Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558570 | XP_003608266.1 | 99.248 | 266 | 2 | 0 | 1 | 266 | 1 | 266 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558570 | sp|Q8VYN2|VAP42_ARATH | 64.865 | 296 | 73 | 5 | 1 | 266 | 1 | 295 | 3.86e-123 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558570 | Q2HTV7 | 99.248 | 266 | 2 | 0 | 1 | 266 | 1 | 266 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043740 | Msa0558570 | 0.822074 | 2.877334e-53 | -8.615850e-47 |
| Msa0075080 | Msa0558570 | -0.810131 | 1.342547e-50 | -8.615850e-47 |
| Msa0090090 | Msa0558570 | 0.826203 | 3.085210e-54 | -8.615850e-47 |
| Msa0122930 | Msa0558570 | -0.800921 | 1.148790e-48 | -8.615850e-47 |
| Msa0136270 | Msa0558570 | 0.828540 | 8.494191e-55 | -8.615850e-47 |
| Msa0137560 | Msa0558570 | 0.827586 | 1.441233e-54 | -8.615850e-47 |
| Msa0167570 | Msa0558570 | -0.803546 | 3.310561e-49 | -8.615850e-47 |
| Msa0558570 | Msa0696310 | 0.921241 | 4.603875e-88 | -8.615850e-47 |
| Msa0558570 | Msa0753590 | -0.823350 | 1.452405e-53 | -8.615850e-47 |
| Msa0558570 | Msa0810420 | 0.829972 | 3.816192e-55 | -8.615850e-47 |
| Msa0558570 | Msa1084890 | 0.819486 | 1.132473e-52 | -8.615850e-47 |
| Msa0558570 | Msa1379000 | 0.826938 | 2.060980e-54 | -8.615850e-47 |
| Msa0558570 | Msa1407900 | 0.806609 | 7.569643e-50 | -8.615850e-47 |
| Msa0558570 | Msa1417270 | 0.817799 | 2.733457e-52 | -8.615850e-47 |
| Msa0558570 | Msa1437450 | 0.813442 | 2.554808e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558570 | MtrunA17_Chr4g0048491 | 99.248 | 266 | 2 | 0 | 1 | 266 | 1 | 266 | 0.0 | 540 |
| Msa0558570 | MtrunA17_Chr2g0323731 | 69.373 | 271 | 78 | 3 | 1 | 266 | 1 | 271 | 1.47e-113 | 327 |
| Msa0558570 | MtrunA17_Chr2g0318581 | 72.273 | 220 | 57 | 3 | 50 | 266 | 25 | 243 | 5.56e-104 | 302 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558570 | AT4G21450.1 | 64.865 | 296 | 73 | 5 | 1 | 266 | 1 | 295 | 3.92e-124 | 355 |
| Msa0558570 | AT4G21450.3 | 60.635 | 315 | 74 | 6 | 1 | 266 | 1 | 314 | 1.70e-118 | 342 |
| Msa0558570 | AT4G05060.1 | 65.141 | 284 | 76 | 5 | 1 | 261 | 1 | 284 | 1.51e-109 | 318 |
| Msa0558570 | AT5G54110.1 | 64.940 | 251 | 80 | 4 | 16 | 262 | 16 | 262 | 3.00e-101 | 296 |
| Msa0558570 | AT4G21450.2 | 59.048 | 210 | 56 | 4 | 1 | 180 | 1 | 210 | 8.90e-71 | 217 |
| Msa0558570 | AT5G54110.2 | 61.538 | 169 | 57 | 4 | 16 | 180 | 16 | 180 | 9.72e-52 | 167 |
Find 75 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATCTAATGTAGCATTTA+AGG | 0.154803 | 4_1:-57468479 | Msa0558570:intron |
| AAATGCTACATTAGATTTAC+TGG | 0.228582 | 4_1:+57468483 | None:intergenic |
| CAGGTTTCTTCCGTGCTTCA+AGG | 0.310647 | 4_1:+57467393 | None:intergenic |
| TCAAGAGGAGTGTTACTGTT+AGG | 0.327375 | 4_1:+57470518 | None:intergenic |
| GATGCAGGGCCTAAAATTAT+TGG | 0.351535 | 4_1:-57467365 | Msa0558570:CDS |
| TTAGGTTCGGAGTGAGGTTT+GGG | 0.375172 | 4_1:+57470647 | None:intergenic |
| GGAAAGTAAAGTTTGTTAGA+AGG | 0.376948 | 4_1:+57470413 | None:intergenic |
| CTTAGGTTCGGAGTGAGGTT+TGG | 0.383229 | 4_1:+57470646 | None:intergenic |
| CAAGAGGAGTGTTACTGTTA+GGG | 0.393536 | 4_1:+57470519 | None:intergenic |
| TGTAGATGAGCCAGGAAAAC+AGG | 0.420800 | 4_1:-57468533 | Msa0558570:intron |
| ATTTAAAATCATGAGTTTGA+AGG | 0.426290 | 4_1:-57467893 | Msa0558570:CDS |
| TAAAGTTATCTAACCAGCTC+GGG | 0.427571 | 4_1:+57467847 | None:intergenic |
| TTGAAGAAATTCCAAACCTT+AGG | 0.429466 | 4_1:+57470629 | None:intergenic |
| TTAGGCCCTGCATCTTCTGC+AGG | 0.429473 | 4_1:+57467374 | None:intergenic |
| CTCACAGGACTTGGACGCTC+TGG | 0.438074 | 4_1:+57467675 | None:intergenic |
| AACAGTAACACTCCTCTTGA+AGG | 0.439501 | 4_1:-57470515 | Msa0558570:CDS |
| GAGAAGAGTTTCAAAATCAC+AGG | 0.445545 | 4_1:-57467103 | Msa0558570:three_prime_UTR |
| AGTTGTTTCATGCGTCCTCC+TGG | 0.445612 | 4_1:-57468117 | Msa0558570:CDS |
| GAAATTCCAAACCTTAGGTT+CGG | 0.448162 | 4_1:+57470634 | None:intergenic |
| AATGACATTTATCTACATAA+AGG | 0.449589 | 4_1:+57466996 | None:intergenic |
| CTCACTCCGAACCTAAGGTT+TGG | 0.454205 | 4_1:-57470640 | Msa0558570:CDS |
| GCTTGAGACGACGTCGTGTT+GGG | 0.464165 | 4_1:+57470441 | None:intergenic |
| ATGAGCCAGGAAAACAGGTT+AGG | 0.467951 | 4_1:-57468528 | Msa0558570:CDS |
| TTCTGTATAGAATGTTGGTC+TGG | 0.475986 | 4_1:-57467151 | Msa0558570:exon |
| AAGATACCTTGCTAAGCAGC+AGG | 0.483964 | 4_1:-57467190 | Msa0558570:CDS |
| AGAAGACGACGTCGTGTTGG+TGG | 0.485495 | 4_1:+57470577 | None:intergenic |
| AAGAAACCTGCAGAAGATGC+AGG | 0.486887 | 4_1:-57467380 | Msa0558570:CDS |
| GGCGAGAGTATCATAGCAAC+CGG | 0.491969 | 4_1:-57468078 | Msa0558570:intron |
| CTATTTGTATGTAGAGTAGT+TGG | 0.498560 | 4_1:-57466860 | Msa0558570:three_prime_UTR |
| AAGGGCTTGTCATTGATGAA+TGG | 0.501127 | 4_1:-57467340 | Msa0558570:CDS |
| TGAAAGACGAAAATGAAGGA+TGG | 0.501504 | 4_1:+57470711 | None:intergenic |
| GTAGATTCTGTATAGAATGT+TGG | 0.505509 | 4_1:-57467156 | Msa0558570:exon |
| CCGTCTTGTGTAGATGAGCC+AGG | 0.506060 | 4_1:-57468541 | Msa0558570:intron |
| AGCTTGAGACGACGTCGTGT+TGG | 0.512822 | 4_1:+57470440 | None:intergenic |
| GTGAGGTTTGGGTTCAGCTA+CGG | 0.514019 | 4_1:+57470658 | None:intergenic |
| TTTGGGTTCAGCTACGGCCA+TGG | 0.528458 | 4_1:+57470664 | None:intergenic |
| ATCATGAGTTTGAAGGTCAA+AGG | 0.531786 | 4_1:-57467886 | Msa0558570:CDS |
| GAAAGACGAAAATGAAGGAT+GGG | 0.534378 | 4_1:+57470712 | None:intergenic |
| CTGGATAAATTAATATATGT+TGG | 0.534473 | 4_1:-57467132 | Msa0558570:three_prime_UTR |
| AGGGCTTGTCATTGATGAAT+GGG | 0.534501 | 4_1:-57467339 | Msa0558570:intron |
| AATTGATTACGTCCCCGAGC+TGG | 0.536261 | 4_1:-57467860 | Msa0558570:intron |
| GGGCCTAAAATTATTGGTGA+AGG | 0.537596 | 4_1:-57467359 | Msa0558570:CDS |
| CAAACCTCACTCCGAACCTA+AGG | 0.538817 | 4_1:-57470645 | Msa0558570:CDS |
| AACAGGTTAGGAGTGCCATC+AGG | 0.542734 | 4_1:-57468516 | Msa0558570:CDS |
| AACAGAAGACGACGTCGTGT+TGG | 0.544962 | 4_1:+57470574 | None:intergenic |
| GAAGTGTTAGAATTGCGAAA+AGG | 0.547722 | 4_1:+57470602 | None:intergenic |
| ATAAAGTTATCTAACCAGCT+CGG | 0.548023 | 4_1:+57467846 | None:intergenic |
| CCAGGTGCAAGGATAGCTCC+AGG | 0.557167 | 4_1:+57468099 | None:intergenic |
| AAATTTGCTCAACTGCCACC+TGG | 0.560385 | 4_1:+57467718 | None:intergenic |
| CCTGGAGCTATCCTTGCACC+TGG | 0.563540 | 4_1:-57468099 | Msa0558570:CDS |
| AGGTTTCTTCCGTGCTTCAA+GGG | 0.567437 | 4_1:+57467394 | None:intergenic |
| TGATACTCTCGCCAGGTGCA+AGG | 0.572027 | 4_1:+57468088 | None:intergenic |
| GTTGCTATGATACTCTCGCC+AGG | 0.577145 | 4_1:+57468081 | None:intergenic |
| GGCCTAAAATTATTGGTGAA+GGG | 0.578667 | 4_1:-57467358 | Msa0558570:CDS |
| CATCGCCCTGCTGCTTAGCA+AGG | 0.579673 | 4_1:+57467184 | None:intergenic |
| CAAACCTTAGGTTCGGAGTG+AGG | 0.596942 | 4_1:+57470641 | None:intergenic |
| ATGATGAAAGACGAAAATGA+AGG | 0.598944 | 4_1:+57470707 | None:intergenic |
| CTGATGCTGCCCTTGAAGCA+CGG | 0.601872 | 4_1:-57467403 | Msa0558570:CDS |
| TGCTAAGCAGCAGGGCGATG+TGG | 0.604162 | 4_1:-57467181 | Msa0558570:CDS |
| AATGAAAAGCCAGAAAAGAG+TGG | 0.610602 | 4_1:-57467922 | Msa0558570:CDS |
| AGAAACCTGCAGAAGATGCA+GGG | 0.611107 | 4_1:-57467379 | Msa0558570:CDS |
| AAAATGAAGGATGGGAAACG+AGG | 0.611887 | 4_1:+57470720 | None:intergenic |
| CTCAAAACAGAGAGAAACCA+TGG | 0.611939 | 4_1:-57470681 | Msa0558570:exon |
| GTTTGATGAGCAGAAAGACC+AGG | 0.616359 | 4_1:-57467736 | Msa0558570:CDS |
| GTGAAAACTATGTGTGGGTG+TGG | 0.618633 | 4_1:-57467026 | Msa0558570:three_prime_UTR |
| TGAAAAGTGAAAACTATGTG+TGG | 0.620556 | 4_1:-57467032 | Msa0558570:three_prime_UTR |
| TGTGAAGTTGAACCTTCAAG+AGG | 0.629338 | 4_1:+57470503 | None:intergenic |
| AAAATTGTAAAAGAAAGTCA+AGG | 0.632808 | 4_1:-57470744 | Msa0558570:five_prime_UTR |
| AGATACCTTGCTAAGCAGCA+GGG | 0.656370 | 4_1:-57467189 | Msa0558570:CDS |
| GAAAAGTGAAAACTATGTGT+GGG | 0.667787 | 4_1:-57467031 | Msa0558570:three_prime_UTR |
| AAATGAAGGATGGGAAACGA+GGG | 0.679147 | 4_1:+57470721 | None:intergenic |
| AGAAGAGTTTCAAAATCACA+GGG | 0.682298 | 4_1:-57467102 | Msa0558570:three_prime_UTR |
| AAAGTTATCTAACCAGCTCG+GGG | 0.692212 | 4_1:+57467848 | None:intergenic |
| TGATGAGCAGAAAGACCAGG+TGG | 0.693468 | 4_1:-57467733 | Msa0558570:CDS |
| GGTGCAAGGATAGCTCCAGG+AGG | 0.793325 | 4_1:+57468102 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTCAATTTAATTAGA+GGG | - | chr4_1:57467366-57467385 | Msa0558570:CDS | 10.0% |
| !! | GTTTATTTCAATTTAATTAG+AGG | - | chr4_1:57467365-57467384 | Msa0558570:CDS | 15.0% |
| !!! | TATCTATAACTATAAACTTT+TGG | - | chr4_1:57467418-57467437 | Msa0558570:CDS | 15.0% |
| !!! | ATCTATAACTATAAACTTTT+GGG | - | chr4_1:57467419-57467438 | Msa0558570:CDS | 15.0% |
| !!! | AAGATCGTTTTATTATTTTT+TGG | + | chr4_1:57468206-57468225 | None:intergenic | 15.0% |
| !! | ATGTTACATGATAATAAATA+GGG | + | chr4_1:57469213-57469232 | None:intergenic | 15.0% |
| !! | AATGTTACATGATAATAAAT+AGG | + | chr4_1:57469214-57469233 | None:intergenic | 15.0% |
| !!! | TTATTTAGATTTGTTTTCTA+AGG | - | chr4_1:57469851-57469870 | Msa0558570:intron | 15.0% |
| !! | AATTGATTGTATATTACTTA+CGG | - | chr4_1:57470154-57470173 | Msa0558570:intron | 15.0% |
| !!! | ATTTTTCTTCATTAAGATTT+TGG | - | chr4_1:57470183-57470202 | Msa0558570:intron | 15.0% |
| !! | AAAATTGTAAAAGAAAGTCA+AGG | - | chr4_1:57466892-57466911 | Msa0558570:three_prime_UTR | 20.0% |
| !! | GTATGCAATTTAATTGTTAT+TGG | - | chr4_1:57467288-57467307 | Msa0558570:intron | 20.0% |
| !! | AAACCAGATAAAAAAGTTTA+GGG | + | chr4_1:57467606-57467625 | None:intergenic | 20.0% |
| !! | TAAACCAGATAAAAAAGTTT+AGG | + | chr4_1:57467607-57467626 | None:intergenic | 20.0% |
| !! | AAAATTTAGTTAGAGAACAA+TGG | - | chr4_1:57467915-57467934 | Msa0558570:CDS | 20.0% |
| !!! | TCCATATATGATTTTAGTTT+TGG | - | chr4_1:57467938-57467957 | Msa0558570:CDS | 20.0% |
| !!! | CCATATATGATTTTAGTTTT+GGG | - | chr4_1:57467939-57467958 | Msa0558570:CDS | 20.0% |
| !!! | AAACTGTAAATTTTGAAAGT+AGG | - | chr4_1:57468858-57468877 | Msa0558570:intron | 20.0% |
| !! | TAAATCTAATGTAGCATTTA+AGG | - | chr4_1:57469157-57469176 | Msa0558570:intron | 20.0% |
| !! | TGTTACATGATAATAAATAG+GGG | + | chr4_1:57469212-57469231 | None:intergenic | 20.0% |
| !! | ATATAAAGACGTATAAAGTA+GGG | + | chr4_1:57469275-57469294 | None:intergenic | 20.0% |
| !!! | TGTATTTATTATACTAGCTT+TGG | + | chr4_1:57469627-57469646 | None:intergenic | 20.0% |
| !! | AAGCTAGTATAATAAATACA+AGG | - | chr4_1:57469627-57469646 | Msa0558570:intron | 20.0% |
| !!! | ATTTAAAATCATGAGTTTGA+AGG | - | chr4_1:57469743-57469762 | Msa0558570:intron | 20.0% |
| !!! | TTCAGTGTACTTTTTTATTT+TGG | - | chr4_1:57469994-57470013 | Msa0558570:intron | 20.0% |
| !!! | TTTTATTTTGGCAATTTTTG+TGG | - | chr4_1:57470006-57470025 | Msa0558570:intron | 20.0% |
| !!! | AATTATCTGTTACTTTATTG+TGG | - | chr4_1:57470069-57470088 | Msa0558570:intron | 20.0% |
| !! | ATTGATTGTATATTACTTAC+GGG | - | chr4_1:57470155-57470174 | Msa0558570:intron | 20.0% |
| !! | CTGGATAAATTAATATATGT+TGG | - | chr4_1:57470504-57470523 | Msa0558570:CDS | 20.0% |
| !! | AATGACATTTATCTACATAA+AGG | + | chr4_1:57470643-57470662 | None:intergenic | 20.0% |
| !!! | ATAAATGTCATTATGTTTTC+AGG | - | chr4_1:57470651-57470670 | Msa0558570:CDS | 20.0% |
| !! | CAAATGCAGTAACATATTTT+TGG | + | chr4_1:57467544-57467563 | None:intergenic | 25.0% |
| ! | CAAAAATATGTTACTGCATT+TGG | - | chr4_1:57467542-57467561 | Msa0558570:intron | 25.0% |
| !!! | TTTCCCTAAACTTTTTTATC+TGG | - | chr4_1:57467600-57467619 | Msa0558570:intron | 25.0% |
| ! | AATACTTTGTGAAGTAGTAT+TGG | + | chr4_1:57467780-57467799 | None:intergenic | 25.0% |
| !! | GCTTTCAATTTTTCCATTTT+CGG | + | chr4_1:57467804-57467823 | None:intergenic | 25.0% |
| !! | TGATAATGTATGGAAATTGA+GGG | + | chr4_1:57467845-57467864 | None:intergenic | 25.0% |
| !!! | TTGATAATGTATGGAAATTG+AGG | + | chr4_1:57467846-57467865 | None:intergenic | 25.0% |
| ! | TTTCCATACATTATCAATCA+AGG | - | chr4_1:57467849-57467868 | Msa0558570:intron | 25.0% |
| ! | TTCCATACATTATCAATCAA+GGG | - | chr4_1:57467850-57467869 | Msa0558570:intron | 25.0% |
| ! | CCCAAAACTAAAATCATATA+TGG | + | chr4_1:57467942-57467961 | None:intergenic | 25.0% |
| !!! | TATTATTTTTTGGTTACCCA+TGG | + | chr4_1:57468196-57468215 | None:intergenic | 25.0% |
| !! | ATAAAACGATCTTTTCTCTT+TGG | - | chr4_1:57468213-57468232 | Msa0558570:intron | 25.0% |
| !! | TAAAACGATCTTTTCTCTTT+GGG | - | chr4_1:57468214-57468233 | Msa0558570:intron | 25.0% |
| ! | GTCACAGCTAATATAAATTA+GGG | - | chr4_1:57468462-57468481 | Msa0558570:intron | 25.0% |
| ! | ATTACTGTACACACAATTTA+TGG | - | chr4_1:57468568-57468587 | Msa0558570:intron | 25.0% |
| ! | ACTAAGCAGTTAAATTTGAA+TGG | - | chr4_1:57468696-57468715 | Msa0558570:intron | 25.0% |
| !!! | ACTAAGATACCAAGTTTTAA+TGG | - | chr4_1:57468827-57468846 | Msa0558570:intron | 25.0% |
| !! | CTAAAAGTACATACAACATT+AGG | + | chr4_1:57468941-57468960 | None:intergenic | 25.0% |
| !! | CTAATGTTGTATGTACTTTT+AGG | - | chr4_1:57468939-57468958 | Msa0558570:intron | 25.0% |
| !!! | TTTTAGGTCCATAAATACAT+AGG | - | chr4_1:57468955-57468974 | Msa0558570:intron | 25.0% |
| ! | AAATGCTACATTAGATTTAC+TGG | + | chr4_1:57469156-57469175 | None:intergenic | 25.0% |
| ! | GTTACATGATAATAAATAGG+GGG | + | chr4_1:57469211-57469230 | None:intergenic | 25.0% |
| ! | TATAAAGACGTATAAAGTAG+GGG | + | chr4_1:57469274-57469293 | None:intergenic | 25.0% |
| ! | CATATAAAGACGTATAAAGT+AGG | + | chr4_1:57469276-57469295 | None:intergenic | 25.0% |
| ! | TAGTAAAAGTAAGAATAGAC+AGG | + | chr4_1:57469357-57469376 | None:intergenic | 25.0% |
| !! | CCAACACTAATTTAGAATAT+AGG | + | chr4_1:57469436-57469455 | None:intergenic | 25.0% |
| ! | CCTATATTCTAAATTAGTGT+TGG | - | chr4_1:57469433-57469452 | Msa0558570:intron | 25.0% |
| !! | TTTCTCTACATATTCTTTTC+TGG | - | chr4_1:57469595-57469614 | Msa0558570:intron | 25.0% |
| !! | TTCTCTACATATTCTTTTCT+GGG | - | chr4_1:57469596-57469615 | Msa0558570:intron | 25.0% |
| !!! | CTGAAATTTTTTTTACTCAC+AGG | + | chr4_1:57469979-57469998 | None:intergenic | 25.0% |
| !!! | AGATTTTGGAAAAATTGAAG+CGG | - | chr4_1:57470197-57470216 | Msa0558570:intron | 25.0% |
| !! | CTTTCTGAAAAAACATAATC+AGG | + | chr4_1:57470416-57470435 | None:intergenic | 25.0% |
| !!! | TTATGTTTTTTCAGAAAGAG+AGG | - | chr4_1:57470418-57470437 | Msa0558570:CDS | 25.0% |
| !! | CTTTTTCTTGGAATATTTTC+AGG | - | chr4_1:57470558-57470577 | Msa0558570:CDS | 25.0% |
| ATGATGAAAGACGAAAATGA+AGG | + | chr4_1:57466932-57466951 | None:intergenic | 30.0% | |
| TTGAAGAAATTCCAAACCTT+AGG | + | chr4_1:57467010-57467029 | None:intergenic | 30.0% | |
| ! | TATGATGATGATGATGATGA+AGG | + | chr4_1:57467096-57467115 | None:intergenic | 30.0% |
| !! | GGAAAGTAAAGTTTGTTAGA+AGG | + | chr4_1:57467226-57467245 | None:intergenic | 30.0% |
| GAATTCTTGCCTGTTTAAAA+AGG | - | chr4_1:57467627-57467646 | Msa0558570:intron | 30.0% | |
| ! | TCAACCATTCCTTTTTAAAC+AGG | + | chr4_1:57467639-57467658 | None:intergenic | 30.0% |
| ! | TCACAAAGTATTTCCGAAAA+TGG | - | chr4_1:57467788-57467807 | Msa0558570:intron | 30.0% |
| AGATTAAAATCTAACGCCTA+AGG | + | chr4_1:57467885-57467904 | None:intergenic | 30.0% | |
| !!! | TATGATTTTAGTTTTGGGTC+AGG | - | chr4_1:57467944-57467963 | Msa0558570:CDS | 30.0% |
| CATATAGTACATTCATCACT+TGG | + | chr4_1:57467980-57467999 | None:intergenic | 30.0% | |
| ! | TTCTTTTTACCAACATAGTG+TGG | - | chr4_1:57468017-57468036 | Msa0558570:intron | 30.0% |
| ATCAGAGAAGACAACATTTA+AGG | - | chr4_1:57468259-57468278 | Msa0558570:intron | 30.0% | |
| ! | AACATTTAAGGTCAGTGTTA+AGG | - | chr4_1:57468271-57468290 | Msa0558570:intron | 30.0% |
| TATTCCTCGAATATTGAGTA+AGG | + | chr4_1:57468299-57468318 | None:intergenic | 30.0% | |
| TTACTCAATATTCGAGGAAT+AGG | - | chr4_1:57468298-57468317 | Msa0558570:intron | 30.0% | |
| TACTCAATATTCGAGGAATA+GGG | - | chr4_1:57468299-57468318 | Msa0558570:intron | 30.0% | |
| GGTCACAGCTAATATAAATT+AGG | - | chr4_1:57468461-57468480 | Msa0558570:intron | 30.0% | |
| CTAATATAAATTAGGGAGCA+AGG | - | chr4_1:57468469-57468488 | Msa0558570:intron | 30.0% | |
| TTGAAAGTAGGTCAAACAAA+TGG | - | chr4_1:57468870-57468889 | Msa0558570:intron | 30.0% | |
| TGAAAGTAGGTCAAACAAAT+GGG | - | chr4_1:57468871-57468890 | Msa0558570:intron | 30.0% | |
| TGAATCTGCCTATGTATTTA+TGG | + | chr4_1:57468966-57468985 | None:intergenic | 30.0% | |
| TAAATACATAGGCAGATTCA+TGG | - | chr4_1:57468966-57468985 | Msa0558570:intron | 30.0% | |
| GAACAAAATTGAGTAAGAGA+AGG | + | chr4_1:57469063-57469082 | None:intergenic | 30.0% | |
| TAAATAGGGGGTAAATAAAC+AGG | + | chr4_1:57469199-57469218 | None:intergenic | 30.0% | |
| AAGTAGGGGAATAAATAAAC+AGG | + | chr4_1:57469260-57469279 | None:intergenic | 30.0% | |
| !!! | TCTGGCTTTTCATTATTTTC+TGG | + | chr4_1:57469708-57469727 | None:intergenic | 30.0% |
| ATAAAGTTATCTAACCAGCT+CGG | + | chr4_1:57469793-57469812 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTACTCACAGGACT+TGG | + | chr4_1:57469973-57469992 | None:intergenic | 30.0% |
| ! | CAAATTGCAATACTCACTTT+TGG | - | chr4_1:57470358-57470377 | Msa0558570:intron | 30.0% |
| GTAGATTCTGTATAGAATGT+TGG | - | chr4_1:57470480-57470499 | Msa0558570:CDS | 30.0% | |
| AGAAGAGTTTCAAAATCACA+GGG | - | chr4_1:57470534-57470553 | Msa0558570:CDS | 30.0% | |
| !!! | TTGGAATATTTTCAGGTGAA+TGG | - | chr4_1:57470565-57470584 | Msa0558570:CDS | 30.0% |
| TGAAAAGTGAAAACTATGTG+TGG | - | chr4_1:57470604-57470623 | Msa0558570:CDS | 30.0% | |
| GAAAAGTGAAAACTATGTGT+GGG | - | chr4_1:57470605-57470624 | Msa0558570:CDS | 30.0% | |
| !! | CATTATGTTTTCAGGCTTTT+TGG | - | chr4_1:57470659-57470678 | Msa0558570:CDS | 30.0% |
| CTATTTGTATGTAGAGTAGT+TGG | - | chr4_1:57470776-57470795 | Msa0558570:five_prime_UTR | 30.0% | |
| GAAAGACGAAAATGAAGGAT+GGG | + | chr4_1:57466927-57466946 | None:intergenic | 35.0% | |
| TGAAAGACGAAAATGAAGGA+TGG | + | chr4_1:57466928-57466947 | None:intergenic | 35.0% | |
| GAAATTCCAAACCTTAGGTT+CGG | + | chr4_1:57467005-57467024 | None:intergenic | 35.0% | |
| ! | GAAGTGTTAGAATTGCGAAA+AGG | + | chr4_1:57467037-57467056 | None:intergenic | 35.0% |
| AAATGAGCAGCATACATACA+AGG | + | chr4_1:57467247-57467266 | None:intergenic | 35.0% | |
| !! | TTGGGTATGTTAACTTGTGT+CGG | - | chr4_1:57467437-57467456 | Msa0558570:CDS | 35.0% |
| CTTCTAAACTTGTGCCTTAA+GGG | - | chr4_1:57467565-57467584 | Msa0558570:intron | 35.0% | |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr4_1:57467582-57467601 | None:intergenic | 35.0% |
| CTTGCCTGTTTAAAAAGGAA+TGG | - | chr4_1:57467632-57467651 | Msa0558570:intron | 35.0% | |
| !! | TGGTTGACTTGTTTATGTTC+TGG | - | chr4_1:57467652-57467671 | Msa0558570:intron | 35.0% |
| !! | CGTACGAAAGATAACTTGTT+AGG | - | chr4_1:57468102-57468121 | Msa0558570:CDS | 35.0% |
| !! | GAAAGATAACTTGTTAGGAG+AGG | - | chr4_1:57468107-57468126 | Msa0558570:CDS | 35.0% |
| ATGTTGTCTTCTCTGATTGA+CGG | + | chr4_1:57468256-57468275 | None:intergenic | 35.0% | |
| ATTTATATTAGCTGTGACCG+AGG | + | chr4_1:57468460-57468479 | None:intergenic | 35.0% | |
| AGTAACTTCCATTGCTAACA+AGG | + | chr4_1:57468738-57468757 | None:intergenic | 35.0% | |
| TGTTAGCAATGGAAGTTACT+AGG | - | chr4_1:57468738-57468757 | Msa0558570:intron | 35.0% | |
| GTTAGCAATGGAAGTTACTA+GGG | - | chr4_1:57468739-57468758 | Msa0558570:intron | 35.0% | |
| GCATAAAATGACCAATCATG+AGG | + | chr4_1:57469038-57469057 | None:intergenic | 35.0% | |
| !! | ACTGGTGTTTTTAATCCTGA+TGG | + | chr4_1:57469138-57469157 | None:intergenic | 35.0% |
| !! | ATATGCAGTTTTTGTTGTCG+CGG | - | chr4_1:57469307-57469326 | Msa0558570:intron | 35.0% |
| ! | TTACTATGTCACTGTTTTGC+AGG | - | chr4_1:57469371-57469390 | Msa0558570:intron | 35.0% |
| AGAAATCGAATATTGCCTAC+CGG | + | chr4_1:57469580-57469599 | None:intergenic | 35.0% | |
| AATGAAAAGCCAGAAAAGAG+TGG | - | chr4_1:57469714-57469733 | Msa0558570:intron | 35.0% | |
| ! | AATTTGAGTCCACTCTTTTC+TGG | + | chr4_1:57469726-57469745 | None:intergenic | 35.0% |
| ATCATGAGTTTGAAGGTCAA+AGG | - | chr4_1:57469750-57469769 | Msa0558570:intron | 35.0% | |
| TAAAGTTATCTAACCAGCTC+GGG | + | chr4_1:57469792-57469811 | None:intergenic | 35.0% | |
| !!! | GGCAATTAATTTTTTCTGCC+TGG | - | chr4_1:57469872-57469891 | Msa0558570:intron | 35.0% |
| GGCCTAAAATTATTGGTGAA+GGG | - | chr4_1:57470278-57470297 | Msa0558570:intron | 35.0% | |
| ! | AGCCCTTCACCAATAATTTT+AGG | + | chr4_1:57470283-57470302 | None:intergenic | 35.0% |
| !!! | TGTTTTTTCAGAAAGAGAGG+AGG | - | chr4_1:57470421-57470440 | Msa0558570:CDS | 35.0% |
| !!! | GTTTTTTCAGAAAGAGAGGA+GGG | - | chr4_1:57470422-57470441 | Msa0558570:CDS | 35.0% |
| TTCTGTATAGAATGTTGGTC+TGG | - | chr4_1:57470485-57470504 | Msa0558570:CDS | 35.0% | |
| GAGAAGAGTTTCAAAATCAC+AGG | - | chr4_1:57470533-57470552 | Msa0558570:CDS | 35.0% | |
| ! | AAATCACAGGGTCTTTTTCT+TGG | - | chr4_1:57470546-57470565 | Msa0558570:CDS | 35.0% |
| !!! | TTTTCAGGCTTTTTGGTTTG+TGG | - | chr4_1:57470666-57470685 | Msa0558570:exon | 35.0% |
| ! | GATGTCAATCTGTTTTGCTA+TGG | - | chr4_1:57470751-57470770 | Msa0558570:five_prime_UTR | 35.0% |
| AAATGAAGGATGGGAAACGA+GGG | + | chr4_1:57466918-57466937 | None:intergenic | 40.0% | |
| AAAATGAAGGATGGGAAACG+AGG | + | chr4_1:57466919-57466938 | None:intergenic | 40.0% | |
| CTCAAAACAGAGAGAAACCA+TGG | - | chr4_1:57466955-57466974 | Msa0558570:three_prime_UTR | 40.0% | |
| !! | CAAGAGGAGTGTTACTGTTA+GGG | + | chr4_1:57467120-57467139 | None:intergenic | 40.0% |
| !! | TCAAGAGGAGTGTTACTGTT+AGG | + | chr4_1:57467121-57467140 | None:intergenic | 40.0% |
| AACAGTAACACTCCTCTTGA+AGG | - | chr4_1:57467121-57467140 | Msa0558570:three_prime_UTR | 40.0% | |
| TGTGAAGTTGAACCTTCAAG+AGG | + | chr4_1:57467136-57467155 | None:intergenic | 40.0% | |
| !! | TGGGTATGTTAACTTGTGTC+GGG | - | chr4_1:57467438-57467457 | Msa0558570:CDS | 40.0% |
| GCTTCTAAACTTGTGCCTTA+AGG | - | chr4_1:57467564-57467583 | Msa0558570:intron | 40.0% | |
| AGCTCAGTTCGTTAGATCAT+TGG | - | chr4_1:57467704-57467723 | Msa0558570:CDS | 40.0% | |
| !! | GGCCCTTGATTGATAATGTA+TGG | + | chr4_1:57467855-57467874 | None:intergenic | 40.0% |
| TCTAACGCCTAAGGACAAAA+AGG | + | chr4_1:57467876-57467895 | None:intergenic | 40.0% | |
| TGCTTAAGACACTCGGTTAT+CGG | + | chr4_1:57468052-57468071 | None:intergenic | 40.0% | |
| GACTACATGCTTAAGACACT+CGG | + | chr4_1:57468059-57468078 | None:intergenic | 40.0% | |
| GGAACCTTACTCAATATTCG+AGG | - | chr4_1:57468292-57468311 | Msa0558570:intron | 40.0% | |
| GACTAAAAAAGGGAAGGACT+TGG | + | chr4_1:57468344-57468363 | None:intergenic | 40.0% | |
| TCACGTGACTAAAAAAGGGA+AGG | + | chr4_1:57468350-57468369 | None:intergenic | 40.0% | |
| GCAGTCACGTGACTAAAAAA+GGG | + | chr4_1:57468354-57468373 | None:intergenic | 40.0% | |
| AGCAGTCACGTGACTAAAAA+AGG | + | chr4_1:57468355-57468374 | None:intergenic | 40.0% | |
| GTGAACGTGATGATCTTTAG+AGG | + | chr4_1:57468497-57468516 | None:intergenic | 40.0% | |
| CCACAACATATGCACACAAT+AGG | + | chr4_1:57468618-57468637 | None:intergenic | 40.0% | |
| CCTATTGTGTGCATATGTTG+TGG | - | chr4_1:57468615-57468634 | Msa0558570:intron | 40.0% | |
| ATTGTGTGCATATGTTGTGG+AGG | - | chr4_1:57468618-57468637 | Msa0558570:intron | 40.0% | |
| CAATACGCTAGAGACTAGAA+AGG | - | chr4_1:57468661-57468680 | Msa0558570:intron | 40.0% | |
| ATGCCTTACCTTGTTAGCAA+TGG | - | chr4_1:57468727-57468746 | Msa0558570:intron | 40.0% | |
| CTTCCATTGCTAACAAGGTA+AGG | + | chr4_1:57468733-57468752 | None:intergenic | 40.0% | |
| ! | GGACGCATGAAACAACTTTT+TGG | + | chr4_1:57469516-57469535 | None:intergenic | 40.0% |
| TGCTCTACAAACTTGAACAC+TGG | + | chr4_1:57469684-57469703 | None:intergenic | 40.0% | |
| AAAGTTATCTAACCAGCTCG+GGG | + | chr4_1:57469791-57469810 | None:intergenic | 40.0% | |
| GATGCAGGGCCTAAAATTAT+TGG | - | chr4_1:57470271-57470290 | Msa0558570:intron | 40.0% | |
| GGGCCTAAAATTATTGGTGA+AGG | - | chr4_1:57470277-57470296 | Msa0558570:intron | 40.0% | |
| AAGGGCTTGTCATTGATGAA+TGG | - | chr4_1:57470296-57470315 | Msa0558570:intron | 40.0% | |
| AGGGCTTGTCATTGATGAAT+GGG | - | chr4_1:57470297-57470316 | Msa0558570:intron | 40.0% | |
| TTAGGTTCGGAGTGAGGTTT+GGG | + | chr4_1:57466992-57467011 | None:intergenic | 45.0% | |
| ! | TCAAGGGCCTTTTTGTCCTT+AGG | - | chr4_1:57467866-57467885 | Msa0558570:CDS | 45.0% |
| CCAATTGTGCCACACTATGT+TGG | + | chr4_1:57468029-57468048 | None:intergenic | 45.0% | |
| CCAACATAGTGTGGCACAAT+TGG | - | chr4_1:57468026-57468045 | Msa0558570:intron | 45.0% | |
| GTAGTCATGTGTTCGATCCA+TGG | - | chr4_1:57468073-57468092 | Msa0558570:intron | 45.0% | |
| AGGTACGGAGATCCACTTAA+GGG | + | chr4_1:57468138-57468157 | None:intergenic | 45.0% | |
| GAGACTAATCCTTCGAGGTA+CGG | + | chr4_1:57468153-57468172 | None:intergenic | 45.0% | |
| !! | GTACCTCGAAGGATTAGTCT+CGG | - | chr4_1:57468152-57468171 | Msa0558570:intron | 45.0% |
| !! | TACCTCGAAGGATTAGTCTC+GGG | - | chr4_1:57468153-57468172 | Msa0558570:intron | 45.0% |
| !!! | AAGGATTAGTCTCGGGCTTT+TGG | - | chr4_1:57468160-57468179 | Msa0558570:intron | 45.0% |
| ACTTGGTCGCATCATGATGT+GGG | + | chr4_1:57468327-57468346 | None:intergenic | 45.0% | |
| TATATTAGCTGTGACCGAGG+AGG | + | chr4_1:57468457-57468476 | None:intergenic | 45.0% | |
| CATATGTTGTGGAGGTTGAG+AGG | - | chr4_1:57468626-57468645 | Msa0558570:intron | 45.0% | |
| !! | ACCAAGTTTTAATGGCTGCG+CGG | - | chr4_1:57468835-57468854 | Msa0558570:intron | 45.0% |
| CGAGTACTTCTCCTCATGAT+TGG | - | chr4_1:57469024-57469043 | Msa0558570:intron | 45.0% | |
| TGTAGATGAGCCAGGAAAAC+AGG | - | chr4_1:57469103-57469122 | Msa0558570:intron | 45.0% | |
| ATGAGCCAGGAAAACAGGTT+AGG | - | chr4_1:57469108-57469127 | Msa0558570:intron | 45.0% | |
| ! | AGAGTATCATAGCAACCGGT+AGG | - | chr4_1:57469562-57469581 | Msa0558570:intron | 45.0% |
| CTGCTCATCAAACTGTTTCC+AGG | + | chr4_1:57469893-57469912 | None:intergenic | 45.0% | |
| GTTTGATGAGCAGAAAGACC+AGG | - | chr4_1:57469900-57469919 | Msa0558570:intron | 45.0% | |
| ! | AAATTTGCTCAACTGCCACC+TGG | + | chr4_1:57469921-57469940 | None:intergenic | 45.0% |
| GGAAAAATTGAAGCGGCAGT+TGG | - | chr4_1:57470204-57470223 | Msa0558570:intron | 45.0% | |
| AGGTTTCTTCCGTGCTTCAA+GGG | + | chr4_1:57470245-57470264 | None:intergenic | 45.0% | |
| AAGAAACCTGCAGAAGATGC+AGG | - | chr4_1:57470256-57470275 | Msa0558570:intron | 45.0% | |
| AGAAACCTGCAGAAGATGCA+GGG | - | chr4_1:57470257-57470276 | Msa0558570:intron | 45.0% | |
| AAGATACCTTGCTAAGCAGC+AGG | - | chr4_1:57470446-57470465 | Msa0558570:CDS | 45.0% | |
| AGATACCTTGCTAAGCAGCA+GGG | - | chr4_1:57470447-57470466 | Msa0558570:CDS | 45.0% | |
| GTGAAAACTATGTGTGGGTG+TGG | - | chr4_1:57470610-57470629 | Msa0558570:CDS | 45.0% | |
| ! | GTGAGGTTTGGGTTCAGCTA+CGG | + | chr4_1:57466981-57467000 | None:intergenic | 50.0% |
| CTTAGGTTCGGAGTGAGGTT+TGG | + | chr4_1:57466993-57467012 | None:intergenic | 50.0% | |
| CAAACCTCACTCCGAACCTA+AGG | - | chr4_1:57466991-57467010 | Msa0558570:three_prime_UTR | 50.0% | |
| CAAACCTTAGGTTCGGAGTG+AGG | + | chr4_1:57466998-57467017 | None:intergenic | 50.0% | |
| CTCACTCCGAACCTAAGGTT+TGG | - | chr4_1:57466996-57467015 | Msa0558570:three_prime_UTR | 50.0% | |
| AACAGAAGACGACGTCGTGT+TGG | + | chr4_1:57467065-57467084 | None:intergenic | 50.0% | |
| GGTACGGAGATCCACTTAAG+GGG | + | chr4_1:57468137-57468156 | None:intergenic | 50.0% | |
| GAGGTACGGAGATCCACTTA+AGG | + | chr4_1:57468139-57468158 | None:intergenic | 50.0% | |
| !! | ATTAGTCTCGGGCTTTTGGC+CGG | - | chr4_1:57468164-57468183 | Msa0558570:intron | 50.0% |
| ! | TTTTGGCCGGAGGATACCAT+GGG | - | chr4_1:57468177-57468196 | Msa0558570:intron | 50.0% |
| TGGTTACCCATGGTATCCTC+CGG | + | chr4_1:57468186-57468205 | None:intergenic | 50.0% | |
| ! | GACTTGGTCGCATCATGATG+TGG | + | chr4_1:57468328-57468347 | None:intergenic | 50.0% |
| ! | AGTCACGTGACTGCTGATTG+AGG | - | chr4_1:57468360-57468379 | Msa0558570:intron | 50.0% |
| ! | GTCACGTGACTGCTGATTGA+GGG | - | chr4_1:57468361-57468380 | Msa0558570:intron | 50.0% |
| ! | TCACGTGACTGCTGATTGAG+GGG | - | chr4_1:57468362-57468381 | Msa0558570:intron | 50.0% |
| AAGTCATTCCGCTTCCTCCT+CGG | - | chr4_1:57468440-57468459 | Msa0558570:intron | 50.0% | |
| ACCCTTGCTAAGCACATCGT+TGG | - | chr4_1:57468535-57468554 | Msa0558570:intron | 50.0% | |
| GCCAACGATGTGCTTAGCAA+GGG | + | chr4_1:57468539-57468558 | None:intergenic | 50.0% | |
| TGCCAACGATGTGCTTAGCA+AGG | + | chr4_1:57468540-57468559 | None:intergenic | 50.0% | |
| TGCTAAGCACATCGTTGGCA+TGG | - | chr4_1:57468540-57468559 | Msa0558570:intron | 50.0% | |
| TCCGCGCAGCCATTAAAACT+TGG | + | chr4_1:57468839-57468858 | None:intergenic | 50.0% | |
| CACAAGACGGAGAGGAAAGA+AGG | + | chr4_1:57469085-57469104 | None:intergenic | 50.0% | |
| CTCATCTACACAAGACGGAG+AGG | + | chr4_1:57469093-57469112 | None:intergenic | 50.0% | |
| CCTGGCTCATCTACACAAGA+CGG | + | chr4_1:57469098-57469117 | None:intergenic | 50.0% | |
| ! | GCACTCCTAACCTGTTTTCC+TGG | + | chr4_1:57469116-57469135 | None:intergenic | 50.0% |
| !! | AACAGGTTAGGAGTGCCATC+AGG | - | chr4_1:57469120-57469139 | Msa0558570:intron | 50.0% |
| ! | AGTTGTTTCATGCGTCCTCC+TGG | - | chr4_1:57469519-57469538 | Msa0558570:intron | 50.0% |
| GTTGCTATGATACTCTCGCC+AGG | + | chr4_1:57469558-57469577 | None:intergenic | 50.0% | |
| !! | GGCGAGAGTATCATAGCAAC+CGG | - | chr4_1:57469558-57469577 | Msa0558570:intron | 50.0% |
| AATTGATTACGTCCCCGAGC+TGG | - | chr4_1:57469776-57469795 | Msa0558570:intron | 50.0% | |
| TGATGAGCAGAAAGACCAGG+TGG | - | chr4_1:57469903-57469922 | Msa0558570:intron | 50.0% | |
| CAGGTTTCTTCCGTGCTTCA+AGG | + | chr4_1:57470246-57470265 | None:intergenic | 50.0% | |
| ! | TTTGGGTTCAGCTACGGCCA+TGG | + | chr4_1:57466975-57466994 | None:intergenic | 55.0% |
| AGAAGACGACGTCGTGTTGG+TGG | + | chr4_1:57467062-57467081 | None:intergenic | 55.0% | |
| GCTTGAGACGACGTCGTGTT+GGG | + | chr4_1:57467198-57467217 | None:intergenic | 55.0% | |
| AGCTTGAGACGACGTCGTGT+TGG | + | chr4_1:57467199-57467218 | None:intergenic | 55.0% | |
| CGAACTGAGCTAAGCTCACG+TGG | + | chr4_1:57467695-57467714 | None:intergenic | 55.0% | |
| TCTTTCGTACGCAGCAGCCA+TGG | + | chr4_1:57468093-57468112 | None:intergenic | 55.0% | |
| GGAGAGGTCATCCCCTTAAG+TGG | - | chr4_1:57468123-57468142 | Msa0558570:CDS | 55.0% | |
| AGTGGATCTCCGTACCTCGA+AGG | - | chr4_1:57468141-57468160 | Msa0558570:CDS | 55.0% | |
| AGCCCGAGACTAATCCTTCG+AGG | + | chr4_1:57468158-57468177 | None:intergenic | 55.0% | |
| ! | CTTTTGGCCGGAGGATACCA+TGG | - | chr4_1:57468176-57468195 | Msa0558570:intron | 55.0% |
| ! | ACTGCTGATTGAGGGGAGGT+TGG | - | chr4_1:57468369-57468388 | Msa0558570:intron | 55.0% |
| GAGCTGGCAATGCACGTTGA+GGG | - | chr4_1:57468408-57468427 | Msa0558570:intron | 55.0% | |
| TGGCAATGCACGTTGAGGGA+CGG | - | chr4_1:57468412-57468431 | Msa0558570:intron | 55.0% | |
| CCGTCTTGTGTAGATGAGCC+AGG | - | chr4_1:57469095-57469114 | Msa0558570:intron | 55.0% | |
| TGATACTCTCGCCAGGTGCA+AGG | + | chr4_1:57469551-57469570 | None:intergenic | 55.0% | |
| CTGATGCTGCCCTTGAAGCA+CGG | - | chr4_1:57470233-57470252 | Msa0558570:intron | 55.0% | |
| TTAGGCCCTGCATCTTCTGC+AGG | + | chr4_1:57470265-57470284 | None:intergenic | 55.0% | |
| ! | CGTGACTGCTGATTGAGGGG+AGG | - | chr4_1:57468365-57468384 | Msa0558570:intron | 60.0% |
| AGGGGAGGTTGGCGAGAAGA+AGG | - | chr4_1:57468380-57468399 | Msa0558570:intron | 60.0% | |
| GGGGAGGTTGGCGAGAAGAA+GGG | - | chr4_1:57468381-57468400 | Msa0558570:intron | 60.0% | |
| GGGAGGTTGGCGAGAAGAAG+GGG | - | chr4_1:57468382-57468401 | Msa0558570:intron | 60.0% | |
| GGAGGTTGGCGAGAAGAAGG+GGG | - | chr4_1:57468383-57468402 | Msa0558570:intron | 60.0% | |
| GAGGTTGGCGAGAAGAAGGG+GGG | - | chr4_1:57468384-57468403 | Msa0558570:intron | 60.0% | |
| AGGTTGGCGAGAAGAAGGGG+GGG | - | chr4_1:57468385-57468404 | Msa0558570:intron | 60.0% | |
| GGAGCTGGCAATGCACGTTG+AGG | - | chr4_1:57468407-57468426 | Msa0558570:intron | 60.0% | |
| AGCTGTGACCGAGGAGGAAG+CGG | + | chr4_1:57468451-57468470 | None:intergenic | 60.0% | |
| GGTGCAAGGATAGCTCCAGG+AGG | + | chr4_1:57469537-57469556 | None:intergenic | 60.0% | |
| CCAGGTGCAAGGATAGCTCC+AGG | + | chr4_1:57469540-57469559 | None:intergenic | 60.0% | |
| CCTGGAGCTATCCTTGCACC+TGG | - | chr4_1:57469537-57469556 | Msa0558570:intron | 60.0% | |
| CTCACAGGACTTGGACGCTC+TGG | + | chr4_1:57469964-57469983 | None:intergenic | 60.0% | |
| ! | CATCGCCCTGCTGCTTAGCA+AGG | + | chr4_1:57470455-57470474 | None:intergenic | 60.0% |
| TGCTAAGCAGCAGGGCGATG+TGG | - | chr4_1:57470455-57470474 | Msa0558570:CDS | 60.0% | |
| ! | AGTCTCGGGCTTTTGGCCGG+AGG | - | chr4_1:57468167-57468186 | Msa0558570:intron | 65.0% |
| GGTTGGCGAGAAGAAGGGGG+GGG | - | chr4_1:57468386-57468405 | Msa0558570:intron | 65.0% | |
| CGAGAAGAAGGGGGGGGAGC+TGG | - | chr4_1:57468392-57468411 | Msa0558570:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 57466855 | 57470803 | 57466855 | ID=Msa0558570;Name=Msa0558570 |
| chr4_1 | mRNA | 57466855 | 57470803 | 57466855 | ID=Msa0558570-mRNA-1;Parent=Msa0558570;Name=Msa0558570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=119|1|1|1|1|1|7|309|266 |
| chr4_1 | exon | 57466855 | 57467226 | 57466855 | ID=Msa0558570-mRNA-1:exon:17396;Parent=Msa0558570-mRNA-1 |
| chr4_1 | exon | 57467340 | 57467459 | 57467340 | ID=Msa0558570-mRNA-1:exon:17395;Parent=Msa0558570-mRNA-1 |
| chr4_1 | exon | 57467680 | 57467757 | 57467680 | ID=Msa0558570-mRNA-1:exon:17394;Parent=Msa0558570-mRNA-1 |
| chr4_1 | exon | 57467861 | 57467973 | 57467861 | ID=Msa0558570-mRNA-1:exon:17393;Parent=Msa0558570-mRNA-1 |
| chr4_1 | exon | 57468079 | 57468160 | 57468079 | ID=Msa0558570-mRNA-1:exon:17392;Parent=Msa0558570-mRNA-1 |
| chr4_1 | exon | 57468480 | 57468550 | 57468480 | ID=Msa0558570-mRNA-1:exon:17391;Parent=Msa0558570-mRNA-1 |
| chr4_1 | exon | 57470411 | 57470803 | 57470411 | ID=Msa0558570-mRNA-1:exon:17390;Parent=Msa0558570-mRNA-1 |
| chr4_1 | five_prime_UTR | 57470685 | 57470803 | 57470685 | ID=Msa0558570-mRNA-1:five_prime_utr;Parent=Msa0558570-mRNA-1 |
| chr4_1 | CDS | 57470411 | 57470684 | 57470411 | ID=Msa0558570-mRNA-1:cds;Parent=Msa0558570-mRNA-1 |
| chr4_1 | CDS | 57468480 | 57468550 | 57468480 | ID=Msa0558570-mRNA-1:cds;Parent=Msa0558570-mRNA-1 |
| chr4_1 | CDS | 57468079 | 57468160 | 57468079 | ID=Msa0558570-mRNA-1:cds;Parent=Msa0558570-mRNA-1 |
| chr4_1 | CDS | 57467861 | 57467973 | 57467861 | ID=Msa0558570-mRNA-1:cds;Parent=Msa0558570-mRNA-1 |
| chr4_1 | CDS | 57467680 | 57467757 | 57467680 | ID=Msa0558570-mRNA-1:cds;Parent=Msa0558570-mRNA-1 |
| chr4_1 | CDS | 57467340 | 57467459 | 57467340 | ID=Msa0558570-mRNA-1:cds;Parent=Msa0558570-mRNA-1 |
| chr4_1 | CDS | 57467164 | 57467226 | 57467164 | ID=Msa0558570-mRNA-1:cds;Parent=Msa0558570-mRNA-1 |
| chr4_1 | three_prime_UTR | 57466855 | 57467163 | 57466855 | ID=Msa0558570-mRNA-1:three_prime_utr;Parent=Msa0558570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
