic 40.0%
!! ACCTCTAAGCATCGAAACCT+CGG + chr1_3:45018448-45018467 None:intergenic 45.0%
ACGGTGAATGTTCCGAGAAA+GGG - chr1_3:45018480-45018499 Msa0120330:intron 45.0%
! GAGAAAGGGCAGTTCTAGTT+TGG - chr1_3:45018494-45018513 Msa0120330:intron 45.0%
GGATTTATCCGAGAGCTTAG+AGG - chr1_3:45018521-45018540 Msa0120330:intron 45.0%
AAAGTTATTGGTGTGGGAGG+TGG - chr1_3:45018582-45018601 Msa0120330:intron 45.0%
GTTCCAAACCAATCTGCAGA+CGG + chr1_3:45018719-45018738 None:intergenic 45.0%
!! ATTGGTTTGGAACTTACGCG+AGG - chr1_3:45018726-45018745 Msa0120330:intron 45.0%
CAGCATTCATTCCCATCTCA+GGG + chr1_3:45018770-45018789 None:intergenic 45.0%
AAGCAGAGAGTCGATTGAAG+AGG - chr1_3:45018797-45018816 Msa0120330:intron 45.0%
TCGATTGAAGAGGCGGTTTA+TGG - chr1_3:45018807-45018826 Msa0120330:intron 45.0%
! TCAAAGAGCTCTAGTGAGAG+AGG + chr1_3:45019034-45019053 None:intergenic 45.0%
AAGTAGGACTACAGGGCTAT+AGG + chr1_3:45019147-45019166 None:intergenic 45.0%
TGCTGTGAAGTAGGACTACA+GGG + chr1_3:45019154-45019173 None:intergenic 45.0%
TTGCTGTGAAGTAGGACTAC+AGG + chr1_3:45019155-45019174 None:intergenic 45.0%
! ATTTGGAACAGACGTGCTTG+CGG - chr1_3:45020141-45020160 Msa0120330:intron 45.0%
! TGAACTTTTGCAGGCTGGAA+TGG - chr1_3:45020216-45020235 Msa0120330:intron 45.0%
! GAACTTTTGCAGGCTGGAAT+GGG - chr1_3:45020217-45020236 Msa0120330:intron 45.0%
!! TGCTGGTGTTGCAAAGTCAA+TGG - chr1_3:45020273-45020292 Msa0120330:CDS 45.0%
!! GCTGGTGTTGCAAAGTCAAT+GGG - chr1_3:45020274-45020293 Msa0120330:CDS 45.0%
CATCAGTGAAGAACCAGCAT+TGG + chr1_3:45020683-45020702 None:intergenic 45.0%
!! CAATGCTGGTTCTTCACTGA+TGG - chr1_3:45020681-45020700 Msa0120330:intron 45.0%
!! ATGCTGGTTCTTCACTGATG+GGG - chr1_3:45020683-45020702 Msa0120330:intron 45.0%
ATTGGTATAGAGAGGGCTAC+TGG - chr1_3:45020976-45020995 Msa0120330:CDS 45.0%
TGGTACTATGGGAAGTTGCT+AGG - chr1_3:45021181-45021200 Msa0120330:intron 45.0%
GGTACTATGGGAAGTTGCTA+GGG - chr1_3:45021182-45021201 Msa0120330:intron 45.0%
GTACTATGGGAAGTTGCTAG+GGG - chr1_3:45021183-45021202 Msa0120330:intron 45.0%
! TTAAAATGGCCTGGTGGTGT+TGG - chr1_3:45021451-45021470 Msa0120330:intron 45.0%
CTAAACAAGCCCACCCAAAT+TGG + chr1_3:45021533-45021552 None:intergenic 45.0%
AGAAGTTATCTACGACCTCG+TGG - chr1_3:45022022-45022041 Msa0120330:intron 45.0%
GCCGATTATCTTCTTCTCCT+AGG + chr1_3:45022249-45022268 None:intergenic 45.0%
TCTTGTACTGTGAGCTTCTC+CGG - chr1_3:45022563-45022582 Msa0120330:CDS 45.0%
TTCCTCTTGACGCTTGAATC+CGG + chr1_3:45022909-45022928 None:intergenic 45.0%
ACATGAAGAGAAGCCACTAC+AGG - chr1_3:45022928-45022947 Msa0120330:CDS 45.0%
ATGAATGGCATGGATGGAGA+GGG + chr1_3:45022978-45022997 None:intergenic 45.0%
TATGAATGGCATGGATGGAG+AGG + chr1_3:45022979-45022998 None:intergenic 45.0%
ACTACCATCATCAGAGAACG+AGG + chr1_3:45023085-45023104 None:intergenic 45.0%
!!! ATTAACATATATTTTAAAAA+AGG + chr1_3:45019756-45019775 None:intergenic 5.0%
!!! TAATTTAAAAATCATATTTT+TGG + chr1_3:45021632-45021651 None:intergenic 5.0%
ACAATGAGCAAAGGTGGTCG+TGG - chr1_3:45017805-45017824 Msa0120330:three_prime_UTR 50.0%
!! CCTCTAAGCATCGAAACCTC+GGG + chr1_3:45018447-45018466 None:intergenic 50.0%
GGTTTCGATGCTTAGAGGTG+AGG - chr1_3:45018449-45018468 Msa0120330:intron 50.0%
CACGGTGAATGTTCCGAGAA+AGG - chr1_3:45018479-45018498 Msa0120330:intron 50.0%
! CGATGCACGGAGTTGAGTTT+TGG - chr1_3:45018640-45018659 Msa0120330:intron 50.0%
AGACGGTTCTCAGGAAACAC+AGG + chr1_3:45018702-45018721 None:intergenic 50.0%
! GAACCGTCTGCAGATTGGTT+TGG - chr1_3:45018713-45018732 Msa0120330:intron 50.0%
TTGGAACTTACGCGAGGTCT+TGG - chr1_3:45018732-45018751 Msa0120330:intron 50.0%
GCAGCATTCATTCCCATCTC+AGG + chr1_3:45018771-45018790 None:intergenic 50.0%
CAGAGAGTCGATTGAAGAGG+CGG - chr1_3:45018800-45018819 Msa0120330:intron 50.0%
GGCGGTTTATGGAGCTGATA+TGG - chr1_3:45018818-45018837 Msa0120330:intron 50.0%
AGCTCTTTGAGCTAGAAGCG+CGG - chr1_3:45019044-45019063 Msa0120330:intron 50.0%
AAGGCTGTCAGTGTTGTCGA+CGG + chr1_3:45019196-45019215 None:intergenic 50.0%
AGAACGTTAACCAGTGCCCT+CGG + chr1_3:45019733-45019752 None:intergenic 50.0%
TGAGCTTAGCTCAGTCGGTA+GGG - chr1_3:45019992-45020011 Msa0120330:intron 50.0%
ACTTACTGAGTGCAGATCCC+TGG - chr1_3:45020616-45020635 Msa0120330:CDS 50.0%
CTTACTGAGTGCAGATCCCT+GGG - chr1_3:45020617-45020636 Msa0120330:CDS 50.0%
CGAGCTATAATGGCCAATGC+TGG - chr1_3:45020667-45020686 Msa0120330:intron 50.0%
GGTTCTTCACTGATGGGGAT+AGG - chr1_3:45020688-45020707 Msa0120330:intron 50.0%
ATGGGGATAGGAACTGCAAC+TGG - chr1_3:45020700-45020719 Msa0120330:intron 50.0%
AGAGGGCTACTGGAATTGTG+TGG - chr1_3:45020986-45021005 Msa0120330:CDS 50.0%
AATTAGCACTAGGGTCCACG+AGG + chr1_3:45022040-45022059 None:intergenic 50.0%
CTTCTTCTCCTAGGGATACC+CGG + chr1_3:45022240-45022259 None:intergenic 50.0%
AACCGGATTCAAGCGTCAAG+AGG - chr1_3:45022904-45022923 Msa0120330:CDS 50.0%
TGGATGGAGAGGGAATGAGA+GGG + chr1_3:45022968-45022987 None:intergenic 50.0%
ATGGATGGAGAGGGAATGAG+AGG + chr1_3:45022969-45022988 None:intergenic 50.0%
! ACAGACTAGTCAGCTCACTC+AGG - chr1_3:45023026-45023045 Msa0120330:CDS 50.0%
! CAGACTAGTCAGCTCACTCA+GGG - chr1_3:45023027-45023046 Msa0120330:CDS 50.0%
CCATCATCAGAGAACGAGGA+AGG + chr1_3:45023081-45023100 None:intergenic 50.0%
CCTTCCTCGTTCTCTGATGA+TGG - chr1_3:45023078-45023097 Msa0120330:intron 50.0%
CCCGAGGTTTCGATGCTTAG+AGG - chr1_3:45018444-45018463 Msa0120330:intron 55.0%
TAGAGGTGAGGCGAGTAGCA+CGG - chr1_3:45018461-45018480 Msa0120330:intron 55.0%
!! GGGCAGTTCTAGTTTGGGTG+AGG - chr1_3:45018500-45018519 Msa0120330:intron 55.0%
GTTATTGGTGTGGGAGGTGG+TGG - chr1_3:45018585-45018604 Msa0120330:intron 55.0%
CCAATCTGCAGACGGTTCTC+AGG + chr1_3:45018711-45018730 None:intergenic 55.0%
CCTGAGAACCGTCTGCAGAT+TGG - chr1_3:45018708-45018727 Msa0120330:intron 55.0%
AGCTGGTGGTAACCCTGAGA+TGG - chr1_3:45018755-45018774 Msa0120330:intron 55.0%
GCTGGTGGTAACCCTGAGAT+GGG - chr1_3:45018756-45018775 Msa0120330:intron 55.0%
!! GGTCTTGTTAACCAGTGCCC+CGG - chr1_3:45019580-45019599 Msa0120330:intron 55.0%
! GTCTTGTTAACCAGTGCCCC+GGG - chr1_3:45019581-45019600 Msa0120330:intron 55.0%
TCTTGTTAACCAGTGCCCCG+GGG - chr1_3:45019582-45019601 Msa0120330:intron 55.0%
ATTCCTTAACCAGTGCCCCC+GGG + chr1_3:45019601-45019620 None:intergenic 55.0%
GATTCCTTAACCAGTGCCCC+CGG + chr1_3:45019602-45019621 None:intergenic 55.0%
ACTGCTTAACCAATGCCCCG+AGG - chr1_3:45019713-45019732 Msa0120330:intron 55.0%
CTGCTTAACCAATGCCCCGA+GGG - chr1_3:45019714-45019733 Msa0120330:intron 55.0%
AACGTTAACCAGTGCCCTCG+GGG + chr1_3:45019731-45019750 None:intergenic 55.0%
GAACGTTAACCAGTGCCCTC+GGG + chr1_3:45019732-45019751 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+CGG - chr1_3:45019987-45020006 Msa0120330:intron 55.0%
GTGAGCTTAGCTCAGTCGGT+AGG - chr1_3:45019991-45020010 Msa0120330:intron 55.0%
! CTTTTGCAGGCTGGAATGGG+TGG - chr1_3:45020220-45020239 Msa0120330:intron 55.0%
GGTGGTGCTCCGATTATTGC+TGG - chr1_3:45020256-45020275 Msa0120330:CDS 55.0%
! ATTCTTCGACAGGGCGTTCG+TGG - chr1_3:45020487-45020506 Msa0120330:intron 55.0%
!! GTGGTGTTGGCTTGAGACCT+TGG - chr1_3:45021464-45021483 Msa0120330:intron 55.0%
! TTGGGGAGGAGCATACTCCA+AGG + chr1_3:45021484-45021503 None:intergenic 55.0%
TTGGAGTATGCTCCTCCCCA+AGG - chr1_3:45021483-45021502 Msa0120330:intron 55.0%
AGGCTCGAACCAGAGACCTT+GGG + chr1_3:45021502-45021521 None:intergenic 55.0%
!! AGCCTCCTCGGTGCCAATTT+GGG - chr1_3:45021517-45021536 Msa0120330:intron 55.0%
!! TCCTCGGTGCCAATTTGGGT+GGG - chr1_3:45021521-45021540 Msa0120330:intron 55.0%
CAGCATTTCCGGGTATCCCT+AGG - chr1_3:45022229-45022248 Msa0120330:intron 55.0%
AAGGACGCTCACGCTATCCT+AGG - chr1_3:45023136-45023155 Msa0120330:intron 55.0%
AGGACGCTCACGCTATCCTA+GGG - chr1_3:45023137-45023156 Msa0120330:intron 55.0%
!! GGGAGGTGGTGGATCTAACG+CGG - chr1_3:45018596-45018615 Msa0120330:intron 60.0%
CTTACGCGAGGTCTTGGAGC+TGG - chr1_3:45018738-45018757 Msa0120330:intron 60.0%
CTTGTTAACCAGTGCCCCGG+GGG - chr1_3:45019583-45019602 Msa0120330:intron 60.0%
TTCCTTAACCAGTGCCCCCG+GGG + chr1_3:45019600-45019619 None:intergenic 60.0%
CCGACTGAGCTAAGCTCACG+AGG + chr1_3:45019990-45020009 None:intergenic 60.0%
TTGCAGGCTGGAATGGGTGG+TGG - chr1_3:45020223-45020242 Msa0120330:intron 60.0%
!! GCTGGAATGGGTGGTGGAAC+CGG - chr1_3:45020229-45020248 Msa0120330:intron 60.0%
! AATCGGAGCACCACCTGTGC+CGG + chr1_3:45020251-45020270 None:intergenic 60.0%
CTGAGTGCAGATCCCTGGGA+TGG - chr1_3:45020621-45020640 Msa0120330:CDS 60.0%
GGTCTCAAGCCAACACCACC+AGG + chr1_3:45021463-45021482 None:intergenic 60.0%
ATGCTCCTCCCCAAGGTCTC+TGG - chr1_3:45021490-45021509 Msa0120330:intron 60.0%
TCGAACCAGAGACCTTGGGG+AGG + chr1_3:45021498-45021517 None:intergenic 60.0%
GGCTCGAACCAGAGACCTTG+GGG + chr1_3:45021501-45021520 None:intergenic 60.0%
GAGGCTCGAACCAGAGACCT+TGG + chr1_3:45021503-45021522 None:intergenic 60.0%
! GTCTCTGGTTCGAGCCTCCT+CGG - chr1_3:45021505-45021524 Msa0120330:intron 60.0%
!! GAGCCTCCTCGGTGCCAATT+TGG - chr1_3:45021516-45021535 Msa0120330:intron 60.0%
! CACCCAAATTGGCACCGAGG+AGG + chr1_3:45021522-45021541 None:intergenic 60.0%
!! CTCCTCGGTGCCAATTTGGG+TGG - chr1_3:45021520-45021539 Msa0120330:intron 60.0%
ACGCGAGGTCTTGGAGCTGG+TGG - chr1_3:45018741-45018760 Msa0120330:intron 65.0%
! AACCAATGCCCCGAGGGCAC+TGG - chr1_3:45019720-45019739 Msa0120330:intron 65.0%
AACCAGTGCCCTCGGGGCAT+TGG + chr1_3:45019725-45019744 None:intergenic 65.0%
!! ATGGGTGGTGGAACCGGCAC+AGG - chr1_3:45020235-45020254 Msa0120330:intron 65.0%
GCCCACCCAAATTGGCACCG+AGG + chr1_3:45021525-45021544 None:intergenic 65.0%
!! TGCCCCGGGGGCACTGGTTA+AGG - chr1_3:45019595-45019614 Msa0120330:intron 70.0%
!! GGTGGTGGAACCGGCACAGG+TGG - chr1_3:45020238-45020257 Msa0120330:intron 70.0%
! AACCAGTGCCCCGGGGGCAC+TGG - chr1_3:45019589-45019608 Msa0120330:intron 75.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr1_3:45019594-45019613 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 45017795 45023490 45017795 ID=Msa0120330;Name=Msa0120330
chr1_3 mRNA 45017795 45023490 45017795 ID=Msa0120330-mRNA-1;Parent=Msa0120330;Name=Msa0120330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=209|1|1|1|0.85|0.75|8|326|484
chr1_3 exon 45017795 45018255 45017795 ID=Msa0120330-mRNA-1:exon:13529;Parent=Msa0120330-mRNA-1
chr1_3 exon 45018336 45018401 45018336 ID=Msa0120330-mRNA-1:exon:13528;Parent=Msa0120330-mRNA-1
chr1_3 exon 45019185 45019277 45019185 ID=Msa0120330-mRNA-1:exon:13527;Parent=Msa0120330-mRNA-1
chr1_3 exon 45020241 45020365 45020241 ID=Msa0120330-mRNA-1:exon:13526;Parent=Msa0120330-mRNA-1
chr1_3 exon 45020564 45020654 45020564 ID=Msa0120330-mRNA-1:exon:13525;Parent=Msa0120330-mRNA-1
chr1_3 exon 45020757 45021056 45020757 ID=Msa0120330-mRNA-1:exon:13524;Parent=Msa0120330-mRNA-1
chr1_3 exon 45022434 45023094 45022434 ID=Msa0120330-mRNA-1:exon:13523;Parent=Msa0120330-mRNA-1
chr1_3 exon 45023298 45023490 45023298 ID=Msa0120330-mRNA-1:exon:13522;Parent=Msa0120330-mRNA-1
chr1_3 five_prime_UTR 45023298 45023490 45023298 ID=Msa0120330-mRNA-1:five_prime_utr;Parent=Msa0120330-mRNA-1
chr1_3 five_prime_UTR 45023079 45023094 45023079 ID=Msa0120330-mRNA-1:five_prime_utr;Parent=Msa0120330-mRNA-1
chr1_3 CDS 45022434 45023078 45022434 ID=Msa0120330-mRNA-1:cds;Parent=Msa0120330-mRNA-1
chr1_3 CDS 45020757 45021056 45020757 ID=Msa0120330-mRNA-1:cds;Parent=Msa0120330-mRNA-1
chr1_3 CDS 45020564 45020654 45020564 ID=Msa0120330-mRNA-1:cds;Parent=Msa0120330-mRNA-1
chr1_3 CDS 45020241 45020365 45020241 ID=Msa0120330-mRNA-1:cds;Parent=Msa0120330-mRNA-1
chr1_3 CDS 45019185 45019277 45019185 ID=Msa0120330-mRNA-1:cds;Parent=Msa0120330-mRNA-1
chr1_3 CDS 45018336 45018401 45018336 ID=Msa0120330-mRNA-1:cds;Parent=Msa0120330-mRNA-1
chr1_3 CDS 45018121 45018255 45018121 ID=Msa0120330-mRNA-1:cds;Parent=Msa0120330-mRNA-1
chr1_3 three_prime_UTR 45017795 45018120 45017795 ID=Msa0120330-mRNA-1:three_prime_utr;Parent=Msa0120330-mRNA-1
Gene Sequence

>Msa0120330

ATGGTGACTTGTGTGTCAACAAATTTTGCACATTCCAATGCTATAAATTCAGAAGGGGTGTTTAATGTTGTTAGAGGAAGAAAATTTCCTATGAGAGTTAATTTCATGAAAATTTTTGATAGAAAAATTGGATTTTTAGGTAGTGAGAGAAAGTTAGGTTTAGTTCAAGTTAAGTTTTCAACTAATTCCAGTAATGGTAGTTCATATCATAGCCATGACCCTTTTTTACATCTGCATCCCGAGGTTTCGATGCTTAGAGGTGAGGCGAGTAGCACGGTGAATGTTCCGAGAAAGGGCAGTTCTAGTTTGGGTGAGGATTTATCCGAGAGCTTAGAGGATATATCTAGTGAGAGTAATTACAGTCAGGCGAAGATTAAAGTTATTGGTGTGGGAGGTGGTGGATCTAACGCGGTGAATCGTATGATAGAGAGTTCGATGCACGGAGTTGAGTTTTGGATTGTTAATACTGATGTGCAAGCTATGAGAATGTCGCCTGTGTTTCCTGAGAACCGTCTGCAGATTGGTTTGGAACTTACGCGAGGTCTTGGAGCTGGTGGTAACCCTGAGATGGGAATGAATGCTGCGAAAGAAAGCAGAGAGTCGATTGAAGAGGCGGTTTATGGAGCTGATATGGTCTTTGTTACAGCTGGAATGGGTGGTGGAACCGGCACAGGTGGTGCTCCGATTATTGCTGGTGTTGCAAAGTCAATGGGTATACTGACTGTTGGGATTGTCACGACCCCTTTTTCATTTGAAGGACGAAAGAGATCCATTCAAGCACAAGAAGGAATTACAGCTTTAAGAGATAATGTCGATACTCTAATAGTTATTCCAAATGACAAGCTATTAACTGCAGTTTCTCAATCTACCCCTGTAACGGAAGCATTCAATCTTGCTGATGATATTCTTCGACAGGGCGTTCGTGGCATATCTGATATTATTACAATCCCTGGGATGGTAAATGTTGATTTTGCTGATATTCGAGCTATAATGGCCAATGCTGGTTCTTCACTGATGGGGATAGGAACTGCAACTGGGAAAACAAGGGCAAGAGATGCTGCGTTAAATGCTATTCAGTCTCCTTTACTGGATATTGGTATAGAGAGGGCTACTGGAATTGTGTGGAACATAACTGGTGGGAGTGATCTGACTTTGTTTGAGGTAAATGCTGCTGCAGAAGTTATCTACGACCTCGTGGACCCTAGTGCTAATTTAATTTTTGGAGCAGTAATAGATCCTTCACTTACTGGTCATGTAAGCATAACATTAATTGCAACCGGATTCAAGCGTCAAGAGGAACATGAAGAGAAGCCACTACAGACTAGTCAGCTCACTCAGGGAGATACAACTGTCAATTTCAATCAGCGACCTTCCTCGTTCTCTGATGATGGTAGTTTGTTTGAGATACCTGATTTCTTAAAGAAGAAAGGACGCTCACGCTATCCTAGGGTTTAA

Protein sequence

>Msa0120330

MVTCVSTNFAHSNAINSEGVFNVVRGRKFPMRVNFMKIFDRKIGFLGSERKLGLVQVKFSTNSSNGSSYHSHDPFLHLHPEVSMLRGEASSTVNVPRKGSSSLGEDLSESLEDISSESNYSQAKIKVIGVGGGGSNAVNRMIESSMHGVEFWIVNTDVQAMRMSPVFPENRLQIGLELTRGLGAGGNPEMGMNAAKESRESIEEAVYGADMVFVTAGMGGGTGTGGAPIIAGVAKSMGILTVGIVTTPFSFEGRKRSIQAQEGITALRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGMVNVDFADIRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPSANLIFGAVIDPSLTGHVSITLIATGFKRQEEHEEKPLQTSQLTQGDTTVNFNQRPSSFSDDGSLFEIPDFLKKKGRSRYPRV*