AlfalfaGEDB | Msa0739580

M. sativa cultivar zhongmu-4 / Msa0739580

KEGG: K15613
GO: -
PFAM: PF03790.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739580	XP_003616932.3	98.658	298	0	1	1	294	15	312	0.0	613

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739580	sp\|P46608\|HSBH1_SOYBN	66.284	261	72	7	45	293	123	379	1.46e-108	322

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739580	A5Y4H1	98.658	298	0	1	1	294	15	312	0.0	613

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TFs/TRs:

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Gene ID	Type	Classification
Msa0739580	TF	HB-KNOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002930	Msa0739580	0.800526	1.383001e-48	-8.615850e-47
Msa0006980	Msa0739580	0.876108	1.814690e-68	-8.615850e-47
Msa0015710	Msa0739580	0.860095	2.622411e-63	-8.615850e-47
Msa0016120	Msa0739580	0.839664	1.384345e-57	-8.615850e-47
Msa0019600	Msa0739580	0.862734	4.108883e-64	-8.615850e-47
Msa0050040	Msa0739580	0.819966	8.799333e-53	-8.615850e-47
Msa0055450	Msa0739580	0.863139	3.080881e-64	-8.615850e-47
Msa0074800	Msa0739580	0.802382	5.760447e-49	-8.615850e-47
Msa0080990	Msa0739580	0.841438	4.750487e-58	-8.615850e-47
Msa0102990	Msa0739580	0.818658	1.747861e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739580	MtrunA17_Chr5g0439391	98.658	298	0	1	1	294	1	298	0.0	613
Msa0739580	MtrunA17_Chr2g0289201	64.683	252	78	3	47	288	118	368	3.01e-105	311
Msa0739580	MtrunA17_Chr1g0151961	54.733	243	100	2	40	272	113	355	5.10e-76	236
Msa0739580	MtrunA17_Chr5g0413201	52.016	248	100	5	38	271	64	306	9.21e-76	234
Msa0739580	MtrunA17_Chr1g0192791	47.451	255	105	5	41	274	14	260	1.97e-69	216
Msa0739580	MtrunA17_Chr3g0137241	32.669	251	129	8	47	259	107	355	1.53e-34	128
Msa0739580	MtrunA17_Chr2g0305101	32.114	246	127	5	50	259	98	339	2.54e-34	128
Msa0739580	MtrunA17_Chr1g0149651	32.245	245	132	5	49	259	176	420	1.68e-33	127
Msa0739580	MtrunA17_Chr5g0398181	32.411	253	135	6	43	259	24	276	1.03e-32	122
Msa0739580	MtrunA17_Chr4g0065241	30.189	265	139	7	38	259	54	315	2.12e-31	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739580	AT1G62360.1	65.234	256	75	4	46	288	121	375	7.72e-104	308
Msa0739580	AT4G08150.1	56.962	237	89	3	49	272	137	373	3.77e-75	235
Msa0739580	AT1G23380.1	49.200	250	112	5	36	274	75	320	1.20e-72	226
Msa0739580	AT1G70510.1	48.594	249	111	4	38	274	61	304	4.14e-71	222
Msa0739580	AT1G23380.2	48.810	252	112	6	36	274	75	322	1.06e-70	222
Msa0739580	AT1G70510.2	47.826	253	111	5	38	274	61	308	7.54e-69	216
Msa0739580	AT1G62990.1	30.400	250	141	4	43	259	26	275	7.96e-35	127
Msa0739580	AT5G11060.1	34.800	250	128	9	43	259	120	367	1.90e-34	129
Msa0739580	AT5G25220.2	30.242	248	142	6	43	259	156	403	4.74e-34	128
Msa0739580	AT5G25220.1	30.242	248	142	6	43	259	156	403	6.92e-34	128

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Find 86 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATGGCTTCTTTGAA+GGG	0.505700	5_1:+57933482	None:intergenic
AAAGAATGGAAAGTTACCAA+AGG	0.641055	5_1:-57931192	Msa0739580:CDS
AAAGTATAATAATCTGTAAA+AGG	0.363764	5_1:+57934527	None:intergenic
AACAACCTAGATACTACTCA+AGG	0.648557	5_1:-57931299	Msa0739580:CDS
AACTACTTGATTGGTGGAGC+AGG	0.476464	5_1:-57931157	Msa0739580:CDS
AAGAATTGAGTCTCAGCTCA+AGG	0.557965	5_1:-57933453	Msa0739580:CDS
AAGCACTTGCAGAATCCACA+GGG	0.665978	5_1:-57930268	Msa0739580:CDS
AAGCTAGCCACCACTTCAGG+AGG	0.647427	5_1:+57933656	None:intergenic
AATGGCTCTTCAGGAAGGAC+AGG	0.539828	5_1:-57933602	Msa0739580:CDS
AATTCTTGAAAGGAAAAGCA+TGG	0.577216	5_1:+57933469	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCATAAACAGTAAAGTGTG+GGG	-	chr5_1:57930336-57930355	Msa0739580:intron	30.0%
TGATGAACATGGAAACTAAT+AGG	-	chr5_1:57930555-57930574	Msa0739580:intron	30.0%
AATTCTTGAAAGGAAAAGCA+TGG	+	chr5_1:57931245-57931264	None:intergenic	30.0%
TTGAACTAGGTTAAAAGGTT+TGG	-	chr5_1:57931685-57931704	Msa0739580:intron	30.0%
ATGATAGATTACTTCCTATG+GGG	-	chr5_1:57931710-57931729	Msa0739580:intron	30.0%
TGGGGAAATTAAGTAAAATG+AGG	-	chr5_1:57931728-57931747	Msa0739580:intron	30.0%
AAATCCATCAAGATTGCATT+GGG	+	chr5_1:57931990-57932009	None:intergenic	30.0%
AAAAATGCCTTCAAAACATC+CGG	+	chr5_1:57932013-57932032	None:intergenic	30.0%
ATGATATTCACACAAACACT+AGG	+	chr5_1:57932086-57932105	None:intergenic	30.0%
GAACCATGTAAATGAAGTTA+AGG	+	chr5_1:57932145-57932164	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	57929894	57934839	57929894	ID=Msa0739580;Name=Msa0739580
chr5_1	mRNA	57929894	57934839	57929894	ID=Msa0739580-mRNA-1;Parent=Msa0739580;Name=Msa0739580-mRNA-1;_AED=0.02;_eAED=0.02;_QI=514\|0.8\|0.66\|1\|0.6\|0.33\|6\|212\|294
chr5_1	exon	57929894	57930303	57929894	ID=Msa0739580-mRNA-1:exon:16500;Parent=Msa0739580-mRNA-1
chr5_1	exon	57931133	57931368	57931133	ID=Msa0739580-mRNA-1:exon:16499;Parent=Msa0739580-mRNA-1
chr5_1	exon	57933429	57933569	57933429	ID=Msa0739580-mRNA-1:exon:16498;Parent=Msa0739580-mRNA-1
chr5_1	exon	57933582	57933687	57933582	ID=Msa0739580-mRNA-1:exon:16497;Parent=Msa0739580-mRNA-1
chr5_1	exon	57933994	57934232	57933994	ID=Msa0739580-mRNA-1:exon:16496;Parent=Msa0739580-mRNA-1
chr5_1	exon	57934361	57934839	57934361	ID=Msa0739580-mRNA-1:exon:16495;Parent=Msa0739580-mRNA-1
chr5_1	five_prime_UTR	57934361	57934839	57934361	ID=Msa0739580-mRNA-1:five_prime_utr;Parent=Msa0739580-mRNA-1
chr5_1	five_prime_UTR	57934198	57934232	57934198	ID=Msa0739580-mRNA-1:five_prime_utr;Parent=Msa0739580-mRNA-1
chr5_1	CDS	57933994	57934197	57933994	ID=Msa0739580-mRNA-1:cds;Parent=Msa0739580-mRNA-1
chr5_1	CDS	57933582	57933687	57933582	ID=Msa0739580-mRNA-1:cds;Parent=Msa0739580-mRNA-1
chr5_1	CDS	57933429	57933569	57933429	ID=Msa0739580-mRNA-1:cds;Parent=Msa0739580-mRNA-1
chr5_1	CDS	57931133	57931368	57931133	ID=Msa0739580-mRNA-1:cds;Parent=Msa0739580-mRNA-1
chr5_1	CDS	57930106	57930303	57930106	ID=Msa0739580-mRNA-1:cds;Parent=Msa0739580-mRNA-1
chr5_1	three_prime_UTR	57929894	57930105	57929894	ID=Msa0739580-mRNA-1:three_prime_utr;Parent=Msa0739580-mRNA-1

Gene Sequence

>Msa0739580

ATGGATCATCAAAATCAAATGATGAACATGGAAACTAATAGGAAGTTTTTTTCATTTCCTCTGAGTAACAATTCTTCTGGTGTTCAAAATCATCATAACTACACTCAACACCAGAACAACACCAACAACAACACTTGTAGGGATAAAATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTGAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCAAAATGTGAAATATTGAATGGCTCTTCAGGAAGGACAGGAAGTAGTAGTTCTTGTATAGGTTTGGATCAGTTCATGGAGGCATATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCACTAAACCCTTCAAAGAAGCCATGCTTTTCCTTTCAAGAATTGAGTCTCAGCTCAAGGCTGTTGCTGTTTCAACTGACTTTGGTCAAAGTGAATTTGCAGCTTCACAGAATGAGATTGATGTGCATGAAAACAACCTAGATACTACTCAAGGTGAAGATCAGGAATTAAAAGTGCAGCTTCTACGCAAGTATAGTGGATATCTAGGAAGCCTTAAGAAAGAGTTTTTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTCGACAGCAACTACTTGATTGGTGGAGCAGGCATTACAAATGGCCTTACCCATCGGAATCCCAAAAGCAAGCACTTGCAGAATCCACAGGGCTAGATTTGAAGCAGATCAACAATTGGTTCATTAATCAGAGAAAACGCCACTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCCACAAATTACTACATGGAAAATGTGATGTGCAAGCCATTTCCTATGGATGCTATGCCTATGCTTCTTTAG

Protein sequence

>Msa0739580

MDHQNQMMNMETNRKFFSFPLSNNSSGVQNHHNYTQHQNNTNNNTCRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEILNGSSGRTGSSSSCIGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKAVAVSTDFGQSEFAASQNEIDVHENNLDTTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL*