AlfalfaGEDB | Msa1406780

M. sativa cultivar zhongmu-4 / Msa1406780

KEGG: -
GO: GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576
PFAM: PF04852.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	XP_013450572.1	97.647	170	3	1	1	169	1	170	3.41e-120	346

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	sp\|Q9FGH2\|LSH5_ARATH	70.423	142	36	4	26	163	18	157	1.68e-66	203

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	I3T2Z0	97.647	170	3	1	1	169	1	170	1.63e-120	346

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006980	Msa1406780	0.862827	3.845937e-64	-8.615850e-47
Msa0015710	Msa1406780	0.871537	6.337235e-67	-8.615850e-47
Msa0016120	Msa1406780	0.850264	1.899732e-60	-8.615850e-47
Msa0019600	Msa1406780	0.861193	1.218680e-63	-8.615850e-47
Msa0050040	Msa1406780	0.826164	3.153137e-54	-8.615850e-47
Msa0055450	Msa1406780	0.833580	4.914936e-56	-8.615850e-47
Msa0074800	Msa1406780	0.813313	2.726813e-51	-8.615850e-47
Msa0080990	Msa1406780	0.833246	5.955235e-56	-8.615850e-47
Msa0102990	Msa1406780	0.824788	6.675520e-54	-8.615850e-47
Msa0109880	Msa1406780	0.872556	2.903959e-67	-8.615850e-47
Msa0111750	Msa1406780	0.829381	5.313670e-55	-8.615850e-47
Msa1356990	Msa1406780	0.827516	1.498762e-54	-8.615850e-47
Msa1374550	Msa1406780	0.807664	4.525930e-50	-8.615850e-47
Msa1378870	Msa1406780	0.835590	1.536115e-56	-8.615850e-47
Msa1379970	Msa1406780	0.892924	1.013010e-74	-8.615850e-47
Msa1388770	Msa1406780	0.802546	5.330604e-49	-8.615850e-47
Msa1394890	Msa1406780	0.851490	8.579852e-61	-8.615850e-47
Msa1406780	Msa1420060	0.814663	1.373749e-51	-8.615850e-47
Msa1406780	Msa1421550	0.884793	1.415531e-71	-8.615850e-47
Msa1406780	Msa1423460	0.855541	5.888775e-62	-8.615850e-47
Msa1406780	Msa1431850	0.993804	2.409325e-202	-8.615850e-47
Msa1406780	Msa1435480	0.825561	4.383642e-54	-8.615850e-47
Msa1406780	Msa1437710	0.822044	2.923064e-53	-8.615850e-47
Msa1406780	Msa1449940	0.854505	1.176974e-61	-8.615850e-47
Msa1406780	Msa1455320	0.831364	1.740488e-55	-8.615850e-47
Msa1406780	Msa1459530	0.835291	1.827860e-56	-8.615850e-47
Msa1406780	Msa1461060	0.880762	4.203339e-70	-8.615850e-47
Msa1406780	Msa1462530	0.818583	1.817108e-52	-8.615850e-47
Msa0641250	Msa1406780	0.854223	1.419924e-61	-8.615850e-47
Msa0641360	Msa1406780	0.829213	5.837886e-55	-8.615850e-47
Msa0669840	Msa1406780	0.910375	2.010506e-82	-8.615850e-47
Msa0679830	Msa1406780	0.804829	1.790052e-49	-8.615850e-47
Msa0680150	Msa1406780	0.805262	1.453251e-49	-8.615850e-47
Msa0707220	Msa1406780	0.815388	9.482073e-52	-8.615850e-47
Msa0709450	Msa1406780	0.833194	6.133434e-56	-8.615850e-47
Msa0711320	Msa1406780	0.824635	7.254765e-54	-8.615850e-47
Msa0725860	Msa1406780	0.836710	7.976126e-57	-8.615850e-47
Msa0739580	Msa1406780	0.963500	3.679429e-122	-8.615850e-47
Msa0748000	Msa1406780	0.832685	8.207505e-56	-8.615850e-47
Msa0751890	Msa1406780	0.827528	1.488613e-54	-8.615850e-47
Msa0752840	Msa1406780	0.821731	3.454904e-53	-8.615850e-47
Msa0764820	Msa1406780	0.809243	2.083278e-50	-8.615850e-47
Msa0770290	Msa1406780	0.833394	5.468350e-56	-8.615850e-47
Msa0782230	Msa1406780	0.816653	4.949183e-52	-8.615850e-47
Msa0782360	Msa1406780	0.934956	1.804662e-96	-8.615850e-47
Msa0819890	Msa1406780	0.868285	7.313615e-66	-8.615850e-47
Msa0823400	Msa1406780	0.817209	3.713107e-52	-8.615850e-47
Msa0828830	Msa1406780	0.876659	1.171569e-68	-8.615850e-47
Msa0831940	Msa1406780	0.832353	9.922508e-56	-8.615850e-47
Msa0124130	Msa1406780	0.889714	1.891014e-73	-8.615850e-47
Msa0125170	Msa1406780	0.806152	9.449913e-50	-8.615850e-47
Msa0141120	Msa1406780	0.858298	9.069071e-63	-8.615850e-47
Msa0147600	Msa1406780	0.812421	4.276151e-51	-8.615850e-47
Msa0149140	Msa1406780	0.881924	1.600917e-70	-8.615850e-47
Msa0152500	Msa1406780	0.820543	6.488385e-53	-8.615850e-47
Msa0156250	Msa1406780	0.882347	1.124634e-70	-8.615850e-47
Msa0185490	Msa1406780	0.853142	2.905860e-61	-8.615850e-47
Msa0197100	Msa1406780	0.886524	3.173833e-72	-8.615850e-47
Msa0203030	Msa1406780	0.823987	1.030376e-53	-8.615850e-47
Msa0212080	Msa1406780	0.823465	1.364861e-53	-8.615850e-47
Msa0212150	Msa1406780	0.904902	7.546398e-80	-8.615850e-47
Msa0215640	Msa1406780	0.841073	5.925942e-58	-8.615850e-47
Msa0217230	Msa1406780	0.802252	6.126567e-49	-8.615850e-47
Msa0219190	Msa1406780	0.803765	2.982160e-49	-8.615850e-47
Msa0221290	Msa1406780	0.827311	1.678278e-54	-8.615850e-47
Msa1228190	Msa1406780	0.880043	7.595410e-70	-8.615850e-47
Msa1233560	Msa1406780	0.844063	9.530773e-59	-8.615850e-47
Msa1271260	Msa1406780	0.852176	5.480934e-61	-8.615850e-47
Msa1277400	Msa1406780	0.825427	4.714763e-54	-8.615850e-47
Msa1285900	Msa1406780	0.812016	5.240180e-51	-8.615850e-47
Msa1294290	Msa1406780	0.874964	4.472268e-68	-8.615850e-47
Msa1305310	Msa1406780	0.820112	8.146611e-53	-8.615850e-47
Msa1305510	Msa1406780	0.874001	9.496864e-68	-8.615850e-47
Msa1307150	Msa1406780	0.810531	1.100582e-50	-8.615850e-47
Msa1307190	Msa1406780	0.839721	1.337394e-57	-8.615850e-47
Msa1313970	Msa1406780	0.813464	2.526258e-51	-8.615850e-47
Msa1316540	Msa1406780	0.810424	1.160618e-50	-8.615850e-47
Msa1326630	Msa1406780	0.815172	1.059158e-51	-8.615850e-47
Msa1336780	Msa1406780	0.804430	2.168386e-49	-8.615850e-47
Msa1339580	Msa1406780	0.812103	5.017492e-51	-8.615850e-47
Msa0373960	Msa1406780	0.827307	1.681310e-54	-8.615850e-47
Msa0375680	Msa1406780	0.837625	4.655161e-57	-8.615850e-47
Msa0384910	Msa1406780	0.856027	4.244727e-62	-8.615850e-47
Msa0385390	Msa1406780	0.805509	1.289733e-49	-8.615850e-47
Msa0392420	Msa1406780	0.847936	8.434402e-60	-8.615850e-47
Msa0392460	Msa1406780	0.844571	6.962071e-59	-8.615850e-47
Msa0392490	Msa1406780	0.822949	1.801305e-53	-8.615850e-47
Msa0406000	Msa1406780	0.929832	3.944277e-93	-8.615850e-47
Msa0415320	Msa1406780	0.812036	5.187675e-51	-8.615850e-47
Msa0417440	Msa1406780	0.810632	1.046521e-50	-8.615850e-47
Msa0424330	Msa1406780	0.871827	5.077484e-67	-8.615850e-47
Msa0424340	Msa1406780	0.873826	1.088434e-67	-8.615850e-47
Msa0424350	Msa1406780	0.874251	7.812439e-68	-8.615850e-47
Msa0436500	Msa1406780	0.800500	1.400211e-48	-8.615850e-47
Msa0441590	Msa1406780	0.807517	4.863812e-50	-8.615850e-47
Msa0451400	Msa1406780	0.929646	5.152599e-93	-8.615850e-47
Msa0469260	Msa1406780	0.807341	5.299774e-50	-8.615850e-47
Msa0471240	Msa1406780	0.823744	1.174404e-53	-8.615850e-47
Msa0477460	Msa1406780	0.803235	3.841127e-49	-8.615850e-47
Msa0479540	Msa1406780	0.811811	5.808306e-51	-8.615850e-47
Msa0996270	Msa1406780	0.823955	1.047976e-53	-8.615850e-47
Msa0999300	Msa1406780	0.874136	8.549842e-68	-8.615850e-47
Msa0999320	Msa1406780	0.836493	9.061927e-57	-8.615850e-47
Msa0999350	Msa1406780	0.825689	4.088660e-54	-8.615850e-47
Msa0999360	Msa1406780	0.817896	2.599459e-52	-8.615850e-47
Msa0999400	Msa1406780	0.815640	8.335833e-52	-8.615850e-47
Msa0999410	Msa1406780	0.820390	7.034897e-53	-8.615850e-47
Msa1001870	Msa1406780	0.837076	6.432592e-57	-8.615850e-47
Msa1001890	Msa1406780	0.849713	2.710382e-60	-8.615850e-47
Msa1010840	Msa1406780	0.808958	2.398194e-50	-8.615850e-47
Msa1016600	Msa1406780	0.814270	1.677875e-51	-8.615850e-47
Msa1023130	Msa1406780	0.802120	6.524172e-49	-8.615850e-47
Msa1034680	Msa1406780	0.812021	5.228040e-51	-8.615850e-47
Msa1037770	Msa1406780	0.869850	2.272551e-66	-8.615850e-47
Msa1037890	Msa1406780	0.825653	4.168727e-54	-8.615850e-47
Msa1037900	Msa1406780	0.846596	1.966501e-59	-8.615850e-47
Msa1037910	Msa1406780	0.848886	4.603772e-60	-8.615850e-47
Msa1041530	Msa1406780	0.826588	2.498561e-54	-8.615850e-47
Msa1047990	Msa1406780	0.800970	1.122613e-48	-8.615850e-47
Msa1052360	Msa1406780	0.804279	2.331584e-49	-8.615850e-47
Msa1081570	Msa1406780	0.842498	2.492512e-58	-8.615850e-47
Msa1084520	Msa1406780	0.851714	7.411831e-61	-8.615850e-47
Msa1092020	Msa1406780	0.817550	3.111117e-52	-8.615850e-47
Msa1096210	Msa1406780	0.820255	7.554008e-53	-8.615850e-47
Msa0239030	Msa1406780	0.895685	7.578900e-76	-8.615850e-47
Msa0252630	Msa1406780	0.836274	1.030071e-56	-8.615850e-47
Msa0252770	Msa1406780	0.907187	6.643749e-81	-8.615850e-47
Msa0276080	Msa1406780	0.800213	1.601393e-48	-8.615850e-47
Msa0276740	Msa1406780	0.872837	2.339399e-67	-8.615850e-47
Msa0289920	Msa1406780	0.897770	1.018352e-76	-8.615850e-47
Msa0291330	Msa1406780	0.805399	1.360413e-49	-8.615850e-47
Msa0298240	Msa1406780	0.800504	1.397269e-48	-8.615850e-47
Msa0306120	Msa1406780	0.919477	4.285965e-87	-8.615850e-47
Msa0316680	Msa1406780	0.883583	3.967639e-71	-8.615850e-47
Msa0322830	Msa1406780	0.812386	4.352742e-51	-8.615850e-47
Msa0322840	Msa1406780	0.828903	6.938055e-55	-8.615850e-47
Msa0322860	Msa1406780	0.812850	3.444761e-51	-8.615850e-47
Msa0329620	Msa1406780	0.912700	1.442552e-83	-8.615850e-47
Msa0333450	Msa1406780	0.824521	7.715880e-54	-8.615850e-47
Msa0333700	Msa1406780	0.842618	2.317034e-58	-8.615850e-47
Msa0338970	Msa1406780	0.813227	2.847793e-51	-8.615850e-47
Msa0340480	Msa1406780	0.823509	1.332829e-53	-8.615850e-47
Msa0343660	Msa1406780	0.866064	3.745560e-65	-8.615850e-47
Msa0344570	Msa1406780	0.807657	4.541978e-50	-8.615850e-47
Msa0351770	Msa1406780	0.813419	2.584092e-51	-8.615850e-47
Msa0359250	Msa1406780	0.922104	1.515899e-88	-8.615850e-47
Msa1125810	Msa1406780	0.822034	2.939196e-53	-8.615850e-47
Msa1127140	Msa1406780	0.849798	2.565798e-60	-8.615850e-47
Msa1129960	Msa1406780	0.839415	1.606425e-57	-8.615850e-47
Msa1129970	Msa1406780	0.842442	2.580109e-58	-8.615850e-47
Msa1130010	Msa1406780	0.825962	3.520320e-54	-8.615850e-47
Msa1135380	Msa1406780	0.830565	2.733625e-55	-8.615850e-47
Msa1140640	Msa1406780	0.822618	2.151299e-53	-8.615850e-47
Msa1145020	Msa1406780	0.831267	1.838688e-55	-8.615850e-47
Msa1166400	Msa1406780	0.838666	2.510544e-57	-8.615850e-47
Msa1171310	Msa1406780	0.839142	1.891336e-57	-8.615850e-47
Msa1173310	Msa1406780	0.808112	3.634093e-50	-8.615850e-47
Msa1176160	Msa1406780	0.844969	5.439820e-59	-8.615850e-47
Msa1176580	Msa1406780	0.807013	6.219264e-50	-8.615850e-47
Msa1179280	Msa1406780	0.811072	8.405877e-51	-8.615850e-47
Msa1200440	Msa1406780	0.814838	1.256296e-51	-8.615850e-47
Msa1201110	Msa1406780	0.860861	1.537766e-63	-8.615850e-47
Msa1201160	Msa1406780	0.890693	7.820168e-74	-8.615850e-47
Msa0487570	Msa1406780	0.843650	1.229803e-58	-8.615850e-47
Msa0487630	Msa1406780	0.832242	1.057337e-55	-8.615850e-47
Msa0492190	Msa1406780	0.912969	1.058618e-83	-8.615850e-47
Msa0515950	Msa1406780	0.886614	2.933574e-72	-8.615850e-47
Msa0534930	Msa1406780	0.854033	1.610845e-61	-8.615850e-47
Msa0535040	Msa1406780	0.832622	8.510522e-56	-8.615850e-47
Msa0537920	Msa1406780	0.837648	4.591565e-57	-8.615850e-47
Msa0538220	Msa1406780	0.828380	9.285472e-55	-8.615850e-47
Msa0575740	Msa1406780	0.827066	1.920578e-54	-8.615850e-47
Msa0591790	Msa1406780	0.873438	1.470635e-67	-8.615850e-47
Msa0591800	Msa1406780	0.800659	1.299223e-48	-8.615850e-47
Msa0594090	Msa1406780	0.891800	2.851612e-74	-8.615850e-47
Msa0844560	Msa1406780	0.806872	6.661371e-50	-8.615850e-47
Msa0849280	Msa1406780	0.849675	2.776824e-60	-8.615850e-47
Msa0851020	Msa1406780	0.855484	6.117281e-62	-8.615850e-47
Msa0860160	Msa1406780	0.842775	2.104748e-58	-8.615850e-47
Msa0860280	Msa1406780	0.942732	4.264540e-102	-8.615850e-47
Msa0867350	Msa1406780	0.866421	2.887114e-65	-8.615850e-47
Msa0896350	Msa1406780	0.804501	2.095319e-49	-8.615850e-47
Msa0898730	Msa1406780	0.872145	3.983298e-67	-8.615850e-47
Msa0916640	Msa1406780	0.815237	1.024795e-51	-8.615850e-47
Msa0922750	Msa1406780	0.810342	1.208700e-50	-8.615850e-47
Msa0929870	Msa1406780	0.848561	5.667282e-60	-8.615850e-47
Msa0944760	Msa1406780	0.862357	5.367287e-64	-8.615850e-47
Msa0944880	Msa1406780	0.840360	9.115530e-58	-8.615850e-47
Msa0946210	Msa1406780	0.806212	9.181200e-50	-8.615850e-47
Msa0953540	Msa1406780	0.820022	8.541761e-53	-8.615850e-47
Msa0961560	Msa1406780	0.835580	1.544639e-56	-8.615850e-47
Msa0964840	Msa1406780	0.810474	1.132122e-50	-8.615850e-47
Msa0979510	Msa1406780	0.811001	8.710582e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	MtrunA17_Chr7g0274631	97.647	170	3	1	1	169	1	170	3.14e-124	346
Msa1406780	MtrunA17_Chr5g0431211	72.263	137	31	4	26	158	36	169	8.43e-68	205
Msa1406780	MtrunA17_Chr4g0051251	68.571	140	37	4	25	160	44	180	2.27e-64	197
Msa1406780	MtrunA17_Chr1g0167411	73.438	128	28	3	27	151	65	189	3.21e-64	196
Msa1406780	MtrunA17_Chr2g0283861	71.318	129	31	3	25	150	33	158	7.14e-63	191
Msa1406780	MtrunA17_Chr1g0190231	73.288	146	33	3	27	169	40	182	1.66e-62	191
Msa1406780	MtrunA17_Chr2g0325831	65.306	147	45	3	16	159	12	155	3.45e-62	189
Msa1406780	MtrunA17_Chr2g0315791	68.217	129	35	3	25	150	31	156	4.06e-60	184
Msa1406780	MtrunA17_Chr1g0187671	70.213	141	36	3	19	156	45	182	7.23e-60	184
Msa1406780	MtrunA17_Chr4g0041141	66.667	129	37	3	25	150	27	152	1.41e-59	183
Msa1406780	MtrunA17_Chr7g0261381	72.263	137	32	3	23	156	60	193	3.61e-59	183
Msa1406780	MtrunA17_Chr1g0183761	73.684	133	29	3	27	156	45	174	1.18e-58	182
Msa1406780	MtrunA17_Chr3g0105921	68.276	145	39	4	27	167	42	183	1.15e-56	177
Msa1406780	MtrunA17_Chr8g0379061	68.462	130	33	4	25	150	83	208	5.48e-47	153
Msa1406780	MtrunA17_Chr1g0211641	71.739	46	12	1	20	65	64	108	6.14e-18	74.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	AT5G58500.1	70.423	142	36	4	26	163	18	157	1.71e-67	203
Msa1406780	AT1G07090.1	65.493	142	43	3	26	164	30	168	1.55e-64	196
Msa1406780	AT5G28490.1	76.471	136	26	3	27	159	25	157	1.67e-62	191
Msa1406780	AT3G04510.1	70.714	140	35	3	27	163	33	169	8.90e-60	184
Msa1406780	AT2G42610.1	67.969	128	35	3	26	150	24	148	2.65e-59	182
Msa1406780	AT2G42610.2	67.969	128	35	3	26	150	24	148	2.65e-59	182
Msa1406780	AT2G31160.1	75.556	135	26	4	27	157	54	185	4.71e-58	181
Msa1406780	AT4G18610.1	65.116	129	38	3	26	150	36	161	2.26e-57	178
Msa1406780	AT3G23290.2	75.573	131	26	3	23	150	44	171	2.79e-57	178
Msa1406780	AT1G78815.1	63.566	129	41	3	25	150	38	163	3.08e-55	173
Msa1406780	AT1G16910.1	58.955	134	49	3	25	155	21	151	3.35e-52	164

Find 48 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCACTACCTTGATCAATT+TGG	0.137888	tig0023244:+20147	Msa1406780:CDS
AATCCAACTTGTCCTTTCTT+TGG	0.215866	tig0023244:+20186	Msa1406780:CDS
TGTTCCAGTCTCTCCTCTTT+TGG	0.217847	tig0023244:-20044	None:intergenic
ATCCAACTTGTCCTTTCTTT+GGG	0.324334	tig0023244:+20187	Msa1406780:CDS
TTCACTACCTTGATCAATTT+GGG	0.326576	tig0023244:+20148	Msa1406780:CDS
TTGTCCTCTCCGTCAGGCTT+GGG	0.343185	tig0023244:+20236	Msa1406780:CDS
CTTGTCCTCTCCGTCAGGCT+TGG	0.356689	tig0023244:+20235	Msa1406780:CDS
CATGGTGGAAGTAACCCTTT+TGG	0.395005	tig0023244:+20312	Msa1406780:CDS
GCACATGGAGATGGAGGGTT+TGG	0.411549	tig0023244:-20213	None:intergenic
CACTTCCATTGTAGCTGCTA+GGG	0.441671	tig0023244:-19984	None:intergenic
GTCGATGGTTTCTTAAGTAC+TGG	0.444811	tig0023244:-20074	None:intergenic
ATGTGCTTGTCCTCTCCGTC+AGG	0.459665	tig0023244:+20230	Msa1406780:CDS
TGATCAATTTGGGAAGACTA+AGG	0.465045	tig0023244:+20158	Msa1406780:CDS
GTGGTGGCAACAAGATCAAC+AGG	0.470799	tig0023244:+20013	Msa1406780:CDS
CTAACAGCGCCATCACCAAA+AGG	0.486109	tig0023244:-20327	None:intergenic
GAGTTAGCTACCATAAGAAA+AGG	0.502671	tig0023244:+20394	Msa1406780:CDS
TAGTCTTCCCAAATTGATCA+AGG	0.503689	tig0023244:-20155	None:intergenic
GTAGTTGTGATGTTGCGGTT+AGG	0.503903	tig0023244:-20423	None:intergenic
AGAGCCAAAAGAGGAGAGAC+TGG	0.512337	tig0023244:+20040	Msa1406780:CDS
GCTTATGATCAAGAGATTCA+TGG	0.517251	tig0023244:+20294	Msa1406780:CDS
ATTGAAGCAGAAAGTGGTAC+TGG	0.535622	tig0023244:-20096	None:intergenic
TCACTTCCATTGTAGCTGCT+AGG	0.535763	tig0023244:-19985	None:intergenic
TTATACAAGAAATATGGCAT+TGG	0.537262	tig0023244:+19942	None:intergenic
CTTTCTGCTTCAATGTGCAA+TGG	0.545802	tig0023244:+20105	Msa1406780:CDS
TGTCCTCTCCGTCAGGCTTG+GGG	0.552431	tig0023244:+20237	Msa1406780:CDS
GGTAGCCTTGATGCTCTCAT+CGG	0.556787	tig0023244:+20258	Msa1406780:CDS
AGAGGACAAGCACATGGAGA+TGG	0.557220	tig0023244:-20222	None:intergenic
CAAATTGATCAAGGTAGTGA+AGG	0.557585	tig0023244:-20146	None:intergenic
GGGTTTGGCATCCCAAAGAA+AGG	0.560750	tig0023244:-20198	None:intergenic
ACAAACCCTAGCAGCTACAA+TGG	0.562580	tig0023244:+19979	Msa1406780:CDS
TTGCACATTGAAGCAGAAAG+TGG	0.564133	tig0023244:-20102	None:intergenic
TAACAGCGCCATCACCAAAA+GGG	0.569402	tig0023244:-20326	None:intergenic
CATGACAAATAGAAATCAAG+AGG	0.576026	tig0023244:-20457	None:intergenic
GGACAAGCACATGGAGATGG+AGG	0.578694	tig0023244:-20219	None:intergenic
ATCCCAAAGAAAGGACAAGT+TGG	0.587746	tig0023244:-20189	None:intergenic
CAGAAAGTGGTACTGGTCGA+TGG	0.588396	tig0023244:-20089	None:intergenic
GAGAAGTAGTTGTGATGTTG+CGG	0.588969	tig0023244:-20428	None:intergenic
CAAGGCTACCCCAAGCCTGA+CGG	0.597531	tig0023244:-20245	None:intergenic
ACAGGTACGAGAGCCAAAAG+AGG	0.613687	tig0023244:+20031	Msa1406780:CDS
TGACGGAGAGGACAAGCACA+TGG	0.624357	tig0023244:-20228	None:intergenic
AATGGAAGTGATTCAAGTGG+TGG	0.625867	tig0023244:+19997	Msa1406780:CDS
GGCGACCGATGAGAGCATCA+AGG	0.637841	tig0023244:-20263	None:intergenic
GACAAGCACATGGAGATGGA+GGG	0.652537	tig0023244:-20218	None:intergenic
CTACCCCAAGCCTGACGGAG+AGG	0.655871	tig0023244:-20240	None:intergenic
TACAATGGAAGTGATTCAAG+TGG	0.673612	tig0023244:+19994	Msa1406780:CDS
CTTGATCATAAGCAGCGCGG+AGG	0.674942	tig0023244:-20284	None:intergenic
TATGATCAAGAGATTCATGG+TGG	0.715975	tig0023244:+20297	Msa1406780:CDS
TCTCTTGATCATAAGCAGCG+CGG	0.775865	tig0023244:-20287	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TTCACTACCTTGATCAATTT+GGG	+	tig0023244:20148-20167	Msa1406780:CDS	30.0%
	TACAATGGAAGTGATTCAAG+TGG	+	tig0023244:19994-20013	Msa1406780:CDS	35.0%
	CAAATTGATCAAGGTAGTGA+AGG	-	tig0023244:20149-20168	None:intergenic	35.0%
	CTTCACTACCTTGATCAATT+TGG	+	tig0023244:20147-20166	Msa1406780:CDS	35.0%
	TAGTCTTCCCAAATTGATCA+AGG	-	tig0023244:20158-20177	None:intergenic	35.0%
	TGATCAATTTGGGAAGACTA+AGG	+	tig0023244:20158-20177	Msa1406780:CDS	35.0%
	AATCCAACTTGTCCTTTCTT+TGG	+	tig0023244:20186-20205	Msa1406780:CDS	35.0%
	ATCCAACTTGTCCTTTCTTT+GGG	+	tig0023244:20187-20206	Msa1406780:CDS	35.0%
	GCTTATGATCAAGAGATTCA+TGG	+	tig0023244:20294-20313	Msa1406780:CDS	35.0%
	TATGATCAAGAGATTCATGG+TGG	+	tig0023244:20297-20316	Msa1406780:CDS	35.0%
!	TGTTCGTGATTTTCAGTCAA+AGG	+	tig0023244:20365-20384	Msa1406780:CDS	35.0%
	GAGTTAGCTACCATAAGAAA+AGG	+	tig0023244:20394-20413	Msa1406780:CDS	35.0%
!	TAGGTCTCTTCCTTTTCTTA+TGG	-	tig0023244:20407-20426	None:intergenic	35.0%
	AATGGAAGTGATTCAAGTGG+TGG	+	tig0023244:19997-20016	Msa1406780:CDS	40.0%
	GTCGATGGTTTCTTAAGTAC+TGG	-	tig0023244:20077-20096	None:intergenic	40.0%
	ATTGAAGCAGAAAGTGGTAC+TGG	-	tig0023244:20099-20118	None:intergenic	40.0%
	TTGCACATTGAAGCAGAAAG+TGG	-	tig0023244:20105-20124	None:intergenic	40.0%
	CTTTCTGCTTCAATGTGCAA+TGG	+	tig0023244:20105-20124	Msa1406780:CDS	40.0%
	ATCCCAAAGAAAGGACAAGT+TGG	-	tig0023244:20192-20211	None:intergenic	40.0%
!	GATTTTCAGTCAAAGGCTAG+AGG	+	tig0023244:20372-20391	Msa1406780:CDS	40.0%
	GAGAAGTAGTTGTGATGTTG+CGG	-	tig0023244:20431-20450	None:intergenic	40.0%
	ACAAACCCTAGCAGCTACAA+TGG	+	tig0023244:19979-19998	Msa1406780:CDS	45.0%
	CACTTCCATTGTAGCTGCTA+GGG	-	tig0023244:19987-20006	None:intergenic	45.0%
	TCACTTCCATTGTAGCTGCT+AGG	-	tig0023244:19988-20007	None:intergenic	45.0%
!	TGTTCCAGTCTCTCCTCTTT+TGG	-	tig0023244:20047-20066	None:intergenic	45.0%
	TCTCTTGATCATAAGCAGCG+CGG	-	tig0023244:20290-20309	None:intergenic	45.0%
!!	CATGGTGGAAGTAACCCTTT+TGG	+	tig0023244:20312-20331	Msa1406780:CDS	45.0%
!	GGAAGTAACCCTTTTGGTGA+TGG	+	tig0023244:20318-20337	Msa1406780:CDS	45.0%
	TAACAGCGCCATCACCAAAA+GGG	-	tig0023244:20329-20348	None:intergenic	45.0%
	GTAGTTGTGATGTTGCGGTT+AGG	-	tig0023244:20426-20445	None:intergenic	45.0%
	GTGGTGGCAACAAGATCAAC+AGG	+	tig0023244:20013-20032	Msa1406780:CDS	50.0%
	ACAGGTACGAGAGCCAAAAG+AGG	+	tig0023244:20031-20050	Msa1406780:CDS	50.0%
	AGAGCCAAAAGAGGAGAGAC+TGG	+	tig0023244:20040-20059	Msa1406780:CDS	50.0%
!!	CAGAAAGTGGTACTGGTCGA+TGG	-	tig0023244:20092-20111	None:intergenic	50.0%
	GGGTTTGGCATCCCAAAGAA+AGG	-	tig0023244:20201-20220	None:intergenic	50.0%
	GACAAGCACATGGAGATGGA+GGG	-	tig0023244:20221-20240	None:intergenic	50.0%
	AGAGGACAAGCACATGGAGA+TGG	-	tig0023244:20225-20244	None:intergenic	50.0%
!	GGTAGCCTTGATGCTCTCAT+CGG	+	tig0023244:20258-20277	Msa1406780:CDS	50.0%
	CTAACAGCGCCATCACCAAA+AGG	-	tig0023244:20330-20349	None:intergenic	50.0%
!!!	CTTTTGGTGATGGCGCTGTT+AGG	+	tig0023244:20328-20347	Msa1406780:CDS	50.0%
	GCACATGGAGATGGAGGGTT+TGG	-	tig0023244:20216-20235	None:intergenic	55.0%
	GGACAAGCACATGGAGATGG+AGG	-	tig0023244:20222-20241	None:intergenic	55.0%
	TGACGGAGAGGACAAGCACA+TGG	-	tig0023244:20231-20250	None:intergenic	55.0%
	ATGTGCTTGTCCTCTCCGTC+AGG	+	tig0023244:20230-20249	Msa1406780:CDS	55.0%
	TTGTCCTCTCCGTCAGGCTT+GGG	+	tig0023244:20236-20255	Msa1406780:CDS	55.0%
	CTTGATCATAAGCAGCGCGG+AGG	-	tig0023244:20287-20306	None:intergenic	55.0%
	CTTGTCCTCTCCGTCAGGCT+TGG	+	tig0023244:20235-20254	Msa1406780:CDS	60.0%
	TGTCCTCTCCGTCAGGCTTG+GGG	+	tig0023244:20237-20256	Msa1406780:CDS	60.0%
	CAAGGCTACCCCAAGCCTGA+CGG	-	tig0023244:20248-20267	None:intergenic	60.0%
!!	GGCGACCGATGAGAGCATCA+AGG	-	tig0023244:20266-20285	None:intergenic	60.0%
	CTACCCCAAGCCTGACGGAG+AGG	-	tig0023244:20243-20262	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
tig0023244	gene	19955	20464	19955	ID=Msa1406780;Name=Msa1406780
tig0023244	mRNA	19955	20464	19955	ID=Msa1406780-mRNA-1;Parent=Msa1406780;Name=Msa1406780-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|169
tig0023244	exon	19955	20464	19955	ID=Msa1406780-mRNA-1:exon:24751;Parent=Msa1406780-mRNA-1
tig0023244	CDS	19955	20464	19955	ID=Msa1406780-mRNA-1:cds;Parent=Msa1406780-mRNA-1

Gene Sequence

>Msa1406780

ATGGCATTGGTTTCAGCTGAATCAACAAACCCTAGCAGCTACAATGGAAGTGATTCAAGTGGTGGCAACAAGATCAACAGGTACGAGAGCCAAAAGAGGAGAGACTGGAACACATTCTGCCAGTACTTAAGAAACCATCGACCAGTACCACTTTCTGCTTCAATGTGCAATGGAACTCATGTTCTTGAATTCCTTCACTACCTTGATCAATTTGGGAAGACTAAGGTTCACAATCCAACTTGTCCTTTCTTTGGGATGCCAAACCCTCCATCTCCATGTGCTTGTCCTCTCCGTCAGGCTTGGGGTAGCCTTGATGCTCTCATCGGTCGCCTCCGCGCTGCTTATGATCAAGAGATTCATGGTGGAAGTAACCCTTTTGGTGATGGCGCTGTTAGGTTTTACTTGCGTGATGTTCGTGATTTTCAGTCAAAGGCTAGAGGAGTTAGCTACCATAAGAAAAGGAAGAGACCTAACCGCAACATCACAACTACTTCTCAATCATCCTCTTGA

Protein sequence

>Msa1406780

MALVSAESTNPSSYNGSDSSGGNKINRYESQKRRDWNTFCQYLRNHRPVPLSASMCNGTHVLEFLHYLDQFGKTKVHNPTCPFFGMPNPPSPCACPLRQAWGSLDALIGRLRAAYDQEIHGGSNPFGDGAVRFYLRDVRDFQSKARGVSYHKKRKRPNRNITTTSQSSS*