Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182560 | XP_039685961.1 | 92.708 | 384 | 14 | 3 | 1 | 374 | 1 | 380 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182560 | sp|Q9C942|CSE_ARATH | 34.828 | 290 | 181 | 3 | 92 | 374 | 38 | 326 | 2.59e-53 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182560 | A0A396K0S6 | 92.708 | 384 | 14 | 3 | 1 | 374 | 1 | 380 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043740 | Msa0182560 | 0.964519 | 1.983613e-123 | -8.615850e-47 |
| Msa0051960 | Msa0182560 | 0.809338 | 1.987849e-50 | -8.615850e-47 |
| Msa0090090 | Msa0182560 | 0.974079 | 1.580083e-137 | -8.615850e-47 |
| Msa0094710 | Msa0182560 | 0.824051 | 9.953968e-54 | -8.615850e-47 |
| Msa0101960 | Msa0182560 | 0.806729 | 7.140464e-50 | -8.615850e-47 |
| Msa0136270 | Msa0182560 | 0.806050 | 9.930249e-50 | -8.615850e-47 |
| Msa0137560 | Msa0182560 | 0.971701 | 1.400768e-133 | -8.615850e-47 |
| Msa0139680 | Msa0182560 | 0.834923 | 2.263321e-56 | -8.615850e-47 |
| Msa0170770 | Msa0182560 | 0.830753 | 2.458943e-55 | -8.615850e-47 |
| Msa0182560 | Msa0185100 | 0.806966 | 6.364500e-50 | -8.615850e-47 |
| Msa0182560 | Msa0189600 | 0.818831 | 1.596573e-52 | -8.615850e-47 |
| Msa0182560 | Msa0193190 | 0.819835 | 9.428300e-53 | -8.615850e-47 |
| Msa0182560 | Msa0244890 | 0.801806 | 7.568219e-49 | -8.615850e-47 |
| Msa0182560 | Msa0257900 | 0.803122 | 4.052691e-49 | -8.615850e-47 |
| Msa0182560 | Msa0257910 | 0.805933 | 1.050724e-49 | -8.615850e-47 |
| Msa0182560 | Msa0271540 | 0.810282 | 1.245537e-50 | -8.615850e-47 |
| Msa0182560 | Msa0273070 | 0.810047 | 1.399549e-50 | -8.615850e-47 |
| Msa0182560 | Msa0296900 | 0.814540 | 1.462607e-51 | -8.615850e-47 |
| Msa0182560 | Msa0296910 | 0.826570 | 2.523702e-54 | -8.615850e-47 |
| Msa0182560 | Msa0307420 | 0.802199 | 6.283498e-49 | -8.615850e-47 |
| Msa0182560 | Msa0319270 | 0.818494 | 1.903310e-52 | -8.615850e-47 |
| Msa0182560 | Msa0335070 | 0.836000 | 1.209095e-56 | -8.615850e-47 |
| Msa0182560 | Msa0335080 | 0.838266 | 3.184364e-57 | -8.615850e-47 |
| Msa0182560 | Msa0387040 | 0.838178 | 3.355738e-57 | -8.615850e-47 |
| Msa0182560 | Msa0408340 | 0.815879 | 7.371475e-52 | -8.615850e-47 |
| Msa0182560 | Msa0415640 | 0.818602 | 1.799231e-52 | -8.615850e-47 |
| Msa0182560 | Msa0480930 | 0.812802 | 3.530041e-51 | -8.615850e-47 |
| Msa0182560 | Msa0501410 | 0.826157 | 3.164849e-54 | -8.615850e-47 |
| Msa0182560 | Msa0517270 | 0.817686 | 2.899005e-52 | -8.615850e-47 |
| Msa0182560 | Msa0534270 | 0.808066 | 3.717565e-50 | -8.615850e-47 |
| Msa0182560 | Msa0536540 | 0.812155 | 4.887882e-51 | -8.615850e-47 |
| Msa0182560 | Msa0577660 | 0.801447 | 8.966310e-49 | -8.615850e-47 |
| Msa0182560 | Msa0588710 | 0.804427 | 2.171967e-49 | -8.615850e-47 |
| Msa0182560 | Msa0592650 | 0.810424 | 1.160750e-50 | -8.615850e-47 |
| Msa0182560 | Msa0592660 | 0.824685 | 7.059681e-54 | -8.615850e-47 |
| Msa0182560 | Msa0619310 | 0.821011 | 5.065948e-53 | -8.615850e-47 |
| Msa0182560 | Msa0662460 | 0.812662 | 3.787151e-51 | -8.615850e-47 |
| Msa0182560 | Msa0697590 | 0.800729 | 1.257260e-48 | -8.615850e-47 |
| Msa0182560 | Msa0704680 | 0.801787 | 7.635919e-49 | -8.615850e-47 |
| Msa0182560 | Msa0709140 | 0.831341 | 1.763782e-55 | -8.615850e-47 |
| Msa0182560 | Msa0740630 | 0.805079 | 1.587051e-49 | -8.615850e-47 |
| Msa0182560 | Msa0742430 | 0.830199 | 3.358932e-55 | -8.615850e-47 |
| Msa0182560 | Msa0758850 | 0.851446 | 8.828400e-61 | -8.615850e-47 |
| Msa0182560 | Msa0790920 | 0.818691 | 1.717890e-52 | -8.615850e-47 |
| Msa0182560 | Msa0820880 | 0.805334 | 1.403584e-49 | -8.615850e-47 |
| Msa0182560 | Msa0838090 | 0.847988 | 8.159192e-60 | -8.615850e-47 |
| Msa0182560 | Msa0859040 | 0.816911 | 4.332147e-52 | -8.615850e-47 |
| Msa0182560 | Msa0862620 | 0.816734 | 4.745763e-52 | -8.615850e-47 |
| Msa0182560 | Msa1011250 | 0.823194 | 1.579372e-53 | -8.615850e-47 |
| Msa0182560 | Msa1027910 | 0.803423 | 3.511485e-49 | -8.615850e-47 |
| Msa0182560 | Msa1030240 | 0.805714 | 1.168252e-49 | -8.615850e-47 |
| Msa0182560 | Msa1043120 | 0.815099 | 1.099376e-51 | -8.615850e-47 |
| Msa0182560 | Msa1084890 | 0.809914 | 1.495103e-50 | -8.615850e-47 |
| Msa0182560 | Msa1089190 | 0.818809 | 1.614773e-52 | -8.615850e-47 |
| Msa0182560 | Msa1116840 | 0.809680 | 1.678815e-50 | -8.615850e-47 |
| Msa0182560 | Msa1131790 | 0.801083 | 1.064151e-48 | -8.615850e-47 |
| Msa0182560 | Msa1136760 | 0.826150 | 3.176025e-54 | -8.615850e-47 |
| Msa0182560 | Msa1208990 | 0.818634 | 1.769532e-52 | -8.615850e-47 |
| Msa0182560 | Msa1256060 | 0.817839 | 2.677978e-52 | -8.615850e-47 |
| Msa0182560 | Msa1296240 | 0.807998 | 3.844122e-50 | -8.615850e-47 |
| Msa0182560 | Msa1307530 | 0.830644 | 2.615580e-55 | -8.615850e-47 |
| Msa0182560 | Msa1364080 | 0.806633 | 7.482387e-50 | -8.615850e-47 |
| Msa0182560 | Msa1398140 | 0.813851 | 2.076645e-51 | -8.615850e-47 |
| Msa0182560 | Msa1447870 | 0.822527 | 2.258520e-53 | -8.615850e-47 |
| Msa0182560 | Msa1447880 | 0.828073 | 1.100902e-54 | -8.615850e-47 |
| Msa0182560 | Msa1451990 | 0.810004 | 1.429895e-50 | -8.615850e-47 |
| Msa0182560 | Msa1455200 | 0.801907 | 7.215048e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182560 | MtrunA17_Chr1g0209741 | 92.708 | 384 | 14 | 3 | 1 | 374 | 1 | 380 | 0.0 | 723 |
| Msa0182560 | MtrunA17_Chr5g0423541 | 66.582 | 395 | 108 | 5 | 1 | 373 | 1 | 393 | 0.0 | 548 |
| Msa0182560 | MtrunA17_Chr7g0215451 | 57.704 | 331 | 129 | 2 | 49 | 369 | 7 | 336 | 1.90e-139 | 400 |
| Msa0182560 | MtrunA17_Chr6g0457581 | 55.891 | 331 | 135 | 2 | 49 | 369 | 6 | 335 | 2.34e-137 | 395 |
| Msa0182560 | MtrunA17_Chr6g0460121 | 60.140 | 286 | 113 | 1 | 84 | 369 | 14 | 298 | 1.95e-128 | 371 |
| Msa0182560 | MtrunA17_Chr6g0484431 | 52.000 | 275 | 120 | 3 | 47 | 310 | 8 | 281 | 2.33e-102 | 303 |
| Msa0182560 | MtrunA17_Chr1g0195501 | 45.745 | 282 | 152 | 1 | 90 | 371 | 11 | 291 | 1.81e-87 | 267 |
| Msa0182560 | MtrunA17_Chr7g0269371 | 43.571 | 280 | 156 | 1 | 90 | 369 | 11 | 288 | 6.11e-86 | 264 |
| Msa0182560 | MtrunA17_Chr1g0212901 | 43.571 | 280 | 157 | 1 | 93 | 372 | 16 | 294 | 6.23e-83 | 255 |
| Msa0182560 | MtrunA17_Chr4g0047891 | 40.288 | 278 | 166 | 0 | 95 | 372 | 47 | 324 | 1.08e-71 | 226 |
| Msa0182560 | MtrunA17_Chr1g0199771 | 33.770 | 305 | 189 | 5 | 66 | 368 | 19 | 312 | 6.33e-56 | 186 |
| Msa0182560 | MtrunA17_Chr4g0071671 | 37.050 | 278 | 173 | 2 | 98 | 374 | 41 | 317 | 2.46e-55 | 184 |
| Msa0182560 | MtrunA17_Chr3g0140391 | 36.071 | 280 | 165 | 8 | 95 | 371 | 103 | 371 | 1.14e-44 | 158 |
| Msa0182560 | MtrunA17_Chr6g0479331 | 35.915 | 284 | 172 | 8 | 89 | 371 | 116 | 390 | 6.80e-38 | 140 |
| Msa0182560 | MtrunA17_Chr1g0209761 | 83.099 | 71 | 12 | 0 | 304 | 374 | 12 | 82 | 1.42e-33 | 119 |
| Msa0182560 | MtrunA17_Chr6g0484421 | 53.968 | 63 | 29 | 0 | 311 | 373 | 1 | 63 | 1.39e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182560 | AT1G77420.1 | 63.265 | 343 | 116 | 1 | 39 | 371 | 36 | 378 | 1.37e-160 | 456 |
| Msa0182560 | AT5G16120.3 | 56.839 | 329 | 131 | 2 | 51 | 369 | 10 | 337 | 1.39e-135 | 391 |
| Msa0182560 | AT5G16120.1 | 56.839 | 329 | 131 | 2 | 51 | 369 | 10 | 337 | 1.39e-135 | 391 |
| Msa0182560 | AT5G16120.2 | 56.839 | 329 | 131 | 2 | 51 | 369 | 28 | 355 | 4.25e-135 | 390 |
| Msa0182560 | AT5G16120.4 | 56.839 | 329 | 131 | 2 | 51 | 369 | 42 | 369 | 4.47e-135 | 391 |
| Msa0182560 | AT3G62860.1 | 41.489 | 282 | 163 | 1 | 90 | 371 | 12 | 291 | 1.60e-83 | 258 |
| Msa0182560 | AT2G39420.1 | 44.326 | 282 | 156 | 1 | 92 | 373 | 16 | 296 | 3.58e-83 | 256 |
| Msa0182560 | AT2G47630.1 | 42.908 | 282 | 161 | 0 | 90 | 371 | 12 | 293 | 4.07e-83 | 257 |
| Msa0182560 | AT2G39410.2 | 45.714 | 280 | 151 | 1 | 92 | 371 | 16 | 294 | 7.63e-83 | 255 |
| Msa0182560 | AT1G11090.1 | 44.245 | 278 | 155 | 0 | 95 | 372 | 38 | 315 | 1.26e-79 | 247 |
| Msa0182560 | AT3G55180.1 | 43.310 | 284 | 161 | 0 | 90 | 373 | 8 | 291 | 1.10e-78 | 244 |
| Msa0182560 | AT2G39400.1 | 42.349 | 281 | 161 | 1 | 93 | 373 | 11 | 290 | 8.12e-76 | 237 |
| Msa0182560 | AT3G62860.2 | 41.870 | 246 | 143 | 0 | 126 | 371 | 3 | 248 | 1.53e-72 | 228 |
| Msa0182560 | AT2G47630.2 | 43.460 | 237 | 134 | 0 | 137 | 373 | 14 | 250 | 7.96e-69 | 219 |
| Msa0182560 | AT2G47630.3 | 43.460 | 237 | 134 | 0 | 137 | 373 | 34 | 270 | 1.65e-68 | 219 |
| Msa0182560 | AT3G55190.1 | 38.516 | 283 | 172 | 2 | 92 | 373 | 16 | 297 | 1.01e-65 | 211 |
| Msa0182560 | AT5G14980.1 | 34.982 | 283 | 181 | 3 | 90 | 371 | 35 | 315 | 4.29e-59 | 194 |
| Msa0182560 | AT5G19290.1 | 34.982 | 283 | 182 | 2 | 93 | 374 | 38 | 319 | 2.97e-56 | 187 |
| Msa0182560 | AT1G52760.1 | 34.828 | 290 | 181 | 3 | 92 | 374 | 38 | 326 | 2.63e-54 | 182 |
| Msa0182560 | AT2G39400.2 | 40.094 | 212 | 126 | 1 | 93 | 304 | 11 | 221 | 6.02e-50 | 168 |
| Msa0182560 | AT5G11650.1 | 36.691 | 278 | 160 | 8 | 95 | 368 | 110 | 375 | 2.99e-42 | 152 |
| Msa0182560 | AT1G73480.1 | 34.122 | 296 | 171 | 10 | 83 | 372 | 186 | 463 | 6.63e-40 | 147 |
| Msa0182560 | AT1G18360.1 | 34.520 | 281 | 171 | 6 | 95 | 372 | 112 | 382 | 1.47e-38 | 142 |
| Msa0182560 | AT5G11650.2 | 34.171 | 199 | 114 | 7 | 95 | 287 | 110 | 297 | 2.22e-21 | 93.6 |
| Msa0182560 | AT2G39410.1 | 43.182 | 88 | 49 | 1 | 92 | 179 | 16 | 102 | 3.35e-20 | 85.9 |
Find 94 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCATTATTGATACTTCA+TGG | 0.274482 | 1_4:+71169004 | Msa0182560:CDS |
| TATTCTTCTTTGGCTCATCT+TGG | 0.291232 | 1_4:-71169307 | None:intergenic |
| AGGAGGTTACCATGGCATTT+TGG | 0.302834 | 1_4:+71169114 | Msa0182560:CDS |
| AACTTGTAGTAGTAGGAAAT+TGG | 0.315204 | 1_4:+71169505 | Msa0182560:three_prime_UTR |
| TTGCATTCACTCTCAGTCTC+AGG | 0.316151 | 1_4:-71166565 | None:intergenic |
| ACTTGCACTTTCTTCTTTGA+AGG | 0.335129 | 1_4:+71167405 | Msa0182560:CDS |
| TTGATTGGAACGCCATGTTC+TGG | 0.338027 | 1_4:-71167348 | None:intergenic |
| ACCATGAGATGATGTCATTA+TGG | 0.339733 | 1_4:-71169168 | None:intergenic |
| GCAATGGATTTCCCAGGTTT+CGG | 0.351323 | 1_4:+71167539 | Msa0182560:CDS |
| GCTCCATGAAGTATCAATAA+TGG | 0.356305 | 1_4:-71169007 | None:intergenic |
| ATTTATATTCGGACAGTCAA+TGG | 0.361185 | 1_4:+71168052 | Msa0182560:CDS |
| TTAGTTTAACTTGTAGTAGT+AGG | 0.364902 | 1_4:+71169498 | Msa0182560:three_prime_UTR |
| TAAAGAAACTGGCTCACTAA+TGG | 0.370262 | 1_4:-71169049 | None:intergenic |
| AGAACCCGGCAAGAGAAAAT+TGG | 0.374826 | 1_4:+71168676 | Msa0182560:CDS |
| ATGCTTTCTCATAAAGAAAC+TGG | 0.376112 | 1_4:-71169060 | None:intergenic |
| GATTTGCCGCAATTTATATT+CGG | 0.378150 | 1_4:+71168041 | Msa0182560:CDS |
| TGCTCTTAAAGCTCATTTGA+AGG | 0.379148 | 1_4:+71168085 | Msa0182560:CDS |
| TCATCTCATGGTTAGACATT+AGG | 0.392634 | 1_4:+71169179 | Msa0182560:CDS |
| ATTCTTCTTTGGCTCATCTT+GGG | 0.395376 | 1_4:-71169306 | None:intergenic |
| ATGACAACGACACTCCGATT+TGG | 0.395939 | 1_4:+71166476 | Msa0182560:CDS |
| ACAGAAGAAATTCTTTCATC+AGG | 0.403357 | 1_4:-71169145 | None:intergenic |
| ACAAGTTAAACTAACAGAAA+TGG | 0.404712 | 1_4:-71169489 | None:intergenic |
| GGTGTAAAGGTAAAGGGAAA+TGG | 0.409779 | 1_4:-71166508 | None:intergenic |
| ATGACTCCGTCCCAATCATT+TGG | 0.412702 | 1_4:-71168110 | None:intergenic |
| ATTTGAAGGAACCAAATGAT+TGG | 0.414265 | 1_4:+71168099 | Msa0182560:CDS |
| TTCAAAGTTCTTAAGTCACT+TGG | 0.425978 | 1_4:-71169340 | None:intergenic |
| GATTATGGTGTAAAGGTAAA+GGG | 0.435963 | 1_4:-71166514 | None:intergenic |
| TGAAAGGAATTCAAGGGGAT+TGG | 0.438456 | 1_4:+71167302 | Msa0182560:CDS |
| ACTTGATCATATCTTATTCA+AGG | 0.446112 | 1_4:+71166706 | Msa0182560:CDS |
| AGAAAGTGGTGACTGATTAT+CGG | 0.447228 | 1_4:-71169365 | None:intergenic |
| TGCATTCACTCTCAGTCTCA+GGG | 0.454337 | 1_4:-71166564 | None:intergenic |
| AACACCTTCAAGATTGTAGT+TGG | 0.461576 | 1_4:-71168581 | None:intergenic |
| GATATTGGATTATGGTGTAA+AGG | 0.462276 | 1_4:-71166521 | None:intergenic |
| GAACATGGCGTTCCAATCAA+AGG | 0.465267 | 1_4:+71167351 | Msa0182560:CDS |
| AGCTCCATGGTTACTGAGCT+TGG | 0.465639 | 1_4:-71166449 | None:intergenic |
| AACATGGCGTTCCAATCAAA+GGG | 0.467021 | 1_4:+71167352 | Msa0182560:CDS |
| CCTTCAGATAAACCGAAACC+TGG | 0.470797 | 1_4:-71167551 | None:intergenic |
| TTTGAAGGAACCAAATGATT+GGG | 0.476356 | 1_4:+71168100 | Msa0182560:CDS |
| CCAGGTTTCGGTTTATCTGA+AGG | 0.476945 | 1_4:+71167551 | Msa0182560:CDS |
| CCTTGTAGCTCCAATGTGTA+AGG | 0.478506 | 1_4:+71168133 | Msa0182560:CDS |
| GATCAAACACGATTAAGAAC+TGG | 0.479472 | 1_4:+71168821 | Msa0182560:CDS |
| CTCATCGCTGATACCTTCAA+TGG | 0.484364 | 1_4:-71166600 | None:intergenic |
| GGATTATGGTGTAAAGGTAA+AGG | 0.485551 | 1_4:-71166515 | None:intergenic |
| ATCAAGGTTAAGAGAAGCTA+TGG | 0.486484 | 1_4:-71166630 | None:intergenic |
| ACCGCCAACTACAATCTTGA+AGG | 0.491450 | 1_4:+71168577 | Msa0182560:CDS |
| TGCGGCAAATCCCTCACCTC+TGG | 0.492405 | 1_4:-71168029 | None:intergenic |
| AGTTCAGATAGATCCTTGTA+TGG | 0.502102 | 1_4:-71168644 | None:intergenic |
| TTGGTTATCAGTGGTATGAA+AGG | 0.504463 | 1_4:+71167286 | Msa0182560:intron |
| TTTATATTCGGACAGTCAAT+GGG | 0.504492 | 1_4:+71168053 | Msa0182560:CDS |
| GGTTTATCTGAAGGATTACA+TGG | 0.507433 | 1_4:+71167560 | Msa0182560:CDS |
| GTTTATGCAATGGATTTCCC+AGG | 0.516962 | 1_4:+71167533 | Msa0182560:CDS |
| TACGAGAAGGTGCATGATCA+AGG | 0.526915 | 1_4:-71166646 | None:intergenic |
| ATCTACATACTTCTAGAAAG+TGG | 0.527281 | 1_4:-71169379 | None:intergenic |
| TGGATTTGGTGTTTATGCAA+TGG | 0.528835 | 1_4:+71167523 | Msa0182560:CDS |
| CCTTACACATTGGAGCTACA+AGG | 0.538468 | 1_4:-71168133 | None:intergenic |
| TCAAAGTTCTTAAGTCACTT+GGG | 0.541694 | 1_4:-71169339 | None:intergenic |
| AGTGGTATGAAAGGAATTCA+AGG | 0.543776 | 1_4:+71167295 | Msa0182560:intron |
| TCGACTAAATCATCAAAACT+TGG | 0.545949 | 1_4:-71167590 | None:intergenic |
| ACTTCATGGAGCAGAAGATA+AGG | 0.548587 | 1_4:+71169018 | Msa0182560:CDS |
| GACAGCTAGACCAGAGGTGA+GGG | 0.549583 | 1_4:+71168019 | Msa0182560:intron |
| GGCAAAACTATTTCCATACA+AGG | 0.558367 | 1_4:+71168631 | Msa0182560:CDS |
| TTGATTGCCAAGATATCAGA+AGG | 0.558672 | 1_4:+71168548 | Msa0182560:intron |
| ACCTTCAAGATTGTAGTTGG+CGG | 0.559875 | 1_4:-71168578 | None:intergenic |
| ATAATTGTTCAGGTATTGCA+AGG | 0.560443 | 1_4:+71167486 | Msa0182560:intron |
| TCCATGGTTACTGAGCTTGG+TGG | 0.563373 | 1_4:-71166446 | None:intergenic |
| AAGACACTAAAGATCTATGA+AGG | 0.565411 | 1_4:+71169094 | Msa0182560:CDS |
| AACACGATTAAGAACTGGCA+TGG | 0.566445 | 1_4:+71168826 | Msa0182560:CDS |
| TCAAGATATTGAGTCACAGT+TGG | 0.570097 | 1_4:+71168865 | Msa0182560:CDS |
| GTGGTATGAAAGGAATTCAA+GGG | 0.572692 | 1_4:+71167296 | Msa0182560:intron |
| TATTGAGTCACAGTTGGAGA+AGG | 0.587825 | 1_4:+71168871 | Msa0182560:CDS |
| ATCTATGAAGGAGGTTACCA+TGG | 0.587933 | 1_4:+71169106 | Msa0182560:CDS |
| CTTGTCTAAAATGATGCCAA+AGG | 0.592063 | 1_4:+71168610 | Msa0182560:CDS |
| TCCATAATGACATCATCTCA+TGG | 0.596292 | 1_4:+71169167 | Msa0182560:CDS |
| AAAAGCTGGATGCCAGAACA+TGG | 0.599820 | 1_4:+71167336 | Msa0182560:CDS |
| TTTGTTAGTTTGTTAGAGTG+TGG | 0.611501 | 1_4:+71169457 | Msa0182560:three_prime_UTR |
| CTGTGACTCAATATCTTGAG+TGG | 0.612313 | 1_4:-71168861 | None:intergenic |
| AAGGAACCAAATGATTGGGA+CGG | 0.614530 | 1_4:+71168104 | Msa0182560:CDS |
| GACTGTCCGAATATAAATTG+CGG | 0.618570 | 1_4:-71168047 | None:intergenic |
| TCCACCAAGCTCAGTAACCA+TGG | 0.619324 | 1_4:+71166445 | Msa0182560:exon |
| CTTCAGATAAACCGAAACCT+GGG | 0.619450 | 1_4:-71167550 | None:intergenic |
| CGTTGTCATAGATAGCTCCA+TGG | 0.621711 | 1_4:-71166462 | None:intergenic |
| ATATTCGGACAGTCAATGGG+TGG | 0.631708 | 1_4:+71168056 | Msa0182560:CDS |
| GGTGCTCAAGATAATTGTGG+TGG | 0.638846 | 1_4:+71169200 | Msa0182560:exon |
| TGACAGCTAGACCAGAGGTG+AGG | 0.639641 | 1_4:+71168018 | Msa0182560:intron |
| AATGGACATACCTTACACAT+TGG | 0.639810 | 1_4:-71168143 | None:intergenic |
| TTAGGTGCTCAAGATAATTG+TGG | 0.643784 | 1_4:+71169197 | Msa0182560:exon |
| GTTCACCTTCCAAAATGCCA+TGG | 0.645530 | 1_4:-71169123 | None:intergenic |
| TGTCGAACATGTCTACGAGA+AGG | 0.657476 | 1_4:-71166659 | None:intergenic |
| TTGCTGATGCACATGAGTGA+AGG | 0.663071 | 1_4:-71166684 | None:intergenic |
| TGGTATGAAAGGAATTCAAG+GGG | 0.670152 | 1_4:+71167297 | Msa0182560:CDS |
| TACATTGACAGCTAGACCAG+AGG | 0.671347 | 1_4:+71168013 | Msa0182560:intron |
| ACACTAAAGATCTATGAAGG+AGG | 0.678648 | 1_4:+71169097 | Msa0182560:CDS |
| TGGAGTTTGAACAGAGCATG+TGG | 0.689301 | 1_4:-71166426 | None:intergenic |
| ACATGGCGTTCCAATCAAAG+GGG | 0.730927 | 1_4:+71167353 | Msa0182560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGAAGATTAGTTTAAAA+AGG | + | chr1_4:71167756-71167775 | Msa0182560:intron | 15.0% |
| !! | AAAAAATATAGCTATAGTAT+AGG | - | chr1_4:71168947-71168966 | None:intergenic | 15.0% |
| !!! | TTTCATTCTGAATTTTATTA+TGG | + | chr1_4:71169233-71169252 | Msa0182560:three_prime_UTR | 15.0% |
| !!! | TTTTATTTTTATAGCAGTTT+AGG | + | chr1_4:71169570-71169589 | Msa0182560:three_prime_UTR | 15.0% |
| !!! | AGTTTTTTGATATTGGATTA+TGG | - | chr1_4:71166532-71166551 | None:intergenic | 20.0% |
| !!! | TTTGTAGAGTTTTTTGATAT+TGG | - | chr1_4:71166539-71166558 | None:intergenic | 20.0% |
| !!! | TGATGTCTATACATTAATTT+TGG | + | chr1_4:71167267-71167286 | Msa0182560:intron | 20.0% |
| !!! | ATTGATTTGAATAATTGTTC+AGG | + | chr1_4:71167476-71167495 | Msa0182560:intron | 20.0% |
| !! | GAATTCCATACAAAAATTAA+AGG | + | chr1_4:71167623-71167642 | Msa0182560:CDS | 20.0% |
| !!! | TCATACCTTTAATTTTTGTA+TGG | - | chr1_4:71167631-71167650 | None:intergenic | 20.0% |
| !! | TAATCCAAGATCAATTTATA+TGG | + | chr1_4:71168437-71168456 | Msa0182560:intron | 20.0% |
| !! | AATCCAAGATCAATTTATAT+GGG | + | chr1_4:71168438-71168457 | Msa0182560:intron | 20.0% |
| !! | TCATTGTCATATATAATTTC+AGG | + | chr1_4:71168976-71168995 | Msa0182560:intron | 20.0% |
| ! | ACTTGATCATATCTTATTCA+AGG | + | chr1_4:71166706-71166725 | Msa0182560:CDS | 25.0% |
| !! | TATGAAATGAAAAAAGTGTG+AGG | - | chr1_4:71166751-71166770 | None:intergenic | 25.0% |
| !!! | TTCTTTGTTTGTGTTTTTCA+TGG | + | chr1_4:71166798-71166817 | Msa0182560:intron | 25.0% |
| ! | TTCAAATAAGTCGATCTAAA+GGG | - | chr1_4:71167001-71167020 | None:intergenic | 25.0% |
| ! | CTTATGAAAACATCTTACTT+AGG | - | chr1_4:71167152-71167171 | None:intergenic | 25.0% |
| ! | AAGCACTTATTAGACTATTT+GGG | - | chr1_4:71167179-71167198 | None:intergenic | 25.0% |
| ! | TAAGCACTTATTAGACTATT+TGG | - | chr1_4:71167180-71167199 | None:intergenic | 25.0% |
| ! | ATAACACATTTCACAGTTTA+GGG | - | chr1_4:71167239-71167258 | None:intergenic | 25.0% |
| !!! | ACATTAATTTTGGTTATCAG+TGG | + | chr1_4:71167277-71167296 | Msa0182560:intron | 25.0% |
| ! | ATCACGATTGCTAAAATAAA+AGG | - | chr1_4:71167654-71167673 | None:intergenic | 25.0% |
| ! | ATGATGTGTAAAAAACTACA+AGG | + | chr1_4:71167723-71167742 | Msa0182560:intron | 25.0% |
| !!! | GAAGATTAGTTTAAAAAGGA+TGG | + | chr1_4:71167760-71167779 | Msa0182560:intron | 25.0% |
| ! | CTTTGCTTAAAAATCAATGA+TGG | - | chr1_4:71167813-71167832 | None:intergenic | 25.0% |
| !!! | CATCATTGATTTTTAAGCAA+AGG | + | chr1_4:71167811-71167830 | Msa0182560:intron | 25.0% |
| ! | TGTAATTTCTTTGACATCTA+AGG | + | chr1_4:71168249-71168268 | Msa0182560:intron | 25.0% |
| !! | GATTATTTCCAATATCGATT+TGG | - | chr1_4:71168422-71168441 | None:intergenic | 25.0% |
| ! | TTTCCCATATAAATTGATCT+TGG | - | chr1_4:71168444-71168463 | None:intergenic | 25.0% |
| ! | GATCAATTTATATGGGAAAA+TGG | + | chr1_4:71168445-71168464 | Msa0182560:intron | 25.0% |
| !! | ACTATCTATCATTTGTTGAA+TGG | + | chr1_4:71168469-71168488 | Msa0182560:intron | 25.0% |
| !!! | TTGGTTGGTAATTTAATTTG+TGG | + | chr1_4:71168695-71168714 | Msa0182560:intron | 25.0% |
| ! | GAACAAATGCATAGTTAATT+TGG | - | chr1_4:71168762-71168781 | None:intergenic | 25.0% |
| !! | GCATTTGTTCTTTCTTTTAT+AGG | + | chr1_4:71168772-71168791 | Msa0182560:intron | 25.0% |
| !!! | GCTTAAGTTTTATTCTTCTT+TGG | - | chr1_4:71169320-71169339 | None:intergenic | 25.0% |
| ! | ACAAGTTAAACTAACAGAAA+TGG | - | chr1_4:71169492-71169511 | None:intergenic | 25.0% |
| !!! | TTAGTTTAACTTGTAGTAGT+AGG | + | chr1_4:71169498-71169517 | Msa0182560:three_prime_UTR | 25.0% |
| !!! | AATGGTTTTGTGATCCAAAT+CGG | - | chr1_4:71166493-71166512 | None:intergenic | 30.0% |
| GATTATGGTGTAAAGGTAAA+GGG | - | chr1_4:71166517-71166536 | None:intergenic | 30.0% | |
| GATATTGGATTATGGTGTAA+AGG | - | chr1_4:71166524-71166543 | None:intergenic | 30.0% | |
| AAGAAAAAGTCAACCATTGA+AGG | + | chr1_4:71166587-71166606 | Msa0182560:CDS | 30.0% | |
| ! | TGTTTGTGTTTTTCATGGAA+TGG | + | chr1_4:71166803-71166822 | Msa0182560:intron | 30.0% |
| GTTCAAATAAGTCGATCTAA+AGG | - | chr1_4:71167002-71167021 | None:intergenic | 30.0% | |
| CATAACACATTTCACAGTTT+AGG | - | chr1_4:71167240-71167259 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTGTCATGGATA+TGG | + | chr1_4:71167378-71167397 | Msa0182560:CDS | 30.0% |
| CTAGAGAGTTATCAAATTTG+AGG | + | chr1_4:71167446-71167465 | Msa0182560:intron | 30.0% | |
| AGAGTTATCAAATTTGAGGA+TGG | + | chr1_4:71167450-71167469 | Msa0182560:intron | 30.0% | |
| ! | ATAATTGTTCAGGTATTGCA+AGG | + | chr1_4:71167486-71167505 | Msa0182560:intron | 30.0% |
| TCGACTAAATCATCAAAACT+TGG | - | chr1_4:71167593-71167612 | None:intergenic | 30.0% | |
| !! | GATTAGTTTAAAAAGGATGG+AGG | + | chr1_4:71167763-71167782 | Msa0182560:intron | 30.0% |
| GATTTGCCGCAATTTATATT+CGG | + | chr1_4:71168041-71168060 | Msa0182560:CDS | 30.0% | |
| ATTTATATTCGGACAGTCAA+TGG | + | chr1_4:71168052-71168071 | Msa0182560:CDS | 30.0% | |
| TTTATATTCGGACAGTCAAT+GGG | + | chr1_4:71168053-71168072 | Msa0182560:CDS | 30.0% | |
| ATTTGAAGGAACCAAATGAT+TGG | + | chr1_4:71168099-71168118 | Msa0182560:CDS | 30.0% | |
| TTTGAAGGAACCAAATGATT+GGG | + | chr1_4:71168100-71168119 | Msa0182560:CDS | 30.0% | |
| TGTCAAAGAAATTACAAGAG+TGG | - | chr1_4:71168245-71168264 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAAGAATAC+TGG | - | chr1_4:71168314-71168333 | None:intergenic | 30.0% | |
| ! | CAAGTTTGAGATTCAATACT+TGG | + | chr1_4:71168325-71168344 | Msa0182560:intron | 30.0% |
| TCAAACAAGAACAACAAATC+AGG | - | chr1_4:71168532-71168551 | None:intergenic | 30.0% | |
| !! | TATGGAAATAGTTTTGCCTT+TGG | - | chr1_4:71168629-71168648 | None:intergenic | 30.0% |
| ATGCTTTCTCATAAAGAAAC+TGG | - | chr1_4:71169063-71169082 | None:intergenic | 30.0% | |
| AAGACACTAAAGATCTATGA+AGG | + | chr1_4:71169094-71169113 | Msa0182560:CDS | 30.0% | |
| ACAGAAGAAATTCTTTCATC+AGG | - | chr1_4:71169148-71169167 | None:intergenic | 30.0% | |
| TCAAAGTTCTTAAGTCACTT+GGG | - | chr1_4:71169342-71169361 | None:intergenic | 30.0% | |
| TTCAAAGTTCTTAAGTCACT+TGG | - | chr1_4:71169343-71169362 | None:intergenic | 30.0% | |
| ! | ATCTACATACTTCTAGAAAG+TGG | - | chr1_4:71169382-71169401 | None:intergenic | 30.0% |
| !! | TTTGTTAGTTTGTTAGAGTG+TGG | + | chr1_4:71169457-71169476 | Msa0182560:three_prime_UTR | 30.0% |
| AACTTGTAGTAGTAGGAAAT+TGG | + | chr1_4:71169505-71169524 | Msa0182560:three_prime_UTR | 30.0% | |
| GGATTATGGTGTAAAGGTAA+AGG | - | chr1_4:71166518-71166537 | None:intergenic | 35.0% | |
| ATCAAGGTTAAGAGAAGCTA+TGG | - | chr1_4:71166633-71166652 | None:intergenic | 35.0% | |
| GTCACACAAATGTTTATGTC+AGG | - | chr1_4:71167031-71167050 | None:intergenic | 35.0% | |
| TTGGTTATCAGTGGTATGAA+AGG | + | chr1_4:71167286-71167305 | Msa0182560:intron | 35.0% | |
| AGTGGTATGAAAGGAATTCA+AGG | + | chr1_4:71167295-71167314 | Msa0182560:intron | 35.0% | |
| GTGGTATGAAAGGAATTCAA+GGG | + | chr1_4:71167296-71167315 | Msa0182560:intron | 35.0% | |
| TGGTATGAAAGGAATTCAAG+GGG | + | chr1_4:71167297-71167316 | Msa0182560:CDS | 35.0% | |
| AAAAACAAAGCCCCTTTGAT+TGG | - | chr1_4:71167366-71167385 | None:intergenic | 35.0% | |
| ACTTGCACTTTCTTCTTTGA+AGG | + | chr1_4:71167405-71167424 | Msa0182560:CDS | 35.0% | |
| ! | ATTTGATAACTCTCTAGCTC+TGG | - | chr1_4:71167443-71167462 | None:intergenic | 35.0% |
| !!! | ATTTTAGCTGCTTCTGGATT+TGG | + | chr1_4:71167509-71167528 | Msa0182560:CDS | 35.0% |
| !! | TGGATTTGGTGTTTATGCAA+TGG | + | chr1_4:71167523-71167542 | Msa0182560:CDS | 35.0% |
| GGTTTATCTGAAGGATTACA+TGG | + | chr1_4:71167560-71167579 | Msa0182560:CDS | 35.0% | |
| ATAGATTGCAACAACGATCA+CGG | - | chr1_4:71167681-71167700 | None:intergenic | 35.0% | |
| GTCAATGTAAATGCATCGAA+AGG | - | chr1_4:71168002-71168021 | None:intergenic | 35.0% | |
| GACTGTCCGAATATAAATTG+CGG | - | chr1_4:71168050-71168069 | None:intergenic | 35.0% | |
| TGCTCTTAAAGCTCATTTGA+AGG | + | chr1_4:71168085-71168104 | Msa0182560:CDS | 35.0% | |
| AATGGACATACCTTACACAT+TGG | - | chr1_4:71168146-71168165 | None:intergenic | 35.0% | |
| ! | TGCAAAAGAATACTGGTTGA+GGG | - | chr1_4:71168307-71168326 | None:intergenic | 35.0% |
| ! | TTGCAAAAGAATACTGGTTG+AGG | - | chr1_4:71168308-71168327 | None:intergenic | 35.0% |
| ! | GCTTTTGTCCAAATCGATAT+TGG | + | chr1_4:71168411-71168430 | Msa0182560:intron | 35.0% |
| AGTTGTATTAGCACATCTGT+TGG | + | chr1_4:71168500-71168519 | Msa0182560:intron | 35.0% | |
| TTGATTGCCAAGATATCAGA+AGG | + | chr1_4:71168548-71168567 | Msa0182560:intron | 35.0% | |
| TAACATGCCTTCTGATATCT+TGG | - | chr1_4:71168558-71168577 | None:intergenic | 35.0% | |
| AACACCTTCAAGATTGTAGT+TGG | - | chr1_4:71168584-71168603 | None:intergenic | 35.0% | |
| ! | CTTGTCTAAAATGATGCCAA+AGG | + | chr1_4:71168610-71168629 | Msa0182560:CDS | 35.0% |
| GGCAAAACTATTTCCATACA+AGG | + | chr1_4:71168631-71168650 | Msa0182560:CDS | 35.0% | |
| AGTTCAGATAGATCCTTGTA+TGG | - | chr1_4:71168647-71168666 | None:intergenic | 35.0% | |
| ! | TGGTAGAGTGCAAATTTTCA+AGG | - | chr1_4:71168742-71168761 | None:intergenic | 35.0% |
| GATCAAACACGATTAAGAAC+TGG | + | chr1_4:71168821-71168840 | Msa0182560:CDS | 35.0% | |
| TCAAGATATTGAGTCACAGT+TGG | + | chr1_4:71168865-71168884 | Msa0182560:CDS | 35.0% | |
| TTTGCTCACTTTCTGTTACT+TGG | + | chr1_4:71168907-71168926 | Msa0182560:intron | 35.0% | |
| GCTCCATTATTGATACTTCA+TGG | + | chr1_4:71169004-71169023 | Msa0182560:CDS | 35.0% | |
| ! | GCTCCATGAAGTATCAATAA+TGG | - | chr1_4:71169010-71169029 | None:intergenic | 35.0% |
| ! | TAAAGAAACTGGCTCACTAA+TGG | - | chr1_4:71169052-71169071 | None:intergenic | 35.0% |
| ACACTAAAGATCTATGAAGG+AGG | + | chr1_4:71169097-71169116 | Msa0182560:CDS | 35.0% | |
| TCCATAATGACATCATCTCA+TGG | + | chr1_4:71169167-71169186 | Msa0182560:CDS | 35.0% | |
| ACCATGAGATGATGTCATTA+TGG | - | chr1_4:71169171-71169190 | None:intergenic | 35.0% | |
| TCATCTCATGGTTAGACATT+AGG | + | chr1_4:71169179-71169198 | Msa0182560:CDS | 35.0% | |
| TTAGGTGCTCAAGATAATTG+TGG | + | chr1_4:71169197-71169216 | Msa0182560:exon | 35.0% | |
| ! | ATTCTTCTTTGGCTCATCTT+GGG | - | chr1_4:71169309-71169328 | None:intergenic | 35.0% |
| ! | TATTCTTCTTTGGCTCATCT+TGG | - | chr1_4:71169310-71169329 | None:intergenic | 35.0% |
| AGAAAGTGGTGACTGATTAT+CGG | - | chr1_4:71169368-71169387 | None:intergenic | 35.0% | |
| GGTGTAAAGGTAAAGGGAAA+TGG | - | chr1_4:71166511-71166530 | None:intergenic | 40.0% | |
| TATAATAGACTGCACCTGCT+GGG | + | chr1_4:71166833-71166852 | Msa0182560:intron | 40.0% | |
| ! | CGATGATGATGAGTATAGCA+AGG | + | chr1_4:71166910-71166929 | Msa0182560:intron | 40.0% |
| ! | TTCACAGTTTAGGGCATGTT+TGG | - | chr1_4:71167230-71167249 | None:intergenic | 40.0% |
| TGAAAGGAATTCAAGGGGAT+TGG | + | chr1_4:71167302-71167321 | Msa0182560:CDS | 40.0% | |
| ! | TGGAGATTTTCTGCAAAAGC+TGG | + | chr1_4:71167322-71167341 | Msa0182560:CDS | 40.0% |
| AACATGGCGTTCCAATCAAA+GGG | + | chr1_4:71167352-71167371 | Msa0182560:CDS | 40.0% | |
| ! | GTTTATGCAATGGATTTCCC+AGG | + | chr1_4:71167533-71167552 | Msa0182560:CDS | 40.0% |
| CTTCAGATAAACCGAAACCT+GGG | - | chr1_4:71167553-71167572 | None:intergenic | 40.0% | |
| AAGGAACCAAATGATTGGGA+CGG | + | chr1_4:71168104-71168123 | Msa0182560:CDS | 40.0% | |
| TCAAATGCAACACAGAGGAA+TGG | - | chr1_4:71168164-71168183 | None:intergenic | 40.0% | |
| CAACATCAAATGCAACACAG+AGG | - | chr1_4:71168169-71168188 | None:intergenic | 40.0% | |
| ACCTTCAAGATTGTAGTTGG+CGG | - | chr1_4:71168581-71168600 | None:intergenic | 40.0% | |
| !! | GAACTTATTTTCCGAGAACC+CGG | + | chr1_4:71168662-71168681 | Msa0182560:CDS | 40.0% |
| ! | ACCAACCAATTTTCTCTTGC+CGG | - | chr1_4:71168684-71168703 | None:intergenic | 40.0% |
| AACACGATTAAGAACTGGCA+TGG | + | chr1_4:71168826-71168845 | Msa0182560:CDS | 40.0% | |
| CTGTGACTCAATATCTTGAG+TGG | - | chr1_4:71168864-71168883 | None:intergenic | 40.0% | |
| TATTGAGTCACAGTTGGAGA+AGG | + | chr1_4:71168871-71168890 | Msa0182560:CDS | 40.0% | |
| ACTTCATGGAGCAGAAGATA+AGG | + | chr1_4:71169018-71169037 | Msa0182560:CDS | 40.0% | |
| ATCTATGAAGGAGGTTACCA+TGG | + | chr1_4:71169106-71169125 | Msa0182560:CDS | 40.0% | |
| TGGAGTTTGAACAGAGCATG+TGG | - | chr1_4:71166429-71166448 | None:intergenic | 45.0% | |
| CGTTGTCATAGATAGCTCCA+TGG | - | chr1_4:71166465-71166484 | None:intergenic | 45.0% | |
| ATGACAACGACACTCCGATT+TGG | + | chr1_4:71166476-71166495 | Msa0182560:CDS | 45.0% | |
| TGCATTCACTCTCAGTCTCA+GGG | - | chr1_4:71166567-71166586 | None:intergenic | 45.0% | |
| TTGCATTCACTCTCAGTCTC+AGG | - | chr1_4:71166568-71166587 | None:intergenic | 45.0% | |
| CTCATCGCTGATACCTTCAA+TGG | - | chr1_4:71166603-71166622 | None:intergenic | 45.0% | |
| ! | TACGAGAAGGTGCATGATCA+AGG | - | chr1_4:71166649-71166668 | None:intergenic | 45.0% |
| TGTCGAACATGTCTACGAGA+AGG | - | chr1_4:71166662-71166681 | None:intergenic | 45.0% | |
| TTGCTGATGCACATGAGTGA+AGG | - | chr1_4:71166687-71166706 | None:intergenic | 45.0% | |
| CTATAATAGACTGCACCTGC+TGG | + | chr1_4:71166832-71166851 | Msa0182560:intron | 45.0% | |
| TCTTGAGTTATGATCCCAGC+AGG | - | chr1_4:71166850-71166869 | None:intergenic | 45.0% | |
| TGAGTATAGCAAGGCATGCT+TGG | + | chr1_4:71166919-71166938 | Msa0182560:intron | 45.0% | |
| AAAAGCTGGATGCCAGAACA+TGG | + | chr1_4:71167336-71167355 | Msa0182560:CDS | 45.0% | |
| TTGATTGGAACGCCATGTTC+TGG | - | chr1_4:71167351-71167370 | None:intergenic | 45.0% | |
| GAACATGGCGTTCCAATCAA+AGG | + | chr1_4:71167351-71167370 | Msa0182560:CDS | 45.0% | |
| ACATGGCGTTCCAATCAAAG+GGG | + | chr1_4:71167353-71167372 | Msa0182560:CDS | 45.0% | |
| !!! | GGGGCTTTGTTTTTCTGTCA+TGG | + | chr1_4:71167372-71167391 | Msa0182560:CDS | 45.0% |
| !!! | GCAAGGATTTTAGCTGCTTC+TGG | + | chr1_4:71167503-71167522 | Msa0182560:CDS | 45.0% |
| ! | GCAATGGATTTCCCAGGTTT+CGG | + | chr1_4:71167539-71167558 | Msa0182560:CDS | 45.0% |
| CCTTCAGATAAACCGAAACC+TGG | - | chr1_4:71167554-71167573 | None:intergenic | 45.0% | |
| CCAGGTTTCGGTTTATCTGA+AGG | + | chr1_4:71167551-71167570 | Msa0182560:CDS | 45.0% | |
| TACATTGACAGCTAGACCAG+AGG | + | chr1_4:71168013-71168032 | Msa0182560:intron | 45.0% | |
| ATATTCGGACAGTCAATGGG+TGG | + | chr1_4:71168056-71168075 | Msa0182560:CDS | 45.0% | |
| ATGACTCCGTCCCAATCATT+TGG | - | chr1_4:71168113-71168132 | None:intergenic | 45.0% | |
| CCTTACACATTGGAGCTACA+AGG | - | chr1_4:71168136-71168155 | None:intergenic | 45.0% | |
| CCTTGTAGCTCCAATGTGTA+AGG | + | chr1_4:71168133-71168152 | Msa0182560:CDS | 45.0% | |
| ACCGCCAACTACAATCTTGA+AGG | + | chr1_4:71168577-71168596 | Msa0182560:CDS | 45.0% | |
| ! | ATTTTCTCTTGCCGGGTTCT+CGG | - | chr1_4:71168676-71168695 | None:intergenic | 45.0% |
| AGAACCCGGCAAGAGAAAAT+TGG | + | chr1_4:71168676-71168695 | Msa0182560:CDS | 45.0% | |
| ! | CCAACCAATTTTCTCTTGCC+GGG | - | chr1_4:71168683-71168702 | None:intergenic | 45.0% |
| ! | AGGAGGTTACCATGGCATTT+TGG | + | chr1_4:71169114-71169133 | Msa0182560:CDS | 45.0% |
| ! | GGTTACCATGGCATTTTGGA+AGG | + | chr1_4:71169118-71169137 | Msa0182560:CDS | 45.0% |
| GTTCACCTTCCAAAATGCCA+TGG | - | chr1_4:71169126-71169145 | None:intergenic | 45.0% | |
| GGTGCTCAAGATAATTGTGG+TGG | + | chr1_4:71169200-71169219 | Msa0182560:exon | 45.0% | |
| TCCACCAAGCTCAGTAACCA+TGG | + | chr1_4:71166445-71166464 | Msa0182560:exon | 50.0% | |
| TCCATGGTTACTGAGCTTGG+TGG | - | chr1_4:71166449-71166468 | None:intergenic | 50.0% | |
| AGCTCCATGGTTACTGAGCT+TGG | - | chr1_4:71166452-71166471 | None:intergenic | 50.0% | |
| CCCGGCAAGAGAAAATTGGT+TGG | + | chr1_4:71168680-71168699 | Msa0182560:intron | 50.0% | |
| TGACAGCTAGACCAGAGGTG+AGG | + | chr1_4:71168018-71168037 | Msa0182560:intron | 55.0% | |
| GACAGCTAGACCAGAGGTGA+GGG | + | chr1_4:71168019-71168038 | Msa0182560:intron | 55.0% | |
| TGCGGCAAATCCCTCACCTC+TGG | - | chr1_4:71168032-71168051 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 71166396 | 71169593 | 71166396 | ID=Msa0182560;Name=Msa0182560 |
| chr1_4 | mRNA | 71166396 | 71169593 | 71166396 | ID=Msa0182560-mRNA-1;Parent=Msa0182560;Name=Msa0182560-mRNA-1;_AED=0.11;_eAED=0.11;_QI=68|0.83|1|1|1|1|7|380|374 |
| chr1_4 | exon | 71166396 | 71166727 | 71166396 | ID=Msa0182560-mRNA-1:exon:23851;Parent=Msa0182560-mRNA-1 |
| chr1_4 | exon | 71167297 | 71167426 | 71167297 | ID=Msa0182560-mRNA-1:exon:23852;Parent=Msa0182560-mRNA-1 |
| chr1_4 | exon | 71167498 | 71167644 | 71167498 | ID=Msa0182560-mRNA-1:exon:23853;Parent=Msa0182560-mRNA-1 |
| chr1_4 | exon | 71168024 | 71168154 | 71168024 | ID=Msa0182560-mRNA-1:exon:23854;Parent=Msa0182560-mRNA-1 |
| chr1_4 | exon | 71168560 | 71168697 | 71168560 | ID=Msa0182560-mRNA-1:exon:23855;Parent=Msa0182560-mRNA-1 |
| chr1_4 | exon | 71168794 | 71168892 | 71168794 | ID=Msa0182560-mRNA-1:exon:23856;Parent=Msa0182560-mRNA-1 |
| chr1_4 | exon | 71168998 | 71169593 | 71168998 | ID=Msa0182560-mRNA-1:exon:23857;Parent=Msa0182560-mRNA-1 |
| chr1_4 | five_prime_UTR | 71166396 | 71166463 | 71166396 | ID=Msa0182560-mRNA-1:five_prime_utr;Parent=Msa0182560-mRNA-1 |
| chr1_4 | CDS | 71166464 | 71166727 | 71166464 | ID=Msa0182560-mRNA-1:cds;Parent=Msa0182560-mRNA-1 |
| chr1_4 | CDS | 71167297 | 71167426 | 71167297 | ID=Msa0182560-mRNA-1:cds;Parent=Msa0182560-mRNA-1 |
| chr1_4 | CDS | 71167498 | 71167644 | 71167498 | ID=Msa0182560-mRNA-1:cds;Parent=Msa0182560-mRNA-1 |
| chr1_4 | CDS | 71168024 | 71168154 | 71168024 | ID=Msa0182560-mRNA-1:cds;Parent=Msa0182560-mRNA-1 |
| chr1_4 | CDS | 71168560 | 71168697 | 71168560 | ID=Msa0182560-mRNA-1:cds;Parent=Msa0182560-mRNA-1 |
| chr1_4 | CDS | 71168794 | 71168892 | 71168794 | ID=Msa0182560-mRNA-1:cds;Parent=Msa0182560-mRNA-1 |
| chr1_4 | CDS | 71168998 | 71169213 | 71168998 | ID=Msa0182560-mRNA-1:cds;Parent=Msa0182560-mRNA-1 |
| chr1_4 | three_prime_UTR | 71169214 | 71169593 | 71169214 | ID=Msa0182560-mRNA-1:three_prime_utr;Parent=Msa0182560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
