AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532300 MtrunA17_Chr4g0005721 98.496 133 2 0 1 133 97 229 4.58e-95 273
Msa0532300 MtrunA17_Chr1g0174241 34.400 125 65 4 8 132 218 325 3.93e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532300 AT2G38025.1 67.391 138 39 2 1 132 96 233 1.15e-58 181
Msa0532300 AT2G38025.2 67.391 138 39 2 1 132 73 210 2.41e-58 180
Msa0532300 AT3G57810.2 33.071 127 68 3 7 133 195 304 2.34e-14 68.6
Msa0532300 AT3G57810.4 33.071 127 68 3 7 133 195 304 2.34e-14 68.6
Msa0532300 AT3G57810.3 33.071 127 68 3 7 133 195 304 2.34e-14 68.6

Find 57 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTAACTTATAATAATT+TGG 0.041709 4_1:+6318661 None:intergenic
GGATTGGGCAACCTGATTTC+TGG 0.156112 4_1:-6319510 Msa0532300:CDS
AATTGGGGTAATAGTCATTT+TGG 0.177304 4_1:-6318629 Msa0532300:three_prime_UTR
TTAGTTTGATAATTTATAAT+TGG 0.225266 4_1:-6318646 Msa0532300:three_prime_UTR
GTATGGAAGTGAATTTAAAA+AGG 0.264562 4_1:-6318939 Msa0532300:CDS
TCAAATGATAATTAGCCTAA+TGG 0.297630 4_1:+6318708 None:intergenic
TTCATTCCGATTGCCGAGTA+TGG 0.298574 4_1:-6318956 Msa0532300:CDS
TAGTTTGATAATTTATAATT+GGG 0.301501 4_1:-6318645 Msa0532300:three_prime_UTR
TCTGGTATGTACACAATAAT+TGG 0.313597 4_1:+6319133 None:intergenic
AAACTAACTTATAATAATTT+GGG 0.337402 4_1:+6318662 None:intergenic
GATTCTCCTCCCCAGAAATC+AGG 0.356950 4_1:+6319499 None:intergenic
GCAGTTACTGCAGGCGGATT+GGG 0.359521 4_1:-6319525 Msa0532300:intron
TGCAGTTACTGCAGGCGGAT+TGG 0.360734 4_1:-6319526 Msa0532300:intron
GATTGGGCAACCTGATTTCT+GGG 0.372109 4_1:-6319509 Msa0532300:CDS
ACATTAATTACCTTCCCATT+AGG 0.378095 4_1:-6318723 Msa0532300:three_prime_UTR
CATTATGACCTTCTGTTATG+AGG 0.384606 4_1:-6318872 Msa0532300:exon
CAGAAGTGAAACTCTGAGTA+TGG 0.384691 4_1:+6318785 None:intergenic
CAAATGATAATTAGCCTAAT+GGG 0.384846 4_1:+6318709 None:intergenic
CTCATAACAGAAGGTCATAA+TGG 0.393100 4_1:+6318873 None:intergenic
AGAGGCAGTGGTCGGGGATC+TGG 0.401931 4_1:-6318980 Msa0532300:CDS
CGGCTACCCATCACACATTC+GGG 0.413956 4_1:+6318604 None:intergenic
GCGGCTACCCATCACACATT+CGG 0.420843 4_1:+6318603 None:intergenic
GGGAGGAGAATCAGAACTAT+TGG 0.442300 4_1:-6319488 Msa0532300:intron
TTTAAATTCACTTCCATACT+CGG 0.461333 4_1:+6318943 None:intergenic
ATCAACCGTGACGGCAATGA+TGG 0.474613 4_1:+6319653 None:intergenic
TTAAGGCATACCTCATGCTC+TGG 0.476452 4_1:+6319115 None:intergenic
GCAGCATAGAGGCAGTGGTC+GGG 0.477212 4_1:-6318987 Msa0532300:intron
TCTAAAACACACCGTTGTAA+AGG 0.503080 4_1:+6319627 None:intergenic
TCACTTCCATACTCGGCAAT+CGG 0.507697 4_1:+6318950 None:intergenic
CAGCATAGAGGCAGTGGTCG+GGG 0.532591 4_1:-6318986 Msa0532300:CDS
GAAGCTATATGTGAAAATGT+AGG 0.546789 4_1:-6319699 Msa0532300:CDS
TAACACAGATGAATTAAGAA+TGG 0.549472 4_1:-6319730 Msa0532300:intron
AGTTTGATAATTTATAATTG+GGG 0.550558 4_1:-6318644 Msa0532300:three_prime_UTR
TTTGGTACCCGAATGTGTGA+TGG 0.567959 4_1:-6318611 Msa0532300:three_prime_UTR
GGGCAACCTGATTTCTGGGG+AGG 0.583375 4_1:-6319505 Msa0532300:CDS
AGGAATTGTATCGGCGAAGG+AGG 0.586453 4_1:-6318852 Msa0532300:three_prime_UTR
TGTGAGAGTATCTACGCTAG+TGG 0.587204 4_1:+6318743 None:intergenic
AAAATGCAGCATAGAGGCAG+TGG 0.587658 4_1:-6318992 Msa0532300:intron
AGAAGCCATCATTGCCGTCA+CGG 0.595204 4_1:-6319658 Msa0532300:CDS
TTGGTACCCGAATGTGTGAT+GGG 0.600266 4_1:-6318610 Msa0532300:three_prime_UTR
ATGAGGAATTGTATCGGCGA+AGG 0.604741 4_1:-6318855 Msa0532300:exon
TCTACGCTAGTGGGAAAACA+AGG 0.604879 4_1:+6318753 None:intergenic
GATTCATTGATGGAATATTG+CGG 0.605902 4_1:+6318584 None:intergenic
TGCAGCATAGAGGCAGTGGT+CGG 0.616152 4_1:-6318988 Msa0532300:intron
TTTGCTGCAGTTACTGCAGG+CGG 0.617614 4_1:-6319531 Msa0532300:intron
ATACAATTCCTCATAACAGA+AGG 0.623406 4_1:+6318864 None:intergenic
TCTGTTATGAGGAATTGTAT+CGG 0.624608 4_1:-6318861 Msa0532300:exon
CGCGAGGAGAGAGAAAATGC+AGG 0.629042 4_1:-6319995 Msa0532300:intron
GTGAGAGTATCTACGCTAGT+GGG 0.632214 4_1:+6318744 None:intergenic
TGTGTACATACCAGAGCATG+AGG 0.636499 4_1:-6319125 Msa0532300:intron
TGATAATTAGCCTAATGGGA+AGG 0.650064 4_1:+6318713 None:intergenic
ATTGGGCAACCTGATTTCTG+GGG 0.653227 4_1:-6319508 Msa0532300:CDS
TAAAGGCTCATCAACCGTGA+CGG 0.660842 4_1:+6319644 None:intergenic
AATGGCTCTTAACCAACGCG+AGG 0.698050 4_1:-6320011 Msa0532300:CDS
CGGTTGATGAGCCTTTACAA+CGG 0.717115 4_1:-6319638 Msa0532300:intron
GCTGTGAGGCTATTGTTCAG+CGG 0.720718 4_1:-6318902 Msa0532300:CDS
GTTCTAGCAGAAAAGCTGTG+AGG 0.757620 4_1:-6318916 Msa0532300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTAACTTATAATAATTT+GGG + chr4_1:6319764-6319783 None:intergenic 10.0%
!!! TTAGTTTGATAATTTATAAT+TGG - chr4_1:6319777-6319796 Msa0532300:intron 10.0%
!!! TAGTTTGATAATTTATAATT+GGG - chr4_1:6319778-6319797 Msa0532300:intron 10.0%
!! AAACTAACTTATAATAATTT+GGG + chr4_1:6319764-6319783 None:intergenic 10.0%
!!! TTAGTTTGATAATTTATAAT+TGG - chr4_1:6319777-6319796 Msa0532300:intron 10.0%
!!! TAGTTTGATAATTTATAATT+GGG - chr4_1:6319778-6319797 Msa0532300:intron 10.0%
!!! AAACTAAGTATTGTTTTTTA+AGG + chr4_1:6319328-6319347 None:intergenic 15.0%
!! CAAACTAACTTATAATAATT+TGG + chr4_1:6319765-6319784 None:intergenic 15.0%
!!! AGTTTGATAATTTATAATTG+GGG - chr4_1:6319779-6319798 Msa0532300:intron 15.0%
!!! TTAAAATTTTGATTCATTGA+TGG + chr4_1:6319852-6319871 None:intergenic 15.0%
!!! AAACTAAGTATTGTTTTTTA+AGG + chr4_1:6319328-6319347 None:intergenic 15.0%
!! CAAACTAACTTATAATAATT+TGG + chr4_1:6319765-6319784 None:intergenic 15.0%
!!! AGTTTGATAATTTATAATTG+GGG - chr4_1:6319779-6319798 Msa0532300:intron 15.0%
!!! TTAAAATTTTGATTCATTGA+TGG + chr4_1:6319852-6319871 None:intergenic 15.0%
!! GATATACTAGCAATAAAATA+TGG - chr4_1:6318457-6318476 Msa0532300:intron 20.0%
!!! AGATCTTAATTTTCTGTTAA+TGG + chr4_1:6318824-6318843 None:intergenic 20.0%
!! TATGTATTTAATCCAATGAT+TGG - chr4_1:6318860-6318879 Msa0532300:exon 20.0%
!! ACTAAATAGAGTTTCTTATT+TGG - chr4_1:6319008-6319027 Msa0532300:intron 20.0%
!!! GGTCTATCTAATATTTTATA+AGG - chr4_1:6319356-6319375 Msa0532300:intron 20.0%
!! TATGGAAGTGAATTTAAAAA+GGG - chr4_1:6319485-6319504 Msa0532300:intron 20.0%
!! ATAAGTACTTATTGTCATAT+CGG + chr4_1:6319967-6319986 None:intergenic 20.0%
!! TATGACAATAAGTACTTATA+TGG - chr4_1:6319968-6319987 Msa0532300:intron 20.0%
!! GATATACTAGCAATAAAATA+TGG - chr4_1:6318457-6318476 Msa0532300:intron 20.0%
!!! AGATCTTAATTTTCTGTTAA+TGG + chr4_1:6318824-6318843 None:intergenic 20.0%
!! TATGTATTTAATCCAATGAT+TGG - chr4_1:6318860-6318879 Msa0532300:exon 20.0%
!! ACTAAATAGAGTTTCTTATT+TGG - chr4_1:6319008-6319027 Msa0532300:intron 20.0%
!!! GGTCTATCTAATATTTTATA+AGG - chr4_1:6319356-6319375 Msa0532300:intron 20.0%
!! TATGGAAGTGAATTTAAAAA+GGG - chr4_1:6319485-6319504 Msa0532300:intron 20.0%
!! ATAAGTACTTATTGTCATAT+CGG + chr4_1:6319967-6319986 None:intergenic 20.0%
!! TATGACAATAAGTACTTATA+TGG - chr4_1:6319968-6319987 Msa0532300:intron 20.0%
! TGAAAGCAAAACAAACAAAA+GGG + chr4_1:6318492-6318511 None:intergenic 25.0%
! TGGGAAAAATAAAGGTTATA+AGG + chr4_1:6318627-6318646 None:intergenic 25.0%
! AAAGTGAATGGGAAAAATAA+AGG + chr4_1:6318635-6318654 None:intergenic 25.0%
! GAAATGAAAACAAAGTGAAT+GGG + chr4_1:6318646-6318665 None:intergenic 25.0%
! TAACACAGATGAATTAAGAA+TGG - chr4_1:6318693-6318712 Msa0532300:three_prime_UTR 25.0%
! AACAGAAAATTAAGATCTTG+AGG - chr4_1:6318826-6318845 Msa0532300:three_prime_UTR 25.0%
! AAAATAACACATCCAATCAT+TGG + chr4_1:6318875-6318894 None:intergenic 25.0%
!! CAATACTTAGTTTGATCATT+TGG - chr4_1:6319335-6319354 Msa0532300:intron 25.0%
! TTTAAATTCACTTCCATACT+CGG + chr4_1:6319483-6319502 None:intergenic 25.0%
! GTATGGAAGTGAATTTAAAA+AGG - chr4_1:6319484-6319503 Msa0532300:intron 25.0%
!! CAAATGATAATTAGCCTAAT+GGG + chr4_1:6319717-6319736 None:intergenic 25.0%
!! TCAAATGATAATTAGCCTAA+TGG + chr4_1:6319718-6319737 None:intergenic 25.0%
! TGAAAGCAAAACAAACAAAA+GGG + chr4_1:6318492-6318511 None:intergenic 25.0%
! TGGGAAAAATAAAGGTTATA+AGG + chr4_1:6318627-6318646 None:intergenic 25.0%
! AAAGTGAATGGGAAAAATAA+AGG + chr4_1:6318635-6318654 None:intergenic 25.0%
! GAAATGAAAACAAAGTGAAT+GGG + chr4_1:6318646-6318665 None:intergenic 25.0%
! TAACACAGATGAATTAAGAA+TGG - chr4_1:6318693-6318712 Msa0532300:three_prime_UTR 25.0%
! AACAGAAAATTAAGATCTTG+AGG - chr4_1:6318826-6318845 Msa0532300:three_prime_UTR 25.0%
! AAAATAACACATCCAATCAT+TGG + chr4_1:6318875-6318894 None:intergenic 25.0%
!! CAATACTTAGTTTGATCATT+TGG - chr4_1:6319335-6319354 Msa0532300:intron 25.0%
! TTTAAATTCACTTCCATACT+CGG + chr4_1:6319483-6319502 None:intergenic 25.0%
! GTATGGAAGTGAATTTAAAA+AGG - chr4_1:6319484-6319503 Msa0532300:intron 25.0%
!! CAAATGATAATTAGCCTAAT+GGG + chr4_1:6319717-6319736 None:intergenic 25.0%
!! TCAAATGATAATTAGCCTAA+TGG + chr4_1:6319718-6319737 None:intergenic 25.0%
GTGAAAGCAAAACAAACAAA+AGG + chr4_1:6318493-6318512 None:intergenic 30.0%
!!! GTTTGTTTTGCTTTCACTTA+AGG - chr4_1:6318496-6318515 Msa0532300:three_prime_UTR 30.0%
GGAAATGAAAACAAAGTGAA+TGG + chr4_1:6318647-6318666 None:intergenic 30.0%
GAAGCTATATGTGAAAATGT+AGG - chr4_1:6318724-6318743 Msa0532300:three_prime_UTR 30.0%
AGAAACTCTATTTAGTCCTT+AGG + chr4_1:6319004-6319023 None:intergenic 30.0%
!!! CGGTCTTTTAAAATTCACAT+CGG + chr4_1:6319096-6319115 None:intergenic 30.0%
TCTGGTATGTACACAATAAT+TGG + chr4_1:6319293-6319312 None:intergenic 30.0%
AAACTAAAAATGCAGCATAG+AGG - chr4_1:6319425-6319444 Msa0532300:intron 30.0%
ATACAATTCCTCATAACAGA+AGG + chr4_1:6319562-6319581 None:intergenic 30.0%
TCTGTTATGAGGAATTGTAT+CGG - chr4_1:6319562-6319581 Msa0532300:intron 30.0%
ACATTAATTACCTTCCCATT+AGG - chr4_1:6319700-6319719 Msa0532300:CDS 30.0%
! AATTGGGGTAATAGTCATTT+TGG - chr4_1:6319794-6319813 Msa0532300:intron 30.0%
GATTCATTGATGGAATATTG+CGG + chr4_1:6319842-6319861 None:intergenic 30.0%
GTGAAAGCAAAACAAACAAA+AGG + chr4_1:6318493-6318512 None:intergenic 30.0%
!!! GTTTGTTTTGCTTTCACTTA+AGG - chr4_1:6318496-6318515 Msa0532300:three_prime_UTR 30.0%
GGAAATGAAAACAAAGTGAA+TGG + chr4_1:6318647-6318666 None:intergenic 30.0%
GAAGCTATATGTGAAAATGT+AGG - chr4_1:6318724-6318743 Msa0532300:three_prime_UTR 30.0%
AGAAACTCTATTTAGTCCTT+AGG + chr4_1:6319004-6319023 None:intergenic 30.0%
!!! CGGTCTTTTAAAATTCACAT+CGG + chr4_1:6319096-6319115 None:intergenic 30.0%
TCTGGTATGTACACAATAAT+TGG + chr4_1:6319293-6319312 None:intergenic 30.0%
AAACTAAAAATGCAGCATAG+AGG - chr4_1:6319425-6319444 Msa0532300:intron 30.0%
ATACAATTCCTCATAACAGA+AGG + chr4_1:6319562-6319581 None:intergenic 30.0%
TCTGTTATGAGGAATTGTAT+CGG - chr4_1:6319562-6319581 Msa0532300:intron 30.0%
ACATTAATTACCTTCCCATT+AGG - chr4_1:6319700-6319719 Msa0532300:CDS 30.0%
! AATTGGGGTAATAGTCATTT+TGG - chr4_1:6319794-6319813 Msa0532300:intron 30.0%
GATTCATTGATGGAATATTG+CGG + chr4_1:6319842-6319861 None:intergenic 30.0%
TCTCAGATCAATAGTTGAAG+CGG + chr4_1:6318562-6318581 None:intergenic 35.0%
CGCAAGTCAAAACATTGAAA+AGG + chr4_1:6318668-6318687 None:intergenic 35.0%
! TCTAAAACACACCGTTGTAA+AGG + chr4_1:6318799-6318818 None:intergenic 35.0%
AGGAGATAATAATGCAAGCA+TGG + chr4_1:6318984-6319003 None:intergenic 35.0%
GCTTGCATTATTATCTCCTA+AGG - chr4_1:6318985-6319004 Msa0532300:CDS 35.0%
!! GTTTCATCTGTTGACTCATT+CGG + chr4_1:6319116-6319135 None:intergenic 35.0%
! GACATGAATTTTCATTCCCA+GGG + chr4_1:6319221-6319240 None:intergenic 35.0%
AAAGAATATGGACATTGGTC+GGG + chr4_1:6319243-6319262 None:intergenic 35.0%
GAAAGAATATGGACATTGGT+CGG + chr4_1:6319244-6319263 None:intergenic 35.0%
ACCAATGTCCATATTCTTTC+AGG - chr4_1:6319244-6319263 Msa0532300:intron 35.0%
ACCTGAAAGAATATGGACAT+TGG + chr4_1:6319248-6319267 None:intergenic 35.0%
TGACAGTACCTGAAAGAATA+TGG + chr4_1:6319255-6319274 None:intergenic 35.0%
CTCATAACAGAAGGTCATAA+TGG + chr4_1:6319553-6319572 None:intergenic 35.0%
CATTATGACCTTCTGTTATG+AGG - chr4_1:6319551-6319570 Msa0532300:intron 35.0%
! TGATAATTAGCCTAATGGGA+AGG + chr4_1:6319713-6319732 None:intergenic 35.0%
TCTCAGATCAATAGTTGAAG+CGG + chr4_1:6318562-6318581 None:intergenic 35.0%
CGCAAGTCAAAACATTGAAA+AGG + chr4_1:6318668-6318687 None:intergenic 35.0%
! TCTAAAACACACCGTTGTAA+AGG + chr4_1:6318799-6318818 None:intergenic 35.0%
AGGAGATAATAATGCAAGCA+TGG + chr4_1:6318984-6319003 None:intergenic 35.0%
GCTTGCATTATTATCTCCTA+AGG - chr4_1:6318985-6319004 Msa0532300:CDS 35.0%
!! GTTTCATCTGTTGACTCATT+CGG + chr4_1:6319116-6319135 None:intergenic 35.0%
! GACATGAATTTTCATTCCCA+GGG + chr4_1:6319221-6319240 None:intergenic 35.0%
AAAGAATATGGACATTGGTC+GGG + chr4_1:6319243-6319262 None:intergenic 35.0%
GAAAGAATATGGACATTGGT+CGG + chr4_1:6319244-6319263 None:intergenic 35.0%
ACCAATGTCCATATTCTTTC+AGG - chr4_1:6319244-6319263 Msa0532300:intron 35.0%
ACCTGAAAGAATATGGACAT+TGG + chr4_1:6319248-6319267 None:intergenic 35.0%
TGACAGTACCTGAAAGAATA+TGG + chr4_1:6319255-6319274 None:intergenic 35.0%
CTCATAACAGAAGGTCATAA+TGG + chr4_1:6319553-6319572 None:intergenic 35.0%
CATTATGACCTTCTGTTATG+AGG - chr4_1:6319551-6319570 Msa0532300:intron 35.0%
! TGATAATTAGCCTAATGGGA+AGG + chr4_1:6319713-6319732 None:intergenic 35.0%
! TATTTTGCTGCAGTTACTGC+AGG - chr4_1:6318889-6318908 Msa0532300:CDS 40.0%
TGAACTCATGTGAAAACCCT+GGG - chr4_1:6319202-6319221 Msa0532300:intron 40.0%
! GGACATGAATTTTCATTCCC+AGG + chr4_1:6319222-6319241 None:intergenic 40.0%
CAGAAGTGAAACTCTGAGTA+TGG + chr4_1:6319641-6319660 None:intergenic 40.0%
! TATTTTGCTGCAGTTACTGC+AGG - chr4_1:6318889-6318908 Msa0532300:CDS 40.0%
TGAACTCATGTGAAAACCCT+GGG - chr4_1:6319202-6319221 Msa0532300:intron 40.0%
! GGACATGAATTTTCATTCCC+AGG + chr4_1:6319222-6319241 None:intergenic 40.0%
CAGAAGTGAAACTCTGAGTA+TGG + chr4_1:6319641-6319660 None:intergenic 40.0%
AATGGCTCACAACAAGGGAA+TGG - chr4_1:6318394-6318413 Msa0532300:three_prime_UTR 45.0%
TAAAGGCTCATCAACCGTGA+CGG + chr4_1:6318782-6318801 None:intergenic 45.0%
!! CGGTTGATGAGCCTTTACAA+CGG - chr4_1:6318785-6318804 Msa0532300:three_prime_UTR 45.0%
GATTGGGCAACCTGATTTCT+GGG - chr4_1:6318914-6318933 Msa0532300:CDS 45.0%
ATTGGGCAACCTGATTTCTG+GGG - chr4_1:6318915-6318934 Msa0532300:CDS 45.0%
GGGAGGAGAATCAGAACTAT+TGG - chr4_1:6318935-6318954 Msa0532300:CDS 45.0%
CTGAACTCATGTGAAAACCC+TGG - chr4_1:6319201-6319220 Msa0532300:intron 45.0%
TGTGTACATACCAGAGCATG+AGG - chr4_1:6319298-6319317 Msa0532300:intron 45.0%
TTAAGGCATACCTCATGCTC+TGG + chr4_1:6319311-6319330 None:intergenic 45.0%
AAAATGCAGCATAGAGGCAG+TGG - chr4_1:6319431-6319450 Msa0532300:intron 45.0%
TTCATTCCGATTGCCGAGTA+TGG - chr4_1:6319467-6319486 Msa0532300:intron 45.0%
TCACTTCCATACTCGGCAAT+CGG + chr4_1:6319476-6319495 None:intergenic 45.0%
GTTCTAGCAGAAAAGCTGTG+AGG - chr4_1:6319507-6319526 Msa0532300:CDS 45.0%
! ATGAGGAATTGTATCGGCGA+AGG - chr4_1:6319568-6319587 Msa0532300:intron 45.0%
TCTACGCTAGTGGGAAAACA+AGG + chr4_1:6319673-6319692 None:intergenic 45.0%
!! GTGAGAGTATCTACGCTAGT+GGG + chr4_1:6319682-6319701 None:intergenic 45.0%
!! TGTGAGAGTATCTACGCTAG+TGG + chr4_1:6319683-6319702 None:intergenic 45.0%
TTTGGTACCCGAATGTGTGA+TGG - chr4_1:6319812-6319831 Msa0532300:intron 45.0%
TTGGTACCCGAATGTGTGAT+GGG - chr4_1:6319813-6319832 Msa0532300:intron 45.0%
AATGGCTCACAACAAGGGAA+TGG - chr4_1:6318394-6318413 Msa0532300:three_prime_UTR 45.0%
TAAAGGCTCATCAACCGTGA+CGG + chr4_1:6318782-6318801 None:intergenic 45.0%
!! CGGTTGATGAGCCTTTACAA+CGG - chr4_1:6318785-6318804 Msa0532300:three_prime_UTR 45.0%
GATTGGGCAACCTGATTTCT+GGG - chr4_1:6318914-6318933 Msa0532300:CDS 45.0%
ATTGGGCAACCTGATTTCTG+GGG - chr4_1:6318915-6318934 Msa0532300:CDS 45.0%
GGGAGGAGAATCAGAACTAT+TGG - chr4_1:6318935-6318954 Msa0532300:CDS 45.0%
CTGAACTCATGTGAAAACCC+TGG - chr4_1:6319201-6319220 Msa0532300:intron 45.0%
TGTGTACATACCAGAGCATG+AGG - chr4_1:6319298-6319317 Msa0532300:intron 45.0%
TTAAGGCATACCTCATGCTC+TGG + chr4_1:6319311-6319330 None:intergenic 45.0%
AAAATGCAGCATAGAGGCAG+TGG - chr4_1:6319431-6319450 Msa0532300:intron 45.0%
TTCATTCCGATTGCCGAGTA+TGG - chr4_1:6319467-6319486 Msa0532300:intron 45.0%
TCACTTCCATACTCGGCAAT+CGG + chr4_1:6319476-6319495 None:intergenic 45.0%
GTTCTAGCAGAAAAGCTGTG+AGG - chr4_1:6319507-6319526 Msa0532300:CDS 45.0%
! ATGAGGAATTGTATCGGCGA+AGG - chr4_1:6319568-6319587 Msa0532300:intron 45.0%
TCTACGCTAGTGGGAAAACA+AGG + chr4_1:6319673-6319692 None:intergenic 45.0%
!! GTGAGAGTATCTACGCTAGT+GGG + chr4_1:6319682-6319701 None:intergenic 45.0%
!! TGTGAGAGTATCTACGCTAG+TGG + chr4_1:6319683-6319702 None:intergenic 45.0%
TTTGGTACCCGAATGTGTGA+TGG - chr4_1:6319812-6319831 Msa0532300:intron 45.0%
TTGGTACCCGAATGTGTGAT+GGG - chr4_1:6319813-6319832 Msa0532300:intron 45.0%
AATGGCTCTTAACCAACGCG+AGG - chr4_1:6318412-6318431 Msa0532300:three_prime_UTR 50.0%
! CATTTTCTCTCTCCTCGCGT+TGG + chr4_1:6318427-6318446 None:intergenic 50.0%
AGAAGCCATCATTGCCGTCA+CGG - chr4_1:6318765-6318784 Msa0532300:three_prime_UTR 50.0%
ATCAACCGTGACGGCAATGA+TGG + chr4_1:6318773-6318792 None:intergenic 50.0%
TTTGCTGCAGTTACTGCAGG+CGG - chr4_1:6318892-6318911 Msa0532300:CDS 50.0%
GGATTGGGCAACCTGATTTC+TGG - chr4_1:6318913-6318932 Msa0532300:CDS 50.0%
GATTCTCCTCCCCAGAAATC+AGG + chr4_1:6318927-6318946 None:intergenic 50.0%
GCTGTGAGGCTATTGTTCAG+CGG - chr4_1:6319521-6319540 Msa0532300:CDS 50.0%
! AGGAATTGTATCGGCGAAGG+AGG - chr4_1:6319571-6319590 Msa0532300:intron 50.0%
AATGGCTCTTAACCAACGCG+AGG - chr4_1:6318412-6318431 Msa0532300:three_prime_UTR 50.0%
! CATTTTCTCTCTCCTCGCGT+TGG + chr4_1:6318427-6318446 None:intergenic 50.0%
AGAAGCCATCATTGCCGTCA+CGG - chr4_1:6318765-6318784 Msa0532300:three_prime_UTR 50.0%
ATCAACCGTGACGGCAATGA+TGG + chr4_1:6318773-6318792 None:intergenic 50.0%
TTTGCTGCAGTTACTGCAGG+CGG - chr4_1:6318892-6318911 Msa0532300:CDS 50.0%
GGATTGGGCAACCTGATTTC+TGG - chr4_1:6318913-6318932 Msa0532300:CDS 50.0%
GATTCTCCTCCCCAGAAATC+AGG + chr4_1:6318927-6318946 None:intergenic 50.0%
GCTGTGAGGCTATTGTTCAG+CGG - chr4_1:6319521-6319540 Msa0532300:CDS 50.0%
! AGGAATTGTATCGGCGAAGG+AGG - chr4_1:6319571-6319590 Msa0532300:intron 50.0%
CGCGAGGAGAGAGAAAATGC+AGG - chr4_1:6318428-6318447 Msa0532300:three_prime_UTR 55.0%
TGCAGTTACTGCAGGCGGAT+TGG - chr4_1:6318897-6318916 Msa0532300:CDS 55.0%
! GCAGTTACTGCAGGCGGATT+GGG - chr4_1:6318898-6318917 Msa0532300:CDS 55.0%
TGCAGCATAGAGGCAGTGGT+CGG - chr4_1:6319435-6319454 Msa0532300:intron 55.0%
CGGCTACCCATCACACATTC+GGG + chr4_1:6319822-6319841 None:intergenic 55.0%
GCGGCTACCCATCACACATT+CGG + chr4_1:6319823-6319842 None:intergenic 55.0%
CGCGAGGAGAGAGAAAATGC+AGG - chr4_1:6318428-6318447 Msa0532300:three_prime_UTR 55.0%
TGCAGTTACTGCAGGCGGAT+TGG - chr4_1:6318897-6318916 Msa0532300:CDS 55.0%
! GCAGTTACTGCAGGCGGATT+GGG - chr4_1:6318898-6318917 Msa0532300:CDS 55.0%
TGCAGCATAGAGGCAGTGGT+CGG - chr4_1:6319435-6319454 Msa0532300:intron 55.0%
CGGCTACCCATCACACATTC+GGG + chr4_1:6319822-6319841 None:intergenic 55.0%
GCGGCTACCCATCACACATT+CGG + chr4_1:6319823-6319842 None:intergenic 55.0%
! GGGCAACCTGATTTCTGGGG+AGG - chr4_1:6318918-6318937 Msa0532300:CDS 60.0%
GCAGCATAGAGGCAGTGGTC+GGG - chr4_1:6319436-6319455 Msa0532300:intron 60.0%
CAGCATAGAGGCAGTGGTCG+GGG - chr4_1:6319437-6319456 Msa0532300:intron 60.0%
! GGGCAACCTGATTTCTGGGG+AGG - chr4_1:6318918-6318937 Msa0532300:CDS 60.0%
GCAGCATAGAGGCAGTGGTC+GGG - chr4_1:6319436-6319455 Msa0532300:intron 60.0%
CAGCATAGAGGCAGTGGTCG+GGG - chr4_1:6319437-6319456 Msa0532300:intron 60.0%
AGAGGCAGTGGTCGGGGATC+TGG - chr4_1:6319443-6319462 Msa0532300:intron 65.0%
AGAGGCAGTGGTCGGGGATC+TGG - chr4_1:6319443-6319462 Msa0532300:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 6318393 6320052 6318393 ID=Msa0532300;Name=Msa0532300
chr4_1 mRNA 6318393 6320052 6318393 ID=Msa0532300-mRNA-1;Parent=Msa0532300;Name=Msa0532300-mRNA-1;_AED=0.21;_eAED=0.21;_QI=2|1|1|1|0.8|0.66|6|453|133
chr4_1 exon 6318393 6318450 6318393 ID=Msa0532300-mRNA-1:exon:2274;Parent=Msa0532300-mRNA-1
chr4_1 exon 6318479 6319005 6318479 ID=Msa0532300-mRNA-1:exon:2273;Parent=Msa0532300-mRNA-1
chr4_1 exon 6319126 6319179 6319126 ID=Msa0532300-mRNA-1:exon:2272;Parent=Msa0532300-mRNA-1
chr4_1 exon 6319489 6319543 6319489 ID=Msa0532300-mRNA-1:exon:2271;Parent=Msa0532300-mRNA-1
chr4_1 exon 6319639 6319744 6319639 ID=Msa0532300-mRNA-1:exon:2270;Parent=Msa0532300-mRNA-1
chr4_1 exon 6319996 6320052 6319996 ID=Msa0532300-mRNA-1:exon:2269;Parent=Msa0532300-mRNA-1
chr4_1 five_prime_UTR 6320051 6320052 6320051 ID=Msa0532300-mRNA-1:five_prime_utr;Parent=Msa0532300-mRNA-1
chr4_1 CDS 6319996 6320050 6319996 ID=Msa0532300-mRNA-1:cds;Parent=Msa0532300-mRNA-1
chr4_1 CDS 6319639 6319744 6319639 ID=Msa0532300-mRNA-1:cds;Parent=Msa0532300-mRNA-1
chr4_1 CDS 6319489 6319543 6319489 ID=Msa0532300-mRNA-1:cds;Parent=Msa0532300-mRNA-1
chr4_1 CDS 6319126 6319179 6319126 ID=Msa0532300-mRNA-1:cds;Parent=Msa0532300-mRNA-1
chr4_1 CDS 6318874 6319005 6318874 ID=Msa0532300-mRNA-1:cds;Parent=Msa0532300-mRNA-1
chr4_1 three_prime_UTR 6318479 6318873 6318479 ID=Msa0532300-mRNA-1:three_prime_utr;Parent=Msa0532300-mRNA-1
chr4_1 three_prime_UTR 6318393 6318450 6318393 ID=Msa0532300-mRNA-1:three_prime_utr;Parent=Msa0532300-mRNA-1
Gene Sequence

>Msa0532300

ATGGCTCACAACAAGGGAATGGCTCTTAACCAACGCGAGGAGAGAGAAAATGCAGATGAATTAAGAATGGCAGTCAAAGAAGCTATATGTGAAAATGTAGGAGATCGCAAGTTATATGAAGAAGCCATCATTGCCGTCACGGTTGATGAGCCTTTACAACGTTACTGCAGGCGGATTGGGCAACCTGATTTCTGGGGAGGAGAATCAGAACTATTGGTACTGTCAAAGTTATGTAAGCAGCCAATTATTGTGTACATACCAGAGCATGAGCATAGAGGCAGTGGTCGGGGATCTGGTTTCATTCCGATTGCCGAGTATGGAAGTGAATTTAAAAAGGGTTCTAGCAGAAAAGCTGTGAGGCTATTGTTCAGCGGTAAAAACCATTATGACCTTCTGTTATGA

Protein sequence

>Msa0532300

MAHNKGMALNQREERENADELRMAVKEAICENVGDRKLYEEAIIAVTVDEPLQRYCRRIGQPDFWGGESELLVLSKLCKQPIIVYIPEHEHRGSGRGSGFIPIAEYGSEFKKGSSRKAVRLLFSGKNHYDLLL*