AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002560 MtrunA17_Chr3g0126501 98.435 703 10 1 1 703 2 703 0.0 1450
Msa0002560 MtrunA17_Chr6g0476751 45.170 735 320 13 1 698 1 689 0.0 600
Msa0002560 MtrunA17_Chr3g0132181 40.990 788 352 20 1 696 15 781 0.0 538
Msa0002560 MtrunA17_Chr3g0120851 39.024 738 351 17 1 697 1 680 4.77e-166 493
Msa0002560 MtrunA17_Chr5g0447431 38.784 740 350 20 1 693 1 684 8.08e-154 462
Msa0002560 MtrunA17_Chr1g0191281 31.690 710 405 20 1 691 1 649 1.08e-105 336
Msa0002560 MtrunA17_Chr7g0273491 31.671 742 425 19 1 703 1 699 1.43e-104 343
Msa0002560 MtrunA17_Chr7g0273491 28.378 222 141 6 471 686 870 1079 3.12e-18 89.7
Msa0002560 MtrunA17_Chr4g0066631 32.312 718 409 17 1 697 1 662 3.01e-102 334
Msa0002560 MtrunA17_Chr4g0066631 36.864 236 125 10 466 690 730 952 1.39e-30 129
Msa0002560 MtrunA17_Chr2g0286511 32.187 727 401 22 1 692 1 670 3.82e-101 331
Msa0002560 MtrunA17_Chr2g0286511 31.646 237 138 8 463 686 714 939 1.60e-23 106
Msa0002560 MtrunA17_Chr1g0178901 36.996 273 160 7 428 691 376 645 2.97e-51 189
Msa0002560 MtrunA17_Chr1g0178901 41.964 224 105 7 1 222 1 201 7.93e-40 155
Msa0002560 MtrunA17_Chr5g0410601 41.631 233 129 3 463 693 322 549 5.83e-46 172
Msa0002560 MtrunA17_Chr1g0172601 37.339 233 135 6 462 691 152 376 5.80e-44 162
Msa0002560 MtrunA17_Chr1g0191271 53.659 123 56 1 1 122 1 123 2.87e-37 135
Msa0002560 MtrunA17_Chr5g0427371 33.613 238 139 6 1 228 2 230 3.41e-30 122
Msa0002560 MtrunA17_Chr8g0338171 33.000 200 121 4 498 697 1 187 1.50e-27 114
Msa0002560 MtrunA17_Chr3g0132971 31.624 234 109 6 1 228 1 189 3.73e-25 104
Msa0002560 MtrunA17_Chr8g0338141 55.556 72 31 1 1 71 1 72 6.97e-23 92.8
Msa0002560 MtrunA17_Chr4g0049941 29.572 257 151 7 4 230 5 261 1.01e-20 96.3
Msa0002560 MtrunA17_Chr8g0338161 39.437 142 75 4 82 223 2 132 1.81e-20 92.0
Msa0002560 MtrunA17_Chr2g0295361 59.091 66 27 0 65 130 38 103 2.06e-16 80.1
Msa0002560 MtrunA17_Chr2g0279591 33.071 127 84 1 4 129 5 131 1.12e-14 77.4
Msa0002560 MtrunA17_Chr2g0295821 33.735 166 72 2 1 128 1 166 1.28e-14 76.3
Msa0002560 MtrunA17_Chr1g0191291 56.452 62 27 0 1 62 1 62 2.02e-14 72.4
Msa0002560 MtrunA17_Chr2g0295831 32.370 173 71 3 1 128 1 172 1.19e-13 71.2
Msa0002560 MtrunA17_Chr4g0067741 54.545 66 30 0 65 130 36 101 1.86e-13 71.2
Msa0002560 MtrunA17_Chr2g0307061 43.836 73 41 0 55 127 99 171 1.34e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002560 AT5G53150.3 46.371 744 331 16 1 703 1 717 0.0 628
Msa0002560 AT5G53150.6 46.371 744 331 16 1 703 1 717 0.0 628
Msa0002560 AT5G53150.2 46.371 744 331 16 1 703 1 717 0.0 628
Msa0002560 AT5G53150.4 46.477 738 310 18 1 703 1 688 0.0 616
Msa0002560 AT5G53150.1 46.477 738 310 18 1 703 1 688 0.0 616
Msa0002560 AT2G25560.1 39.210 709 354 16 1 691 1 650 6.22e-146 441
Msa0002560 AT2G05230.1 34.293 764 377 19 1 697 1 706 2.60e-136 417
Msa0002560 AT2G05250.1 34.293 764 377 19 1 697 1 706 2.60e-136 417
Msa0002560 AT5G53150.5 41.788 548 252 15 1 508 1 521 8.96e-122 375
Msa0002560 AT5G35753.1 38.462 364 201 7 339 691 72 423 8.20e-77 253
Msa0002560 AT5G37380.8 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0002560 AT5G37380.4 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0002560 AT5G37380.7 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0002560 AT5G37380.2 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0002560 AT5G37380.6 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0002560 AT5G37380.1 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0002560 AT5G37380.5 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0002560 AT5G37380.3 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0002560 AT5G37380.9 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0002560 AT5G50115.1 41.935 279 127 4 424 701 227 471 8.82e-66 225
Msa0002560 AT5G50115.1 31.013 158 102 2 2 152 10 167 3.56e-15 79.3
Msa0002560 AT4G19570.1 44.534 247 111 6 1 222 1 246 1.33e-55 199
Msa0002560 AT5G37440.1 38.782 312 136 11 1 306 16 278 9.64e-53 184
Msa0002560 AT5G37750.1 42.797 236 89 8 11 244 23 214 1.03e-51 179
Msa0002560 AT4G19590.3 63.158 133 48 1 1 132 1 133 5.30e-49 176
Msa0002560 AT4G19590.2 63.158 133 48 1 1 132 1 133 7.54e-49 176
Msa0002560 AT4G19590.2 32.836 134 74 4 177 294 210 343 1.86e-11 67.0
Msa0002560 AT3G04980.2 44.444 225 99 3 1 224 1 200 3.24e-48 184
Msa0002560 AT3G04980.2 33.906 233 140 7 464 692 490 712 6.71e-34 140
Msa0002560 AT3G04980.2 29.183 257 153 10 445 692 946 1182 3.38e-17 87.0
Msa0002560 AT3G04980.3 44.444 225 99 3 1 224 1 200 3.24e-48 184
Msa0002560 AT3G04980.3 33.906 233 140 7 464 692 490 712 6.71e-34 140
Msa0002560 AT3G04980.3 29.183 257 153 10 445 692 946 1182 3.38e-17 87.0
Msa0002560 AT4G19580.1 41.350 237 100 7 1 199 1 236 9.48e-44 160
Msa0002560 AT4G19590.1 61.983 121 45 1 13 132 2 122 7.56e-42 155
Msa0002560 AT3G04960.2 39.245 265 135 10 433 686 235 484 1.41e-41 159
Msa0002560 AT3G04960.4 39.245 265 135 10 433 686 284 533 2.64e-41 159
Msa0002560 AT5G18750.1 37.607 234 139 4 464 691 396 628 2.74e-41 162
Msa0002560 AT5G18750.1 33.793 290 171 6 4 280 3 284 9.53e-35 142
Msa0002560 AT5G18750.1 34.052 232 142 7 463 689 656 881 6.86e-30 127
Msa0002560 AT3G04960.1 39.245 265 135 10 433 686 287 536 4.65e-41 158
Msa0002560 AT3G04960.3 39.245 265 135 10 433 686 336 585 6.98e-41 159
Msa0002560 AT5G27240.1 38.197 233 131 6 462 692 471 692 2.74e-40 159
Msa0002560 AT5G27240.1 38.393 224 108 2 1 224 1 194 8.25e-40 158
Msa0002560 AT5G27240.1 33.333 195 107 7 473 661 895 1072 2.53e-18 90.5
Msa0002560 AT5G27240.2 38.197 233 131 6 462 692 471 692 2.74e-40 159
Msa0002560 AT5G27240.2 38.393 224 108 2 1 224 1 194 8.25e-40 158
Msa0002560 AT5G27240.2 33.333 195 107 7 473 661 895 1072 2.53e-18 90.5
Msa0002560 AT5G27240.3 38.197 233 131 6 462 692 471 692 2.74e-40 159
Msa0002560 AT5G27240.3 38.393 224 108 2 1 224 1 194 8.25e-40 158
Msa0002560 AT5G27240.3 33.333 195 107 7 473 661 895 1072 2.53e-18 90.5
Msa0002560 AT3G04980.1 43.350 203 89 3 23 224 5 182 3.45e-40 159
Msa0002560 AT3G04980.1 33.906 233 140 7 464 692 472 694 7.05e-34 139
Msa0002560 AT3G04980.1 29.183 257 153 10 445 692 928 1164 3.57e-17 86.7
Msa0002560 AT3G06340.2 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0002560 AT3G06340.2 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0002560 AT3G06340.4 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0002560 AT3G06340.4 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0002560 AT3G06340.3 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0002560 AT3G06340.3 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0002560 AT3G06340.1 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0002560 AT3G06340.1 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0002560 AT5G18740.1 32.365 241 147 4 471 697 174 412 3.48e-33 133
Msa0002560 AT4G27980.1 33.333 240 144 9 452 686 301 529 4.86e-30 125
Msa0002560 AT4G27980.2 34.071 226 136 8 463 686 353 567 7.13e-30 125
Msa0002560 AT4G27980.3 32.500 240 146 8 452 686 338 566 7.97e-30 125
Msa0002560 AT2G01710.1 32.189 233 118 5 4 228 7 207 8.32e-29 117
Msa0002560 AT2G01710.2 32.189 233 118 5 4 228 51 251 1.57e-28 118
Msa0002560 AT2G35540.1 33.480 227 140 6 468 690 368 587 6.59e-28 119
Msa0002560 AT2G35540.1 30.374 214 111 2 7 220 12 187 1.61e-25 112
Msa0002560 AT5G18730.1 31.818 242 148 6 471 697 44 283 1.42e-27 118
Msa0002560 AT5G18730.1 27.586 232 137 9 483 691 304 527 1.05e-12 71.6
Msa0002560 AT3G05110.1 33.488 215 126 6 463 674 158 358 1.90e-27 115
Msa0002560 AT5G64360.1 30.594 219 140 6 15 229 25 235 1.33e-21 98.6
Msa0002560 AT5G37760.1 41.606 137 50 2 13 149 79 185 1.52e-21 94.0
Msa0002560 AT5G64360.5 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0002560 AT5G64360.7 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0002560 AT5G64360.6 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0002560 AT5G64360.3 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0002560 AT5G64360.2 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0002560 AT5G64360.4 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0002560 AT5G62780.1 51.220 82 28 1 51 120 3 84 1.53e-18 85.1
Msa0002560 AT5G09540.1 28.879 232 133 6 2 229 8 211 1.87e-18 86.7
Msa0002560 AT5G50510.1 34.711 121 74 1 2 122 10 125 3.97e-15 75.9
Msa0002560 AT5G50620.1 34.711 121 74 1 2 122 10 125 3.97e-15 75.9
Msa0002560 AT3G06778.1 46.154 78 42 0 53 130 29 106 2.78e-14 73.2
Msa0002560 AT1G09260.1 35.870 92 55 2 43 133 50 138 8.88e-14 69.3
Msa0002560 AT5G18720.3 27.426 237 131 9 483 690 114 338 1.41e-13 73.2
Msa0002560 AT5G18720.2 27.426 237 131 9 483 690 114 338 1.41e-13 73.2
Msa0002560 AT5G18720.1 27.426 237 131 9 483 690 114 338 1.41e-13 73.2
Msa0002560 AT5G49060.2 31.579 171 84 3 1 138 1 171 1.31e-12 70.5
Msa0002560 AT5G49060.1 31.579 171 84 3 1 138 1 171 1.31e-12 70.5
Msa0002560 AT1G62970.1 29.851 134 81 4 15 135 18 151 6.22e-12 69.7
Msa0002560 AT3G57340.1 43.836 73 41 0 55 127 102 174 4.02e-11 65.9
Msa0002560 AT3G57340.2 43.836 73 41 0 55 127 102 174 4.02e-11 65.9
Msa0002560 AT5G05750.1 44.118 68 38 0 60 127 108 175 7.89e-11 64.3

Find 171 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAACTTGTGGGGATTTC+AGG 0.135241 1_1:+4455401 Msa0002560:CDS
ACTCCCCTTGTTAAGTTTCC+TGG 0.260877 1_1:+4455652 Msa0002560:CDS
GCAGATGATATTCGCGTTAA+TGG 0.268418 1_1:+4454743 Msa0002560:CDS
TTCTGCCCCTCCACAGAAAA+AGG 0.278721 1_1:+4454316 Msa0002560:CDS
TTGTTAAGTTTCCTGGCTTT+AGG 0.285789 1_1:+4455659 Msa0002560:CDS
GCAGGTTTGGGCAGTTTCTC+TGG 0.291233 1_1:+4454812 Msa0002560:CDS
CAGGATGACGTTGTGAATTC+TGG 0.294891 1_1:-4454511 None:intergenic
CAACTAATCCGCATTCTAAA+TGG 0.298217 1_1:-4455319 None:intergenic
CCAATAGATTGGGTAGGTTC+TGG 0.312215 1_1:+4455373 Msa0002560:CDS
CACTCCAGAATGGCTGGTTT+TGG 0.313195 1_1:+4454566 Msa0002560:CDS
CCAGAACCTACCCAATCTAT+TGG 0.320518 1_1:-4455373 None:intergenic
TCCAACTCTCGGCAACCTAT+TGG 0.323407 1_1:-4455802 None:intergenic
CTGGTTATATTCTAGTCTCT+TGG 0.331341 1_1:-4454144 None:intergenic
CTCTCGAAGCAACAGTGAAT+TGG 0.332588 1_1:+4455348 Msa0002560:CDS
AATCGAAACATCTCCTCTTT+AGG 0.335882 1_1:-4455727 None:intergenic
CCTTTGCAGAGGACCAGGTC+TGG 0.336859 1_1:+4455227 Msa0002560:CDS
GCTACCAAAACCAGCCATTC+TGG 0.342521 1_1:-4454570 None:intergenic
TTTGAACTAGGTACATTTGA+TGG 0.348433 1_1:-4454218 None:intergenic
GGAGTTGTCCGCATCTTTCC+AGG 0.349771 1_1:+4455496 Msa0002560:CDS
ACTTGAAGAATGGAGGTTAA+TGG 0.359594 1_1:+4454976 Msa0002560:CDS
AGCCTTTCAAACTCCTCTTC+TGG 0.362339 1_1:-4454163 None:intergenic
GGATCTGGAGCAGCAGGTTT+GGG 0.373731 1_1:+4454800 Msa0002560:CDS
CATTTAGAATGCGGATTAGT+TGG 0.373866 1_1:+4455320 Msa0002560:CDS
GTGAATTCTGGTGCTGTTGA+TGG 0.377846 1_1:-4454499 None:intergenic
GGGATCTGGAGCAGCAGGTT+TGG 0.384095 1_1:+4454799 Msa0002560:CDS
GAATCCTCCTAACCTCATTC+TGG 0.385216 1_1:-4455705 None:intergenic
TTGGAGCGTTATGAGCTTCC+TGG 0.385283 1_1:-4455783 None:intergenic
AGGTTTGAATTATTACTTCC+AGG 0.385391 1_1:-4454530 None:intergenic
TGATGGGAGGGCAAACTTGA+TGG 0.385605 1_1:-4454482 None:intergenic
ATAGAAACTGGTCTCCTGAT+TGG 0.387089 1_1:+4455542 Msa0002560:CDS
CTTTGCAGAGGACCAGGTCT+GGG 0.387294 1_1:+4455228 Msa0002560:CDS
TATGGAGAGTCCAATGTTAA+TGG 0.390480 1_1:+4455073 Msa0002560:CDS
CTCTCCCATTCAGCAATTGA+TGG 0.393875 1_1:-4454674 None:intergenic
AGGTCAAAATTGTGAAAATC+AGG 0.395280 1_1:-4455187 None:intergenic
GAACAAAGTAAGTGGAGAAA+TGG 0.401074 1_1:+4453956 Msa0002560:CDS
GCAACTTCAAATGTGAGGTC+TGG 0.403438 1_1:+4454266 Msa0002560:CDS
TTGGGCAGTTTCTCTGGATC+AGG 0.403555 1_1:+4454818 Msa0002560:CDS
GTGAATTGGGCCCAATAGAT+TGG 0.406953 1_1:+4455362 Msa0002560:CDS
TCTGGGCACTTTATAGAAAC+TGG 0.408209 1_1:+4455530 Msa0002560:CDS
ACAACTGGTTCAGAGAAGTA+TGG 0.411674 1_1:+4455055 Msa0002560:CDS
GATGTTTCGATTCTCTCATC+AGG 0.412444 1_1:+4455738 Msa0002560:CDS
TCCTAACCTCATTCTGGTCC+TGG 0.413595 1_1:-4455699 None:intergenic
TGCAAAGAAGTTTGCTATCA+AGG 0.415023 1_1:+4453860 Msa0002560:CDS
TAATGGCTATCCAGGATATA+CGG 0.416189 1_1:+4454760 Msa0002560:CDS
AGCACCATCAATTGCTGAAT+GGG 0.416490 1_1:+4454670 Msa0002560:CDS
CTATGTTACAATCAATGTTC+CGG 0.418874 1_1:+4455162 Msa0002560:CDS
GCAACAAAGATGAGGCAGTC+AGG 0.422134 1_1:+4453790 Msa0002560:CDS
TGGATCAGGAAAGGCTAACT+TGG 0.429304 1_1:+4454832 Msa0002560:CDS
TGTCCGCATCTTTCCAGGTA+AGG 0.431625 1_1:+4455501 Msa0002560:CDS
TACTTGTGTATCACTTCATC+TGG 0.431902 1_1:-4455577 None:intergenic
GGGAGGAGGACTCCTCTCTA+TGG 0.433642 1_1:-4454447 None:intergenic
GATGGATGCCCAGCACGGTT+TGG 0.435679 1_1:-4454200 None:intergenic
CCGCATTCTAAATGGCTTTG+TGG 0.437694 1_1:-4455311 None:intergenic
CGGAACATTGATTGTAACAT+AGG 0.437900 1_1:-4455161 None:intergenic
TCTCGAAGCAACAGTGAATT+GGG 0.438567 1_1:+4455349 Msa0002560:CDS
TGCAGAGGGTGCATTTCAGC+TGG 0.443695 1_1:+4454088 Msa0002560:CDS
TAGAAAGCAGTACAGGAAAC+TGG 0.447905 1_1:+4454028 Msa0002560:CDS
TGAATTCTAGCATAATATCT+AGG 0.449645 1_1:-4455277 None:intergenic
AGCTGCAAGTGTCGTGCAAA+AGG 0.451148 1_1:+4454622 Msa0002560:CDS
TTCAGCTGGTTTCAGAGGCA+TGG 0.452089 1_1:+4454102 Msa0002560:CDS
AAATGATTTGCCGTATATCC+TGG 0.452218 1_1:-4454770 None:intergenic
ATTCGCGTTAATGGCTATCC+AGG 0.452896 1_1:+4454752 Msa0002560:CDS
CACAAAAGCTTCATTACAGT+TGG 0.453452 1_1:-4454423 None:intergenic
CTTATTACAGATAGTCCAAA+AGG 0.455028 1_1:-4454345 None:intergenic
TGGCCACTGAGCAAGTGATT+AGG 0.456167 1_1:-4455763 None:intergenic
CAGAACCTACCCAATCTATT+GGG 0.457508 1_1:-4455372 None:intergenic
CAACTTCAAATGTGAGGTCT+GGG 0.460913 1_1:+4454267 Msa0002560:CDS
TCAAATGTACCTAGTTCAAA+TGG 0.462096 1_1:+4454221 Msa0002560:CDS
CTGATGGTTCTATGAAGAAA+AGG 0.462638 1_1:+4454717 Msa0002560:CDS
TGAGTTACGAAACATGTTGA+TGG 0.462926 1_1:+4454925 Msa0002560:CDS
AAAGATGCGGACAACTCCTC+TGG 0.465447 1_1:-4455491 None:intergenic
ATGGATTGGTATGGTATACT+TGG 0.466628 1_1:+4453975 Msa0002560:CDS
TAATCACTTGCTCAGTGGCC+AGG 0.470311 1_1:+4455765 Msa0002560:CDS
CACGACACTTGCAGCTTGAG+CGG 0.470563 1_1:-4454615 None:intergenic
GGTTCCCACTCCAGAATGGC+TGG 0.472268 1_1:+4454560 Msa0002560:CDS
AAATTTGTATGCTGATTTGG+AGG 0.472377 1_1:+4453887 Msa0002560:CDS
GAAGCTCATAACGCTCCAAT+AGG 0.472605 1_1:+4455787 Msa0002560:CDS
ATGCTTGTTACCATTAACAT+TGG 0.473523 1_1:-4455083 None:intergenic
CACAAGGTTAGGTGGACAAA+AGG 0.475228 1_1:+4455466 Msa0002560:CDS
ATATTCAATGACAAAACAAC+TGG 0.477357 1_1:+4455040 Msa0002560:CDS
CATACTACTCCAAACCGTGC+TGG 0.481237 1_1:+4454191 Msa0002560:CDS
GCTACGGGATCTGGAGCAGC+AGG 0.481387 1_1:+4454794 Msa0002560:CDS
AAGTTCCTTTGCAGAGGACC+AGG 0.482078 1_1:+4455222 Msa0002560:CDS
TGAATTCTGGTGCTGTTGAT+GGG 0.482563 1_1:-4454498 None:intergenic
GGAGTATGTTCATTCCAATC+AGG 0.487114 1_1:-4455556 None:intergenic
TGAATTGGGCCCAATAGATT+GGG 0.488808 1_1:+4455363 Msa0002560:CDS
AGGAACTTTCAGCTCTATCC+AGG 0.489052 1_1:-4455207 None:intergenic
AGGTCTAAAGGTGTAGCTGC+TGG 0.492454 1_1:-4455826 None:intergenic
ACGAAACATGTTGATGGATA+AGG 0.495669 1_1:+4454931 Msa0002560:CDS
CACGGTTTGGAGTAGTATGT+TGG 0.497106 1_1:-4454187 None:intergenic
GTCCGCATCTTTCCAGGTAA+GGG 0.498134 1_1:+4455502 Msa0002560:CDS
GATAGCAACAGAAGCTAATG+AGG 0.502266 1_1:+4455855 Msa0002560:CDS
GTCTGGGAATCATAATGCTC+GGG 0.503789 1_1:+4454283 Msa0002560:CDS
CAGAATTCACAACGTCATCC+TGG 0.504825 1_1:+4454512 Msa0002560:CDS
GGACTATCTGTAATAAGTGC+AGG 0.505271 1_1:+4454351 Msa0002560:CDS
GACAGTATTTCGAAGGCACC+AGG 0.509786 1_1:+4455681 Msa0002560:CDS
CAAAACCAGCCATTCTGGAG+TGG 0.511268 1_1:-4454565 None:intergenic
TCCAATAGGTTGCCGAGAGT+TGG 0.511728 1_1:+4455801 Msa0002560:CDS
TGTGGAGGGGCAGAAGTGGC+AGG 0.513069 1_1:-4454308 None:intergenic
CATTGATTGTAACATAGGCT+TGG 0.515798 1_1:-4455156 None:intergenic
CGAAATACTGTCCTAAAGCC+AGG 0.516363 1_1:-4455670 None:intergenic
ATACTACTCCAAACCGTGCT+GGG 0.517498 1_1:+4454192 Msa0002560:CDS
GAGCACCATCAATTGCTGAA+TGG 0.520958 1_1:+4454669 Msa0002560:CDS
AACAGTCTCTTCATCAGCAA+AGG 0.522182 1_1:-4454006 None:intergenic
AGACTGTTAGAAAGCAGTAC+AGG 0.523671 1_1:+4454021 Msa0002560:CDS
TGCATTTCAGCTGGTTTCAG+AGG 0.526061 1_1:+4454097 Msa0002560:CDS
GCTGCTTATGACGATGATGA+TGG 0.528010 1_1:+4455250 Msa0002560:CDS
TCTGCTGAGAACAAAGTAAG+TGG 0.530077 1_1:+4453948 Msa0002560:CDS
CGTCATAAGCAGCCCAGACC+TGG 0.530148 1_1:-4455240 None:intergenic
TCTTTACCTGTCACATCTGA+TGG 0.530274 1_1:+4455118 Msa0002560:CDS
TAGCTTCTGTTGCTATCTGA+AGG 0.531060 1_1:-4455849 None:intergenic
AAATTGTGAAAATCAGGATC+CGG 0.532427 1_1:-4455181 None:intergenic
TAATAATTCAAACCTTCAGT+GGG 0.534646 1_1:+4454538 Msa0002560:CDS
GAGGATTCAAATGTCTAAGA+AGG 0.536968 1_1:+4454694 Msa0002560:CDS
ACAAAAGCTTCATTACAGTT+GGG 0.539482 1_1:-4454422 None:intergenic
ACCAGGACCAGAATGAGGTT+AGG 0.540017 1_1:+4455698 Msa0002560:CDS
ACTTGTGGGGATTTCAGGAC+TGG 0.540134 1_1:+4455406 Msa0002560:CDS
ACAGAAGCTAATGAGGCAGC+AGG 0.543005 1_1:+4455862 Msa0002560:CDS
CATCAATTGCTGAATGGGAG+AGG 0.543526 1_1:+4454675 Msa0002560:CDS
GCTATCTGAAGGAGGTCTAA+AGG 0.548645 1_1:-4455838 None:intergenic
ACAGTCTCTTCATCAGCAAA+GGG 0.551588 1_1:-4454005 None:intergenic
AAGTAAGTGGAGAAATGGAT+TGG 0.558705 1_1:+4453961 Msa0002560:CDS
CCAGACCTGGTCCTCTGCAA+AGG 0.559516 1_1:-4455227 None:intergenic
TTTCTGTGGAGGGGCAGAAG+TGG 0.559602 1_1:-4454312 None:intergenic
TGATAATAACCATTTGAACT+AGG 0.560472 1_1:-4454230 None:intergenic
GGTTAGGAGGATTCCTAAAG+AGG 0.561219 1_1:+4455714 Msa0002560:CDS
CAACAAAGATGAGGCAGTCA+GGG 0.562873 1_1:+4453791 Msa0002560:CDS
GTGGGGTTCCCACTCCAGAA+TGG 0.563354 1_1:+4454556 Msa0002560:CDS
AGTGGAGAAATGGATTGGTA+TGG 0.565199 1_1:+4453966 Msa0002560:CDS
TCCGCATCTTTCCAGGTAAG+GGG 0.566183 1_1:+4455503 Msa0002560:CDS
GACTAGAATATAACCAGAAG+AGG 0.567369 1_1:+4454150 Msa0002560:CDS
GGTCTGGGAATCATAATGCT+CGG 0.568311 1_1:+4454282 Msa0002560:CDS
AACCAGAAGAGGAGTTTGAA+AGG 0.568957 1_1:+4454161 Msa0002560:CDS
AACAAGTCTTTAGGTGCAGA+GGG 0.573429 1_1:+4454074 Msa0002560:CDS
AGCTGAAAGTTCCTTTGCAG+AGG 0.574398 1_1:+4455216 Msa0002560:CDS
CAAATGTCTAAGAAGGCTGA+TGG 0.579017 1_1:+4454701 Msa0002560:CDS
GCTTTAGGACAGTATTTCGA+AGG 0.582482 1_1:+4455674 Msa0002560:CDS
ACTGTACCATCAGATGTGAC+AGG 0.585213 1_1:-4455124 None:intergenic
GGCAACAGACGACGATCCAT+CGG 0.586319 1_1:-4454594 None:intergenic
TGGAGTGGGAACCCCACTGA+AGG 0.587012 1_1:-4454550 None:intergenic
CTTCTGTTGCTATCTGAAGG+AGG 0.589865 1_1:-4455846 None:intergenic
AAACAAGTCTTTAGGTGCAG+AGG 0.591608 1_1:+4454073 Msa0002560:CDS
ATTCTGGTGCTGTTGATGGG+AGG 0.596016 1_1:-4454495 None:intergenic
CAGTTTCTCTGGATCAGGAA+AGG 0.599343 1_1:+4454823 Msa0002560:CDS
AGGACCAGAATGAGGTTAGG+AGG 0.601398 1_1:+4455701 Msa0002560:CDS
TTCTGGTGCTGTTGATGGGA+GGG 0.601651 1_1:-4454494 None:intergenic
AGTGAGAAAGTGAAGAGAGA+AGG 0.603158 1_1:+4454647 Msa0002560:CDS
GTAATAATTCAAACCTTCAG+TGG 0.605977 1_1:+4454537 Msa0002560:CDS
AAAACCAGCCATTCTGGAGT+GGG 0.608477 1_1:-4454564 None:intergenic
CCACAAAGCCATTTAGAATG+CGG 0.614075 1_1:+4455311 Msa0002560:CDS
CCGCATCTTTCCAGGTAAGG+GGG 0.621724 1_1:+4455504 Msa0002560:CDS
AAGGCACCAGGACCAGAATG+AGG 0.626567 1_1:+4455693 Msa0002560:CDS
GATGGAGTGCAACAAAGATG+AGG 0.628263 1_1:+4453782 None:intergenic
TAAAGCCAGGAAACTTAACA+AGG 0.631614 1_1:-4455657 None:intergenic
TTGGGCCCAATAGATTGGGT+AGG 0.631748 1_1:+4455367 Msa0002560:CDS
TAGCTGCTGGATCCAACTCT+CGG 0.634962 1_1:-4455813 None:intergenic
ACATGTTGATGGATAAGGCA+CGG 0.636563 1_1:+4454936 Msa0002560:CDS
TGGTTCTATGAAGAAAAGGA+AGG 0.636867 1_1:+4454721 Msa0002560:CDS
AGTCAGGGCTAAAGAAATAG+CGG 0.640488 1_1:+4453806 Msa0002560:CDS
CATTTGATGGATGCCCAGCA+CGG 0.640859 1_1:-4454205 None:intergenic
AGAATGCAACTTCAAATGTG+AGG 0.642079 1_1:+4454261 Msa0002560:CDS
GATGATTTCAGTGAAGAGCA+AGG 0.643056 1_1:+4455619 Msa0002560:CDS
AAGCCAGGAAACTTAACAAG+GGG 0.655417 1_1:-4455655 None:intergenic
AGGTGGACAAAAGGCACCAG+AGG 0.656547 1_1:+4455475 Msa0002560:CDS
AAAGCCAGGAAACTTAACAA+GGG 0.677929 1_1:-4455656 None:intergenic
GTTCCTAATCACTTGCTCAG+TGG 0.678955 1_1:+4455760 Msa0002560:CDS
ATATTATGCTAGAATTCACA+AGG 0.689430 1_1:+4455282 Msa0002560:CDS
AATAATTCAAACCTTCAGTG+GGG 0.716457 1_1:+4454539 Msa0002560:CDS
GATACACAAGTATGACATGG+TGG 0.719131 1_1:+4455588 Msa0002560:CDS
GGGCTAAAGAAATAGCGGAG+AGG 0.758438 1_1:+4453811 Msa0002560:CDS
AGTGATACACAAGTATGACA+TGG 0.781290 1_1:+4455585 Msa0002560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTTGTATGCTGATT+TGG + chr1_1:4453884-4453903 Msa0002560:CDS 20.0%
!! TTAGTAAAAAACTTGAAGAA+TGG + chr1_1:4454966-4454985 Msa0002560:CDS 20.0%
!!! ATTAAATTCATTTTCACACA+AGG + chr1_1:4455450-4455469 Msa0002560:CDS 20.0%
!!! TAAAAATTTGTATGCTGATT+TGG + chr1_1:4453884-4453903 Msa0002560:CDS 20.0%
!! TTAGTAAAAAACTTGAAGAA+TGG + chr1_1:4454966-4454985 Msa0002560:CDS 20.0%
!!! ATTAAATTCATTTTCACACA+AGG + chr1_1:4455450-4455469 Msa0002560:CDS 20.0%
!!! TTTTCTGAAAGGGAATATAT+TGG + chr1_1:4453837-4453856 Msa0002560:CDS 25.0%
! ATCAATAGTAGTCAAAAACT+GGG - chr1_1:4453919-4453938 None:intergenic 25.0%
! TATCAATAGTAGTCAAAAAC+TGG - chr1_1:4453920-4453939 None:intergenic 25.0%
! TGATAATAACCATTTGAACT+AGG - chr1_1:4454233-4454252 None:intergenic 25.0%
! TAATAATTCAAACCTTCAGT+GGG + chr1_1:4454538-4454557 Msa0002560:CDS 25.0%
! ATATTCAATGACAAAACAAC+TGG + chr1_1:4455040-4455059 Msa0002560:CDS 25.0%
! TGAATTCTAGCATAATATCT+AGG - chr1_1:4455280-4455299 None:intergenic 25.0%
! ATATTATGCTAGAATTCACA+AGG + chr1_1:4455282-4455301 Msa0002560:CDS 25.0%
!!! TCTGGTTTTTATAAAACTTG+TGG + chr1_1:4455391-4455410 Msa0002560:CDS 25.0%
!!! CTGGTTTTTATAAAACTTGT+GGG + chr1_1:4455392-4455411 Msa0002560:CDS 25.0%
!! TGGTTTTTATAAAACTTGTG+GGG + chr1_1:4455393-4455412 Msa0002560:CDS 25.0%
!!! TTTTCTGAAAGGGAATATAT+TGG + chr1_1:4453837-4453856 Msa0002560:CDS 25.0%
! ATCAATAGTAGTCAAAAACT+GGG - chr1_1:4453919-4453938 None:intergenic 25.0%
! TATCAATAGTAGTCAAAAAC+TGG - chr1_1:4453920-4453939 None:intergenic 25.0%
! TGATAATAACCATTTGAACT+AGG - chr1_1:4454233-4454252 None:intergenic 25.0%
! TAATAATTCAAACCTTCAGT+GGG + chr1_1:4454538-4454557 Msa0002560:CDS 25.0%
! ATATTCAATGACAAAACAAC+TGG + chr1_1:4455040-4455059 Msa0002560:CDS 25.0%
! TGAATTCTAGCATAATATCT+AGG - chr1_1:4455280-4455299 None:intergenic 25.0%
! ATATTATGCTAGAATTCACA+AGG + chr1_1:4455282-4455301 Msa0002560:CDS 25.0%
!!! TCTGGTTTTTATAAAACTTG+TGG + chr1_1:4455391-4455410 Msa0002560:CDS 25.0%
!!! CTGGTTTTTATAAAACTTGT+GGG + chr1_1:4455392-4455411 Msa0002560:CDS 25.0%
!! TGGTTTTTATAAAACTTGTG+GGG + chr1_1:4455393-4455412 Msa0002560:CDS 25.0%
!! AAATTTGTATGCTGATTTGG+AGG + chr1_1:4453887-4453906 Msa0002560:CDS 30.0%
!!! CTAAAGACTTGTTTTTGTCA+GGG - chr1_1:4454067-4454086 None:intergenic 30.0%
TTTGAACTAGGTACATTTGA+TGG - chr1_1:4454221-4454240 None:intergenic 30.0%
TCAAATGTACCTAGTTCAAA+TGG + chr1_1:4454221-4454240 Msa0002560:CDS 30.0%
CTTATTACAGATAGTCCAAA+AGG - chr1_1:4454348-4454367 None:intergenic 30.0%
ACAAAAGCTTCATTACAGTT+GGG - chr1_1:4454425-4454444 None:intergenic 30.0%
! CTTGATGGCTTAAAAACATT+GGG - chr1_1:4454470-4454489 None:intergenic 30.0%
! ACTTGATGGCTTAAAAACAT+TGG - chr1_1:4454471-4454490 None:intergenic 30.0%
AGGTTTGAATTATTACTTCC+AGG - chr1_1:4454533-4454552 None:intergenic 30.0%
GTAATAATTCAAACCTTCAG+TGG + chr1_1:4454537-4454556 Msa0002560:CDS 30.0%
AATAATTCAAACCTTCAGTG+GGG + chr1_1:4454539-4454558 Msa0002560:CDS 30.0%
TTGGAAAAAGAAAGGACTTA+TGG + chr1_1:4454851-4454870 Msa0002560:CDS 30.0%
GTAAAAAACTTGAAGAATGG+AGG + chr1_1:4454969-4454988 Msa0002560:CDS 30.0%
! ATGCTTGTTACCATTAACAT+TGG - chr1_1:4455086-4455105 None:intergenic 30.0%
CTATGTTACAATCAATGTTC+CGG + chr1_1:4455162-4455181 Msa0002560:CDS 30.0%
AAATTGTGAAAATCAGGATC+CGG - chr1_1:4455184-4455203 None:intergenic 30.0%
AGGTCAAAATTGTGAAAATC+AGG - chr1_1:4455190-4455209 None:intergenic 30.0%
!! TGATTTTCACAATTTTGACC+TGG + chr1_1:4455189-4455208 Msa0002560:CDS 30.0%
! ATTCATTTTCACACAAGGTT+AGG + chr1_1:4455455-4455474 Msa0002560:CDS 30.0%
!! AAATTTGTATGCTGATTTGG+AGG + chr1_1:4453887-4453906 Msa0002560:CDS 30.0%
!!! CTAAAGACTTGTTTTTGTCA+GGG - chr1_1:4454067-4454086 None:intergenic 30.0%
TTTGAACTAGGTACATTTGA+TGG - chr1_1:4454221-4454240 None:intergenic 30.0%
TCAAATGTACCTAGTTCAAA+TGG + chr1_1:4454221-4454240 Msa0002560:CDS 30.0%
CTTATTACAGATAGTCCAAA+AGG - chr1_1:4454348-4454367 None:intergenic 30.0%
ACAAAAGCTTCATTACAGTT+GGG - chr1_1:4454425-4454444 None:intergenic 30.0%
! CTTGATGGCTTAAAAACATT+GGG - chr1_1:4454470-4454489 None:intergenic 30.0%
! ACTTGATGGCTTAAAAACAT+TGG - chr1_1:4454471-4454490 None:intergenic 30.0%
AGGTTTGAATTATTACTTCC+AGG - chr1_1:4454533-4454552 None:intergenic 30.0%
GTAATAATTCAAACCTTCAG+TGG + chr1_1:4454537-4454556 Msa0002560:CDS 30.0%
AATAATTCAAACCTTCAGTG+GGG + chr1_1:4454539-4454558 Msa0002560:CDS 30.0%
TTGGAAAAAGAAAGGACTTA+TGG + chr1_1:4454851-4454870 Msa0002560:CDS 30.0%
GTAAAAAACTTGAAGAATGG+AGG + chr1_1:4454969-4454988 Msa0002560:CDS 30.0%
! ATGCTTGTTACCATTAACAT+TGG - chr1_1:4455086-4455105 None:intergenic 30.0%
CTATGTTACAATCAATGTTC+CGG + chr1_1:4455162-4455181 Msa0002560:CDS 30.0%
AAATTGTGAAAATCAGGATC+CGG - chr1_1:4455184-4455203 None:intergenic 30.0%
AGGTCAAAATTGTGAAAATC+AGG - chr1_1:4455190-4455209 None:intergenic 30.0%
!! TGATTTTCACAATTTTGACC+TGG + chr1_1:4455189-4455208 Msa0002560:CDS 30.0%
! ATTCATTTTCACACAAGGTT+AGG + chr1_1:4455455-4455474 Msa0002560:CDS 30.0%
!! GGAGAGGAAATTTTCTGAAA+GGG + chr1_1:4453827-4453846 Msa0002560:CDS 35.0%
!! TGCAAAGAAGTTTGCTATCA+AGG + chr1_1:4453860-4453879 Msa0002560:CDS 35.0%
GAACAAAGTAAGTGGAGAAA+TGG + chr1_1:4453956-4453975 Msa0002560:CDS 35.0%
AAGTAAGTGGAGAAATGGAT+TGG + chr1_1:4453961-4453980 Msa0002560:CDS 35.0%
!! ATGGATTGGTATGGTATACT+TGG + chr1_1:4453975-4453994 Msa0002560:CDS 35.0%
!!! CCTAAAGACTTGTTTTTGTC+AGG - chr1_1:4454068-4454087 None:intergenic 35.0%
CCTGACAAAAACAAGTCTTT+AGG + chr1_1:4454065-4454084 Msa0002560:CDS 35.0%
CTGGTTATATTCTAGTCTCT+TGG - chr1_1:4454147-4454166 None:intergenic 35.0%
GACTAGAATATAACCAGAAG+AGG + chr1_1:4454150-4454169 Msa0002560:CDS 35.0%
AGAATGCAACTTCAAATGTG+AGG + chr1_1:4454261-4454280 Msa0002560:CDS 35.0%
! AGAAAAAGGCTGAAACCTTT+TGG + chr1_1:4454330-4454349 Msa0002560:CDS 35.0%
CACAAAAGCTTCATTACAGT+TGG - chr1_1:4454426-4454445 None:intergenic 35.0%
! CAACTGTAATGAAGCTTTTG+TGG + chr1_1:4454424-4454443 Msa0002560:CDS 35.0%
GAGGATTCAAATGTCTAAGA+AGG + chr1_1:4454694-4454713 Msa0002560:CDS 35.0%
! CTGATGGTTCTATGAAGAAA+AGG + chr1_1:4454717-4454736 Msa0002560:CDS 35.0%
! TGGTTCTATGAAGAAAAGGA+AGG + chr1_1:4454721-4454740 Msa0002560:CDS 35.0%
TAATGGCTATCCAGGATATA+CGG + chr1_1:4454760-4454779 Msa0002560:CDS 35.0%
! AAATGATTTGCCGTATATCC+TGG - chr1_1:4454773-4454792 None:intergenic 35.0%
! TACGGCAAATCATTTTGCTA+CGG + chr1_1:4454778-4454797 Msa0002560:CDS 35.0%
AGGCTAACTTGGAAAAAGAA+AGG + chr1_1:4454843-4454862 Msa0002560:CDS 35.0%
! GAAAGGACTTATGGTTTTTC+AGG + chr1_1:4454860-4454879 Msa0002560:CDS 35.0%
!!! ACTTATGGTTTTTCAGGTCT+TGG + chr1_1:4454866-4454885 Msa0002560:CDS 35.0%
TGAGTTACGAAACATGTTGA+TGG + chr1_1:4454925-4454944 Msa0002560:CDS 35.0%
! ACGAAACATGTTGATGGATA+AGG + chr1_1:4454931-4454950 Msa0002560:CDS 35.0%
ACTTGAAGAATGGAGGTTAA+TGG + chr1_1:4454976-4454995 Msa0002560:CDS 35.0%
TATGGAGAGTCCAATGTTAA+TGG + chr1_1:4455073-4455092 Msa0002560:CDS 35.0%
! CATTGATTGTAACATAGGCT+TGG - chr1_1:4455159-4455178 None:intergenic 35.0%
! CGGAACATTGATTGTAACAT+AGG - chr1_1:4455164-4455183 None:intergenic 35.0%
CAACTAATCCGCATTCTAAA+TGG - chr1_1:4455322-4455341 None:intergenic 35.0%
!! CATTTAGAATGCGGATTAGT+TGG + chr1_1:4455320-4455339 Msa0002560:CDS 35.0%
ATAAAACTTGTGGGGATTTC+AGG + chr1_1:4455401-4455420 Msa0002560:CDS 35.0%
TACTTGTGTATCACTTCATC+TGG - chr1_1:4455580-4455599 None:intergenic 35.0%
AGTGATACACAAGTATGACA+TGG + chr1_1:4455585-4455604 Msa0002560:CDS 35.0%
AAAGCCAGGAAACTTAACAA+GGG - chr1_1:4455659-4455678 None:intergenic 35.0%
TAAAGCCAGGAAACTTAACA+AGG - chr1_1:4455660-4455679 None:intergenic 35.0%
! TTGTTAAGTTTCCTGGCTTT+AGG + chr1_1:4455659-4455678 Msa0002560:CDS 35.0%
AATCGAAACATCTCCTCTTT+AGG - chr1_1:4455730-4455749 None:intergenic 35.0%
!! GGAGAGGAAATTTTCTGAAA+GGG + chr1_1:4453827-4453846 Msa0002560:CDS 35.0%
!! TGCAAAGAAGTTTGCTATCA+AGG + chr1_1:4453860-4453879 Msa0002560:CDS 35.0%
GAACAAAGTAAGTGGAGAAA+TGG + chr1_1:4453956-4453975 Msa0002560:CDS 35.0%
AAGTAAGTGGAGAAATGGAT+TGG + chr1_1:4453961-4453980 Msa0002560:CDS 35.0%
!! ATGGATTGGTATGGTATACT+TGG + chr1_1:4453975-4453994 Msa0002560:CDS 35.0%
!!! CCTAAAGACTTGTTTTTGTC+AGG - chr1_1:4454068-4454087 None:intergenic 35.0%
CCTGACAAAAACAAGTCTTT+AGG + chr1_1:4454065-4454084 Msa0002560:CDS 35.0%
CTGGTTATATTCTAGTCTCT+TGG - chr1_1:4454147-4454166 None:intergenic 35.0%
GACTAGAATATAACCAGAAG+AGG + chr1_1:4454150-4454169 Msa0002560:CDS 35.0%
AGAATGCAACTTCAAATGTG+AGG + chr1_1:4454261-4454280 Msa0002560:CDS 35.0%
! AGAAAAAGGCTGAAACCTTT+TGG + chr1_1:4454330-4454349 Msa0002560:CDS 35.0%
CACAAAAGCTTCATTACAGT+TGG - chr1_1:4454426-4454445 None:intergenic 35.0%
! CAACTGTAATGAAGCTTTTG+TGG + chr1_1:4454424-4454443 Msa0002560:CDS 35.0%
GAGGATTCAAATGTCTAAGA+AGG + chr1_1:4454694-4454713 Msa0002560:CDS 35.0%
! CTGATGGTTCTATGAAGAAA+AGG + chr1_1:4454717-4454736 Msa0002560:CDS 35.0%
! TGGTTCTATGAAGAAAAGGA+AGG + chr1_1:4454721-4454740 Msa0002560:CDS 35.0%
TAATGGCTATCCAGGATATA+CGG + chr1_1:4454760-4454779 Msa0002560:CDS 35.0%
! AAATGATTTGCCGTATATCC+TGG - chr1_1:4454773-4454792 None:intergenic 35.0%
! TACGGCAAATCATTTTGCTA+CGG + chr1_1:4454778-4454797 Msa0002560:CDS 35.0%
AGGCTAACTTGGAAAAAGAA+AGG + chr1_1:4454843-4454862 Msa0002560:CDS 35.0%
! GAAAGGACTTATGGTTTTTC+AGG + chr1_1:4454860-4454879 Msa0002560:CDS 35.0%
!!! ACTTATGGTTTTTCAGGTCT+TGG + chr1_1:4454866-4454885 Msa0002560:CDS 35.0%
TGAGTTACGAAACATGTTGA+TGG + chr1_1:4454925-4454944 Msa0002560:CDS 35.0%
! ACGAAACATGTTGATGGATA+AGG + chr1_1:4454931-4454950 Msa0002560:CDS 35.0%
ACTTGAAGAATGGAGGTTAA+TGG + chr1_1:4454976-4454995 Msa0002560:CDS 35.0%
TATGGAGAGTCCAATGTTAA+TGG + chr1_1:4455073-4455092 Msa0002560:CDS 35.0%
! CATTGATTGTAACATAGGCT+TGG - chr1_1:4455159-4455178 None:intergenic 35.0%
! CGGAACATTGATTGTAACAT+AGG - chr1_1:4455164-4455183 None:intergenic 35.0%
CAACTAATCCGCATTCTAAA+TGG - chr1_1:4455322-4455341 None:intergenic 35.0%
!! CATTTAGAATGCGGATTAGT+TGG + chr1_1:4455320-4455339 Msa0002560:CDS 35.0%
ATAAAACTTGTGGGGATTTC+AGG + chr1_1:4455401-4455420 Msa0002560:CDS 35.0%
TACTTGTGTATCACTTCATC+TGG - chr1_1:4455580-4455599 None:intergenic 35.0%
AGTGATACACAAGTATGACA+TGG + chr1_1:4455585-4455604 Msa0002560:CDS 35.0%
AAAGCCAGGAAACTTAACAA+GGG - chr1_1:4455659-4455678 None:intergenic 35.0%
TAAAGCCAGGAAACTTAACA+AGG - chr1_1:4455660-4455679 None:intergenic 35.0%
! TTGTTAAGTTTCCTGGCTTT+AGG + chr1_1:4455659-4455678 Msa0002560:CDS 35.0%
AATCGAAACATCTCCTCTTT+AGG - chr1_1:4455730-4455749 None:intergenic 35.0%
AGTCAGGGCTAAAGAAATAG+CGG + chr1_1:4453806-4453825 Msa0002560:CDS 40.0%
! CGGAGAGGAAATTTTCTGAA+AGG + chr1_1:4453826-4453845 Msa0002560:CDS 40.0%
TCTGCTGAGAACAAAGTAAG+TGG + chr1_1:4453948-4453967 Msa0002560:CDS 40.0%
!! AGTGGAGAAATGGATTGGTA+TGG + chr1_1:4453966-4453985 Msa0002560:CDS 40.0%
ACAGTCTCTTCATCAGCAAA+GGG - chr1_1:4454008-4454027 None:intergenic 40.0%
AACAGTCTCTTCATCAGCAA+AGG - chr1_1:4454009-4454028 None:intergenic 40.0%
AGACTGTTAGAAAGCAGTAC+AGG + chr1_1:4454021-4454040 Msa0002560:CDS 40.0%
TAGAAAGCAGTACAGGAAAC+TGG + chr1_1:4454028-4454047 Msa0002560:CDS 40.0%
!!! CTTGTTTTTGTCAGGGTGAA+GGG - chr1_1:4454060-4454079 None:intergenic 40.0%
!!! ACTTGTTTTTGTCAGGGTGA+AGG - chr1_1:4454061-4454080 None:intergenic 40.0%
AAACAAGTCTTTAGGTGCAG+AGG + chr1_1:4454073-4454092 Msa0002560:CDS 40.0%
AACAAGTCTTTAGGTGCAGA+GGG + chr1_1:4454074-4454093 Msa0002560:CDS 40.0%
AACCAGAAGAGGAGTTTGAA+AGG + chr1_1:4454161-4454180 Msa0002560:CDS 40.0%
CAACTTCAAATGTGAGGTCT+GGG + chr1_1:4454267-4454286 Msa0002560:CDS 40.0%
! TTTCAGCCTTTTTCTGTGGA+GGG - chr1_1:4454325-4454344 None:intergenic 40.0%
! AAGGTTTCAGCCTTTTTCTG+TGG - chr1_1:4454329-4454348 None:intergenic 40.0%
GGACTATCTGTAATAAGTGC+AGG + chr1_1:4454351-4454370 Msa0002560:CDS 40.0%
GATGGCTTAAAAACATTGGG+AGG - chr1_1:4454467-4454486 None:intergenic 40.0%
!! TGAATTCTGGTGCTGTTGAT+GGG - chr1_1:4454501-4454520 None:intergenic 40.0%
AGTGAGAAAGTGAAGAGAGA+AGG + chr1_1:4454647-4454666 Msa0002560:CDS 40.0%
AGCACCATCAATTGCTGAAT+GGG + chr1_1:4454670-4454689 Msa0002560:CDS 40.0%
CAAATGTCTAAGAAGGCTGA+TGG + chr1_1:4454701-4454720 Msa0002560:CDS 40.0%
GCAGATGATATTCGCGTTAA+TGG + chr1_1:4454743-4454762 Msa0002560:CDS 40.0%
! ACGGCAAATCATTTTGCTAC+GGG + chr1_1:4454779-4454798 Msa0002560:CDS 40.0%
! AATCATTTTGCTACGGGATC+TGG + chr1_1:4454785-4454804 Msa0002560:CDS 40.0%
!!! TATGGTTTTTCAGGTCTTGG+AGG + chr1_1:4454869-4454888 Msa0002560:CDS 40.0%
! ACATGTTGATGGATAAGGCA+CGG + chr1_1:4454936-4454955 Msa0002560:CDS 40.0%
! ACAACTGGTTCAGAGAAGTA+TGG + chr1_1:4455055-4455074 Msa0002560:CDS 40.0%
TCTTTACCTGTCACATCTGA+TGG + chr1_1:4455118-4455137 Msa0002560:CDS 40.0%
! CCACAAAGCCATTTAGAATG+CGG + chr1_1:4455311-4455330 Msa0002560:CDS 40.0%
TCTCGAAGCAACAGTGAATT+GGG + chr1_1:4455349-4455368 Msa0002560:CDS 40.0%
TGAATTGGGCCCAATAGATT+GGG + chr1_1:4455363-4455382 Msa0002560:CDS 40.0%
CAGAACCTACCCAATCTATT+GGG - chr1_1:4455375-4455394 None:intergenic 40.0%
! CATTTTCACACAAGGTTAGG+TGG + chr1_1:4455458-4455477 Msa0002560:CDS 40.0%
TCTGGGCACTTTATAGAAAC+TGG + chr1_1:4455530-4455549 Msa0002560:CDS 40.0%
! ATAGAAACTGGTCTCCTGAT+TGG + chr1_1:4455542-4455561 Msa0002560:CDS 40.0%
GGAGTATGTTCATTCCAATC+AGG - chr1_1:4455559-4455578 None:intergenic 40.0%
GATACACAAGTATGACATGG+TGG + chr1_1:4455588-4455607 Msa0002560:CDS 40.0%
GATGATTTCAGTGAAGAGCA+AGG + chr1_1:4455619-4455638 Msa0002560:CDS 40.0%
AAGCCAGGAAACTTAACAAG+GGG - chr1_1:4455658-4455677 None:intergenic 40.0%
!! GCTTTAGGACAGTATTTCGA+AGG + chr1_1:4455674-4455693 Msa0002560:CDS 40.0%
GATGTTTCGATTCTCTCATC+AGG + chr1_1:4455738-4455757 Msa0002560:CDS 40.0%
TAGCTTCTGTTGCTATCTGA+AGG - chr1_1:4455852-4455871 None:intergenic 40.0%
GATAGCAACAGAAGCTAATG+AGG + chr1_1:4455855-4455874 Msa0002560:CDS 40.0%
AGTCAGGGCTAAAGAAATAG+CGG + chr1_1:4453806-4453825 Msa0002560:CDS 40.0%
! CGGAGAGGAAATTTTCTGAA+AGG + chr1_1:4453826-4453845 Msa0002560:CDS 40.0%
TCTGCTGAGAACAAAGTAAG+TGG + chr1_1:4453948-4453967 Msa0002560:CDS 40.0%
!! AGTGGAGAAATGGATTGGTA+TGG + chr1_1:4453966-4453985 Msa0002560:CDS 40.0%
ACAGTCTCTTCATCAGCAAA+GGG - chr1_1:4454008-4454027 None:intergenic 40.0%
AACAGTCTCTTCATCAGCAA+AGG - chr1_1:4454009-4454028 None:intergenic 40.0%
AGACTGTTAGAAAGCAGTAC+AGG + chr1_1:4454021-4454040 Msa0002560:CDS 40.0%
TAGAAAGCAGTACAGGAAAC+TGG + chr1_1:4454028-4454047 Msa0002560:CDS 40.0%
!!! CTTGTTTTTGTCAGGGTGAA+GGG - chr1_1:4454060-4454079 None:intergenic 40.0%
!!! ACTTGTTTTTGTCAGGGTGA+AGG - chr1_1:4454061-4454080 None:intergenic 40.0%
AAACAAGTCTTTAGGTGCAG+AGG + chr1_1:4454073-4454092 Msa0002560:CDS 40.0%
AACAAGTCTTTAGGTGCAGA+GGG + chr1_1:4454074-4454093 Msa0002560:CDS 40.0%
AACCAGAAGAGGAGTTTGAA+AGG + chr1_1:4454161-4454180 Msa0002560:CDS 40.0%
CAACTTCAAATGTGAGGTCT+GGG + chr1_1:4454267-4454286 Msa0002560:CDS 40.0%
! TTTCAGCCTTTTTCTGTGGA+GGG - chr1_1:4454325-4454344 None:intergenic 40.0%
! AAGGTTTCAGCCTTTTTCTG+TGG - chr1_1:4454329-4454348 None:intergenic 40.0%
GGACTATCTGTAATAAGTGC+AGG + chr1_1:4454351-4454370 Msa0002560:CDS 40.0%
GATGGCTTAAAAACATTGGG+AGG - chr1_1:4454467-4454486 None:intergenic 40.0%
!! TGAATTCTGGTGCTGTTGAT+GGG - chr1_1:4454501-4454520 None:intergenic 40.0%
AGTGAGAAAGTGAAGAGAGA+AGG + chr1_1:4454647-4454666 Msa0002560:CDS 40.0%
AGCACCATCAATTGCTGAAT+GGG + chr1_1:4454670-4454689 Msa0002560:CDS 40.0%
CAAATGTCTAAGAAGGCTGA+TGG + chr1_1:4454701-4454720 Msa0002560:CDS 40.0%
GCAGATGATATTCGCGTTAA+TGG + chr1_1:4454743-4454762 Msa0002560:CDS 40.0%
! ACGGCAAATCATTTTGCTAC+GGG + chr1_1:4454779-4454798 Msa0002560:CDS 40.0%
! AATCATTTTGCTACGGGATC+TGG + chr1_1:4454785-4454804 Msa0002560:CDS 40.0%
!!! TATGGTTTTTCAGGTCTTGG+AGG + chr1_1:4454869-4454888 Msa0002560:CDS 40.0%
! ACATGTTGATGGATAAGGCA+CGG + chr1_1:4454936-4454955 Msa0002560:CDS 40.0%
! ACAACTGGTTCAGAGAAGTA+TGG + chr1_1:4455055-4455074 Msa0002560:CDS 40.0%
TCTTTACCTGTCACATCTGA+TGG + chr1_1:4455118-4455137 Msa0002560:CDS 40.0%
! CCACAAAGCCATTTAGAATG+CGG + chr1_1:4455311-4455330 Msa0002560:CDS 40.0%
TCTCGAAGCAACAGTGAATT+GGG + chr1_1:4455349-4455368 Msa0002560:CDS 40.0%
TGAATTGGGCCCAATAGATT+GGG + chr1_1:4455363-4455382 Msa0002560:CDS 40.0%
CAGAACCTACCCAATCTATT+GGG - chr1_1:4455375-4455394 None:intergenic 40.0%
! CATTTTCACACAAGGTTAGG+TGG + chr1_1:4455458-4455477 Msa0002560:CDS 40.0%
TCTGGGCACTTTATAGAAAC+TGG + chr1_1:4455530-4455549 Msa0002560:CDS 40.0%
! ATAGAAACTGGTCTCCTGAT+TGG + chr1_1:4455542-4455561 Msa0002560:CDS 40.0%
GGAGTATGTTCATTCCAATC+AGG - chr1_1:4455559-4455578 None:intergenic 40.0%
GATACACAAGTATGACATGG+TGG + chr1_1:4455588-4455607 Msa0002560:CDS 40.0%
GATGATTTCAGTGAAGAGCA+AGG + chr1_1:4455619-4455638 Msa0002560:CDS 40.0%
AAGCCAGGAAACTTAACAAG+GGG - chr1_1:4455658-4455677 None:intergenic 40.0%
!! GCTTTAGGACAGTATTTCGA+AGG + chr1_1:4455674-4455693 Msa0002560:CDS 40.0%
GATGTTTCGATTCTCTCATC+AGG + chr1_1:4455738-4455757 Msa0002560:CDS 40.0%
TAGCTTCTGTTGCTATCTGA+AGG - chr1_1:4455852-4455871 None:intergenic 40.0%
GATAGCAACAGAAGCTAATG+AGG + chr1_1:4455855-4455874 Msa0002560:CDS 40.0%
CAACAAAGATGAGGCAGTCA+GGG + chr1_1:4453791-4453810 Msa0002560:CDS 45.0%
! TGCATTTCAGCTGGTTTCAG+AGG + chr1_1:4454097-4454116 Msa0002560:CDS 45.0%
AGCCTTTCAAACTCCTCTTC+TGG - chr1_1:4454166-4454185 None:intergenic 45.0%
! CACGGTTTGGAGTAGTATGT+TGG - chr1_1:4454190-4454209 None:intergenic 45.0%
ATACTACTCCAAACCGTGCT+GGG + chr1_1:4454192-4454211 Msa0002560:CDS 45.0%
GCAACTTCAAATGTGAGGTC+TGG + chr1_1:4454266-4454285 Msa0002560:CDS 45.0%
GGTCTGGGAATCATAATGCT+CGG + chr1_1:4454282-4454301 Msa0002560:CDS 45.0%
GTCTGGGAATCATAATGCTC+GGG + chr1_1:4454283-4454302 Msa0002560:CDS 45.0%
! TTCAGCCTTTTTCTGTGGAG+GGG - chr1_1:4454324-4454343 None:intergenic 45.0%
! GTTTCAGCCTTTTTCTGTGG+AGG - chr1_1:4454326-4454345 None:intergenic 45.0%
! AAGCTTTTGTGGCCATAGAG+AGG + chr1_1:4454435-4454454 Msa0002560:CDS 45.0%
GGCTTAAAAACATTGGGAGG+AGG - chr1_1:4454464-4454483 None:intergenic 45.0%
!! GTGAATTCTGGTGCTGTTGA+TGG - chr1_1:4454502-4454521 None:intergenic 45.0%
CAGGATGACGTTGTGAATTC+TGG - chr1_1:4454514-4454533 None:intergenic 45.0%
CAGAATTCACAACGTCATCC+TGG + chr1_1:4454512-4454531 Msa0002560:CDS 45.0%
!! AAAACCAGCCATTCTGGAGT+GGG - chr1_1:4454567-4454586 None:intergenic 45.0%
GAGCACCATCAATTGCTGAA+TGG + chr1_1:4454669-4454688 Msa0002560:CDS 45.0%
CTCTCCCATTCAGCAATTGA+TGG - chr1_1:4454677-4454696 None:intergenic 45.0%
CATCAATTGCTGAATGGGAG+AGG + chr1_1:4454675-4454694 Msa0002560:CDS 45.0%
ATTCGCGTTAATGGCTATCC+AGG + chr1_1:4454752-4454771 Msa0002560:CDS 45.0%
CAGTTTCTCTGGATCAGGAA+AGG + chr1_1:4454823-4454842 Msa0002560:CDS 45.0%
TGGATCAGGAAAGGCTAACT+TGG + chr1_1:4454832-4454851 Msa0002560:CDS 45.0%
ACTGTACCATCAGATGTGAC+AGG - chr1_1:4455127-4455146 None:intergenic 45.0%
AGGAACTTTCAGCTCTATCC+AGG - chr1_1:4455210-4455229 None:intergenic 45.0%
AGCTGAAAGTTCCTTTGCAG+AGG + chr1_1:4455216-4455235 Msa0002560:CDS 45.0%
GCTGCTTATGACGATGATGA+TGG + chr1_1:4455250-4455269 Msa0002560:CDS 45.0%
! CCGCATTCTAAATGGCTTTG+TGG - chr1_1:4455314-4455333 None:intergenic 45.0%
CTCTCGAAGCAACAGTGAAT+TGG + chr1_1:4455348-4455367 Msa0002560:CDS 45.0%
GTGAATTGGGCCCAATAGAT+TGG + chr1_1:4455362-4455381 Msa0002560:CDS 45.0%
CCAGAACCTACCCAATCTAT+TGG - chr1_1:4455376-4455395 None:intergenic 45.0%
CCAATAGATTGGGTAGGTTC+TGG + chr1_1:4455373-4455392 Msa0002560:CDS 45.0%
CACAAGGTTAGGTGGACAAA+AGG + chr1_1:4455466-4455485 Msa0002560:CDS 45.0%
ACTCCCCTTGTTAAGTTTCC+TGG + chr1_1:4455652-4455671 Msa0002560:CDS 45.0%
CGAAATACTGTCCTAAAGCC+AGG - chr1_1:4455673-4455692 None:intergenic 45.0%
GAATCCTCCTAACCTCATTC+TGG - chr1_1:4455708-4455727 None:intergenic 45.0%
GGTTAGGAGGATTCCTAAAG+AGG + chr1_1:4455714-4455733 Msa0002560:CDS 45.0%
GTTCCTAATCACTTGCTCAG+TGG + chr1_1:4455760-4455779 Msa0002560:CDS 45.0%
GAAGCTCATAACGCTCCAAT+AGG + chr1_1:4455787-4455806 Msa0002560:CDS 45.0%
GCTATCTGAAGGAGGTCTAA+AGG - chr1_1:4455841-4455860 None:intergenic 45.0%
CTTCTGTTGCTATCTGAAGG+AGG - chr1_1:4455849-4455868 None:intergenic 45.0%
CAACAAAGATGAGGCAGTCA+GGG + chr1_1:4453791-4453810 Msa0002560:CDS 45.0%
! TGCATTTCAGCTGGTTTCAG+AGG + chr1_1:4454097-4454116 Msa0002560:CDS 45.0%
AGCCTTTCAAACTCCTCTTC+TGG - chr1_1:4454166-4454185 None:intergenic 45.0%
! CACGGTTTGGAGTAGTATGT+TGG - chr1_1:4454190-4454209 None:intergenic 45.0%
ATACTACTCCAAACCGTGCT+GGG + chr1_1:4454192-4454211 Msa0002560:CDS 45.0%
GCAACTTCAAATGTGAGGTC+TGG + chr1_1:4454266-4454285 Msa0002560:CDS 45.0%
GGTCTGGGAATCATAATGCT+CGG + chr1_1:4454282-4454301 Msa0002560:CDS 45.0%
GTCTGGGAATCATAATGCTC+GGG + chr1_1:4454283-4454302 Msa0002560:CDS 45.0%
! TTCAGCCTTTTTCTGTGGAG+GGG - chr1_1:4454324-4454343 None:intergenic 45.0%
! GTTTCAGCCTTTTTCTGTGG+AGG - chr1_1:4454326-4454345 None:intergenic 45.0%
! AAGCTTTTGTGGCCATAGAG+AGG + chr1_1:4454435-4454454 Msa0002560:CDS 45.0%
GGCTTAAAAACATTGGGAGG+AGG - chr1_1:4454464-4454483 None:intergenic 45.0%
!! GTGAATTCTGGTGCTGTTGA+TGG - chr1_1:4454502-4454521 None:intergenic 45.0%
CAGGATGACGTTGTGAATTC+TGG - chr1_1:4454514-4454533 None:intergenic 45.0%
CAGAATTCACAACGTCATCC+TGG + chr1_1:4454512-4454531 Msa0002560:CDS 45.0%
!! AAAACCAGCCATTCTGGAGT+GGG - chr1_1:4454567-4454586 None:intergenic 45.0%
GAGCACCATCAATTGCTGAA+TGG + chr1_1:4454669-4454688 Msa0002560:CDS 45.0%
CTCTCCCATTCAGCAATTGA+TGG - chr1_1:4454677-4454696 None:intergenic 45.0%
CATCAATTGCTGAATGGGAG+AGG + chr1_1:4454675-4454694 Msa0002560:CDS 45.0%
ATTCGCGTTAATGGCTATCC+AGG + chr1_1:4454752-4454771 Msa0002560:CDS 45.0%
CAGTTTCTCTGGATCAGGAA+AGG + chr1_1:4454823-4454842 Msa0002560:CDS 45.0%
TGGATCAGGAAAGGCTAACT+TGG + chr1_1:4454832-4454851 Msa0002560:CDS 45.0%
ACTGTACCATCAGATGTGAC+AGG - chr1_1:4455127-4455146 None:intergenic 45.0%
AGGAACTTTCAGCTCTATCC+AGG - chr1_1:4455210-4455229 None:intergenic 45.0%
AGCTGAAAGTTCCTTTGCAG+AGG + chr1_1:4455216-4455235 Msa0002560:CDS 45.0%
GCTGCTTATGACGATGATGA+TGG + chr1_1:4455250-4455269 Msa0002560:CDS 45.0%
! CCGCATTCTAAATGGCTTTG+TGG - chr1_1:4455314-4455333 None:intergenic 45.0%
CTCTCGAAGCAACAGTGAAT+TGG + chr1_1:4455348-4455367 Msa0002560:CDS 45.0%
GTGAATTGGGCCCAATAGAT+TGG + chr1_1:4455362-4455381 Msa0002560:CDS 45.0%
CCAGAACCTACCCAATCTAT+TGG - chr1_1:4455376-4455395 None:intergenic 45.0%
CCAATAGATTGGGTAGGTTC+TGG + chr1_1:4455373-4455392 Msa0002560:CDS 45.0%
CACAAGGTTAGGTGGACAAA+AGG + chr1_1:4455466-4455485 Msa0002560:CDS 45.0%
ACTCCCCTTGTTAAGTTTCC+TGG + chr1_1:4455652-4455671 Msa0002560:CDS 45.0%
CGAAATACTGTCCTAAAGCC+AGG - chr1_1:4455673-4455692 None:intergenic 45.0%
GAATCCTCCTAACCTCATTC+TGG - chr1_1:4455708-4455727 None:intergenic 45.0%
GGTTAGGAGGATTCCTAAAG+AGG + chr1_1:4455714-4455733 Msa0002560:CDS 45.0%
GTTCCTAATCACTTGCTCAG+TGG + chr1_1:4455760-4455779 Msa0002560:CDS 45.0%
GAAGCTCATAACGCTCCAAT+AGG + chr1_1:4455787-4455806 Msa0002560:CDS 45.0%
GCTATCTGAAGGAGGTCTAA+AGG - chr1_1:4455841-4455860 None:intergenic 45.0%
CTTCTGTTGCTATCTGAAGG+AGG - chr1_1:4455849-4455868 None:intergenic 45.0%
GCAACAAAGATGAGGCAGTC+AGG + chr1_1:4453790-4453809 Msa0002560:CDS 50.0%
! GGGCTAAAGAAATAGCGGAG+AGG + chr1_1:4453811-4453830 Msa0002560:CDS 50.0%
! TTCAGCTGGTTTCAGAGGCA+TGG + chr1_1:4454102-4454121 Msa0002560:CDS 50.0%
CATACTACTCCAAACCGTGC+TGG + chr1_1:4454191-4454210 Msa0002560:CDS 50.0%
! CATTTGATGGATGCCCAGCA+CGG - chr1_1:4454208-4454227 None:intergenic 50.0%
TTCTGCCCCTCCACAGAAAA+AGG + chr1_1:4454316-4454335 Msa0002560:CDS 50.0%
TGATGGGAGGGCAAACTTGA+TGG - chr1_1:4454485-4454504 None:intergenic 50.0%
!! TTCTGGTGCTGTTGATGGGA+GGG - chr1_1:4454497-4454516 None:intergenic 50.0%
!! ATTCTGGTGCTGTTGATGGG+AGG - chr1_1:4454498-4454517 None:intergenic 50.0%
! CAAAACCAGCCATTCTGGAG+TGG - chr1_1:4454568-4454587 None:intergenic 50.0%
!!! CACTCCAGAATGGCTGGTTT+TGG + chr1_1:4454566-4454585 Msa0002560:CDS 50.0%
GCTACCAAAACCAGCCATTC+TGG - chr1_1:4454573-4454592 None:intergenic 50.0%
! AGCTGCAAGTGTCGTGCAAA+AGG + chr1_1:4454622-4454641 Msa0002560:CDS 50.0%
TTGGGCAGTTTCTCTGGATC+AGG + chr1_1:4454818-4454837 Msa0002560:CDS 50.0%
AAGTTCCTTTGCAGAGGACC+AGG + chr1_1:4455222-4455241 Msa0002560:CDS 50.0%
TTGGGCCCAATAGATTGGGT+AGG + chr1_1:4455367-4455386 Msa0002560:CDS 50.0%
ACTTGTGGGGATTTCAGGAC+TGG + chr1_1:4455406-4455425 Msa0002560:CDS 50.0%
AAAGATGCGGACAACTCCTC+TGG - chr1_1:4455494-4455513 None:intergenic 50.0%
TGTCCGCATCTTTCCAGGTA+AGG + chr1_1:4455501-4455520 Msa0002560:CDS 50.0%
GTCCGCATCTTTCCAGGTAA+GGG + chr1_1:4455502-4455521 Msa0002560:CDS 50.0%
TCCGCATCTTTCCAGGTAAG+GGG + chr1_1:4455503-4455522 Msa0002560:CDS 50.0%
!! GACAGTATTTCGAAGGCACC+AGG + chr1_1:4455681-4455700 Msa0002560:CDS 50.0%
ACCAGGACCAGAATGAGGTT+AGG + chr1_1:4455698-4455717 Msa0002560:CDS 50.0%
TCCTAACCTCATTCTGGTCC+TGG - chr1_1:4455702-4455721 None:intergenic 50.0%
AGGACCAGAATGAGGTTAGG+AGG + chr1_1:4455701-4455720 Msa0002560:CDS 50.0%
TGGCCACTGAGCAAGTGATT+AGG - chr1_1:4455766-4455785 None:intergenic 50.0%
TAATCACTTGCTCAGTGGCC+AGG + chr1_1:4455765-4455784 Msa0002560:CDS 50.0%
! TTGGAGCGTTATGAGCTTCC+TGG - chr1_1:4455786-4455805 None:intergenic 50.0%
TCCAATAGGTTGCCGAGAGT+TGG + chr1_1:4455801-4455820 Msa0002560:CDS 50.0%
TCCAACTCTCGGCAACCTAT+TGG - chr1_1:4455805-4455824 None:intergenic 50.0%
TAGCTGCTGGATCCAACTCT+CGG - chr1_1:4455816-4455835 None:intergenic 50.0%
! AGGTCTAAAGGTGTAGCTGC+TGG - chr1_1:4455829-4455848 None:intergenic 50.0%
ACAGAAGCTAATGAGGCAGC+AGG + chr1_1:4455862-4455881 Msa0002560:CDS 50.0%
GCAACAAAGATGAGGCAGTC+AGG + chr1_1:4453790-4453809 Msa0002560:CDS 50.0%
! GGGCTAAAGAAATAGCGGAG+AGG + chr1_1:4453811-4453830 Msa0002560:CDS 50.0%
! TTCAGCTGGTTTCAGAGGCA+TGG + chr1_1:4454102-4454121 Msa0002560:CDS 50.0%
CATACTACTCCAAACCGTGC+TGG + chr1_1:4454191-4454210 Msa0002560:CDS 50.0%
! CATTTGATGGATGCCCAGCA+CGG - chr1_1:4454208-4454227 None:intergenic 50.0%
TTCTGCCCCTCCACAGAAAA+AGG + chr1_1:4454316-4454335 Msa0002560:CDS 50.0%
TGATGGGAGGGCAAACTTGA+TGG - chr1_1:4454485-4454504 None:intergenic 50.0%
!! TTCTGGTGCTGTTGATGGGA+GGG - chr1_1:4454497-4454516 None:intergenic 50.0%
!! ATTCTGGTGCTGTTGATGGG+AGG - chr1_1:4454498-4454517 None:intergenic 50.0%
! CAAAACCAGCCATTCTGGAG+TGG - chr1_1:4454568-4454587 None:intergenic 50.0%
!!! CACTCCAGAATGGCTGGTTT+TGG + chr1_1:4454566-4454585 Msa0002560:CDS 50.0%
GCTACCAAAACCAGCCATTC+TGG - chr1_1:4454573-4454592 None:intergenic 50.0%
! AGCTGCAAGTGTCGTGCAAA+AGG + chr1_1:4454622-4454641 Msa0002560:CDS 50.0%
TTGGGCAGTTTCTCTGGATC+AGG + chr1_1:4454818-4454837 Msa0002560:CDS 50.0%
AAGTTCCTTTGCAGAGGACC+AGG + chr1_1:4455222-4455241 Msa0002560:CDS 50.0%
TTGGGCCCAATAGATTGGGT+AGG + chr1_1:4455367-4455386 Msa0002560:CDS 50.0%
ACTTGTGGGGATTTCAGGAC+TGG + chr1_1:4455406-4455425 Msa0002560:CDS 50.0%
AAAGATGCGGACAACTCCTC+TGG - chr1_1:4455494-4455513 None:intergenic 50.0%
TGTCCGCATCTTTCCAGGTA+AGG + chr1_1:4455501-4455520 Msa0002560:CDS 50.0%
GTCCGCATCTTTCCAGGTAA+GGG + chr1_1:4455502-4455521 Msa0002560:CDS 50.0%
TCCGCATCTTTCCAGGTAAG+GGG + chr1_1:4455503-4455522 Msa0002560:CDS 50.0%
!! GACAGTATTTCGAAGGCACC+AGG + chr1_1:4455681-4455700 Msa0002560:CDS 50.0%
ACCAGGACCAGAATGAGGTT+AGG + chr1_1:4455698-4455717 Msa0002560:CDS 50.0%
TCCTAACCTCATTCTGGTCC+TGG - chr1_1:4455702-4455721 None:intergenic 50.0%
AGGACCAGAATGAGGTTAGG+AGG + chr1_1:4455701-4455720 Msa0002560:CDS 50.0%
TGGCCACTGAGCAAGTGATT+AGG - chr1_1:4455766-4455785 None:intergenic 50.0%
TAATCACTTGCTCAGTGGCC+AGG + chr1_1:4455765-4455784 Msa0002560:CDS 50.0%
! TTGGAGCGTTATGAGCTTCC+TGG - chr1_1:4455786-4455805 None:intergenic 50.0%
TCCAATAGGTTGCCGAGAGT+TGG + chr1_1:4455801-4455820 Msa0002560:CDS 50.0%
TCCAACTCTCGGCAACCTAT+TGG - chr1_1:4455805-4455824 None:intergenic 50.0%
TAGCTGCTGGATCCAACTCT+CGG - chr1_1:4455816-4455835 None:intergenic 50.0%
! AGGTCTAAAGGTGTAGCTGC+TGG - chr1_1:4455829-4455848 None:intergenic 50.0%
ACAGAAGCTAATGAGGCAGC+AGG + chr1_1:4455862-4455881 Msa0002560:CDS 50.0%
! TGCAGAGGGTGCATTTCAGC+TGG + chr1_1:4454088-4454107 Msa0002560:CDS 55.0%
TTTCTGTGGAGGGGCAGAAG+TGG - chr1_1:4454315-4454334 None:intergenic 55.0%
!!! GCTGGTTTTGGTAGCACCGA+TGG + chr1_1:4454578-4454597 Msa0002560:CDS 55.0%
GGCAACAGACGACGATCCAT+CGG - chr1_1:4454597-4454616 None:intergenic 55.0%
CACGACACTTGCAGCTTGAG+CGG - chr1_1:4454618-4454637 None:intergenic 55.0%
! GGATCTGGAGCAGCAGGTTT+GGG + chr1_1:4454800-4454819 Msa0002560:CDS 55.0%
GCAGGTTTGGGCAGTTTCTC+TGG + chr1_1:4454812-4454831 Msa0002560:CDS 55.0%
CTTTGCAGAGGACCAGGTCT+GGG + chr1_1:4455228-4455247 Msa0002560:CDS 55.0%
!! AGGTGGACAAAAGGCACCAG+AGG + chr1_1:4455475-4455494 Msa0002560:CDS 55.0%
GGAGTTGTCCGCATCTTTCC+AGG + chr1_1:4455496-4455515 Msa0002560:CDS 55.0%
CCCCCTTACCTGGAAAGATG+CGG - chr1_1:4455507-4455526 None:intergenic 55.0%
CCGCATCTTTCCAGGTAAGG+GGG + chr1_1:4455504-4455523 Msa0002560:CDS 55.0%
TTCCAGGTAAGGGGGAAGTC+TGG + chr1_1:4455512-4455531 Msa0002560:CDS 55.0%
TCCAGGTAAGGGGGAAGTCT+GGG + chr1_1:4455513-4455532 Msa0002560:CDS 55.0%
! AAGGCACCAGGACCAGAATG+AGG + chr1_1:4455693-4455712 Msa0002560:CDS 55.0%
! TGCAGAGGGTGCATTTCAGC+TGG + chr1_1:4454088-4454107 Msa0002560:CDS 55.0%
TTTCTGTGGAGGGGCAGAAG+TGG - chr1_1:4454315-4454334 None:intergenic 55.0%
!!! GCTGGTTTTGGTAGCACCGA+TGG + chr1_1:4454578-4454597 Msa0002560:CDS 55.0%
GGCAACAGACGACGATCCAT+CGG - chr1_1:4454597-4454616 None:intergenic 55.0%
CACGACACTTGCAGCTTGAG+CGG - chr1_1:4454618-4454637 None:intergenic 55.0%
! GGATCTGGAGCAGCAGGTTT+GGG + chr1_1:4454800-4454819 Msa0002560:CDS 55.0%
GCAGGTTTGGGCAGTTTCTC+TGG + chr1_1:4454812-4454831 Msa0002560:CDS 55.0%
CTTTGCAGAGGACCAGGTCT+GGG + chr1_1:4455228-4455247 Msa0002560:CDS 55.0%
!! AGGTGGACAAAAGGCACCAG+AGG + chr1_1:4455475-4455494 Msa0002560:CDS 55.0%
GGAGTTGTCCGCATCTTTCC+AGG + chr1_1:4455496-4455515 Msa0002560:CDS 55.0%
CCCCCTTACCTGGAAAGATG+CGG - chr1_1:4455507-4455526 None:intergenic 55.0%
CCGCATCTTTCCAGGTAAGG+GGG + chr1_1:4455504-4455523 Msa0002560:CDS 55.0%
TTCCAGGTAAGGGGGAAGTC+TGG + chr1_1:4455512-4455531 Msa0002560:CDS 55.0%
TCCAGGTAAGGGGGAAGTCT+GGG + chr1_1:4455513-4455532 Msa0002560:CDS 55.0%
! AAGGCACCAGGACCAGAATG+AGG + chr1_1:4455693-4455712 Msa0002560:CDS 55.0%
GATGGATGCCCAGCACGGTT+TGG - chr1_1:4454203-4454222 None:intergenic 60.0%
GGGAGGAGGACTCCTCTCTA+TGG - chr1_1:4454450-4454469 None:intergenic 60.0%
TGGAGTGGGAACCCCACTGA+AGG - chr1_1:4454553-4454572 None:intergenic 60.0%
GTGGGGTTCCCACTCCAGAA+TGG + chr1_1:4454556-4454575 Msa0002560:CDS 60.0%
GGTTCCCACTCCAGAATGGC+TGG + chr1_1:4454560-4454579 Msa0002560:CDS 60.0%
! GGGATCTGGAGCAGCAGGTT+TGG + chr1_1:4454799-4454818 Msa0002560:CDS 60.0%
CCAGACCTGGTCCTCTGCAA+AGG - chr1_1:4455230-4455249 None:intergenic 60.0%
CCTTTGCAGAGGACCAGGTC+TGG + chr1_1:4455227-4455246 Msa0002560:CDS 60.0%
CGTCATAAGCAGCCCAGACC+TGG - chr1_1:4455243-4455262 None:intergenic 60.0%
GATGGATGCCCAGCACGGTT+TGG - chr1_1:4454203-4454222 None:intergenic 60.0%
GGGAGGAGGACTCCTCTCTA+TGG - chr1_1:4454450-4454469 None:intergenic 60.0%
TGGAGTGGGAACCCCACTGA+AGG - chr1_1:4454553-4454572 None:intergenic 60.0%
GTGGGGTTCCCACTCCAGAA+TGG + chr1_1:4454556-4454575 Msa0002560:CDS 60.0%
GGTTCCCACTCCAGAATGGC+TGG + chr1_1:4454560-4454579 Msa0002560:CDS 60.0%
! GGGATCTGGAGCAGCAGGTT+TGG + chr1_1:4454799-4454818 Msa0002560:CDS 60.0%
CCAGACCTGGTCCTCTGCAA+AGG - chr1_1:4455230-4455249 None:intergenic 60.0%
CCTTTGCAGAGGACCAGGTC+TGG + chr1_1:4455227-4455246 Msa0002560:CDS 60.0%
CGTCATAAGCAGCCCAGACC+TGG - chr1_1:4455243-4455262 None:intergenic 60.0%
TGTGGAGGGGCAGAAGTGGC+AGG - chr1_1:4454311-4454330 None:intergenic 65.0%
! GCTACGGGATCTGGAGCAGC+AGG + chr1_1:4454794-4454813 Msa0002560:CDS 65.0%
GCCCAGACTTCCCCCTTACC+TGG - chr1_1:4455517-4455536 None:intergenic 65.0%
TGTGGAGGGGCAGAAGTGGC+AGG - chr1_1:4454311-4454330 None:intergenic 65.0%
! GCTACGGGATCTGGAGCAGC+AGG + chr1_1:4454794-4454813 Msa0002560:CDS 65.0%
GCCCAGACTTCCCCCTTACC+TGG - chr1_1:4455517-4455536 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 4453783 4455894 4453783 ID=Msa0002560;Name=Msa0002560
chr1_1 mRNA 4453783 4455894 4453783 ID=Msa0002560-mRNA-1;Parent=Msa0002560;Name=Msa0002560-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|-1|0|1|-1|1|1|0|703
chr1_1 exon 4453783 4455894 4453783 ID=Msa0002560-mRNA-1:exon:1404;Parent=Msa0002560-mRNA-1
chr1_1 CDS 4453783 4455894 4453783 ID=Msa0002560-mRNA-1:cds;Parent=Msa0002560-mRNA-1
Gene Sequence

>Msa0002560

ATGGAGTGCAACAAAGATGAGGCAGTCAGGGCTAAAGAAATAGCGGAGAGGAAATTTTCTGAAAGGGAATATATTGGTGCAAAGAAGTTTGCTATCAAGGCTAAAAATTTGTATGCTGATTTGGAGGATATTTCCCAGTTTTTGACTACTATTGATATTTATATATCTGCTGAGAACAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGTCCCTTTGCTGATGAAGAGACTGTTAGAAAGCAGTACAGGAAACTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTCAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGTTTGAAAGGCTTCCAACATACTACTCCAAACCGTGCTGGGCATCCATCAAATGTACCTAGTTCAAATGGTTATTATCATTTTAAGAAGAATGCAACTTCAAATGTGAGGTCTGGGAATCATAATGCTCGGGCTCCTGCCACTTCTGCCCCTCCACAGAAAAAGGCTGAAACCTTTTGGACTATCTGTAATAAGTGCAGGACACATTATGAATATCTCAGAGTTTATTTGAATCACACTCTTCTATGTCCCAACTGTAATGAAGCTTTTGTGGCCATAGAGAGGAGTCCTCCTCCCAATGTTTTTAAGCCATCAAGTTTGCCCTCCCATCAACAGCACCAGAATTCACAACGTCATCCTGGAAGTAATAATTCAAACCTTCAGTGGGGTTCCCACTCCAGAATGGCTGGTTTTGGTAGCACCGATGGATCGTCGTCTGTTGCCGCTCAAGCTGCAAGTGTCGTGCAAAAGGCAAGTGAGAAAGTGAAGAGAGAAGGAGCACCATCAATTGCTGAATGGGAGAGGATTCAAATGTCTAAGAAGGCTGATGGTTCTATGAAGAAAAGGAAGGCAGATGATATTCGCGTTAATGGCTATCCAGGATATACGGCAAATCATTTTGCTACGGGATCTGGAGCAGCAGGTTTGGGCAGTTTCTCTGGATCAGGAAAGGCTAACTTGGAAAAAGAAAGGACTTATGGTTTTTCAGGTCTTGGAGGCAAACATTACAGCATACGAGAGTTGTCATTGTTTGAGTTACGAAACATGTTGATGGATAAGGCACGGAATGAAATTAGTAAAAAACTTGAAGAATGGAGGTTAATGGCTGAAGCTAAGATTGTCAACAAGAATAAGAGACAGAAAAACATATTCAATGACAAAACAACTGGTTCAGAGAAGTATGGAGAGTCCAATGTTAATGGTAACAAGCATTTTTCTGTTGATTCTTTACCTGTCACATCTGATGGTACAGTTAAGAAGAGCCAAGCCTATGTTACAATCAATGTTCCGGATCCTGATTTTCACAATTTTGACCTGGATAGAGCTGAAAGTTCCTTTGCAGAGGACCAGGTCTGGGCTGCTTATGACGATGATGATGGAATGCCTAGATATTATGCTAGAATTCACAAGGTGATCTCCACAAAGCCATTTAGAATGCGGATTAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTAGGTTCTGGTTTTTATAAAACTTGTGGGGATTTCAGGACTGGCAAGCATGAAGTATCTGAATCATTAAATTCATTTTCACACAAGGTTAGGTGGACAAAAGGCACCAGAGGAGTTGTCCGCATCTTTCCAGGTAAGGGGGAAGTCTGGGCACTTTATAGAAACTGGTCTCCTGATTGGAATGAACATACTCCAGATGAAGTGATACACAAGTATGACATGGTGGAAGTGCTTGATGATTTCAGTGAAGAGCAAGGTATATTAGTTACTCCCCTTGTTAAGTTTCCTGGCTTTAGGACAGTATTTCGAAGGCACCAGGACCAGAATGAGGTTAGGAGGATTCCTAAAGAGGAGATGTTTCGATTCTCTCATCAGGTTCCTAATCACTTGCTCAGTGGCCAGGAAGCTCATAACGCTCCAATAGGTTGCCGAGAGTTGGATCCAGCAGCTACACCTTTAGACCTCCTTCAGATAGCAACAGAAGCTAATGAGGCAGCAGGTAATGTTTAG

Protein sequence

>Msa0002560

MECNKDEAVRAKEIAERKFSEREYIGAKKFAIKAKNLYADLEDISQFLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFQLVSEAWSLLSDKTKRLEYNQKRSLKGFQHTTPNRAGHPSNVPSSNGYYHFKKNATSNVRSGNHNARAPATSAPPQKKAETFWTICNKCRTHYEYLRVYLNHTLLCPNCNEAFVAIERSPPPNVFKPSSLPSHQQHQNSQRHPGSNNSNLQWGSHSRMAGFGSTDGSSSVAAQAASVVQKASEKVKREGAPSIAEWERIQMSKKADGSMKKRKADDIRVNGYPGYTANHFATGSGAAGLGSFSGSGKANLEKERTYGFSGLGGKHYSIRELSLFELRNMLMDKARNEISKKLEEWRLMAEAKIVNKNKRQKNIFNDKTTGSEKYGESNVNGNKHFSVDSLPVTSDGTVKKSQAYVTINVPDPDFHNFDLDRAESSFAEDQVWAAYDDDDGMPRYYARIHKVISTKPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEVSESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLDDFSEEQGILVTPLVKFPGFRTVFRRHQDQNEVRRIPKEEMFRFSHQVPNHLLSGQEAHNAPIGCRELDPAATPLDLLQIATEANEAAGNV*