AlfalfaGEDB | Msa1406780

M. sativa cultivar zhongmu-4 / Msa1406780

KEGG: -
GO: GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576
PFAM: PF04852.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	XP_013450572.1	97.647	170	3	1	1	169	1	170	3.41e-120	346

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	sp\|Q9FGH2\|LSH5_ARATH	70.423	142	36	4	26	163	18	157	1.68e-66	203

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	I3T2Z0	97.647	170	3	1	1	169	1	170	1.63e-120	346

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006980	Msa1406780	0.862827	3.845937e-64	-8.615850e-47
Msa0015710	Msa1406780	0.871537	6.337235e-67	-8.615850e-47
Msa0016120	Msa1406780	0.850264	1.899732e-60	-8.615850e-47
Msa0019600	Msa1406780	0.861193	1.218680e-63	-8.615850e-47
Msa0050040	Msa1406780	0.826164	3.153137e-54	-8.615850e-47
Msa0055450	Msa1406780	0.833580	4.914936e-56	-8.615850e-47
Msa0074800	Msa1406780	0.813313	2.726813e-51	-8.615850e-47
Msa0080990	Msa1406780	0.833246	5.955235e-56	-8.615850e-47
Msa0102990	Msa1406780	0.824788	6.675520e-54	-8.615850e-47
Msa0109880	Msa1406780	0.872556	2.903959e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	MtrunA17_Chr7g0274631	97.647	170	3	1	1	169	1	170	3.14e-124	346
Msa1406780	MtrunA17_Chr5g0431211	72.263	137	31	4	26	158	36	169	8.43e-68	205
Msa1406780	MtrunA17_Chr4g0051251	68.571	140	37	4	25	160	44	180	2.27e-64	197
Msa1406780	MtrunA17_Chr1g0167411	73.438	128	28	3	27	151	65	189	3.21e-64	196
Msa1406780	MtrunA17_Chr2g0283861	71.318	129	31	3	25	150	33	158	7.14e-63	191
Msa1406780	MtrunA17_Chr1g0190231	73.288	146	33	3	27	169	40	182	1.66e-62	191
Msa1406780	MtrunA17_Chr2g0325831	65.306	147	45	3	16	159	12	155	3.45e-62	189
Msa1406780	MtrunA17_Chr2g0315791	68.217	129	35	3	25	150	31	156	4.06e-60	184
Msa1406780	MtrunA17_Chr1g0187671	70.213	141	36	3	19	156	45	182	7.23e-60	184
Msa1406780	MtrunA17_Chr4g0041141	66.667	129	37	3	25	150	27	152	1.41e-59	183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406780	AT5G58500.1	70.423	142	36	4	26	163	18	157	1.71e-67	203
Msa1406780	AT1G07090.1	65.493	142	43	3	26	164	30	168	1.55e-64	196
Msa1406780	AT5G28490.1	76.471	136	26	3	27	159	25	157	1.67e-62	191
Msa1406780	AT3G04510.1	70.714	140	35	3	27	163	33	169	8.90e-60	184
Msa1406780	AT2G42610.1	67.969	128	35	3	26	150	24	148	2.65e-59	182
Msa1406780	AT2G42610.2	67.969	128	35	3	26	150	24	148	2.65e-59	182
Msa1406780	AT2G31160.1	75.556	135	26	4	27	157	54	185	4.71e-58	181
Msa1406780	AT4G18610.1	65.116	129	38	3	26	150	36	161	2.26e-57	178
Msa1406780	AT3G23290.2	75.573	131	26	3	23	150	44	171	2.79e-57	178
Msa1406780	AT1G78815.1	63.566	129	41	3	25	150	38	163	3.08e-55	173

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Find 48 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCCAACTTGTCCTTTCTT+TGG	0.215866	tig0023244:+20186	Msa1406780:CDS
AATGGAAGTGATTCAAGTGG+TGG	0.625867	tig0023244:+19997	Msa1406780:CDS
ACAAACCCTAGCAGCTACAA+TGG	0.562580	tig0023244:+19979	Msa1406780:CDS
ACAGGTACGAGAGCCAAAAG+AGG	0.613687	tig0023244:+20031	Msa1406780:CDS
AGAGCCAAAAGAGGAGAGAC+TGG	0.512337	tig0023244:+20040	Msa1406780:CDS
AGAGGACAAGCACATGGAGA+TGG	0.557220	tig0023244:-20222	None:intergenic
ATCCAACTTGTCCTTTCTTT+GGG	0.324334	tig0023244:+20187	Msa1406780:CDS
ATCCCAAAGAAAGGACAAGT+TGG	0.587746	tig0023244:-20189	None:intergenic
ATGTGCTTGTCCTCTCCGTC+AGG	0.459665	tig0023244:+20230	Msa1406780:CDS
ATTGAAGCAGAAAGTGGTAC+TGG	0.535622	tig0023244:-20096	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCACTACCTTGATCAATTT+GGG	+	tig0023244:20148-20167	Msa1406780:CDS	30.0%
TACAATGGAAGTGATTCAAG+TGG	+	tig0023244:19994-20013	Msa1406780:CDS	35.0%
CAAATTGATCAAGGTAGTGA+AGG	-	tig0023244:20149-20168	None:intergenic	35.0%
CTTCACTACCTTGATCAATT+TGG	+	tig0023244:20147-20166	Msa1406780:CDS	35.0%
TAGTCTTCCCAAATTGATCA+AGG	-	tig0023244:20158-20177	None:intergenic	35.0%
TGATCAATTTGGGAAGACTA+AGG	+	tig0023244:20158-20177	Msa1406780:CDS	35.0%
AATCCAACTTGTCCTTTCTT+TGG	+	tig0023244:20186-20205	Msa1406780:CDS	35.0%
ATCCAACTTGTCCTTTCTTT+GGG	+	tig0023244:20187-20206	Msa1406780:CDS	35.0%
GCTTATGATCAAGAGATTCA+TGG	+	tig0023244:20294-20313	Msa1406780:CDS	35.0%
TATGATCAAGAGATTCATGG+TGG	+	tig0023244:20297-20316	Msa1406780:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023244	gene	19955	20464	19955	ID=Msa1406780;Name=Msa1406780
tig0023244	mRNA	19955	20464	19955	ID=Msa1406780-mRNA-1;Parent=Msa1406780;Name=Msa1406780-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|169
tig0023244	exon	19955	20464	19955	ID=Msa1406780-mRNA-1:exon:24751;Parent=Msa1406780-mRNA-1
tig0023244	CDS	19955	20464	19955	ID=Msa1406780-mRNA-1:cds;Parent=Msa1406780-mRNA-1

Gene Sequence

>Msa1406780

ATGGCATTGGTTTCAGCTGAATCAACAAACCCTAGCAGCTACAATGGAAGTGATTCAAGTGGTGGCAACAAGATCAACAGGTACGAGAGCCAAAAGAGGAGAGACTGGAACACATTCTGCCAGTACTTAAGAAACCATCGACCAGTACCACTTTCTGCTTCAATGTGCAATGGAACTCATGTTCTTGAATTCCTTCACTACCTTGATCAATTTGGGAAGACTAAGGTTCACAATCCAACTTGTCCTTTCTTTGGGATGCCAAACCCTCCATCTCCATGTGCTTGTCCTCTCCGTCAGGCTTGGGGTAGCCTTGATGCTCTCATCGGTCGCCTCCGCGCTGCTTATGATCAAGAGATTCATGGTGGAAGTAACCCTTTTGGTGATGGCGCTGTTAGGTTTTACTTGCGTGATGTTCGTGATTTTCAGTCAAAGGCTAGAGGAGTTAGCTACCATAAGAAAAGGAAGAGACCTAACCGCAACATCACAACTACTTCTCAATCATCCTCTTGA

Protein sequence

>Msa1406780

MALVSAESTNPSSYNGSDSSGGNKINRYESQKRRDWNTFCQYLRNHRPVPLSASMCNGTHVLEFLHYLDQFGKTKVHNPTCPFFGMPNPPSPCACPLRQAWGSLDALIGRLRAAYDQEIHGGSNPFGDGAVRFYLRDVRDFQSKARGVSYHKKRKRPNRNITTTSQSSS*