AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0824680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824680 MtrunA17_Chr5g0445771 78.125 512 47 8 1 455 1 504 0.0 715
Msa0824680 MtrunA17_Chr5g0446181 53.040 477 94 17 1 455 3 371 2.79e-118 350
Msa0824680 MtrunA17_Chr5g0445881 49.687 479 136 11 1 422 3 433 4.62e-110 333
Msa0824680 MtrunA17_Chr5g0445831 53.814 236 53 7 1 208 3 210 6.18e-61 204
Msa0824680 MtrunA17_Chr5g0445831 34.700 317 123 10 61 334 141 416 2.42e-25 107
Msa0824680 MtrunA17_Chr5g0445871 50.246 203 68 4 220 422 1 170 7.56e-46 158
Msa0824680 MtrunA17_Chr5g0445861 49.000 200 71 4 1 169 3 202 3.97e-42 154
Msa0824680 MtrunA17_Chr5g0445861 39.394 231 91 4 125 326 214 424 1.14e-26 111
Msa0824680 MtrunA17_Chr5g0445811 36.220 381 79 13 1 325 3 275 7.06e-41 147
Msa0824680 MtrunA17_Chr5g0445961 38.636 264 121 7 2 239 4 252 7.89e-29 119
Msa0824680 MtrunA17_Chr5g0445961 39.565 230 111 7 53 259 177 401 2.57e-24 105
Msa0824680 MtrunA17_Chr1g0185261 40.000 200 77 5 66 247 1 175 1.89e-22 95.5
Msa0824680 MtrunA17_Chr5g0446171 39.227 181 73 5 2 182 4 147 2.37e-22 95.5
Msa0824680 MtrunA17_Chr5g0445821 57.798 109 36 3 351 455 5 107 4.52e-20 85.1
Msa0824680 MtrunA17_Chr5g0445801 55.556 72 32 0 351 422 5 76 3.08e-19 83.2
Msa0824680 MtrunA17_Chr5g0413371 41.781 146 61 3 21 161 3 129 3.37e-18 87.4
Msa0824680 MtrunA17_Chr5g0446191 43.972 141 59 5 28 159 20 149 4.14e-16 80.9
Msa0824680 MtrunA17_Chr5g0446231 41.667 144 64 5 25 159 2 134 3.59e-15 77.8
Msa0824680 MtrunA17_Chr5g0445851 67.143 70 21 1 351 420 5 72 4.48e-12 62.8
Msa0824680 MtrunA17_Chr5g0434151 48.438 64 28 1 343 406 18 76 4.15e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 92 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTATTATCTAAGGTAAA+TGG 0.159605 5_3:+64112496 Msa0824680:three_prime_UTR
TAATGATCATCTTGATTTAT+TGG 0.203669 5_3:-64110625 None:intergenic
CTTGTTAGGCTTTGTGGAAT+TGG 0.253558 5_3:-64106606 None:intergenic
AACAAAGATTGTTGAATTAG+AGG 0.277435 5_3:+64107045 Msa0824680:CDS
TTCAAGCTTGTTAGGCTTTG+TGG 0.304052 5_3:-64106612 None:intergenic
TGGTGACCCAGGTTCAGTTT+TGG 0.318302 5_3:-64106576 None:intergenic
TCGGGCTTAGATGCCTCTAT+TGG 0.322418 5_3:+64110439 Msa0824680:CDS
TGATAGTGTTGAAGCTGTTT+TGG 0.323247 5_3:+64106694 Msa0824680:intron
CATTTAAAGAAAGCTAGTTT+TGG 0.330754 5_3:+64112248 Msa0824680:CDS
GGAGACAGTAAAGAAGAATT+TGG 0.339017 5_3:+64110273 Msa0824680:intron
AGGAAAACGGTTGAGATTAC+AGG 0.365163 5_3:+64111527 Msa0824680:CDS
AGTAGAAGTGGAGGTGGAAG+TGG 0.367803 5_3:-64112393 None:intergenic
GTCTATTCATGATCTTGTTA+TGG 0.368869 5_3:+64106640 Msa0824680:CDS
AGAAAAGAAGAACAATGAAT+TGG 0.369477 5_3:+64106958 Msa0824680:CDS
GTTGCAACAAAGCTTTGAAA+TGG 0.369757 5_3:+64106754 Msa0824680:CDS
CAGGATTGAACTATTATCTA+AGG 0.378675 5_3:+64112489 Msa0824680:three_prime_UTR
GAGAGGAAATTTGTGAGAAA+GGG 0.390161 5_3:+64106852 Msa0824680:CDS
GAGGAATGAAAGCAGCAAAT+TGG 0.390389 5_3:+64110312 Msa0824680:CDS
AACTATTATCTAAGGTAAAT+GGG 0.392903 5_3:+64112497 Msa0824680:three_prime_UTR
CAAGATGATCATTACACTCT+TGG 0.393009 5_3:+64110634 Msa0824680:CDS
CTCATTGTTGCCACCAATAG+AGG 0.396366 5_3:-64110452 None:intergenic
GGAGGAAGATGACATTGAAT+TGG 0.407668 5_3:+64107105 Msa0824680:CDS
AGAGAGGAAATTTGTGAGAA+AGG 0.411748 5_3:+64106851 Msa0824680:CDS
AGCCGGTGGAAGAGTGAAAC+TGG 0.434903 5_3:+64112154 Msa0824680:intron
GACTTGTCTTCAAGCTTGTT+AGG 0.440389 5_3:-64106620 None:intergenic
CGCTAGAAAGCCCAGGAAAA+CGG 0.451250 5_3:+64111514 Msa0824680:CDS
TCATCTTGATTTATTGGTAA+AGG 0.453360 5_3:-64110619 None:intergenic
GCCAGTGCTGCTGATGAACT+TGG 0.454339 5_3:-64112293 None:intergenic
GCCAAGTTCATCAGCAGCAC+TGG 0.459749 5_3:+64112292 Msa0824680:CDS
TTCCAGTTTCACTCTTCCAC+CGG 0.474751 5_3:-64112156 None:intergenic
GGTTGAAATTAAGAATTTGA+AGG 0.477261 5_3:+64106982 Msa0824680:CDS
GGCTTTGTGGAATTGGAACC+TGG 0.477680 5_3:-64106599 None:intergenic
GATGCTCAAGGTTCATCATC+AGG 0.480745 5_3:+64110697 Msa0824680:CDS
ATGCAACCCAAAACTGAACC+TGG 0.480822 5_3:+64106569 Msa0824680:CDS
TTTGACCGTGTCAACTGCAT+TGG 0.491729 5_3:-64112339 None:intergenic
CATCGTCGTCGTCGTCATCA+AGG 0.492320 5_3:-64112199 None:intergenic
GGCTTAGATGCCTCTATTGG+TGG 0.497178 5_3:+64110442 Msa0824680:CDS
AAAGAAGAACAATGAATTGG+AGG 0.497575 5_3:+64106961 Msa0824680:CDS
GCTTAGAGAGGAGTTTCACT+TGG 0.499506 5_3:+64106787 Msa0824680:CDS
TTCACTTGGAGAGACTTTCA+AGG 0.504313 5_3:+64106801 Msa0824680:CDS
AGAAGTGGAGGTGGAAGTGG+AGG 0.504345 5_3:-64112390 None:intergenic
TCCACTTCTACTTCCTCCGA+TGG 0.506545 5_3:+64112404 Msa0824680:CDS
ACTACGTGGAACTTGTCAAT+GGG 0.522509 5_3:+64106664 Msa0824680:CDS
TACTACGTGGAACTTGTCAA+TGG 0.523079 5_3:+64106663 Msa0824680:CDS
GTCACCGAGCAAAGGGATCA+AGG 0.524366 5_3:+64110675 Msa0824680:CDS
TTTCTGCAGGTGAAGAGTGT+TGG 0.526548 5_3:+64111483 Msa0824680:intron
GAGGAAGATGACATTGAATT+GGG 0.529053 5_3:+64107106 Msa0824680:CDS
CATGTCTCGATAATCTTACA+AGG 0.529060 5_3:+64112429 Msa0824680:CDS
GCATCCTTGATCCCTTTGCT+CGG 0.529843 5_3:-64110679 None:intergenic
GTACTCAGTCACCGAGCAAA+GGG 0.531835 5_3:+64110668 Msa0824680:CDS
GGAGGAAGTAGAAGTGGAGG+TGG 0.539101 5_3:-64112399 None:intergenic
TCTATTGGTGGCAACAATGA+GGG 0.540187 5_3:+64110454 Msa0824680:CDS
TCCTCGCTCTCTTCAGAACT+AGG 0.540500 5_3:-64110502 None:intergenic
TCTTCAGAACTAGGAACCAC+TGG 0.540888 5_3:-64110493 None:intergenic
CTCTATTGGTGGCAACAATG+AGG 0.543509 5_3:+64110453 Msa0824680:CDS
TTGGAACCTGGTGGTGACCC+AGG 0.547983 5_3:-64106587 None:intergenic
GGAGAGATTAAAGCTTAGAG+AGG 0.551503 5_3:+64106775 Msa0824680:CDS
GATAACGAGGACGAAAATGC+TGG 0.552464 5_3:+64110556 Msa0824680:intron
TCACTTGGAGAGACTTTCAA+GGG 0.554056 5_3:+64106802 Msa0824680:CDS
GGAGCCTTCTGCTGATCCAG+TGG 0.561757 5_3:+64110477 Msa0824680:CDS
CAAAGCCTCAAGTAATGTCT+CGG 0.571102 5_3:-64110353 None:intergenic
GTTGAGATTACAGGGTCTTG+TGG 0.573376 5_3:+64111536 Msa0824680:CDS
GATGATCAATCTATGTCTCA+AGG 0.574541 5_3:+64112221 Msa0824680:CDS
ACTGAACCTGGGTCACCACC+AGG 0.584855 5_3:+64106581 Msa0824680:CDS
AGTACTCAGTCACCGAGCAA+AGG 0.588934 5_3:+64110667 Msa0824680:CDS
ACCATCGGAGGAAGTAGAAG+TGG 0.600712 5_3:-64112405 None:intergenic
GAGATTACAGGGTCTTGTGG+AGG 0.601325 5_3:+64111539 Msa0824680:CDS
TGGCAACGATGAGTGAGTTG+AGG 0.602280 5_3:+64110293 Msa0824680:CDS
CTATTGGTGGCAACAATGAG+GGG 0.607900 5_3:+64110455 Msa0824680:CDS
AAGATGTAGGCAGACAGTGC+AGG 0.608219 5_3:+64112470 Msa0824680:exon
CATTACTTGAGGCTTTGAAG+AGG 0.609257 5_3:+64110359 Msa0824680:CDS
CATAAATGACATTGTTGACG+AGG 0.611921 5_3:+64110591 Msa0824680:CDS
TGGTATACGCTAGAAAGCCC+AGG 0.612521 5_3:+64111507 Msa0824680:CDS
TGAAAGAGTAACAACGTTGG+AGG 0.614401 5_3:+64110399 Msa0824680:CDS
ATTTGCCAATGCAGTTGACA+CGG 0.617434 5_3:+64112334 Msa0824680:CDS
TCCTAGTTCTGAAGAGAGCG+AGG 0.618367 5_3:+64110501 Msa0824680:CDS
TGAAAGCAGCAAATTGGCAG+AGG 0.619230 5_3:+64110318 Msa0824680:CDS
TGCAACCCAAAACTGAACCT+GGG 0.623349 5_3:+64106570 Msa0824680:CDS
GGAAAACGGTTGAGATTACA+GGG 0.627772 5_3:+64111528 Msa0824680:CDS
AAAGGGATCAAGGATGCTCA+AGG 0.628139 5_3:+64110685 Msa0824680:CDS
CGAAGCCGAGACATTACTTG+AGG 0.631250 5_3:+64110348 Msa0824680:CDS
TGCAGGTGAAGAGTGTTGGA+TGG 0.633165 5_3:+64111487 Msa0824680:intron
GTCTGAATTTAAGAAAAGAG+AGG 0.635967 5_3:+64106835 Msa0824680:CDS
ATTATCGAGACATGAACCAT+CGG 0.637556 5_3:-64112420 None:intergenic
GGAACCACTGGATCAGCAGA+AGG 0.640019 5_3:-64110481 None:intergenic
ATCGGAGGAAGTAGAAGTGG+AGG 0.645940 5_3:-64112402 None:intergenic
GAGGGATATGAGACTCAGAG+AGG 0.679885 5_3:+64106721 Msa0824680:CDS
TATTGGTGGCAACAATGAGG+GGG 0.686512 5_3:+64110456 Msa0824680:CDS
ATCGAGACATGAACCATCGG+AGG 0.699092 5_3:-64112417 None:intergenic
GCGTGAAAGAGTAACAACGT+TGG 0.738449 5_3:+64110396 Msa0824680:CDS
GATCTTGTTATGGTACTACG+TGG 0.742209 5_3:+64106650 Msa0824680:CDS
TTTGTGGAATTGGAACCTGG+TGG 0.802029 5_3:-64106596 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTCTATTAATAATATAATT+CGG - chr5_3:64109773-64109792 None:intergenic 10.0%
!! GAATTATATTATTAATAGAA+CGG + chr5_3:64109772-64109791 Msa0824680:intron 10.0%
!! TAAAGAAGATTAAGAAAAAA+TGG + chr5_3:64107083-64107102 Msa0824680:CDS 15.0%
!! AAAGAAGATTAAGAAAAAAT+GGG + chr5_3:64107084-64107103 Msa0824680:CDS 15.0%
!!! ACAAACAATGATTTTATTTA+GGG + chr5_3:64109464-64109483 Msa0824680:intron 15.0%
!!! TGATATTTCAACTTTTTATT+TGG + chr5_3:64109666-64109685 Msa0824680:intron 15.0%
!! AAAAATATTCAATGTGATAA+TGG - chr5_3:64109909-64109928 None:intergenic 15.0%
!! ATATTAAAACTCAATTTCAT+CGG - chr5_3:64109938-64109957 None:intergenic 15.0%
!!! GTTGAATTTATTTTTGAATT+AGG + chr5_3:64110194-64110213 Msa0824680:intron 15.0%
!! GAATAATTCATAGTTATTAA+GGG + chr5_3:64111595-64111614 Msa0824680:intron 15.0%
!! AATAATTCATAGTTATTAAG+GGG + chr5_3:64111596-64111615 Msa0824680:intron 15.0%
!!! AAACACATTTTTTTTTTCTT+AGG + chr5_3:64111891-64111910 Msa0824680:intron 15.0%
!! AAACAAAAACTTGAAAAATA+AGG - chr5_3:64112073-64112092 None:intergenic 15.0%
!! ACTGATATGTGATATATATA+TGG + chr5_3:64107253-64107272 Msa0824680:intron 20.0%
!!! AAAATCTTGAAAGAGTATTA+GGG + chr5_3:64107553-64107572 Msa0824680:intron 20.0%
!! ATACCCAAAAAATAACTTAA+TGG + chr5_3:64108349-64108368 Msa0824680:intron 20.0%
!!! ATCATCAAGAAATTGATAAT+TGG + chr5_3:64109380-64109399 Msa0824680:intron 20.0%
!! CTAATTCATTAAATATGACA+TGG + chr5_3:64109439-64109458 Msa0824680:intron 20.0%
!!! GACAAACAATGATTTTATTT+AGG + chr5_3:64109463-64109482 Msa0824680:intron 20.0%
!! AGATTGAAGTTTATTTATAG+TGG + chr5_3:64109554-64109573 Msa0824680:intron 20.0%
!!! TTTTGAAAAAGAATTTTGAG+AGG + chr5_3:64109639-64109658 Msa0824680:intron 20.0%
!! TATTAAAACTCAATTTCATC+GGG - chr5_3:64109937-64109956 None:intergenic 20.0%
!! TAAATATTATGTGCTCTATT+TGG - chr5_3:64110042-64110061 None:intergenic 20.0%
!! ATATATTACATAGTGATGTA+TGG - chr5_3:64110094-64110113 None:intergenic 20.0%
!! TCACTATGTAATATATCAAA+TGG + chr5_3:64110098-64110117 Msa0824680:intron 20.0%
!!! TACAATCAATCATTTTACTT+TGG + chr5_3:64110219-64110238 Msa0824680:intron 20.0%
!! TAAGGTTAAAATTGAAGAAT+TGG + chr5_3:64110249-64110268 Msa0824680:intron 20.0%
!! TAATGATCATCTTGATTTAT+TGG - chr5_3:64110628-64110647 None:intergenic 20.0%
!! ACCAGGATATTATATTATTA+TGG + chr5_3:64110962-64110981 Msa0824680:intron 20.0%
!! CCAGGATATTATATTATTAT+GGG + chr5_3:64110963-64110982 Msa0824680:intron 20.0%
!! AATTAAACTTCTATCAAAAG+AGG - chr5_3:64111061-64111080 None:intergenic 20.0%
!! TTCAAAGTACAAACAATAAA+TGG - chr5_3:64111314-64111333 None:intergenic 20.0%
!! GGAATAATTCATAGTTATTA+AGG + chr5_3:64111594-64111613 Msa0824680:intron 20.0%
!! AAATATAGTGAAAATGTGTT+TGG + chr5_3:64111673-64111692 Msa0824680:intron 20.0%
!! AATGAAAAACAAACAAAATC+AGG + chr5_3:64111867-64111886 Msa0824680:intron 20.0%
!! AAAACTTGAAAAATAAGGTA+CGG - chr5_3:64112068-64112087 None:intergenic 20.0%
!!! AACTATTATCTAAGGTAAAT+GGG + chr5_3:64112497-64112516 Msa0824680:three_prime_UTR 20.0%
! AGAAAAGAAGAACAATGAAT+TGG + chr5_3:64106958-64106977 Msa0824680:CDS 25.0%
! GGTTGAAATTAAGAATTTGA+AGG + chr5_3:64106982-64107001 Msa0824680:CDS 25.0%
! AACAAAGATTGTTGAATTAG+AGG + chr5_3:64107045-64107064 Msa0824680:CDS 25.0%
!!! GAAAATCTTGAAAGAGTATT+AGG + chr5_3:64107552-64107571 Msa0824680:intron 25.0%
!!! AAATCTTGAAAGAGTATTAG+GGG + chr5_3:64107554-64107573 Msa0824680:intron 25.0%
! TACATCATTAATCTCTTACA+CGG - chr5_3:64107978-64107997 None:intergenic 25.0%
!!! GGACCATTAAGTTATTTTTT+GGG - chr5_3:64108355-64108374 None:intergenic 25.0%
!! GAATTTTCTATGAAAGACTT+GGG - chr5_3:64108376-64108395 None:intergenic 25.0%
!! TGAATTTTCTATGAAAGACT+TGG - chr5_3:64108377-64108396 None:intergenic 25.0%
! GCAGATTATGTATATTCTAT+TGG - chr5_3:64108544-64108563 None:intergenic 25.0%
!!! AGATTGATGTATTTTTGGTT+GGG + chr5_3:64109075-64109094 Msa0824680:intron 25.0%
!! TCAAGAAATTGATAATTGGT+TGG + chr5_3:64109384-64109403 Msa0824680:intron 25.0%
!!! GCTCTTAAATTTTGAAAAGT+TGG + chr5_3:64109960-64109979 Msa0824680:intron 25.0%
!!! ATTTTAACATGTTTACCAAG+AGG + chr5_3:64110155-64110174 Msa0824680:intron 25.0%
!! ATCAATCATTTTACTTTGGA+TGG + chr5_3:64110223-64110242 Msa0824680:intron 25.0%
! TCATCTTGATTTATTGGTAA+AGG - chr5_3:64110622-64110641 None:intergenic 25.0%
! TCAGAAATGCATATCTATAT+AGG - chr5_3:64110753-64110772 None:intergenic 25.0%
! TTGAATTCAATATGTGTGAT+TGG + chr5_3:64110790-64110809 Msa0824680:intron 25.0%
!! AAATTATGATGACTAGCTAA+TGG - chr5_3:64110902-64110921 None:intergenic 25.0%
! CCCATAATAATATAATATCC+TGG - chr5_3:64110966-64110985 None:intergenic 25.0%
!!! TTTTTTAGAACATTTTCTGC+AGG + chr5_3:64111470-64111489 Msa0824680:intron 25.0%
! AATGATTATTCACTTGTTCA+TGG + chr5_3:64111645-64111664 Msa0824680:intron 25.0%
! TATCAGATAATATATACAGC+AGG - chr5_3:64111936-64111955 None:intergenic 25.0%
!! TGCTTAAACATATCTCTTTT+TGG + chr5_3:64112128-64112147 Msa0824680:intron 25.0%
!!! CATTTAAAGAAAGCTAGTTT+TGG + chr5_3:64112248-64112267 Msa0824680:CDS 25.0%
! TGCAAAAAAGAAAAAGATGT+AGG + chr5_3:64112457-64112476 Msa0824680:CDS 25.0%
!! GAACTATTATCTAAGGTAAA+TGG + chr5_3:64112496-64112515 Msa0824680:three_prime_UTR 25.0%
GTCTATTCATGATCTTGTTA+TGG + chr5_3:64106640-64106659 Msa0824680:CDS 30.0%
GTCTGAATTTAAGAAAAGAG+AGG + chr5_3:64106835-64106854 Msa0824680:CDS 30.0%
!! AGCTCTTTTGAAAGAAGTTA+AGG + chr5_3:64106898-64106917 Msa0824680:intron 30.0%
AAAGAAGAACAATGAATTGG+AGG + chr5_3:64106961-64106980 Msa0824680:CDS 30.0%
GAAGATTAAGAAAAAATGGG+AGG + chr5_3:64107087-64107106 Msa0824680:CDS 30.0%
GGTGAATTAAGAAAAATGAC+TGG + chr5_3:64107127-64107146 Msa0824680:CDS 30.0%
! TGAATTAGAGAGTAAGGTTT+TGG + chr5_3:64107150-64107169 Msa0824680:intron 30.0%
!! AATCTTGAAAGAGTATTAGG+GGG + chr5_3:64107555-64107574 Msa0824680:intron 30.0%
ATTGCAGATATATTCACCAA+GGG - chr5_3:64107584-64107603 None:intergenic 30.0%
AATTGCAGATATATTCACCA+AGG - chr5_3:64107585-64107604 None:intergenic 30.0%
TCCAAGAAAAACACAATAAC+CGG + chr5_3:64107910-64107929 Msa0824680:intron 30.0%
GTAAGAGATTAATGATGTAG+TGG + chr5_3:64107979-64107998 Msa0824680:intron 30.0%
!! ATTAATGATGTAGTGGATGA+TGG + chr5_3:64107986-64108005 Msa0824680:intron 30.0%
!! TATAATGATGGGTCTTCATA+GGG + chr5_3:64108181-64108200 Msa0824680:intron 30.0%
!!! GGGACCATTAAGTTATTTTT+TGG - chr5_3:64108356-64108375 None:intergenic 30.0%
! AATTTGCCATGCTTTAGATA+AGG + chr5_3:64108732-64108751 Msa0824680:intron 30.0%
! GTATTTCCTTATCTAAAGCA+TGG - chr5_3:64108741-64108760 None:intergenic 30.0%
AGGCATAAAGAAAAATCTGA+TGG - chr5_3:64108883-64108902 None:intergenic 30.0%
! TTCGTTCTATGTGGATTTTT+AGG - chr5_3:64108903-64108922 None:intergenic 30.0%
CAAATGTTATTCGTTCTATG+TGG - chr5_3:64108912-64108931 None:intergenic 30.0%
GAACGAATAACATTTGCATT+AGG + chr5_3:64108916-64108935 Msa0824680:intron 30.0%
TCTGATTCAAAATAAGACGT+GGG - chr5_3:64108959-64108978 None:intergenic 30.0%
! TGTGGAGATTGATGTATTTT+TGG + chr5_3:64109070-64109089 Msa0824680:intron 30.0%
!!! GAGATTGATGTATTTTTGGT+TGG + chr5_3:64109074-64109093 Msa0824680:intron 30.0%
! TATATTTTGTGGAGTAGATG+TGG + chr5_3:64109176-64109195 Msa0824680:intron 30.0%
AGTTTATTTATAGTGGCTGA+TGG + chr5_3:64109561-64109580 Msa0824680:intron 30.0%
CAAAAACTTTGTGAAGCAAA+TGG - chr5_3:64109861-64109880 None:intergenic 30.0%
! TGCTTCACAAAGTTTTTGAA+AGG + chr5_3:64109863-64109882 Msa0824680:intron 30.0%
!! GCTTCACAAAGTTTTTGAAA+GGG + chr5_3:64109864-64109883 Msa0824680:intron 30.0%
AATGGTAGAGAATATGTCAA+TGG - chr5_3:64109891-64109910 None:intergenic 30.0%
! ACTTGTGATTTGTGTGAAAT+TGG + chr5_3:64109987-64110006 Msa0824680:intron 30.0%
! CTTGTGATTTGTGTGAAATT+GGG + chr5_3:64109988-64110007 Msa0824680:intron 30.0%
ATGACTATTCGAATTTCTTG+TGG - chr5_3:64110019-64110038 None:intergenic 30.0%
GAGTTATGTGAGTCAATAAA+TGG + chr5_3:64110131-64110150 Msa0824680:intron 30.0%
!! TTTTACTTTGGATGGACTTA+AGG + chr5_3:64110231-64110250 Msa0824680:intron 30.0%
GGTTAAAATTGAAGAATTGG+AGG + chr5_3:64110252-64110271 Msa0824680:intron 30.0%
TGTGTGATTGGATAAATGTT+TGG + chr5_3:64110802-64110821 Msa0824680:intron 30.0%
TTATATTATTATGGGCTCTC+TGG + chr5_3:64110971-64110990 Msa0824680:intron 30.0%
TAGATAAACTCAATTAGCAC+CGG + chr5_3:64111016-64111035 Msa0824680:intron 30.0%
ACCAAATTAACCTAATATCC+CGG - chr5_3:64111038-64111057 None:intergenic 30.0%
AATAAAGATGAACCTTAGAG+AGG - chr5_3:64111107-64111126 None:intergenic 30.0%
! AATGCTACTTACATTTCCTT+AGG - chr5_3:64111185-64111204 None:intergenic 30.0%
ATATACTCCAACACTTGATA+TGG + chr5_3:64111388-64111407 Msa0824680:intron 30.0%
TATACTCCAACACTTGATAT+GGG + chr5_3:64111389-64111408 Msa0824680:intron 30.0%
AATTATCCCATATCAAGTGT+TGG - chr5_3:64111398-64111417 None:intergenic 30.0%
!! TGTTCTAAAAAACTGTCTGA+AGG - chr5_3:64111462-64111481 None:intergenic 30.0%
AATTCATAGTTATTAAGGGG+AGG + chr5_3:64111599-64111618 Msa0824680:intron 30.0%
!!! CAAGTGGATAAACTGTTTTT+TGG + chr5_3:64111718-64111737 Msa0824680:intron 30.0%
CAGGATTGAACTATTATCTA+AGG + chr5_3:64112489-64112508 Msa0824680:three_prime_UTR 30.0%
!! TGATAGTGTTGAAGCTGTTT+TGG + chr5_3:64106694-64106713 Msa0824680:intron 35.0%
!! GTTGCAACAAAGCTTTGAAA+TGG + chr5_3:64106754-64106773 Msa0824680:CDS 35.0%
AGAGAGGAAATTTGTGAGAA+AGG + chr5_3:64106851-64106870 Msa0824680:CDS 35.0%
GAGAGGAAATTTGTGAGAAA+GGG + chr5_3:64106852-64106871 Msa0824680:CDS 35.0%
GAGGAAGATGACATTGAATT+GGG + chr5_3:64107106-64107125 Msa0824680:CDS 35.0%
CCTAGTTATGTTTGCATCAT+GGG + chr5_3:64107309-64107328 Msa0824680:intron 35.0%
! TGACAGAACATAAAAGCACA+TGG - chr5_3:64107405-64107424 None:intergenic 35.0%
TCACTTTGTACGTGAAAAAG+TGG - chr5_3:64107651-64107670 None:intergenic 35.0%
TTTGTACGTTGATGTTGAAC+AGG + chr5_3:64107689-64107708 Msa0824680:intron 35.0%
TTGATGTTGAACAGGATTAC+CGG + chr5_3:64107697-64107716 Msa0824680:intron 35.0%
AGGATTACCGGAAAGATATA+TGG + chr5_3:64107709-64107728 Msa0824680:intron 35.0%
GTTAGTGCCATATATCTTTC+CGG - chr5_3:64107719-64107738 None:intergenic 35.0%
!! ACCATAGTAGCTTTGTGTAT+CGG + chr5_3:64107752-64107771 Msa0824680:intron 35.0%
TTGGAGACAACTTACTATCA+TGG - chr5_3:64107895-64107914 None:intergenic 35.0%
! TCCGGTTATTGTGTTTTTCT+TGG - chr5_3:64107914-64107933 None:intergenic 35.0%
AAGAAAAACACAATAACCGG+AGG + chr5_3:64107913-64107932 Msa0824680:intron 35.0%
!! GTATAATGATGGGTCTTCAT+AGG + chr5_3:64108180-64108199 Msa0824680:intron 35.0%
ATTGCAGTTACTCGACATAA+TGG - chr5_3:64108331-64108350 None:intergenic 35.0%
GTCCACATAAAGAAGAAGAT+AGG + chr5_3:64108459-64108478 Msa0824680:intron 35.0%
! ACAACTCTCTTTTCATCTAC+CGG - chr5_3:64108501-64108520 None:intergenic 35.0%
GTCTGCGAAAATCTTTGTAT+GGG - chr5_3:64108603-64108622 None:intergenic 35.0%
! CATACAAAGATTTTCGCAGA+CGG + chr5_3:64108602-64108621 Msa0824680:intron 35.0%
GTGTATATGCATCAACCTTT+GGG - chr5_3:64108661-64108680 None:intergenic 35.0%
ACATGGTGAACTCAAAGAAA+CGG - chr5_3:64108683-64108702 None:intergenic 35.0%
! GTCAAGAATGCTTTTCTACA+TGG - chr5_3:64108700-64108719 None:intergenic 35.0%
! AATCTGATGGTTCTTTTGAG+AGG - chr5_3:64108870-64108889 None:intergenic 35.0%
CGAATAACATTTGCATTAGG+TGG + chr5_3:64108919-64108938 Msa0824680:intron 35.0%
TAACATTTGCATTAGGTGGA+CGG + chr5_3:64108923-64108942 Msa0824680:intron 35.0%
CTCTGATTCAAAATAAGACG+TGG - chr5_3:64108960-64108979 None:intergenic 35.0%
!! TCCATAGCCATTTTCCAATT+CGG + chr5_3:64108994-64109013 Msa0824680:intron 35.0%
AAAAGACCCGAATTGGAAAA+TGG - chr5_3:64109004-64109023 None:intergenic 35.0%
TGGGTTTAAAAATGCCATGT+TGG + chr5_3:64109094-64109113 Msa0824680:intron 35.0%
TTACCAATCTACCATTAGTG+AGG - chr5_3:64109142-64109161 None:intergenic 35.0%
ATGGTAGATTGGTAAATAGC+AGG + chr5_3:64109147-64109166 Msa0824680:intron 35.0%
GTGATGAAGTGGTTTATGTA+AGG + chr5_3:64109348-64109367 Msa0824680:intron 35.0%
GATATCCTTCAAATCATCGT+GGG - chr5_3:64109509-64109528 None:intergenic 35.0%
! TACACTCATCTACGAGTTTT+CGG - chr5_3:64109609-64109628 None:intergenic 35.0%
! CTTCTTTACCGCCAAATTTT+TGG - chr5_3:64109734-64109753 None:intergenic 35.0%
CCTCATACTTCTTCTCAAAA+TGG - chr5_3:64109816-64109835 None:intergenic 35.0%
!! CCATTTTGAGAAGAAGTATG+AGG + chr5_3:64109813-64109832 Msa0824680:intron 35.0%
!! ATGACCAGAAGTACTCAATA+TGG + chr5_3:64110061-64110080 Msa0824680:intron 35.0%
!! TGACCAGAAGTACTCAATAT+GGG + chr5_3:64110062-64110081 Msa0824680:intron 35.0%
! TTTTGTCATTCTTGTCCTCT+TGG - chr5_3:64110173-64110192 None:intergenic 35.0%
GGAGACAGTAAAGAAGAATT+TGG + chr5_3:64110273-64110292 Msa0824680:intron 35.0%
! GGAAGATCTCATTCTTTTGT+CGG + chr5_3:64110420-64110439 Msa0824680:CDS 35.0%
! GAAGATCTCATTCTTTTGTC+GGG + chr5_3:64110421-64110440 Msa0824680:CDS 35.0%
!! TGATCCTTTTGAAGATAACG+AGG + chr5_3:64110543-64110562 Msa0824680:intron 35.0%
CATAAATGACATTGTTGACG+AGG + chr5_3:64110591-64110610 Msa0824680:CDS 35.0%
CAAGATGATCATTACACTCT+TGG + chr5_3:64110634-64110653 Msa0824680:CDS 35.0%
AAGGTTCATCATCAGGTATA+TGG + chr5_3:64110704-64110723 Msa0824680:intron 35.0%
AGATAAACTCAATTAGCACC+GGG + chr5_3:64111017-64111036 Msa0824680:intron 35.0%
ACCGGGATATTAGGTTAATT+TGG + chr5_3:64111034-64111053 Msa0824680:intron 35.0%
!! GAAATGTAAGTAGCATTGAC+AGG + chr5_3:64111188-64111207 Msa0824680:intron 35.0%
GGAGGTTTATTAGAGAATAG+AGG + chr5_3:64111617-64111636 Msa0824680:intron 35.0%
TGTGTTTGGATTATCTGTTG+AGG + chr5_3:64111687-64111706 Msa0824680:intron 35.0%
TTGGATTATCTGTTGAGGTT+TGG + chr5_3:64111692-64111711 Msa0824680:intron 35.0%
TCAATTACTTGAAGATCCAG+TGG + chr5_3:64111982-64112001 Msa0824680:intron 35.0%
GATGATCAATCTATGTCTCA+AGG + chr5_3:64112221-64112240 Msa0824680:CDS 35.0%
ATTATCGAGACATGAACCAT+CGG - chr5_3:64112423-64112442 None:intergenic 35.0%
CATGTCTCGATAATCTTACA+AGG + chr5_3:64112429-64112448 Msa0824680:CDS 35.0%
! CTTGTTAGGCTTTGTGGAAT+TGG - chr5_3:64106609-64106628 None:intergenic 40.0%
!! TTCAAGCTTGTTAGGCTTTG+TGG - chr5_3:64106615-64106634 None:intergenic 40.0%
! GACTTGTCTTCAAGCTTGTT+AGG - chr5_3:64106623-64106642 None:intergenic 40.0%
! GATCTTGTTATGGTACTACG+TGG + chr5_3:64106650-64106669 Msa0824680:CDS 40.0%
TACTACGTGGAACTTGTCAA+TGG + chr5_3:64106663-64106682 Msa0824680:CDS 40.0%
ACTACGTGGAACTTGTCAAT+GGG + chr5_3:64106664-64106683 Msa0824680:CDS 40.0%
!!! TTGAAGCTGTTTTGGAGAAG+AGG + chr5_3:64106702-64106721 Msa0824680:intron 40.0%
!!! TGAAGCTGTTTTGGAGAAGA+GGG + chr5_3:64106703-64106722 Msa0824680:intron 40.0%
GGAGAGATTAAAGCTTAGAG+AGG + chr5_3:64106775-64106794 Msa0824680:CDS 40.0%
TTCACTTGGAGAGACTTTCA+AGG + chr5_3:64106801-64106820 Msa0824680:CDS 40.0%
TCACTTGGAGAGACTTTCAA+GGG + chr5_3:64106802-64106821 Msa0824680:CDS 40.0%
GGAGGAAGATGACATTGAAT+TGG + chr5_3:64107105-64107124 Msa0824680:CDS 40.0%
GACTGGTGAATTAGAGAGTA+AGG + chr5_3:64107144-64107163 Msa0824680:intron 40.0%
! TTTGGAGTTGACGAAGTCAA+AGG + chr5_3:64107168-64107187 Msa0824680:intron 40.0%
TGACGAAGTCAAAGGAAAAG+TGG + chr5_3:64107176-64107195 Msa0824680:intron 40.0%
GCCTAGTTATGTTTGCATCA+TGG + chr5_3:64107308-64107327 Msa0824680:intron 40.0%
CCCATGATGCAAACATAACT+AGG - chr5_3:64107312-64107331 None:intergenic 40.0%
TGTCATTCACCACAATAGTG+CGG + chr5_3:64107350-64107369 Msa0824680:intron 40.0%
! ACACAGCACATAAAAGCACA+TGG - chr5_3:64107466-64107485 None:intergenic 40.0%
ACGTACAAAACACATCGAGA+TGG - chr5_3:64107678-64107697 None:intergenic 40.0%
TCCGATACACAAAGCTACTA+TGG - chr5_3:64107756-64107775 None:intergenic 40.0%
TCGGACAATGTAGTTCAAGA+AGG + chr5_3:64107771-64107790 Msa0824680:intron 40.0%
GACAATGTAGTTCAAGAAGG+AGG + chr5_3:64107774-64107793 Msa0824680:intron 40.0%
ATTCAGGGAACTAGTCACTA+TGG - chr5_3:64108025-64108044 None:intergenic 40.0%
! TCTTTTTATGCATGACCCCA+TGG - chr5_3:64108086-64108105 None:intergenic 40.0%
TTGTACCGCATATGTGATGT+CGG + chr5_3:64108114-64108133 Msa0824680:intron 40.0%
CAAGGCTACGGTATAATGAT+GGG + chr5_3:64108170-64108189 Msa0824680:intron 40.0%
GGCCTATCTTCTTCTTTATG+TGG - chr5_3:64108464-64108483 None:intergenic 40.0%
CGTCTGCGAAAATCTTTGTA+TGG - chr5_3:64108604-64108623 None:intergenic 40.0%
CAGACATGATGAGGAAGATT+TGG + chr5_3:64108625-64108644 Msa0824680:intron 40.0%
TTTGGATCCTTAAAGCCCAA+AGG + chr5_3:64108643-64108662 Msa0824680:intron 40.0%
GGTGTATATGCATCAACCTT+TGG - chr5_3:64108662-64108681 None:intergenic 40.0%
! AGGAAATACTGAGCACTGTT+CGG + chr5_3:64108752-64108771 Msa0824680:intron 40.0%
! TTGTGGAGAGACTTTTAGTC+CGG - chr5_3:64108797-64108816 None:intergenic 40.0%
AACATTTGCATTAGGTGGAC+GGG + chr5_3:64108924-64108943 Msa0824680:intron 40.0%
!! CCATAGCCATTTTCCAATTC+GGG + chr5_3:64108995-64109014 Msa0824680:intron 40.0%
TAGCACTAAAAGACCCGAAT+TGG - chr5_3:64109011-64109030 None:intergenic 40.0%
! GGTCTTTTAGTGCTAACACA+GGG + chr5_3:64109016-64109035 Msa0824680:intron 40.0%
! GAGAGGTGATTTTGTGACTT+CGG + chr5_3:64109047-64109066 Msa0824680:intron 40.0%
!! TGGTTTGTTGACCTCACTAA+TGG + chr5_3:64109128-64109147 Msa0824680:intron 40.0%
TGACCTCACTAATGGTAGAT+TGG + chr5_3:64109136-64109155 Msa0824680:intron 40.0%
GATTGGTAAATAGCAGGAAG+TGG + chr5_3:64109153-64109172 Msa0824680:intron 40.0%
! GCAGGAAGTGGTATATTTTG+TGG + chr5_3:64109165-64109184 Msa0824680:intron 40.0%
! TTTTGTGGAGTAGATGTGGA+AGG + chr5_3:64109180-64109199 Msa0824680:intron 40.0%
ACCAACTACTCAACTAGAAC+CGG - chr5_3:64109277-64109296 None:intergenic 40.0%
!! GAGCTTTGTTGAGTGATGTT+TGG + chr5_3:64109300-64109319 Msa0824680:intron 40.0%
!! AGAGTGTGCAGCTTTGAAAA+AGG + chr5_3:64109411-64109430 Msa0824680:intron 40.0%
TTGTACCCACGATGATTTGA+AGG + chr5_3:64109501-64109520 Msa0824680:intron 40.0%
GGATATCCTTCAAATCATCG+TGG - chr5_3:64109510-64109529 None:intergenic 40.0%
GGATATCCTAAGAAGACACA+TGG + chr5_3:64109522-64109541 Msa0824680:intron 40.0%
ATAGTGGCTGATGGAAAAAG+AGG + chr5_3:64109570-64109589 Msa0824680:intron 40.0%
TAGTGGCTGATGGAAAAAGA+GGG + chr5_3:64109571-64109590 Msa0824680:intron 40.0%
GAAAACTCGTAGATGAGTGT+AGG + chr5_3:64109608-64109627 Msa0824680:intron 40.0%
! AAGTTGCCATTTGTAGAGCA+TGG + chr5_3:64109706-64109725 Msa0824680:intron 40.0%
! AGAGCATGGTGCCAAAAATT+TGG + chr5_3:64109720-64109739 Msa0824680:intron 40.0%
TCTCCCATATTGAGTACTTC+TGG - chr5_3:64110068-64110087 None:intergenic 40.0%
GAGGAATGAAAGCAGCAAAT+TGG + chr5_3:64110312-64110331 Msa0824680:CDS 40.0%
CAAAGCCTCAAGTAATGTCT+CGG - chr5_3:64110356-64110375 None:intergenic 40.0%
!! CATTACTTGAGGCTTTGAAG+AGG + chr5_3:64110359-64110378 Msa0824680:CDS 40.0%
TGAAAGAGTAACAACGTTGG+AGG + chr5_3:64110399-64110418 Msa0824680:CDS 40.0%
! TCTATTGGTGGCAACAATGA+GGG + chr5_3:64110454-64110473 Msa0824680:CDS 40.0%
TCGTCCTCGTTATCTTCAAA+AGG - chr5_3:64110550-64110569 None:intergenic 40.0%
CAATCACTAGTTGAGCATAC+TGG - chr5_3:64110829-64110848 None:intergenic 40.0%
GTACATACTCAATTAGCACC+AGG + chr5_3:64110945-64110964 Msa0824680:intron 40.0%
! TCAATTAGCACCGGGATATT+AGG + chr5_3:64111025-64111044 Msa0824680:intron 40.0%
AAGATGAACCTTAGAGAGGA+AGG - chr5_3:64111103-64111122 None:intergenic 40.0%
! AGCTGGATCTGATTTTCCTA+AGG + chr5_3:64111166-64111185 Msa0824680:intron 40.0%
! GTAATCTCAACCGTTTTCCT+GGG - chr5_3:64111527-64111546 None:intergenic 40.0%
! TGTAATCTCAACCGTTTTCC+TGG - chr5_3:64111528-64111547 None:intergenic 40.0%
AGGAAAACGGTTGAGATTAC+AGG + chr5_3:64111527-64111546 Msa0824680:CDS 40.0%
GGAAAACGGTTGAGATTACA+GGG + chr5_3:64111528-64111547 Msa0824680:CDS 40.0%
CAGAAAGAAAGCTTCCTCAA+GGG - chr5_3:64111838-64111857 None:intergenic 40.0%
TCAGAAAGAAAGCTTCCTCA+AGG - chr5_3:64111839-64111858 None:intergenic 40.0%
! GGATTTTCCTTGAAATGCTG+AGG + chr5_3:64112007-64112026 Msa0824680:intron 40.0%
! ATATCTCTTTTTGGACCAGC+CGG + chr5_3:64112137-64112156 Msa0824680:intron 40.0%
ATTTGCCAATGCAGTTGACA+CGG + chr5_3:64112334-64112353 Msa0824680:CDS 40.0%
ATGCAACCCAAAACTGAACC+TGG + chr5_3:64106569-64106588 Msa0824680:CDS 45.0%
TGCAACCCAAAACTGAACCT+GGG + chr5_3:64106570-64106589 Msa0824680:CDS 45.0%
TTTGTGGAATTGGAACCTGG+TGG - chr5_3:64106599-64106618 None:intergenic 45.0%
GCTTAGAGAGGAGTTTCACT+TGG + chr5_3:64106787-64106806 Msa0824680:CDS 45.0%
GTCATTCACCACAATAGTGC+GGG + chr5_3:64107351-64107370 Msa0824680:intron 45.0%
!! ATCTGCAATTTGATAGCGCG+AGG + chr5_3:64107595-64107614 Msa0824680:intron 45.0%
!! TCTGCAATTTGATAGCGCGA+GGG + chr5_3:64107596-64107615 Msa0824680:intron 45.0%
! AGTGCTGAAGCTGAATATCG+TGG - chr5_3:64107839-64107858 None:intergenic 45.0%
ACGATATTCAGCTTCAGCAC+TGG + chr5_3:64107838-64107857 Msa0824680:intron 45.0%
! AGACAATGTGGGTTGACGTT+TGG + chr5_3:64107865-64107884 Msa0824680:intron 45.0%
! TCTTACACGGATGCTGATTG+GGG - chr5_3:64107965-64107984 None:intergenic 45.0%
! CTCTTACACGGATGCTGATT+GGG - chr5_3:64107966-64107985 None:intergenic 45.0%
TCTCTTACACGGATGCTGAT+TGG - chr5_3:64107967-64107986 None:intergenic 45.0%
CGCATCTTGCGTTACATTCA+GGG - chr5_3:64108040-64108059 None:intergenic 45.0%
ACGCATCTTGCGTTACATTC+AGG - chr5_3:64108041-64108060 None:intergenic 45.0%
TGTACCGCATATGTGATGTC+GGG + chr5_3:64108115-64108134 Msa0824680:intron 45.0%
GTCTCGTGAAAGTGAGGTAT+TGG + chr5_3:64108137-64108156 Msa0824680:intron 45.0%
! TCATTATACCGTAGCCTTGC+CGG - chr5_3:64108169-64108188 None:intergenic 45.0%
GCAAGGCTACGGTATAATGA+TGG + chr5_3:64108169-64108188 Msa0824680:intron 45.0%
!! ATGATGGGTCTTCATAGGGA+TGG + chr5_3:64108185-64108204 Msa0824680:intron 45.0%
!! TTCATAGGGATGGCTAGTCT+TGG + chr5_3:64108195-64108214 Msa0824680:intron 45.0%
!! CTAGTCTTGGCACTAAGCTT+CGG + chr5_3:64108208-64108227 Msa0824680:intron 45.0%
AGCTTCGGTTTAGTGTCAAC+CGG + chr5_3:64108223-64108242 Msa0824680:intron 45.0%
ATGCAAATCATGTCCCACTC+CGG - chr5_3:64108245-64108264 None:intergenic 45.0%
GATGAAATTCTTGAGCGAGC+AGG - chr5_3:64108277-64108296 None:intergenic 45.0%
GCAGTTACTCGACATAATGG+TGG - chr5_3:64108328-64108347 None:intergenic 45.0%
AGGCCATGTGTGTATCTTTC+CGG + chr5_3:64108479-64108498 Msa0824680:intron 45.0%
CTACCGGAAAGATACACACA+TGG - chr5_3:64108485-64108504 None:intergenic 45.0%
AACCGTTTGTACCATGCTCT+TGG + chr5_3:64108565-64108584 Msa0824680:intron 45.0%
! CTCCAAGAGCATGGTACAAA+CGG - chr5_3:64108570-64108589 None:intergenic 45.0%
GCATCAACCTTTGGGCTTTA+AGG - chr5_3:64108653-64108672 None:intergenic 45.0%
! AATACTGAGCACTGTTCGGA+TGG + chr5_3:64108756-64108775 Msa0824680:intron 45.0%
! CAACAGGTTGGCATAGATTG+TGG - chr5_3:64108814-64108833 None:intergenic 45.0%
CTGCACCATTACCTACAAGT+CGG + chr5_3:64108836-64108855 Msa0824680:intron 45.0%
TGCACCATTACCTACAAGTC+GGG + chr5_3:64108837-64108856 Msa0824680:intron 45.0%
! AAAGCCCGACTTGTAGGTAA+TGG - chr5_3:64108844-64108863 None:intergenic 45.0%
ACATTTGCATTAGGTGGACG+GGG + chr5_3:64108925-64108944 Msa0824680:intron 45.0%
CCCGAATTGGAAAATGGCTA+TGG - chr5_3:64108998-64109017 None:intergenic 45.0%
! GGGTCTTTTAGTGCTAACAC+AGG + chr5_3:64109015-64109034 Msa0824680:intron 45.0%
! GTGATTTTGTGACTTCGGTG+TGG + chr5_3:64109052-64109071 Msa0824680:intron 45.0%
AGGTCAACAAACCAGTTACG+AGG - chr5_3:64109122-64109141 None:intergenic 45.0%
TAGATGTGGAAGGCGAAGTT+TGG + chr5_3:64109190-64109209 Msa0824680:intron 45.0%
AGATGTGGAAGGCGAAGTTT+GGG + chr5_3:64109191-64109210 Msa0824680:intron 45.0%
! TCCGGTTCTAGTTGAGTAGT+TGG + chr5_3:64109273-64109292 Msa0824680:intron 45.0%
!! TGAGTGATGTTTGGTGTCCT+TGG + chr5_3:64109309-64109328 Msa0824680:intron 45.0%
TTCATCACACAAACTAGCCC+AGG - chr5_3:64109336-64109355 None:intergenic 45.0%
!! GGCTAGTTTGTGTGATGAAG+TGG + chr5_3:64109337-64109356 Msa0824680:intron 45.0%
TCCTAAGAAGACACATGGAG+TGG + chr5_3:64109527-64109546 Msa0824680:intron 45.0%
TCCACTCCATGTGTCTTCTT+AGG - chr5_3:64109531-64109550 None:intergenic 45.0%
ACTCGTAGATGAGTGTAGGA+TGG + chr5_3:64109612-64109631 Msa0824680:intron 45.0%
TTGGCACCATGCTCTACAAA+TGG - chr5_3:64109715-64109734 None:intergenic 45.0%
! GCATGGTGCCAAAAATTTGG+CGG + chr5_3:64109723-64109742 Msa0824680:intron 45.0%
TGAAAGCAGCAAATTGGCAG+AGG + chr5_3:64110318-64110337 Msa0824680:CDS 45.0%
GCGTGAAAGAGTAACAACGT+TGG + chr5_3:64110396-64110415 Msa0824680:CDS 45.0%
CTCATTGTTGCCACCAATAG+AGG - chr5_3:64110455-64110474 None:intergenic 45.0%
! CTCTATTGGTGGCAACAATG+AGG + chr5_3:64110453-64110472 Msa0824680:CDS 45.0%
! CTATTGGTGGCAACAATGAG+GGG + chr5_3:64110455-64110474 Msa0824680:CDS 45.0%
! TATTGGTGGCAACAATGAGG+GGG + chr5_3:64110456-64110475 Msa0824680:CDS 45.0%
TCTTCAGAACTAGGAACCAC+TGG - chr5_3:64110496-64110515 None:intergenic 45.0%
GATAACGAGGACGAAAATGC+TGG + chr5_3:64110556-64110575 Msa0824680:intron 45.0%
AAAGGGATCAAGGATGCTCA+AGG + chr5_3:64110685-64110704 Msa0824680:CDS 45.0%
GATGCTCAAGGTTCATCATC+AGG + chr5_3:64110697-64110716 Msa0824680:CDS 45.0%
AGCTTCTTCCTTCCTCTCTA+AGG + chr5_3:64111092-64111111 Msa0824680:intron 45.0%
!! AGTAGCATTGACAGGAACTG+TGG + chr5_3:64111196-64111215 Msa0824680:intron 45.0%
! TTTCTGCAGGTGAAGAGTGT+TGG + chr5_3:64111483-64111502 Msa0824680:intron 45.0%
GTTGAGATTACAGGGTCTTG+TGG + chr5_3:64111536-64111555 Msa0824680:CDS 45.0%
! TGTTGAGGTTTGGTAGCAAG+TGG + chr5_3:64111702-64111721 Msa0824680:intron 45.0%
GATTTCTTCCTCATCCCTTG+AGG + chr5_3:64111821-64111840 Msa0824680:intron 45.0%
TTACTTGAAGATCCAGTGGC+TGG + chr5_3:64111986-64112005 Msa0824680:intron 45.0%
TTCAAGGAAAATCCAGCCAC+TGG - chr5_3:64112001-64112020 None:intergenic 45.0%
CTAGTAGCCTCAGCATTTCA+AGG - chr5_3:64112017-64112036 None:intergenic 45.0%
TTCCAGTTTCACTCTTCCAC+CGG - chr5_3:64112159-64112178 None:intergenic 45.0%
TTTGACCGTGTCAACTGCAT+TGG - chr5_3:64112342-64112361 None:intergenic 45.0%
! GGTGACCCAGGTTCAGTTTT+GGG - chr5_3:64106578-64106597 None:intergenic 50.0%
! TGGTGACCCAGGTTCAGTTT+TGG - chr5_3:64106579-64106598 None:intergenic 50.0%
! GGCTTTGTGGAATTGGAACC+TGG - chr5_3:64106602-64106621 None:intergenic 50.0%
GAGGGATATGAGACTCAGAG+AGG + chr5_3:64106721-64106740 Msa0824680:CDS 50.0%
!! TTTGATAGCGCGAGGGAACA+TGG + chr5_3:64107603-64107622 Msa0824680:intron 50.0%
GTACGTGAAAAAGTGGCTCG+CGG - chr5_3:64107644-64107663 None:intergenic 50.0%
ATGTCGTCTCTGAGTCATGC+TGG - chr5_3:64107808-64107827 None:intergenic 50.0%
GCATGACTCAGAGACGACAT+TGG + chr5_3:64107808-64107827 Msa0824680:intron 50.0%
! AGCACTGGATCGAGACAATG+TGG + chr5_3:64107853-64107872 Msa0824680:intron 50.0%
GCACTGGATCGAGACAATGT+GGG + chr5_3:64107854-64107873 Msa0824680:intron 50.0%
AGAGTGCATGTGATCGTCCA+TGG + chr5_3:64108066-64108085 Msa0824680:intron 50.0%
GAGTGCATGTGATCGTCCAT+GGG + chr5_3:64108067-64108086 Msa0824680:intron 50.0%
AGTGCATGTGATCGTCCATG+GGG + chr5_3:64108068-64108087 Msa0824680:intron 50.0%
GAGACCCGACATCACATATG+CGG - chr5_3:64108122-64108141 None:intergenic 50.0%
!! AGTGAGGTATTGGAGAGCAC+CGG + chr5_3:64108147-64108166 Msa0824680:intron 50.0%
GGTTTAGTGTCAACCGGAGT+GGG + chr5_3:64108229-64108248 Msa0824680:intron 50.0%
TCAAGCAAGCTCCAAGAGCA+TGG - chr5_3:64108579-64108598 None:intergenic 50.0%
!! ATGGTGGCTGGTTTGACAAC+CGG + chr5_3:64108775-64108794 Msa0824680:intron 50.0%
AATGGTGCAGGTCAACAGGT+TGG - chr5_3:64108826-64108845 None:intergenic 50.0%
! AGGTAATGGTGCAGGTCAAC+AGG - chr5_3:64108830-64108849 None:intergenic 50.0%
! CGACTTGTAGGTAATGGTGC+AGG - chr5_3:64108838-64108857 None:intergenic 50.0%
! AGGCATAAAGCCCGACTTGT+AGG - chr5_3:64108850-64108869 None:intergenic 50.0%
AGTGCTAACACAGGGTTACG+AGG + chr5_3:64109024-64109043 Msa0824680:intron 50.0%
GTGCTAACACAGGGTTACGA+GGG + chr5_3:64109025-64109044 Msa0824680:intron 50.0%
! GGTTGAGAGGTAGATTGGTC+TGG + chr5_3:64109216-64109235 Msa0824680:intron 50.0%
!! GAGGTAGATTGGTCTGGTTG+AGG + chr5_3:64109222-64109241 Msa0824680:intron 50.0%
!! GATTGGTCTGGTTGAGGTTG+TGG + chr5_3:64109228-64109247 Msa0824680:intron 50.0%
!! ATGTTTGGTGTCCTTGGACC+TGG + chr5_3:64109315-64109334 Msa0824680:intron 50.0%
!! TGTTTGGTGTCCTTGGACCT+GGG + chr5_3:64109316-64109335 Msa0824680:intron 50.0%
TGGCAACGATGAGTGAGTTG+AGG + chr5_3:64110293-64110312 Msa0824680:CDS 50.0%
CGAAGCCGAGACATTACTTG+AGG + chr5_3:64110348-64110367 Msa0824680:CDS 50.0%
TCGGGCTTAGATGCCTCTAT+TGG + chr5_3:64110439-64110458 Msa0824680:CDS 50.0%
GGCTTAGATGCCTCTATTGG+TGG + chr5_3:64110442-64110461 Msa0824680:CDS 50.0%
!! TCCTAGTTCTGAAGAGAGCG+AGG + chr5_3:64110501-64110520 Msa0824680:CDS 50.0%
TCCTCGCTCTCTTCAGAACT+AGG - chr5_3:64110505-64110524 None:intergenic 50.0%
AGTACTCAGTCACCGAGCAA+AGG + chr5_3:64110667-64110686 Msa0824680:CDS 50.0%
GTACTCAGTCACCGAGCAAA+GGG + chr5_3:64110668-64110687 Msa0824680:CDS 50.0%
GCATCCTTGATCCCTTTGCT+CGG - chr5_3:64110682-64110701 None:intergenic 50.0%
! CTAGCTTGGGCTAGGTAACA+TGG - chr5_3:64111130-64111149 None:intergenic 50.0%
! AGAGAGCCAAGAGCTAGCTT+GGG - chr5_3:64111143-64111162 None:intergenic 50.0%
AAGAGAGCCAAGAGCTAGCT+TGG - chr5_3:64111144-64111163 None:intergenic 50.0%
!! TGCAGGTGAAGAGTGTTGGA+TGG + chr5_3:64111487-64111506 Msa0824680:intron 50.0%
TGGTATACGCTAGAAAGCCC+AGG + chr5_3:64111507-64111526 Msa0824680:CDS 50.0%
CGCTAGAAAGCCCAGGAAAA+CGG + chr5_3:64111514-64111533 Msa0824680:CDS 50.0%
! GAGATTACAGGGTCTTGTGG+AGG + chr5_3:64111539-64111558 Msa0824680:CDS 50.0%
! GTAGCATGCAGAAGGTGTAG+TGG + chr5_3:64111573-64111592 Msa0824680:intron 50.0%
GAAAGCTTCCTCAAGGGATG+AGG - chr5_3:64111832-64111851 None:intergenic 50.0%
AGTAGAAGTGGAGGTGGAAG+TGG - chr5_3:64112396-64112415 None:intergenic 50.0%
ATCGGAGGAAGTAGAAGTGG+AGG - chr5_3:64112405-64112424 None:intergenic 50.0%
TCCACTTCTACTTCCTCCGA+TGG + chr5_3:64112404-64112423 Msa0824680:CDS 50.0%
ACCATCGGAGGAAGTAGAAG+TGG - chr5_3:64112408-64112427 None:intergenic 50.0%
ATCGAGACATGAACCATCGG+AGG - chr5_3:64112420-64112439 None:intergenic 50.0%
AAGATGTAGGCAGACAGTGC+AGG + chr5_3:64112470-64112489 Msa0824680:exon 50.0%
ACCACAATAGTGCGGGTGCT+AGG + chr5_3:64107358-64107377 Msa0824680:intron 55.0%
ACCTAGCACCCGCACTATTG+TGG - chr5_3:64107362-64107381 None:intergenic 55.0%
GAGTATTAGGGGGAGACCCT+TGG + chr5_3:64107565-64107584 Msa0824680:intron 55.0%
GACACTAGACGCTCTACCTC+CGG - chr5_3:64107932-64107951 None:intergenic 55.0%
! GGAGGTAGAGCGTCTAGTGT+CGG + chr5_3:64107931-64107950 Msa0824680:intron 55.0%
! GAGGTAGAGCGTCTAGTGTC+GGG + chr5_3:64107932-64107951 Msa0824680:intron 55.0%
! TACACGGATGCTGATTGGGG+AGG - chr5_3:64107962-64107981 None:intergenic 55.0%
TGTCGGGTCTCGTGAAAGTG+AGG + chr5_3:64108131-64108150 Msa0824680:intron 55.0%
CGGTTTAGTGTCAACCGGAG+TGG + chr5_3:64108228-64108247 Msa0824680:intron 55.0%
! ACTGAGCACTGTTCGGATGG+TGG + chr5_3:64108759-64108778 Msa0824680:intron 55.0%
AACACAGGGTTACGAGGGAG+AGG + chr5_3:64109030-64109049 Msa0824680:intron 55.0%
CCAGTTACGAGGAGCCAACA+TGG - chr5_3:64109111-64109130 None:intergenic 55.0%
!! CCATGTTGGCTCCTCGTAAC+TGG + chr5_3:64109108-64109127 Msa0824680:intron 55.0%
GTGGAAGGCGAAGTTTGGGT+CGG + chr5_3:64109195-64109214 Msa0824680:intron 55.0%
CGAAGTTTGGGTCGGTTGAG+AGG + chr5_3:64109203-64109222 Msa0824680:intron 55.0%
GGGTCGGTTGAGAGGTAGAT+TGG + chr5_3:64109211-64109230 Msa0824680:intron 55.0%
TGAGGTTGTGGCCGAAACAC+AGG + chr5_3:64109240-64109259 Msa0824680:intron 55.0%
GAGGTTGTGGCCGAAACACA+GGG + chr5_3:64109241-64109260 Msa0824680:intron 55.0%
AGGTTGTGGCCGAAACACAG+GGG + chr5_3:64109242-64109261 Msa0824680:intron 55.0%
ACCCAACTCCCCCTGTGTTT+CGG - chr5_3:64109254-64109273 None:intergenic 55.0%
CACAAACTAGCCCAGGTCCA+AGG - chr5_3:64109329-64109348 None:intergenic 55.0%
GGAACCACTGGATCAGCAGA+AGG - chr5_3:64110484-64110503 None:intergenic 55.0%
! CGAGGAAGAGCGTGTTCATG+TGG + chr5_3:64110519-64110538 Msa0824680:intron 55.0%
GTCACCGAGCAAAGGGATCA+AGG + chr5_3:64110675-64110694 Msa0824680:CDS 55.0%
! ACCTAGCCCAAGCTAGCTCT+TGG + chr5_3:64111134-64111153 Msa0824680:intron 55.0%
! GCTCTTGGCTCTCTTGTAGC+TGG + chr5_3:64111149-64111168 Msa0824680:intron 55.0%
! TCTCTTTTTGGACCAGCCGG+TGG + chr5_3:64112140-64112159 Msa0824680:intron 55.0%
AGTTTCACTCTTCCACCGGC+TGG - chr5_3:64112155-64112174 None:intergenic 55.0%
AGCCGGTGGAAGAGTGAAAC+TGG + chr5_3:64112154-64112173 Msa0824680:intron 55.0%
CATCGTCGTCGTCGTCATCA+AGG - chr5_3:64112202-64112221 None:intergenic 55.0%
GCCAAGTTCATCAGCAGCAC+TGG + chr5_3:64112292-64112311 Msa0824680:CDS 55.0%
! GCCAGTGCTGCTGATGAACT+TGG - chr5_3:64112296-64112315 None:intergenic 55.0%
AGAAGTGGAGGTGGAAGTGG+AGG - chr5_3:64112393-64112412 None:intergenic 55.0%
GGAGGAAGTAGAAGTGGAGG+TGG - chr5_3:64112402-64112421 None:intergenic 55.0%
ACTGAACCTGGGTCACCACC+AGG + chr5_3:64106581-64106600 Msa0824680:CDS 60.0%
! TTGGAACCTGGTGGTGACCC+AGG - chr5_3:64106590-64106609 None:intergenic 60.0%
TCACACCCCCGCAGTTGAAG+CGG + chr5_3:64107502-64107521 Msa0824680:intron 60.0%
AACCTCCCGCTTCAACTGCG+GGG - chr5_3:64107511-64107530 None:intergenic 60.0%
CAACCTCCCGCTTCAACTGC+GGG - chr5_3:64107512-64107531 None:intergenic 60.0%
CCAACCTCCCGCTTCAACTG+CGG - chr5_3:64107513-64107532 None:intergenic 60.0%
!! GGTATTGGAGAGCACCGGCA+AGG + chr5_3:64108152-64108171 Msa0824680:intron 60.0%
CGCAGACGGCAGACATGATG+AGG + chr5_3:64108616-64108635 Msa0824680:intron 60.0%
! AGCACTGTTCGGATGGTGGC+TGG + chr5_3:64108763-64108782 Msa0824680:intron 60.0%
GGTTGTGGCCGAAACACAGG+GGG + chr5_3:64109243-64109262 Msa0824680:intron 60.0%
GCCGAAACACAGGGGGAGTT+GGG + chr5_3:64109250-64109269 Msa0824680:intron 60.0%
AACACAGGGGGAGTTGGGTC+CGG + chr5_3:64109255-64109274 Msa0824680:intron 60.0%
GGAGCCTTCTGCTGATCCAG+TGG + chr5_3:64110477-64110496 Msa0824680:CDS 60.0%
! GCCAAGAGCTAGCTTGGGCT+AGG - chr5_3:64111138-64111157 None:intergenic 60.0%
CACACCCCCGCAGTTGAAGC+GGG + chr5_3:64107503-64107522 Msa0824680:intron 65.0%
ACCTCCCGCTTCAACTGCGG+GGG - chr5_3:64107510-64107529 None:intergenic 65.0%
CCGCAGTTGAAGCGGGAGGT+TGG + chr5_3:64107510-64107529 Msa0824680:intron 65.0%
!! GGAGAGCACCGGCAAGGCTA+CGG + chr5_3:64108158-64108177 Msa0824680:intron 65.0%
GGCCGAAACACAGGGGGAGT+TGG + chr5_3:64109249-64109268 Msa0824680:intron 65.0%
ACCCCCGCAGTTGAAGCGGG+AGG + chr5_3:64107506-64107525 Msa0824680:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 64106569 64112540 64106569 ID=Msa0824680;Name=Msa0824680
chr5_3 mRNA 64106569 64112540 64106569 ID=Msa0824680-mRNA-1;Parent=Msa0824680;Name=Msa0824680-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.33|0.28|1|0.66|0.57|7|62|455
chr5_3 exon 64106569 64106698 64106569 ID=Msa0824680-mRNA-1:exon:20006;Parent=Msa0824680-mRNA-1
chr5_3 exon 64106708 64106913 64106708 ID=Msa0824680-mRNA-1:exon:20007;Parent=Msa0824680-mRNA-1
chr5_3 exon 64106920 64107148 64106920 ID=Msa0824680-mRNA-1:exon:20008;Parent=Msa0824680-mRNA-1
chr5_3 exon 64110281 64110529 64110281 ID=Msa0824680-mRNA-1:exon:20009;Parent=Msa0824680-mRNA-1
chr5_3 exon 64110557 64110718 64110557 ID=Msa0824680-mRNA-1:exon:20010;Parent=Msa0824680-mRNA-1
chr5_3 exon 64111492 64111560 64111492 ID=Msa0824680-mRNA-1:exon:20011;Parent=Msa0824680-mRNA-1
chr5_3 exon 64112156 64112540 64112156 ID=Msa0824680-mRNA-1:exon:20012;Parent=Msa0824680-mRNA-1
chr5_3 CDS 64106569 64106698 64106569 ID=Msa0824680-mRNA-1:cds;Parent=Msa0824680-mRNA-1
chr5_3 CDS 64106708 64106913 64106708 ID=Msa0824680-mRNA-1:cds;Parent=Msa0824680-mRNA-1
chr5_3 CDS 64106920 64107148 64106920 ID=Msa0824680-mRNA-1:cds;Parent=Msa0824680-mRNA-1
chr5_3 CDS 64110281 64110529 64110281 ID=Msa0824680-mRNA-1:cds;Parent=Msa0824680-mRNA-1
chr5_3 CDS 64110557 64110718 64110557 ID=Msa0824680-mRNA-1:cds;Parent=Msa0824680-mRNA-1
chr5_3 CDS 64111492 64111560 64111492 ID=Msa0824680-mRNA-1:cds;Parent=Msa0824680-mRNA-1
chr5_3 CDS 64112156 64112478 64112156 ID=Msa0824680-mRNA-1:cds;Parent=Msa0824680-mRNA-1
chr5_3 three_prime_UTR 64112479 64112540 64112479 ID=Msa0824680-mRNA-1:three_prime_utr;Parent=Msa0824680-mRNA-1
Gene Sequence

>Msa0824680

ATGCAACCCAAAACTGAACCTGGGTCACCACCAGGTTCCAATTCCACAAAGCCTAACAAGCTTGAAGACAAGTCTATTCATGATCTTGTTATGGTACTACGTGGAACTTGTCAATGGGAAACTTTTGATACTGTTTTGGAGAAGAGGGATATGAGACTCAGAGAGGAGAATCAAAAGTTGCAACAAAGCTTTGAAATGGAGAGATTAAAGCTTAGAGAGGAGTTTCACTTGGAGAGACTTTCAAGGGTGTATGCTGAGTCTGAATTTAAGAAAAGAGAGGAAATTTGTGAGAAAGGGAAGAAAGTGCAAGAAAGTTATGAAGCTCTTTTGAAAGAAGTAAATAGATTAGCTGATAGAAAAACTAATGAAGAGTTAGAAAAGAAGAACAATGAATTGGAGGTTGAAATTAAGAATTTGAAGGAGAAATGTGTTGATCGTAGCAATGAAGTTGATGTCTTAAGAACAAAGATTGTTGAATTAGAGGATGAAGTTTTAGAGTTAAAGAAGATTAAGAAAAAATGGGAGGAAGATGACATTGAATTGGGTGAATTAAGAAAAATGACTGTAAAGAAGAATTTGGCAACGATGAGTGAGTTGAGGAATGAAAGCAGCAAATTGGCAGAGGAGAAGCGCGAAGCCGAGACATTACTTGAGGCTTTGAAGAGGAAGTTTATTCGACTGCGTGAAAGAGTAACAACGTTGGAGGAAGATCTCATTCTTTTGTCGGGCTTAGATGCCTCTATTGGTGGCAACAATGAGGGGGAGCCTTCTGCTGATCCAGTGGTTCCTAGTTCTGAAGAGAGCGAGGAAGAGCATAACGAGGACGAAAATGCTGGTGAAGATGAGTTCATAAATGACATTGTTGACGAGGCTGCTCCTTTACCAATAAATCAAGATGATCATTACACTCTTGGAGTTGCTGCTAGTACTCAGTCACCGAGCAAAGGGATCAAGGATGCTCAAGGTTCATCATCAGGTGAAGAGTGTTGGATGGTATACGCTAGAAAGCCCAGGAAAACGGTTGAGATTACAGGGTCTTGTGGAGCCGGTGGAAGAGTGAAACTGGAAAATGAGATTGAGATCATAAACCTTGATGACGACGACGACGATGATGATCAATCTATGTCTCAAGGAGTACATTTAAAGAAAGCTAGTTTTGGAATGACTGTGAAGATTGAAGAGCCAAGTTCATCAGCAGCACTGGCAACACAACAAAAAAGCAAATTTGCCAATGCAGTTGACACGGTCAAAAGAAAATTTTCTTTCAGCGACAGTGAAACCTCCACTTCCACCTCCACTTCTACTTCCTCCGATGGTTCATGTCTCGATAATCTTACAAGGTCTGATGCAAAAAAGAAAAAGATGTAG

Protein sequence

>Msa0824680

MQPKTEPGSPPGSNSTKPNKLEDKSIHDLVMVLRGTCQWETFDTVLEKRDMRLREENQKLQQSFEMERLKLREEFHLERLSRVYAESEFKKREEICEKGKKVQESYEALLKEVNRLADRKTNEELEKKNNELEVEIKNLKEKCVDRSNEVDVLRTKIVELEDEVLELKKIKKKWEEDDIELGELRKMTVKKNLATMSELRNESSKLAEEKREAETLLEALKRKFIRLRERVTTLEEDLILLSGLDASIGGNNEGEPSADPVVPSSEESEEEHNEDENAGEDEFINDIVDEAAPLPINQDDHYTLGVAASTQSPSKGIKDAQGSSSGEECWMVYARKPRKTVEITGSCGAGGRVKLENEIEIINLDDDDDDDDQSMSQGVHLKKASFGMTVKIEEPSSSAALATQQKSKFANAVDTVKRKFSFSDSETSTSTSTSTSSDGSCLDNLTRSDAKKKKM*