AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190970 MtrunA17_Chr8g0360351 96.809 282 9 0 1 282 1 282 0.0 560
Msa1190970 MtrunA17_Chr2g0317021 79.505 283 57 1 1 282 51 333 4.35e-165 461
Msa1190970 MtrunA17_Chr4g0050381 65.038 266 92 1 16 281 12 276 6.65e-121 347
Msa1190970 MtrunA17_Chr2g0279151 61.255 271 104 1 11 281 11 280 1.48e-113 328
Msa1190970 MtrunA17_Chr5g0426141 61.887 265 100 1 18 282 19 282 4.67e-112 325
Msa1190970 MtrunA17_Chr3g0115851 59.480 269 108 1 15 282 14 282 1.54e-111 323
Msa1190970 MtrunA17_Chr4g0051661 56.705 261 112 1 21 281 138 397 1.56e-101 302
Msa1190970 MtrunA17_Chr1g0212961 43.233 266 138 7 22 281 79 337 2.41e-65 207
Msa1190970 MtrunA17_Chr1g0150451 43.369 279 142 7 14 281 50 323 2.13e-64 205
Msa1190970 MtrunA17_Chr3g0136711 44.528 265 139 6 20 281 21 280 1.01e-63 202
Msa1190970 MtrunA17_Chr3g0126511 40.784 255 144 5 31 282 91 341 1.11e-54 181
Msa1190970 MtrunA17_Chr3g0105371 37.838 259 143 8 36 282 87 339 1.04e-39 141
Msa1190970 MtrunA17_Chr1g0187481 34.766 256 141 6 33 281 41 277 1.07e-39 139
Msa1190970 MtrunA17_Chr5g0430481 37.354 257 145 7 35 281 124 374 2.08e-39 141
Msa1190970 MtrunA17_Chr1g0166481 37.891 256 129 6 33 281 41 273 9.91e-39 137
Msa1190970 MtrunA17_Chr3g0105351 37.452 259 144 8 36 282 63 315 1.57e-38 137
Msa1190970 MtrunA17_Chr4g0065141 34.016 244 138 6 56 282 114 351 1.13e-34 129
Msa1190970 MtrunA17_Chr5g0407161 33.624 229 134 6 65 281 123 345 2.01e-31 120
Msa1190970 MtrunA17_Chr1g0171571 35.223 247 143 7 47 279 399 642 2.88e-30 119
Msa1190970 MtrunA17_Chr4g0070871 35.039 254 120 8 66 279 253 501 3.16e-30 118
Msa1190970 MtrunA17_Chr3g0112291 34.559 272 135 7 48 279 105 373 5.03e-30 116
Msa1190970 MtrunA17_Chr3g0138281 33.610 241 138 7 57 282 113 346 1.06e-29 115
Msa1190970 MtrunA17_Chr3g0135961 34.375 256 122 7 66 279 286 537 1.48e-29 117
Msa1190970 MtrunA17_Chr5g0396731 34.440 241 120 9 34 249 72 299 7.22e-29 112
Msa1190970 MtrunA17_Chr2g0293811 31.780 236 133 8 66 279 100 329 7.91e-29 112
Msa1190970 MtrunA17_Chr6g0483411 32.222 270 145 11 45 281 54 318 2.04e-28 110
Msa1190970 MtrunA17_Chr8g0389921 33.613 238 131 6 66 279 198 432 2.26e-28 112
Msa1190970 MtrunA17_Chr2g0299981 31.343 335 154 13 17 279 203 533 1.34e-26 108
Msa1190970 MtrunA17_Chr1g0194191 30.380 237 137 9 65 279 117 347 2.02e-26 106
Msa1190970 MtrunA17_Chr5g0435721 35.319 235 125 8 35 249 193 420 2.11e-26 107
Msa1190970 MtrunA17_Chr3g0144111 32.895 228 114 8 66 281 27 227 4.10e-26 103
Msa1190970 MtrunA17_Chr1g0150781 33.725 255 125 8 66 279 290 541 4.20e-25 104
Msa1190970 MtrunA17_Chr1g0158781 35.938 256 137 8 48 279 125 377 6.17e-25 102
Msa1190970 MtrunA17_Chr1g0192421 32.624 282 132 13 52 282 77 351 6.07e-24 99.4
Msa1190970 MtrunA17_Chr3g0127091 29.278 263 127 9 68 278 91 346 7.90e-24 99.8
Msa1190970 MtrunA17_Chr1g0150071 26.959 319 154 12 32 281 21 329 6.12e-23 96.7
Msa1190970 MtrunA17_Chr7g0256771 27.304 293 155 10 19 262 26 309 1.34e-22 95.1
Msa1190970 MtrunA17_Chr7g0271971 31.780 236 131 10 66 279 68 295 2.15e-21 93.2
Msa1190970 MtrunA17_Chr2g0295401 32.588 313 151 19 22 282 50 354 2.95e-21 92.0
Msa1190970 MtrunA17_Chr7g0225501 35.294 238 128 13 64 279 84 317 4.69e-21 92.4
Msa1190970 MtrunA17_Chr1g0211251 27.612 268 141 8 31 250 42 304 5.26e-21 91.7
Msa1190970 MtrunA17_Chr7g0272061 30.741 270 130 12 69 282 94 362 1.70e-20 90.1
Msa1190970 MtrunA17_Chr7g0263281 25.545 321 168 10 29 282 30 346 2.91e-20 89.4
Msa1190970 MtrunA17_Chr4g0001761 34.857 175 89 5 126 281 160 328 9.98e-20 87.8
Msa1190970 MtrunA17_Chr3g0136811 25.606 289 141 8 61 281 47 329 1.08e-19 87.8
Msa1190970 MtrunA17_Chr4g0067711 37.705 183 88 11 124 282 173 353 1.45e-19 87.4
Msa1190970 MtrunA17_Chr4g0063111 28.058 278 147 12 39 275 51 316 2.17e-19 87.8
Msa1190970 MtrunA17_Chr1g0153671 28.966 290 167 12 10 279 22 292 3.04e-19 87.0
Msa1190970 MtrunA17_Chr1g0192471 27.897 233 144 7 66 279 68 295 4.52e-19 86.3
Msa1190970 MtrunA17_Chr3g0133801 29.915 234 138 10 66 279 66 293 1.44e-18 85.1
Msa1190970 MtrunA17_Chr1g0209451 27.451 255 156 10 49 279 46 295 1.90e-18 84.7
Msa1190970 MtrunA17_Chr1g0213351 27.336 289 150 11 29 266 39 318 3.78e-18 83.6
Msa1190970 MtrunA17_Chr7g0250061 26.667 285 153 11 31 266 37 314 5.92e-18 82.8
Msa1190970 MtrunA17_Chr1g0181901 26.766 269 146 10 29 250 35 299 8.36e-18 82.8
Msa1190970 MtrunA17_Chr8g0371321 27.143 280 145 10 31 259 40 311 8.54e-18 82.4
Msa1190970 MtrunA17_Chr7g0256751 27.864 323 153 12 29 281 35 347 1.25e-17 82.4
Msa1190970 MtrunA17_Chr4g0066371 27.059 255 145 9 66 280 86 339 1.48e-17 82.0
Msa1190970 MtrunA17_Chr8g0342431 37.791 172 84 8 133 282 203 373 6.22e-17 80.1
Msa1190970 MtrunA17_Chr7g0243571 37.179 156 82 6 126 266 188 342 7.44e-17 80.1
Msa1190970 MtrunA17_Chr7g0221691 37.576 165 69 7 126 266 232 386 8.06e-17 80.1
Msa1190970 MtrunA17_Chr3g0089721 27.778 306 166 12 6 266 11 306 2.04e-16 78.6
Msa1190970 MtrunA17_Chr4g0004971 38.608 158 80 7 125 266 165 321 2.13e-16 78.2
Msa1190970 MtrunA17_Chr3g0089711 27.778 306 166 12 6 266 11 306 2.28e-16 78.2
Msa1190970 MtrunA17_Chr7g0249421 33.854 192 109 7 92 266 172 362 2.40e-16 78.6
Msa1190970 MtrunA17_Chr1g0207571 27.018 285 152 11 29 267 28 302 9.53e-16 76.6
Msa1190970 MtrunA17_Chr4g0022171 35.028 177 97 8 106 265 172 347 3.17e-15 75.5
Msa1190970 MtrunA17_Chr2g0324061 35.294 187 100 8 96 265 158 340 1.75e-14 73.2
Msa1190970 MtrunA17_Chr4g0063051 28.916 249 145 10 37 266 35 270 5.28e-14 71.2
Msa1190970 MtrunA17_Chr2g0294291 26.596 282 156 12 29 267 42 315 2.37e-13 69.3
Msa1190970 MtrunA17_Chr4g0068971 32.090 134 64 4 173 279 96 229 5.67e-13 67.4
Msa1190970 MtrunA17_Chr1g0175381 25.000 316 161 12 29 279 46 350 6.00e-13 68.2
Msa1190970 MtrunA17_Chr2g0295991 25.625 320 133 11 60 279 160 474 1.19e-12 67.8
Msa1190970 MtrunA17_Chr1g0151781 34.247 146 64 6 126 248 152 288 1.41e-12 67.0
Msa1190970 MtrunA17_Chr7g0238501 25.694 288 150 10 33 267 235 511 3.28e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190970 AT3G15260.2 74.740 289 66 2 1 282 1 289 2.01e-159 445
Msa1190970 AT3G15260.1 74.740 289 66 2 1 282 1 289 2.01e-159 445
Msa1190970 AT4G28400.1 67.138 283 92 1 1 282 1 283 1.90e-140 397
Msa1190970 AT4G28400.3 68.846 260 81 0 23 282 2 261 6.17e-135 382
Msa1190970 AT2G20630.1 63.121 282 101 1 1 282 1 279 7.66e-132 375
Msa1190970 AT2G20630.2 62.633 281 102 1 1 281 1 278 4.14e-129 369
Msa1190970 AT4G28400.2 66.109 239 80 1 1 238 1 239 2.19e-114 330
Msa1190970 AT1G22280.1 61.200 250 97 0 33 282 32 281 1.57e-112 326
Msa1190970 AT1G34750.2 59.480 269 108 1 14 282 15 282 3.11e-111 323
Msa1190970 AT1G34750.1 59.480 269 108 1 14 282 15 282 3.11e-111 323
Msa1190970 AT1G34750.3 59.480 269 108 1 14 282 15 282 3.11e-111 323
Msa1190970 AT1G22280.3 59.766 256 97 1 33 282 32 287 3.78e-110 320
Msa1190970 AT1G78200.1 54.945 273 119 3 13 282 12 283 2.04e-98 290
Msa1190970 AT1G78200.3 54.945 273 119 3 13 282 12 283 2.04e-98 290
Msa1190970 AT1G78200.2 54.945 273 119 3 13 282 12 283 2.04e-98 290
Msa1190970 AT2G34740.1 58.233 249 100 3 35 281 88 334 7.93e-96 286
Msa1190970 AT1G34750.4 59.111 225 91 1 14 238 15 238 1.42e-90 269
Msa1190970 AT1G78200.5 57.563 238 98 2 48 282 1 238 4.39e-90 267
Msa1190970 AT1G78200.4 57.563 238 98 2 48 282 1 238 4.39e-90 267
Msa1190970 AT2G34740.2 57.143 210 86 3 35 242 102 309 1.51e-79 244
Msa1190970 AT2G34740.3 57.143 210 86 3 35 242 84 291 1.55e-79 243
Msa1190970 AT1G22280.2 61.039 154 60 0 33 186 32 185 5.08e-65 202
Msa1190970 AT5G10740.1 43.774 265 141 6 20 281 20 279 3.06e-64 205
Msa1190970 AT5G10740.2 43.774 265 141 6 20 281 20 279 3.06e-64 205
Msa1190970 AT4G31750.2 43.019 265 143 6 20 281 20 279 6.87e-63 200
Msa1190970 AT4G31750.1 43.019 265 143 6 20 281 20 279 1.07e-62 200
Msa1190970 AT4G31750.3 43.019 265 143 6 20 281 20 279 1.07e-62 200
Msa1190970 AT5G24940.1 43.019 265 143 6 20 281 20 279 2.78e-62 203
Msa1190970 AT1G43900.1 40.502 279 151 8 14 282 96 369 1.53e-61 199
Msa1190970 AT5G53140.1 37.945 253 150 5 33 282 100 348 5.19e-51 173
Msa1190970 AT5G53140.2 37.945 253 150 5 33 282 100 348 5.19e-51 173
Msa1190970 AT1G07160.1 37.906 277 155 7 18 281 104 376 5.05e-42 148
Msa1190970 AT2G30020.1 40.650 246 131 6 45 279 149 390 1.35e-40 145
Msa1190970 AT2G40180.1 35.857 251 140 7 48 282 141 386 3.60e-34 128
Msa1190970 AT3G51470.2 31.765 255 145 7 46 281 39 283 5.35e-33 123
Msa1190970 AT3G51470.1 32.157 255 144 8 46 281 83 327 1.63e-32 123
Msa1190970 AT1G67820.2 37.089 213 124 6 59 266 108 315 5.82e-32 122
Msa1190970 AT1G67820.1 37.089 213 124 6 59 266 144 351 1.57e-31 122
Msa1190970 AT2G25620.1 34.615 234 128 7 65 279 127 354 3.12e-31 120
Msa1190970 AT2G25620.2 34.615 234 128 7 65 279 127 354 3.12e-31 120
Msa1190970 AT3G23360.1 31.225 253 140 6 33 281 37 259 6.04e-31 116
Msa1190970 AT3G62260.3 33.054 239 133 8 65 281 26 259 7.29e-31 117
Msa1190970 AT2G33700.1 33.188 229 135 6 65 281 122 344 8.13e-31 119
Msa1190970 AT3G62260.1 33.333 243 127 8 65 281 115 348 4.56e-30 117
Msa1190970 AT3G62260.2 33.333 243 127 8 65 281 116 349 4.78e-30 117
Msa1190970 AT3G11410.1 37.321 209 96 6 66 245 137 339 1.54e-29 115
Msa1190970 AT5G51760.2 37.175 269 111 9 66 279 114 379 2.42e-29 115
Msa1190970 AT5G51760.1 37.175 269 111 9 66 279 144 409 2.90e-29 115
Msa1190970 AT1G07430.1 36.816 201 106 5 67 249 158 355 1.00e-28 114
Msa1190970 AT5G59220.1 38.776 196 102 5 69 249 151 343 1.10e-28 113
Msa1190970 AT2G29380.1 33.103 290 140 12 35 279 78 358 2.19e-28 112
Msa1190970 AT1G72770.4 34.457 267 117 8 66 279 238 499 5.38e-28 112
Msa1190970 AT1G72770.1 34.457 267 117 8 66 279 238 499 5.38e-28 112
Msa1190970 AT1G72770.3 34.457 267 117 8 66 279 238 499 5.38e-28 112
Msa1190970 AT3G16800.4 36.680 259 114 14 69 282 1 254 5.56e-28 108
Msa1190970 AT3G16800.6 36.680 259 114 14 69 282 1 254 5.56e-28 108
Msa1190970 AT1G48040.1 31.535 241 135 6 65 281 115 349 6.28e-28 111
Msa1190970 AT4G26080.1 36.078 255 116 11 66 279 172 420 1.85e-27 110
Msa1190970 AT3G16800.2 35.849 265 120 14 63 282 90 349 2.07e-27 109
Msa1190970 AT3G16800.1 35.849 265 120 14 63 282 90 349 2.07e-27 109
Msa1190970 AT3G16800.3 35.849 265 120 14 63 282 90 349 2.07e-27 109
Msa1190970 AT5G57050.2 36.364 253 119 10 66 279 120 369 2.21e-27 109
Msa1190970 AT3G17250.1 31.148 244 136 8 64 281 156 393 2.39e-27 110
Msa1190970 AT5G57050.1 36.614 254 117 12 66 279 160 409 3.69e-27 109
Msa1190970 AT1G17550.1 32.959 267 122 9 66 279 237 499 1.76e-24 102
Msa1190970 AT1G17550.2 32.959 267 122 9 66 279 237 499 1.76e-24 102
Msa1190970 AT2G40860.4 30.342 234 147 6 59 279 318 548 1.77e-24 103
Msa1190970 AT2G40860.1 30.081 246 156 6 47 279 404 646 2.12e-24 103
Msa1190970 AT1G09160.2 32.189 233 134 8 66 279 68 295 1.26e-23 99.8
Msa1190970 AT1G09160.1 32.189 233 134 8 66 279 68 295 1.26e-23 99.8
Msa1190970 AT1G18030.1 29.151 271 154 10 44 281 83 348 3.97e-23 97.4
Msa1190970 AT4G08260.1 31.092 238 126 7 48 279 1 206 1.18e-21 90.9
Msa1190970 AT5G27930.1 34.749 259 120 15 69 279 95 352 1.49e-21 93.6
Msa1190970 AT5G27930.2 34.749 259 120 15 69 279 95 352 1.49e-21 93.6
Msa1190970 AT2G40860.2 29.362 235 150 6 47 268 404 635 1.53e-21 94.7
Msa1190970 AT3G05640.2 33.852 257 125 13 69 282 96 350 1.93e-21 92.8
Msa1190970 AT3G05640.1 33.852 257 125 13 69 282 96 350 1.93e-21 92.8
Msa1190970 AT3G05640.3 33.852 257 125 13 69 282 96 350 1.93e-21 92.8
Msa1190970 AT4G27800.1 29.900 301 143 12 33 278 58 345 1.96e-21 93.2
Msa1190970 AT3G51370.1 29.010 293 146 11 31 269 40 324 7.77e-21 91.7
Msa1190970 AT3G51370.3 29.010 293 146 11 31 269 40 324 7.77e-21 91.7
Msa1190970 AT4G38520.2 26.814 317 163 10 31 281 42 355 3.12e-20 90.1
Msa1190970 AT4G38520.1 26.814 317 163 10 31 281 42 355 3.12e-20 90.1
Msa1190970 AT1G47380.1 28.947 266 148 12 37 279 44 291 4.52e-20 89.7
Msa1190970 AT5G02760.1 29.167 288 151 11 10 250 12 293 4.98e-20 89.0
Msa1190970 AT4G31860.1 32.955 176 92 5 126 281 160 329 2.24e-19 87.0
Msa1190970 AT1G18030.2 30.942 223 121 8 44 238 83 300 3.23e-19 85.9
Msa1190970 AT2G25070.1 24.913 289 143 8 61 281 47 329 9.59e-19 85.5
Msa1190970 AT2G25070.2 24.913 289 143 8 61 281 47 329 9.59e-19 85.5
Msa1190970 AT1G68410.4 27.059 255 157 9 49 279 51 300 9.82e-19 85.9
Msa1190970 AT1G68410.3 27.059 255 157 9 49 279 51 300 9.82e-19 85.9
Msa1190970 AT1G68410.1 27.059 255 157 9 49 279 51 300 9.82e-19 85.9
Msa1190970 AT1G68410.2 27.059 255 157 9 49 279 51 300 9.82e-19 85.9
Msa1190970 AT3G12620.2 30.000 320 143 15 32 279 45 355 1.97e-18 84.7
Msa1190970 AT3G12620.1 30.000 320 143 15 32 279 45 355 1.97e-18 84.7
Msa1190970 AT3G55050.1 27.358 318 160 10 32 282 46 359 2.91e-18 84.3
Msa1190970 AT3G55050.2 27.358 318 160 10 32 282 46 359 2.91e-18 84.3
Msa1190970 AT2G20050.1 27.559 254 143 9 66 279 143 395 6.04e-18 84.3
Msa1190970 AT2G20050.2 27.559 254 143 9 66 279 143 395 6.44e-18 84.3
Msa1190970 AT4G31860.3 38.060 134 66 4 126 248 160 287 2.75e-17 80.5
Msa1190970 AT1G79630.6 36.709 158 83 6 125 266 111 267 4.52e-17 80.9
Msa1190970 AT1G79630.3 36.709 158 83 6 125 266 111 267 4.52e-17 80.9
Msa1190970 AT1G79630.4 36.709 158 83 6 125 266 111 267 4.52e-17 80.9
Msa1190970 AT1G79630.5 36.709 158 83 6 125 266 111 267 4.52e-17 80.9
Msa1190970 AT1G79630.2 36.709 158 83 6 125 266 151 307 4.80e-17 80.9
Msa1190970 AT1G79630.7 36.709 158 83 6 125 266 151 307 4.80e-17 80.9
Msa1190970 AT1G79630.1 36.943 157 82 6 126 266 222 377 6.94e-17 80.9
Msa1190970 AT1G79630.8 36.943 157 82 6 126 266 218 373 7.57e-17 80.5
Msa1190970 AT5G66080.1 28.082 292 149 11 32 269 43 327 1.00e-16 79.7
Msa1190970 AT5G01700.1 35.450 189 105 8 93 265 78 265 1.03e-16 79.3
Msa1190970 AT5G06750.3 27.037 270 137 11 28 248 48 306 1.26e-16 79.7
Msa1190970 AT5G06750.1 27.037 270 137 11 28 248 48 306 1.26e-16 79.7
Msa1190970 AT3G02750.2 34.184 196 111 8 88 266 177 371 1.55e-16 79.7
Msa1190970 AT3G02750.1 34.184 196 111 8 88 266 177 371 1.55e-16 79.7
Msa1190970 AT5G01700.2 35.450 189 105 8 93 265 127 314 3.13e-16 78.2
Msa1190970 AT4G33920.1 27.097 310 164 12 7 266 5 302 7.19e-16 77.4
Msa1190970 AT4G03415.1 41.007 139 65 6 126 248 195 332 8.98e-16 77.4
Msa1190970 AT4G03415.3 41.007 139 65 6 126 248 195 332 8.98e-16 77.4
Msa1190970 AT4G03415.2 41.007 139 65 6 126 248 195 332 8.98e-16 77.4
Msa1190970 AT4G32950.1 31.765 255 133 12 63 282 69 317 1.19e-15 76.3
Msa1190970 AT3G27140.1 29.778 225 100 6 61 279 14 186 1.71e-15 74.7
Msa1190970 AT1G16220.1 34.857 175 92 7 126 279 199 372 1.83e-15 76.6
Msa1190970 AT5G26010.1 31.818 220 104 10 66 248 73 283 1.29e-14 73.2
Msa1190970 AT5G36250.1 33.516 182 101 8 103 266 183 362 2.96e-14 72.8
Msa1190970 AT3G51370.2 29.907 214 99 7 102 269 31 239 4.94e-14 71.2
Msa1190970 AT4G31860.2 37.705 122 59 4 126 236 160 275 8.38e-14 70.5
Msa1190970 AT3G06270.1 23.828 256 154 8 66 281 88 342 1.87e-13 70.1
Msa1190970 AT5G59220.2 36.242 149 77 5 69 202 151 296 2.02e-13 69.7
Msa1190970 AT1G03590.1 37.410 139 70 6 126 248 185 322 2.33e-13 70.1
Msa1190970 AT5G19280.1 27.881 269 159 12 41 281 316 577 4.19e-13 69.7
Msa1190970 AT5G66080.2 29.907 214 99 7 102 269 15 223 6.91e-13 67.8
Msa1190970 AT4G33920.2 29.327 208 101 7 102 266 15 219 9.91e-12 64.7
Msa1190970 AT2G05050.1 37.500 96 54 1 190 279 92 187 1.21e-11 62.8
Msa1190970 AT5G27930.3 33.493 209 97 13 68 235 94 301 2.76e-11 63.5
Msa1190970 AT5G19280.2 26.882 279 159 13 41 281 316 587 3.53e-11 63.9

Find 86 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTAATGTAGCCTGATTTC+TGG 0.158630 8_1:+34403924 Msa1190970:intron
TGCTTTCTGTTGTTGGTTCA+TGG 0.226794 8_1:-34404147 None:intergenic
TATTAGCCAGTGACGGATTA+TGG 0.240034 8_1:+34404741 Msa1190970:CDS
ATATCACTGCTTTCTGTTGT+TGG 0.245782 8_1:-34404154 None:intergenic
TTTAGAGAAATCAGGTGAAT+TGG 0.295823 8_1:+34404000 Msa1190970:CDS
GTTGGTGCAGGAGAAAGTTT+TGG 0.308161 8_1:+34403191 Msa1190970:intron
AAGCTAGTGGTGGCCAATAT+CGG 0.310892 8_1:+34404070 Msa1190970:CDS
CTTGTGGAGGATTTCTTTGC+CGG 0.314422 8_1:-34402254 None:intergenic
TGCCGGTCATTGTTGAGTTC+TGG 0.327172 8_1:-34402237 None:intergenic
CTCTTTCCTTTCCCAGAGTC+CGG 0.338408 8_1:-34403225 None:intergenic
GGTTTATTTGCAATATTTGA+TGG 0.353198 8_1:+34403360 Msa1190970:CDS
TGGCCAATATCGGGGATTCT+CGG 0.361781 8_1:+34404080 Msa1190970:CDS
CTGAAGTCATGTGTACCTTT+AGG 0.369744 8_1:-34404670 None:intergenic
TTACTGAAGAAGCGCTTAAC+AGG 0.372627 8_1:+34405003 Msa1190970:CDS
AGCCCGAGAATCCCCGATAT+TGG 0.376877 8_1:-34404083 None:intergenic
AGCTAGTGGTGGCCAATATC+GGG 0.378723 8_1:+34404071 Msa1190970:CDS
TTAGAGAAATCAGGTGAATT+GGG 0.378847 8_1:+34404001 Msa1190970:CDS
GGGGATGTTCCACGGGTTGA+TGG 0.383140 8_1:+34404611 Msa1190970:intron
CATGGCTTTCACTTGGTAAA+GGG 0.396679 8_1:+34403270 Msa1190970:CDS
GGACCATCTGATCCGGACTC+TGG 0.401326 8_1:+34403213 Msa1190970:CDS
TTAGCAGTGTCAAGGGCATT+TGG 0.410576 8_1:+34404638 Msa1190970:CDS
CATGTTGATGACAACGAGTT+GGG 0.413559 8_1:+34403339 Msa1190970:CDS
TGCATTCATACAAATTACTT+TGG 0.422352 8_1:-34405269 None:intergenic
ATGCAATAAATATTTAGTAT+TGG 0.430780 8_1:+34405236 Msa1190970:three_prime_UTR
GGCCAATATCGGGGATTCTC+GGG 0.445298 8_1:+34404081 Msa1190970:CDS
TCATGGCTTTCACTTGGTAA+AGG 0.452390 8_1:+34403269 Msa1190970:CDS
GCAGGTTCAGTCCAGAAATC+AGG 0.467118 8_1:-34403935 None:intergenic
AATAAATATTTAGTATTGGA+TGG 0.467470 8_1:+34405240 Msa1190970:three_prime_UTR
TGCTTTCATTCAAACCAACT+TGG 0.468409 8_1:+34405190 Msa1190970:three_prime_UTR
GTTTGATAATATCTTAAAAG+AGG 0.468636 8_1:+34403425 Msa1190970:CDS
CGGGCTGTCTTATCTGAGAA+TGG 0.477872 8_1:+34404100 Msa1190970:CDS
TACCTTCCATAATCCGTCAC+TGG 0.483949 8_1:-34404747 None:intergenic
CCCTTCTCTCTCATACAGCT+TGG 0.493319 8_1:+34402164 Msa1190970:five_prime_UTR
TCTGGAAGGGTGTATGTAAG+AGG 0.495329 8_1:-34402219 None:intergenic
CGATTCAGGGGATGTTCCAC+GGG 0.498943 8_1:+34404604 Msa1190970:intron
TCGATTCAGGGGATGTTCCA+CGG 0.499734 8_1:+34404603 Msa1190970:intron
AGATGAGAACGCAAGTAATC+CGG 0.512819 8_1:-34403402 None:intergenic
AAATCAGGTGAATTGGGTAA+AGG 0.521064 8_1:+34404007 Msa1190970:CDS
GGATGCTATCAAAGATATCA+AGG 0.533539 8_1:+34404956 Msa1190970:CDS
AGAAATCCTCCACAAGATGA+AGG 0.537571 8_1:+34402261 Msa1190970:CDS
GATGATATACCTTCATCTTG+TGG 0.538998 8_1:-34402270 None:intergenic
TTCCAGAACTCAACAATGAC+CGG 0.539258 8_1:+34402235 Msa1190970:exon
GCATGTTGATGACAACGAGT+TGG 0.541511 8_1:+34403338 Msa1190970:CDS
TTCGTTATATTAGCCAGTGA+CGG 0.544773 8_1:+34404734 Msa1190970:CDS
TGAGCAGAATAACACCTCAA+TGG 0.546519 8_1:-34405138 None:intergenic
TTCCCAGAGTCCGGATCAGA+TGG 0.546662 8_1:-34403216 None:intergenic
AAGTTGGTTTGAATGAAAGC+AGG 0.549427 8_1:-34405188 None:intergenic
TCTGATCCGGACTCTGGGAA+AGG 0.550040 8_1:+34403219 Msa1190970:CDS
GGTGTATGTAAGAGGTGAAG+AGG 0.559492 8_1:-34402211 None:intergenic
GTCATTGTTGAGTTCTGGAA+GGG 0.560441 8_1:-34402232 None:intergenic
ATGTCAAAGCATGTAACTCA+TGG 0.561385 8_1:+34403252 Msa1190970:CDS
TGTAACTCATGGCTTTCACT+TGG 0.561706 8_1:+34403263 Msa1190970:CDS
CCAAGCTGTATGAGAGAGAA+GGG 0.562536 8_1:-34402164 None:intergenic
ATGGACAGTTAGCAGTGTCA+AGG 0.584292 8_1:+34404630 Msa1190970:CDS
GCTCTCTTCACACTATCCGC+AGG 0.588529 8_1:-34403953 None:intergenic
GCCAAGCTGTATGAGAGAGA+AGG 0.589196 8_1:-34402165 None:intergenic
GGTCATTGTTGAGTTCTGGA+AGG 0.592802 8_1:-34402233 None:intergenic
AGCAACCACGTAGTCTTCCA+TGG 0.592925 8_1:-34403307 None:intergenic
ACATCTCTTGCGTTGTTGTG+AGG 0.595080 8_1:+34405039 Msa1190970:CDS
GGGTCAATCAAATCATGCCA+TGG 0.600430 8_1:+34403290 Msa1190970:CDS
ATTTGGCGACAAAAGCCTAA+AGG 0.604211 8_1:+34404655 Msa1190970:CDS
TGGACAGTTAGCAGTGTCAA+GGG 0.607927 8_1:+34404631 Msa1190970:CDS
CATGTCAAATCAAGAAGCAG+TGG 0.611552 8_1:+34404935 Msa1190970:CDS
AGCCAGTGACGGATTATGGA+AGG 0.612138 8_1:+34404745 Msa1190970:CDS
TCAGGTGAATTGGGTAAAGG+AGG 0.612943 8_1:+34404010 Msa1190970:CDS
AAACAACACAGTATCCAAGT+TGG 0.613452 8_1:-34405204 None:intergenic
TCACGCAGGTCATACTGTAC+CGG 0.619609 8_1:+34403383 Msa1190970:CDS
ATCGTCTTCACTGTCACATG+CGG 0.620460 8_1:-34404695 None:intergenic
TCAAAGATATCAAGGATGCT+CGG 0.621211 8_1:+34404964 Msa1190970:CDS
TTCAGTAAGATGCTTTGCTG+CGG 0.623020 8_1:-34404988 None:intergenic
GCAATATTTGATGGTCACGC+AGG 0.624491 8_1:+34403369 Msa1190970:CDS
GATATACCTTCATCTTGTGG+AGG 0.629255 8_1:-34402267 None:intergenic
CTGAAGAAGCGCTTAACAGG+AGG 0.643281 8_1:+34405006 Msa1190970:CDS
GCTAGTGGTGGCCAATATCG+GGG 0.654265 8_1:+34404072 Msa1190970:CDS
AATTAATTGTCAGAAGCTAG+TGG 0.661230 8_1:+34404057 Msa1190970:CDS
ATAAGTGTTGATATCCATTG+AGG 0.661954 8_1:+34405124 Msa1190970:three_prime_UTR
TTGTCTTAGAATAGATGATG+AGG 0.666127 8_1:-34402121 None:intergenic
GCTAACTGTCCATCAACCCG+TGG 0.668653 8_1:-34404620 None:intergenic
GGTTCATGGTCAACCGACAG+TGG 0.669690 8_1:-34404133 None:intergenic
TGATTTCTGGACTGAACCTG+CGG 0.674056 8_1:+34403937 Msa1190970:CDS
TGGTGTTGCTATACCACTGT+CGG 0.682597 8_1:+34404120 Msa1190970:CDS
TATGAGAGAGAAGGGATACG+AGG 0.683642 8_1:-34402156 None:intergenic
TAATTGTCAGAAGCTAGTGG+TGG 0.692489 8_1:+34404060 Msa1190970:CDS
TCATGCCATGGAAGACTACG+TGG 0.697697 8_1:+34403302 Msa1190970:CDS
GTGAAGACGATAGATGACGG+TGG 0.737990 8_1:+34404707 Msa1190970:CDS
ACAGTGAAGACGATAGATGA+CGG 0.781656 8_1:+34404704 Msa1190970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATCAAATCAAATATA+AGG - chr8_1:34402355-34402374 None:intergenic 15.0%
!! TATAATATTTGAGAATATTG+TGG - chr8_1:34402427-34402446 None:intergenic 15.0%
!! TCTCAAATATTATAGTTAAT+TGG + chr8_1:34402433-34402452 Msa1190970:intron 15.0%
!!! CTATTGAATTATTTTTCTTT+CGG - chr8_1:34402835-34402854 None:intergenic 15.0%
!! AAAGAAAAATAATTCAATAG+AGG + chr8_1:34402835-34402854 Msa1190970:intron 15.0%
!!! ATAATTTTTCAGTTTTTGTT+TGG - chr8_1:34403709-34403728 None:intergenic 15.0%
!! AGGTAAAATATTTGATTAAA+TGG + chr8_1:34404765-34404784 Msa1190970:intron 15.0%
!! GGTAAAATATTTGATTAAAT+GGG + chr8_1:34404766-34404785 Msa1190970:intron 15.0%
!!! ATATTCTCATTTGTTATTAT+AGG + chr8_1:34404911-34404930 Msa1190970:intron 15.0%
!! ATGCAATAAATATTTAGTAT+TGG + chr8_1:34405236-34405255 Msa1190970:three_prime_UTR 15.0%
!!! AATAAATATTTAGTATTGGA+TGG + chr8_1:34405240-34405259 Msa1190970:three_prime_UTR 15.0%
!! AGCTAATTGAAAATTAAAGA+TGG - chr8_1:34402378-34402397 None:intergenic 20.0%
!! ATAGTTAATTGGTTAATTAG+CGG + chr8_1:34402444-34402463 Msa1190970:intron 20.0%
!!! ATTTTTTCTTATGTTTCAAC+TGG + chr8_1:34403163-34403182 Msa1190970:intron 20.0%
!!! GTTTGATAATATCTTAAAAG+AGG + chr8_1:34403425-34403444 Msa1190970:CDS 20.0%
!! ATTATCAATTTCAATTCAAG+TGG + chr8_1:34403724-34403743 Msa1190970:intron 20.0%
!!! ATTTATCTTTTTTCTACACT+TGG + chr8_1:34403813-34403832 Msa1190970:intron 20.0%
! TATGAAGAGAAAAAAGCAAA+GGG - chr8_1:34402303-34402322 None:intergenic 25.0%
! ATATGAAGAGAAAAAAGCAA+AGG - chr8_1:34402304-34402323 None:intergenic 25.0%
! TAGTTAATTGGTTAATTAGC+GGG + chr8_1:34402445-34402464 Msa1190970:intron 25.0%
! TTTACCAGTTAATTGTTATG+TGG + chr8_1:34402479-34402498 Msa1190970:intron 25.0%
! CATTTAATTATGAAGTTTGC+TGG - chr8_1:34402505-34402524 None:intergenic 25.0%
! ATAATATAGATCAGATACAC+CGG - chr8_1:34402699-34402718 None:intergenic 25.0%
! TATAATCTAACAGTTGTAAC+AGG + chr8_1:34402948-34402967 Msa1190970:intron 25.0%
! AATATCTTACTAGTTACCAT+TGG + chr8_1:34403064-34403083 Msa1190970:intron 25.0%
! GGTTTATTTGCAATATTTGA+TGG + chr8_1:34403360-34403379 Msa1190970:CDS 25.0%
! ATATCTTAAAAGAGGTAATG+AGG + chr8_1:34403433-34403452 Msa1190970:intron 25.0%
! ACTCTAAGTAATCACAAAAA+CGG - chr8_1:34403463-34403482 None:intergenic 25.0%
!!! TCTACTATTTTAGAGAAATC+AGG + chr8_1:34403992-34404011 Msa1190970:CDS 25.0%
! AAAACATCATATACTATACC+TGG - chr8_1:34404211-34404230 None:intergenic 25.0%
! TCTATATGTTATTCAGTATC+TGG + chr8_1:34404365-34404384 Msa1190970:intron 25.0%
! AAGGATACAGTTTATATCTA+AGG + chr8_1:34404565-34404584 Msa1190970:intron 25.0%
!!! ACATATTTTGTTATCGATTC+AGG + chr8_1:34404590-34404609 Msa1190970:intron 25.0%
!!! CATATTTTGTTATCGATTCA+GGG + chr8_1:34404591-34404610 Msa1190970:intron 25.0%
!!! ATATTTTGTTATCGATTCAG+GGG + chr8_1:34404592-34404611 Msa1190970:intron 25.0%
! TGCATTCATACAAATTACTT+TGG - chr8_1:34405272-34405291 None:intergenic 25.0%
TTGTCTTAGAATAGATGATG+AGG - chr8_1:34402124-34402143 None:intergenic 30.0%
TAAATGTTAGCCCAATATCA+CGG + chr8_1:34402519-34402538 Msa1190970:intron 30.0%
! TTGGTTAGTTCATTAATGAC+CGG + chr8_1:34402677-34402696 Msa1190970:intron 30.0%
! ATTTTCTCAAGATTTGCCAA+TGG - chr8_1:34403083-34403102 None:intergenic 30.0%
GTGCAATTTATCTATTCATG+TGG - chr8_1:34403107-34403126 None:intergenic 30.0%
CTCTAAGTAATCACAAAAAC+GGG - chr8_1:34403462-34403481 None:intergenic 30.0%
GTGATTTCTCATAATGCATA+GGG - chr8_1:34403579-34403598 None:intergenic 30.0%
! CATAGATTAAGCCTATGTTT+TGG - chr8_1:34403637-34403656 None:intergenic 30.0%
!! TTTCAGTTTTTGTTTGGAAC+CGG - chr8_1:34403703-34403722 None:intergenic 30.0%
AAACTCTTGAAACATGCAAA+AGG - chr8_1:34403785-34403804 None:intergenic 30.0%
!!! TTTTTTCTACACTTGGTGAA+TGG + chr8_1:34403820-34403839 Msa1190970:intron 30.0%
!! GTATTTTTACCGTATTCATC+TGG + chr8_1:34403858-34403877 Msa1190970:intron 30.0%
TTTAGAGAAATCAGGTGAAT+TGG + chr8_1:34404000-34404019 Msa1190970:CDS 30.0%
TTAGAGAAATCAGGTGAATT+GGG + chr8_1:34404001-34404020 Msa1190970:CDS 30.0%
AATTAATTGTCAGAAGCTAG+TGG + chr8_1:34404057-34404076 Msa1190970:CDS 30.0%
AGCAGTGATATAAAAAACAG+AGG + chr8_1:34404166-34404185 Msa1190970:CDS 30.0%
AGTGATATAAAAAACAGAGG+TGG + chr8_1:34404169-34404188 Msa1190970:CDS 30.0%
CAATGATGCATAGATATGAA+AGG - chr8_1:34404317-34404336 None:intergenic 30.0%
GCATCAATACGTGATATTTA+AGG + chr8_1:34404398-34404417 Msa1190970:intron 30.0%
CACTGAATAATTTGAGAAGA+TGG - chr8_1:34404470-34404489 None:intergenic 30.0%
ACCAAACATACATGTTTGAT+TGG + chr8_1:34404848-34404867 Msa1190970:intron 30.0%
TCCAATCAAACATGTATGTT+TGG - chr8_1:34404852-34404871 None:intergenic 30.0%
!! ATAAGTGTTGATATCCATTG+AGG + chr8_1:34405124-34405143 Msa1190970:three_prime_UTR 30.0%
GAAGAGGCGAAAAAATAATG+AGG - chr8_1:34402198-34402217 None:intergenic 35.0%
GATGATATACCTTCATCTTG+TGG - chr8_1:34402273-34402292 None:intergenic 35.0%
TAATTGGTTAATTAGCGGGA+TGG + chr8_1:34402449-34402468 Msa1190970:intron 35.0%
AAATGTTAGCCCAATATCAC+GGG + chr8_1:34402520-34402539 Msa1190970:intron 35.0%
AATCACTTTCCCGTGATATT+GGG - chr8_1:34402532-34402551 None:intergenic 35.0%
TTGAAAAAAGTTACTCGCTC+AGG - chr8_1:34402779-34402798 None:intergenic 35.0%
TGACATATGTATGTGAGCTA+TGG + chr8_1:34402861-34402880 Msa1190970:intron 35.0%
CTAAATGCATCAGATACTTG+AGG - chr8_1:34403016-34403035 None:intergenic 35.0%
TGATGCATTTAGCCACTTAT+TGG + chr8_1:34403024-34403043 Msa1190970:intron 35.0%
GATGCATTTAGCCACTTATT+GGG + chr8_1:34403025-34403044 Msa1190970:intron 35.0%
ATGTGTATCTTCCCAATAAG+TGG - chr8_1:34403039-34403058 None:intergenic 35.0%
ATGTTTCAACTGGAGAATGT+TGG + chr8_1:34403173-34403192 Msa1190970:intron 35.0%
ATGTCAAAGCATGTAACTCA+TGG + chr8_1:34403252-34403271 Msa1190970:CDS 35.0%
GGTGATTTCTCATAATGCAT+AGG - chr8_1:34403580-34403599 None:intergenic 35.0%
AAATCACCACCAATTTGCAT+TGG + chr8_1:34403551-34403570 Msa1190970:intron 35.0%
AATCACCACCAATTTGCATT+GGG + chr8_1:34403552-34403571 Msa1190970:intron 35.0%
! TTTTGGCACACTTATGCATA+GGG - chr8_1:34403620-34403639 None:intergenic 35.0%
!!! CTTGGTGAATGGTTTTGATT+TGG + chr8_1:34403831-34403850 Msa1190970:intron 35.0%
AAATCAGGTGAATTGGGTAA+AGG + chr8_1:34404007-34404026 Msa1190970:CDS 35.0%
ATATCACTGCTTTCTGTTGT+TGG - chr8_1:34404157-34404176 None:intergenic 35.0%
!! GGTTTTGTATCTAACTTTCC+AGG + chr8_1:34404190-34404209 Msa1190970:CDS 35.0%
! GAATAGCTGTATTGATGTAC+TGG + chr8_1:34404288-34404307 Msa1190970:intron 35.0%
ATTAAATGTCTCTACACCGA+AGG - chr8_1:34404442-34404461 None:intergenic 35.0%
GTGTCTATTTGTCACTATCA+TGG + chr8_1:34404487-34404506 Msa1190970:intron 35.0%
GTTCCTAAAATATTTGCTCG+TGG + chr8_1:34404540-34404559 Msa1190970:intron 35.0%
! TAGCCACGAGCAAATATTTT+AGG - chr8_1:34404546-34404565 None:intergenic 35.0%
AAAATATTTGCTCGTGGCTA+AGG + chr8_1:34404546-34404565 Msa1190970:intron 35.0%
TTCGTTATATTAGCCAGTGA+CGG + chr8_1:34404734-34404753 Msa1190970:CDS 35.0%
GGATGCTATCAAAGATATCA+AGG + chr8_1:34404956-34404975 Msa1190970:CDS 35.0%
TCAAAGATATCAAGGATGCT+CGG + chr8_1:34404964-34404983 Msa1190970:CDS 35.0%
!! AAGTTGGTTTGAATGAAAGC+AGG - chr8_1:34405191-34405210 None:intergenic 35.0%
TGCTTTCATTCAAACCAACT+TGG + chr8_1:34405190-34405209 Msa1190970:three_prime_UTR 35.0%
AAACAACACAGTATCCAAGT+TGG - chr8_1:34405207-34405226 None:intergenic 35.0%
!! GTCATTGTTGAGTTCTGGAA+GGG - chr8_1:34402235-34402254 None:intergenic 40.0%
TTCCAGAACTCAACAATGAC+CGG + chr8_1:34402235-34402254 Msa1190970:exon 40.0%
AGAAATCCTCCACAAGATGA+AGG + chr8_1:34402261-34402280 Msa1190970:CDS 40.0%
GATATACCTTCATCTTGTGG+AGG - chr8_1:34402270-34402289 None:intergenic 40.0%
CTGGCCACATAACAATTAAC+TGG - chr8_1:34402486-34402505 None:intergenic 40.0%
GAATCACTTTCCCGTGATAT+TGG - chr8_1:34402533-34402552 None:intergenic 40.0%
TATCACGGGAAAGTGATTCA+TGG + chr8_1:34402534-34402553 Msa1190970:intron 40.0%
ATCACGGGAAAGTGATTCAT+GGG + chr8_1:34402535-34402554 Msa1190970:intron 40.0%
CAATGATAGCAGTATTGCAC+TGG + chr8_1:34402560-34402579 Msa1190970:intron 40.0%
AATGAACTAACCAATGCACC+CGG - chr8_1:34402671-34402690 None:intergenic 40.0%
GAAAATCTGACGAGTGTGAA+AGG + chr8_1:34402801-34402820 Msa1190970:intron 40.0%
! TTGGTGCAGGAGAAAGTTTT+GGG + chr8_1:34403192-34403211 Msa1190970:intron 40.0%
TGTAACTCATGGCTTTCACT+TGG + chr8_1:34403263-34403282 Msa1190970:CDS 40.0%
TCATGGCTTTCACTTGGTAA+AGG + chr8_1:34403269-34403288 Msa1190970:CDS 40.0%
CATGGCTTTCACTTGGTAAA+GGG + chr8_1:34403270-34403289 Msa1190970:CDS 40.0%
!! CATGTTGATGACAACGAGTT+GGG + chr8_1:34403339-34403358 Msa1190970:CDS 40.0%
AGATGAGAACGCAAGTAATC+CGG - chr8_1:34403405-34403424 None:intergenic 40.0%
TGACGTCTGTTTGATGTGAA+TGG - chr8_1:34403503-34403522 None:intergenic 40.0%
CATAGGGACACAATGCAAAT+TGG - chr8_1:34403563-34403582 None:intergenic 40.0%
!! GTTTTGGCACACTTATGCAT+AGG - chr8_1:34403621-34403640 None:intergenic 40.0%
GCATAAGTGTGCCAAAACAT+AGG + chr8_1:34403623-34403642 Msa1190970:intron 40.0%
CCAACATCTCCAGATGAATA+CGG - chr8_1:34403870-34403889 None:intergenic 40.0%
GTCTAATGTAGCCTGATTTC+TGG + chr8_1:34403924-34403943 Msa1190970:intron 40.0%
TAATTGTCAGAAGCTAGTGG+TGG + chr8_1:34404060-34404079 Msa1190970:CDS 40.0%
!! TGCTTTCTGTTGTTGGTTCA+TGG - chr8_1:34404150-34404169 None:intergenic 40.0%
ATTTGGCGACAAAAGCCTAA+AGG + chr8_1:34404655-34404674 Msa1190970:CDS 40.0%
CTGAAGTCATGTGTACCTTT+AGG - chr8_1:34404673-34404692 None:intergenic 40.0%
ACAGTGAAGACGATAGATGA+CGG + chr8_1:34404704-34404723 Msa1190970:CDS 40.0%
!! TATTAGCCAGTGACGGATTA+TGG + chr8_1:34404741-34404760 Msa1190970:CDS 40.0%
ATTCCTTTGCACTCACCTTA+TGG + chr8_1:34404810-34404829 Msa1190970:intron 40.0%
TTCCTTTGCACTCACCTTAT+GGG + chr8_1:34404811-34404830 Msa1190970:intron 40.0%
TAGAAGCAAAACTGCCCATA+AGG - chr8_1:34404828-34404847 None:intergenic 40.0%
CATGTCAAATCAAGAAGCAG+TGG + chr8_1:34404935-34404954 Msa1190970:CDS 40.0%
TTCAGTAAGATGCTTTGCTG+CGG - chr8_1:34404991-34405010 None:intergenic 40.0%
!! TTACTGAAGAAGCGCTTAAC+AGG + chr8_1:34405003-34405022 Msa1190970:CDS 40.0%
TGAGCAGAATAACACCTCAA+TGG - chr8_1:34405141-34405160 None:intergenic 40.0%
TATGAGAGAGAAGGGATACG+AGG - chr8_1:34402159-34402178 None:intergenic 45.0%
CCAAGCTGTATGAGAGAGAA+GGG - chr8_1:34402167-34402186 None:intergenic 45.0%
GGTGTATGTAAGAGGTGAAG+AGG - chr8_1:34402214-34402233 None:intergenic 45.0%
! TCTGGAAGGGTGTATGTAAG+AGG - chr8_1:34402222-34402241 None:intergenic 45.0%
!! GGTCATTGTTGAGTTCTGGA+AGG - chr8_1:34402236-34402255 None:intergenic 45.0%
CTTGTGGAGGATTTCTTTGC+CGG - chr8_1:34402257-34402276 None:intergenic 45.0%
ATGAACTAACCAATGCACCC+GGG - chr8_1:34402670-34402689 None:intergenic 45.0%
! GTTGGTGCAGGAGAAAGTTT+TGG + chr8_1:34403191-34403210 Msa1190970:intron 45.0%
!!! AGTTTTGGGACCATCTGATC+CGG + chr8_1:34403206-34403225 Msa1190970:CDS 45.0%
GGGTCAATCAAATCATGCCA+TGG + chr8_1:34403290-34403309 Msa1190970:CDS 45.0%
!! GCATGTTGATGACAACGAGT+TGG + chr8_1:34403338-34403357 Msa1190970:CDS 45.0%
! GCAATATTTGATGGTCACGC+AGG + chr8_1:34403369-34403388 Msa1190970:CDS 45.0%
AGGGACACAATGCAAATTGG+TGG - chr8_1:34403560-34403579 None:intergenic 45.0%
CATAGGGACCCAATGCAAAT+TGG - chr8_1:34403604-34403623 None:intergenic 45.0%
!! GTTTTTGTTTGGAACCGGCA+TGG - chr8_1:34403698-34403717 None:intergenic 45.0%
CCGTATTCATCTGGAGATGT+TGG + chr8_1:34403867-34403886 Msa1190970:intron 45.0%
!!! CATCTGGAGATGTTGGCTTT+TGG + chr8_1:34403874-34403893 Msa1190970:intron 45.0%
! TGATTTCTGGACTGAACCTG+CGG + chr8_1:34403937-34403956 Msa1190970:CDS 45.0%
TCAGGTGAATTGGGTAAAGG+AGG + chr8_1:34404010-34404029 Msa1190970:CDS 45.0%
AAGCTAGTGGTGGCCAATAT+CGG + chr8_1:34404070-34404089 Msa1190970:CDS 45.0%
!! TGGTGTTGCTATACCACTGT+CGG + chr8_1:34404120-34404139 Msa1190970:CDS 45.0%
TTGTCACTATCATGGTTGCG+TGG + chr8_1:34404495-34404514 Msa1190970:intron 45.0%
ATGGACAGTTAGCAGTGTCA+AGG + chr8_1:34404630-34404649 Msa1190970:CDS 45.0%
TGGACAGTTAGCAGTGTCAA+GGG + chr8_1:34404631-34404650 Msa1190970:CDS 45.0%
!! TTAGCAGTGTCAAGGGCATT+TGG + chr8_1:34404638-34404657 Msa1190970:CDS 45.0%
ATCGTCTTCACTGTCACATG+CGG - chr8_1:34404698-34404717 None:intergenic 45.0%
TACCTTCCATAATCCGTCAC+TGG - chr8_1:34404750-34404769 None:intergenic 45.0%
ACATCTCTTGCGTTGTTGTG+AGG + chr8_1:34405039-34405058 Msa1190970:CDS 45.0%
!! AACAAAAAATAAAATTAAAA+CGG + chr8_1:34402080-34402099 Msa1190970:five_prime_UTR 5.0%
CCCTTCTCTCTCATACAGCT+TGG + chr8_1:34402164-34402183 Msa1190970:five_prime_UTR 50.0%
GCCAAGCTGTATGAGAGAGA+AGG - chr8_1:34402168-34402187 None:intergenic 50.0%
TGCCGGTCATTGTTGAGTTC+TGG - chr8_1:34402240-34402259 None:intergenic 50.0%
TACTTTCGTAACCTGTGCCC+CGG + chr8_1:34402649-34402668 Msa1190970:intron 50.0%
TGAACTAACCAATGCACCCG+GGG - chr8_1:34402669-34402688 None:intergenic 50.0%
CAACTGGAGAATGTTGGTGC+AGG + chr8_1:34403179-34403198 Msa1190970:intron 50.0%
CTCTTTCCTTTCCCAGAGTC+CGG - chr8_1:34403228-34403247 None:intergenic 50.0%
TCATGCCATGGAAGACTACG+TGG + chr8_1:34403302-34403321 Msa1190970:CDS 50.0%
AGCAACCACGTAGTCTTCCA+TGG - chr8_1:34403310-34403329 None:intergenic 50.0%
TCACGCAGGTCATACTGTAC+CGG + chr8_1:34403383-34403402 Msa1190970:CDS 50.0%
AGGGACCCAATGCAAATTGG+TGG - chr8_1:34403601-34403620 None:intergenic 50.0%
GGCTAGGGGTAATGCATTTC+AGG - chr8_1:34403677-34403696 None:intergenic 50.0%
GCAGGTTCAGTCCAGAAATC+AGG - chr8_1:34403938-34403957 None:intergenic 50.0%
AGCTAGTGGTGGCCAATATC+GGG + chr8_1:34404071-34404090 Msa1190970:CDS 50.0%
TGGCCAATATCGGGGATTCT+CGG + chr8_1:34404080-34404099 Msa1190970:CDS 50.0%
CGGGCTGTCTTATCTGAGAA+TGG + chr8_1:34404100-34404119 Msa1190970:CDS 50.0%
!! TACACCGAAGGTGTTGGACA+CGG - chr8_1:34404430-34404449 None:intergenic 50.0%
! TGTCTCTACACCGAAGGTGT+TGG - chr8_1:34404436-34404455 None:intergenic 50.0%
TCGATTCAGGGGATGTTCCA+CGG + chr8_1:34404603-34404622 Msa1190970:intron 50.0%
! GTGAAGACGATAGATGACGG+TGG + chr8_1:34404707-34404726 Msa1190970:CDS 50.0%
!! AGCCAGTGACGGATTATGGA+AGG + chr8_1:34404745-34404764 Msa1190970:CDS 50.0%
TGCCCATAAGGTGAGTGCAA+AGG - chr8_1:34404816-34404835 None:intergenic 50.0%
!! CTGAAGAAGCGCTTAACAGG+AGG + chr8_1:34405006-34405025 Msa1190970:CDS 50.0%
ACTTTCGTAACCTGTGCCCC+GGG + chr8_1:34402650-34402669 Msa1190970:intron 55.0%
GACCATCTGATCCGGACTCT+GGG + chr8_1:34403214-34403233 Msa1190970:CDS 55.0%
TTCCCAGAGTCCGGATCAGA+TGG - chr8_1:34403219-34403238 None:intergenic 55.0%
! TCTGATCCGGACTCTGGGAA+AGG + chr8_1:34403219-34403238 Msa1190970:CDS 55.0%
TGCATTACCCCTAGCCATGC+CGG + chr8_1:34403681-34403700 Msa1190970:intron 55.0%
! TTTGGAACCGGCATGGCTAG+GGG - chr8_1:34403691-34403710 None:intergenic 55.0%
! GTTTGGAACCGGCATGGCTA+GGG - chr8_1:34403692-34403711 None:intergenic 55.0%
! TGTTTGGAACCGGCATGGCT+AGG - chr8_1:34403693-34403712 None:intergenic 55.0%
GCTCTCTTCACACTATCCGC+AGG - chr8_1:34403956-34403975 None:intergenic 55.0%
GCTAGTGGTGGCCAATATCG+GGG + chr8_1:34404072-34404091 Msa1190970:CDS 55.0%
GGCCAATATCGGGGATTCTC+GGG + chr8_1:34404081-34404100 Msa1190970:CDS 55.0%
AGCCCGAGAATCCCCGATAT+TGG - chr8_1:34404086-34404105 None:intergenic 55.0%
GGTTCATGGTCAACCGACAG+TGG - chr8_1:34404136-34404155 None:intergenic 55.0%
TGTCCCGTGTCCAACACCTT+CGG + chr8_1:34404423-34404442 Msa1190970:intron 55.0%
!! ACACCGAAGGTGTTGGACAC+GGG - chr8_1:34404429-34404448 None:intergenic 55.0%
CGATTCAGGGGATGTTCCAC+GGG + chr8_1:34404604-34404623 Msa1190970:intron 55.0%
GCTAACTGTCCATCAACCCG+TGG - chr8_1:34404623-34404642 None:intergenic 55.0%
GGACCATCTGATCCGGACTC+TGG + chr8_1:34403213-34403232 Msa1190970:CDS 60.0%
! GGGGATGTTCCACGGGTTGA+TGG + chr8_1:34404611-34404630 Msa1190970:intron 60.0%
AACCTGTGCCCCGGGTGCAT+TGG + chr8_1:34402658-34402677 Msa1190970:intron 65.0%
AACCAATGCACCCGGGGCAC+AGG - chr8_1:34402663-34402682 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 34402075 34405326 34402075 ID=Msa1190970;Name=Msa1190970
chr8_1 mRNA 34402075 34405326 34402075 ID=Msa1190970-mRNA-1;Parent=Msa1190970;Name=Msa1190970-mRNA-1;_AED=0.15;_eAED=0.15;_QI=175|1|1|1|1|1|5|256|282
chr8_1 exon 34402075 34402282 34402075 ID=Msa1190970-mRNA-1:exon:11536;Parent=Msa1190970-mRNA-1
chr8_1 exon 34403201 34403446 34403201 ID=Msa1190970-mRNA-1:exon:11537;Parent=Msa1190970-mRNA-1
chr8_1 exon 34403935 34404211 34403935 ID=Msa1190970-mRNA-1:exon:11538;Parent=Msa1190970-mRNA-1
chr8_1 exon 34404612 34404766 34404612 ID=Msa1190970-mRNA-1:exon:11539;Parent=Msa1190970-mRNA-1
chr8_1 exon 34404933 34405326 34404933 ID=Msa1190970-mRNA-1:exon:11540;Parent=Msa1190970-mRNA-1
chr8_1 five_prime_UTR 34402075 34402249 34402075 ID=Msa1190970-mRNA-1:five_prime_utr;Parent=Msa1190970-mRNA-1
chr8_1 CDS 34402250 34402282 34402250 ID=Msa1190970-mRNA-1:cds;Parent=Msa1190970-mRNA-1
chr8_1 CDS 34403201 34403446 34403201 ID=Msa1190970-mRNA-1:cds;Parent=Msa1190970-mRNA-1
chr8_1 CDS 34403935 34404211 34403935 ID=Msa1190970-mRNA-1:cds;Parent=Msa1190970-mRNA-1
chr8_1 CDS 34404612 34404766 34404612 ID=Msa1190970-mRNA-1:cds;Parent=Msa1190970-mRNA-1
chr8_1 CDS 34404933 34405070 34404933 ID=Msa1190970-mRNA-1:cds;Parent=Msa1190970-mRNA-1
chr8_1 three_prime_UTR 34405071 34405326 34405071 ID=Msa1190970-mRNA-1:three_prime_utr;Parent=Msa1190970-mRNA-1
Gene Sequence

>Msa1190970

ATGACCGGCAAAGAAATCCTCCACAAGATGAAGGAGAAAGTTTTGGGACCATCTGATCCGGACTCTGGGAAAGGAAAGAGCAAGATGTCAAAGCATGTAACTCATGGCTTTCACTTGGTAAAGGGTCAATCAAATCATGCCATGGAAGACTACGTGGTTGCTGAATTCAAGCATGTTGATGACAACGAGTTGGGTTTATTTGCAATATTTGATGGTCACGCAGGTCATACTGTACCGGATTACTTGCGTTCTCATCTGTTTGATAATATCTTAAAAGAGCCTGATTTCTGGACTGAACCTGCGGATAGTGTGAAGAGAGCATATAAAGAAACTGATTCTACTATTTTAGAGAAATCAGGTGAATTGGGTAAAGGAGGTTCAACTGCAGTTACAGCAATACTAATTAATTGTCAGAAGCTAGTGGTGGCCAATATCGGGGATTCTCGGGCTGTCTTATCTGAGAATGGTGTTGCTATACCACTGTCGGTTGACCATGAACCAACAACAGAAAGCAGTGATATAAAAAACAGAGGTGGTTTTGTATCTAACTTTCCAGGGGATGTTCCACGGGTTGATGGACAGTTAGCAGTGTCAAGGGCATTTGGCGACAAAAGCCTAAAGGTACACATGACTTCAGAACCGCATGTGACAGTGAAGACGATAGATGACGGTGGAGAGTTCGTTATATTAGCCAGTGACGGATTATGGAAGGTCATGTCAAATCAAGAAGCAGTGGATGCTATCAAAGATATCAAGGATGCTCGGTCCGCAGCAAAGCATCTTACTGAAGAAGCGCTTAACAGGAGGAGCTCAGATGACATCTCTTGCGTTGTTGTGAGGTTTCACTGA

Protein sequence

>Msa1190970

MTGKEILHKMKEKVLGPSDPDSGKGKSKMSKHVTHGFHLVKGQSNHAMEDYVVAEFKHVDDNELGLFAIFDGHAGHTVPDYLRSHLFDNILKEPDFWTEPADSVKRAYKETDSTILEKSGELGKGGSTAVTAILINCQKLVVANIGDSRAVLSENGVAIPLSVDHEPTTESSDIKNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKVHMTSEPHVTVKTIDDGGEFVILASDGLWKVMSNQEAVDAIKDIKDARSAAKHLTEEALNRRSSDDISCVVVRFH*