Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090090 | XP_039685961.1 | 92.708 | 384 | 14 | 3 | 1 | 374 | 1 | 380 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090090 | sp|Q9C942|CSE_ARATH | 34.828 | 290 | 181 | 3 | 92 | 374 | 38 | 326 | 2.59e-53 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090090 | A0A396K0S6 | 92.708 | 384 | 14 | 3 | 1 | 374 | 1 | 380 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009640 | Msa0090090 | 0.809592 | 1.753349e-50 | -8.615850e-47 |
| Msa0022470 | Msa0090090 | 0.819010 | 1.453407e-52 | -8.615850e-47 |
| Msa0023060 | Msa0090090 | 0.806891 | 6.599260e-50 | -8.615850e-47 |
| Msa0043740 | Msa0090090 | 0.980080 | 2.118028e-149 | -8.615850e-47 |
| Msa0051960 | Msa0090090 | 0.833795 | 4.342689e-56 | -8.615850e-47 |
| Msa0090090 | Msa0090380 | 0.802340 | 5.878164e-49 | -8.615850e-47 |
| Msa0090090 | Msa0094710 | 0.843882 | 1.066183e-58 | -8.615850e-47 |
| Msa0090090 | Msa0095940 | 0.808708 | 2.711565e-50 | -8.615850e-47 |
| Msa0090090 | Msa0101960 | 0.836155 | 1.104505e-56 | -8.615850e-47 |
| Msa0090090 | Msa0118010 | 0.821941 | 3.089578e-53 | -8.615850e-47 |
| Msa0090090 | Msa0119430 | 0.805147 | 1.536162e-49 | -8.615850e-47 |
| Msa0090090 | Msa0136270 | 0.821399 | 4.122252e-53 | -8.615850e-47 |
| Msa0090090 | Msa0137560 | 0.994555 | 3.226417e-208 | -8.615850e-47 |
| Msa0090090 | Msa0139680 | 0.850992 | 1.185719e-60 | -8.615850e-47 |
| Msa0090090 | Msa0161560 | 0.805937 | 1.048678e-49 | -8.615850e-47 |
| Msa0090090 | Msa0167570 | -0.805237 | 1.471039e-49 | -8.615850e-47 |
| Msa0090090 | Msa0170770 | 0.842282 | 2.843473e-58 | -8.615850e-47 |
| Msa0090090 | Msa0171330 | 0.807455 | 5.013184e-50 | -8.615850e-47 |
| Msa0090090 | Msa0182560 | 0.974079 | 1.580083e-137 | -8.615850e-47 |
| Msa0090090 | Msa0185100 | 0.816062 | 6.712196e-52 | -8.615850e-47 |
| Msa0090090 | Msa0189600 | 0.829010 | 6.539564e-55 | -8.615850e-47 |
| Msa0090090 | Msa0193190 | 0.833504 | 5.134019e-56 | -8.615850e-47 |
| Msa0090090 | Msa0204830 | 0.800453 | 1.431095e-48 | -8.615850e-47 |
| Msa0090090 | Msa0224130 | 0.814560 | 1.447690e-51 | -8.615850e-47 |
| Msa0090090 | Msa0225190 | -0.802918 | 4.465670e-49 | -8.615850e-47 |
| Msa0090090 | Msa0244890 | 0.828431 | 9.025395e-55 | -8.615850e-47 |
| Msa0090090 | Msa0253960 | 0.811301 | 7.496246e-51 | -8.615850e-47 |
| Msa0090090 | Msa0257900 | 0.841714 | 4.017901e-58 | -8.615850e-47 |
| Msa0090090 | Msa0257910 | 0.835739 | 1.407819e-56 | -8.615850e-47 |
| Msa0090090 | Msa0265270 | 0.815010 | 1.150852e-51 | -8.615850e-47 |
| Msa0090090 | Msa0271540 | 0.835695 | 1.444827e-56 | -8.615850e-47 |
| Msa0090090 | Msa0273070 | 0.823071 | 1.687081e-53 | -8.615850e-47 |
| Msa0090090 | Msa0283490 | 0.822066 | 2.890073e-53 | -8.615850e-47 |
| Msa0090090 | Msa0296900 | 0.842658 | 2.261231e-58 | -8.615850e-47 |
| Msa0090090 | Msa0296910 | 0.855511 | 6.008409e-62 | -8.615850e-47 |
| Msa0090090 | Msa0299530 | -0.807905 | 4.021987e-50 | -8.615850e-47 |
| Msa0090090 | Msa0307420 | 0.839060 | 1.986307e-57 | -8.615850e-47 |
| Msa0090090 | Msa0319260 | 0.821720 | 3.474724e-53 | -8.615850e-47 |
| Msa0090090 | Msa0319270 | 0.829355 | 5.393049e-55 | -8.615850e-47 |
| Msa0090090 | Msa0331970 | 0.811466 | 6.903012e-51 | -8.615850e-47 |
| Msa0090090 | Msa0335070 | 0.865712 | 4.838459e-65 | -8.615850e-47 |
| Msa0090090 | Msa0335080 | 0.865150 | 7.275490e-65 | -8.615850e-47 |
| Msa0090090 | Msa0345050 | 0.802854 | 4.604282e-49 | -8.615850e-47 |
| Msa0090090 | Msa0355550 | 0.827868 | 1.233556e-54 | -8.615850e-47 |
| Msa0090090 | Msa0383900 | 0.812737 | 3.647617e-51 | -8.615850e-47 |
| Msa0090090 | Msa0387040 | 0.839191 | 1.836932e-57 | -8.615850e-47 |
| Msa0090090 | Msa0408340 | 0.833759 | 4.433285e-56 | -8.615850e-47 |
| Msa0090090 | Msa0415100 | 0.806895 | 6.587130e-50 | -8.615850e-47 |
| Msa0090090 | Msa0415640 | 0.841322 | 5.096977e-58 | -8.615850e-47 |
| Msa0090090 | Msa0434300 | 0.804903 | 1.727197e-49 | -8.615850e-47 |
| Msa0090090 | Msa0434400 | 0.813944 | 1.980552e-51 | -8.615850e-47 |
| Msa0090090 | Msa0460600 | 0.815483 | 9.031604e-52 | -8.615850e-47 |
| Msa0090090 | Msa0480930 | 0.823736 | 1.179862e-53 | -8.615850e-47 |
| Msa0090090 | Msa0488580 | 0.803264 | 3.788499e-49 | -8.615850e-47 |
| Msa0090090 | Msa0501410 | 0.840807 | 6.960993e-58 | -8.615850e-47 |
| Msa0090090 | Msa0517270 | 0.834921 | 2.265486e-56 | -8.615850e-47 |
| Msa0090090 | Msa0534270 | 0.831087 | 2.036663e-55 | -8.615850e-47 |
| Msa0090090 | Msa0536540 | 0.851503 | 8.504481e-61 | -8.615850e-47 |
| Msa0090090 | Msa0551810 | 0.802729 | 4.886251e-49 | -8.615850e-47 |
| Msa0090090 | Msa0558390 | 0.807158 | 5.794008e-50 | -8.615850e-47 |
| Msa0090090 | Msa0558570 | 0.826203 | 3.085210e-54 | -8.615850e-47 |
| Msa0090090 | Msa0567430 | 0.813883 | 2.043298e-51 | -8.615850e-47 |
| Msa0090090 | Msa0567480 | 0.810181 | 1.309888e-50 | -8.615850e-47 |
| Msa0090090 | Msa0588710 | 0.839060 | 1.985378e-57 | -8.615850e-47 |
| Msa0090090 | Msa0590390 | 0.805516 | 1.285546e-49 | -8.615850e-47 |
| Msa0090090 | Msa0592650 | 0.847668 | 9.999626e-60 | -8.615850e-47 |
| Msa0090090 | Msa0592660 | 0.838509 | 2.756985e-57 | -8.615850e-47 |
| Msa0090090 | Msa0604570 | 0.808328 | 3.269427e-50 | -8.615850e-47 |
| Msa0090090 | Msa0608980 | 0.829629 | 4.625132e-55 | -8.615850e-47 |
| Msa0090090 | Msa0613150 | 0.806358 | 8.552223e-50 | -8.615850e-47 |
| Msa0090090 | Msa0614380 | 0.810651 | 1.036587e-50 | -8.615850e-47 |
| Msa0090090 | Msa0619310 | 0.838834 | 2.271671e-57 | -8.615850e-47 |
| Msa0090090 | Msa0635270 | 0.816670 | 4.906411e-52 | -8.615850e-47 |
| Msa0090090 | Msa0662460 | 0.834768 | 2.476502e-56 | -8.615850e-47 |
| Msa0090090 | Msa0662580 | 0.838470 | 2.821709e-57 | -8.615850e-47 |
| Msa0090090 | Msa0671860 | 0.838968 | 2.097972e-57 | -8.615850e-47 |
| Msa0090090 | Msa0687150 | 0.801136 | 1.037953e-48 | -8.615850e-47 |
| Msa0090090 | Msa0696100 | 0.808878 | 2.494618e-50 | -8.615850e-47 |
| Msa0090090 | Msa0697590 | 0.814713 | 1.339458e-51 | -8.615850e-47 |
| Msa0090090 | Msa0704680 | 0.838570 | 2.659346e-57 | -8.615850e-47 |
| Msa0090090 | Msa0709140 | 0.846941 | 1.582906e-59 | -8.615850e-47 |
| Msa0090090 | Msa0717860 | 0.806665 | 7.366672e-50 | -8.615850e-47 |
| Msa0090090 | Msa0740630 | 0.833658 | 4.698921e-56 | -8.615850e-47 |
| Msa0090090 | Msa0742430 | 0.847098 | 1.433567e-59 | -8.615850e-47 |
| Msa0090090 | Msa0753590 | -0.809154 | 2.177448e-50 | -8.615850e-47 |
| Msa0090090 | Msa0753930 | 0.819810 | 9.549560e-53 | -8.615850e-47 |
| Msa0090090 | Msa0758520 | 0.803744 | 3.011856e-49 | -8.615850e-47 |
| Msa0090090 | Msa0758570 | 0.801648 | 8.153503e-49 | -8.615850e-47 |
| Msa0090090 | Msa0758850 | 0.852722 | 3.830553e-61 | -8.615850e-47 |
| Msa0090090 | Msa0788660 | 0.813813 | 2.116475e-51 | -8.615850e-47 |
| Msa0090090 | Msa0790920 | 0.843685 | 1.203467e-58 | -8.615850e-47 |
| Msa0090090 | Msa0791740 | 0.813833 | 2.094743e-51 | -8.615850e-47 |
| Msa0090090 | Msa0804870 | 0.803088 | 4.118132e-49 | -8.615850e-47 |
| Msa0090090 | Msa0807020 | 0.808391 | 3.169020e-50 | -8.615850e-47 |
| Msa0090090 | Msa0820880 | 0.834726 | 2.536898e-56 | -8.615850e-47 |
| Msa0090090 | Msa0832950 | 0.820011 | 8.591639e-53 | -8.615850e-47 |
| Msa0090090 | Msa0833270 | 0.806471 | 8.095127e-50 | -8.615850e-47 |
| Msa0090090 | Msa0838090 | 0.862929 | 3.576391e-64 | -8.615850e-47 |
| Msa0090090 | Msa0838870 | 0.811149 | 8.089775e-51 | -8.615850e-47 |
| Msa0090090 | Msa0859040 | 0.844596 | 6.854186e-59 | -8.615850e-47 |
| Msa0090090 | Msa0862620 | 0.838395 | 2.950485e-57 | -8.615850e-47 |
| Msa0090090 | Msa0882480 | -0.811161 | 8.040129e-51 | -8.615850e-47 |
| Msa0090090 | Msa0966580 | 0.818420 | 1.979089e-52 | -8.615850e-47 |
| Msa0090090 | Msa1011250 | 0.844394 | 7.766940e-59 | -8.615850e-47 |
| Msa0090090 | Msa1027910 | 0.833505 | 5.130305e-56 | -8.615850e-47 |
| Msa0090090 | Msa1030210 | 0.820319 | 7.305633e-53 | -8.615850e-47 |
| Msa0090090 | Msa1030240 | 0.833416 | 5.402259e-56 | -8.615850e-47 |
| Msa0090090 | Msa1031460 | 0.834543 | 2.820902e-56 | -8.615850e-47 |
| Msa0090090 | Msa1043120 | 0.832426 | 9.515823e-56 | -8.615850e-47 |
| Msa0090090 | Msa1069250 | 0.802622 | 5.141754e-49 | -8.615850e-47 |
| Msa0090090 | Msa1069890 | 0.812584 | 3.938809e-51 | -8.615850e-47 |
| Msa0090090 | Msa1070540 | 0.814667 | 1.370636e-51 | -8.615850e-47 |
| Msa0090090 | Msa1084640 | 0.816030 | 6.821770e-52 | -8.615850e-47 |
| Msa0090090 | Msa1084890 | 0.848171 | 7.265469e-60 | -8.615850e-47 |
| Msa0090090 | Msa1089190 | 0.836853 | 7.336528e-57 | -8.615850e-47 |
| Msa0090090 | Msa1092310 | 0.816524 | 5.290216e-52 | -8.615850e-47 |
| Msa0090090 | Msa1101240 | 0.819739 | 9.912750e-53 | -8.615850e-47 |
| Msa0090090 | Msa1109670 | 0.818259 | 2.152291e-52 | -8.615850e-47 |
| Msa0090090 | Msa1114670 | 0.820346 | 7.199630e-53 | -8.615850e-47 |
| Msa0090090 | Msa1116840 | 0.840160 | 1.027581e-57 | -8.615850e-47 |
| Msa0090090 | Msa1120580 | 0.818005 | 2.456085e-52 | -8.615850e-47 |
| Msa0090090 | Msa1131790 | 0.832844 | 7.495345e-56 | -8.615850e-47 |
| Msa0090090 | Msa1132980 | 0.816714 | 4.796470e-52 | -8.615850e-47 |
| Msa0090090 | Msa1136760 | 0.856682 | 2.727629e-62 | -8.615850e-47 |
| Msa0090090 | Msa1157110 | 0.823603 | 1.267233e-53 | -8.615850e-47 |
| Msa0090090 | Msa1159170 | 0.822061 | 2.896754e-53 | -8.615850e-47 |
| Msa0090090 | Msa1171450 | 0.819259 | 1.275940e-52 | -8.615850e-47 |
| Msa0090090 | Msa1208990 | 0.839438 | 1.584971e-57 | -8.615850e-47 |
| Msa0090090 | Msa1246790 | 0.834562 | 2.789506e-56 | -8.615850e-47 |
| Msa0090090 | Msa1256060 | 0.853195 | 2.805338e-61 | -8.615850e-47 |
| Msa0090090 | Msa1276960 | 0.800548 | 1.368908e-48 | -8.615850e-47 |
| Msa0090090 | Msa1280960 | 0.810958 | 8.898080e-51 | -8.615850e-47 |
| Msa0090090 | Msa1281690 | 0.823952 | 1.049675e-53 | -8.615850e-47 |
| Msa0090090 | Msa1296240 | 0.826546 | 2.556245e-54 | -8.615850e-47 |
| Msa0090090 | Msa1307530 | 0.846414 | 2.205119e-59 | -8.615850e-47 |
| Msa0090090 | Msa1362850 | 0.826945 | 2.053459e-54 | -8.615850e-47 |
| Msa0090090 | Msa1364080 | 0.825304 | 5.042743e-54 | -8.615850e-47 |
| Msa0090090 | Msa1379020 | 0.800705 | 1.271294e-48 | -8.615850e-47 |
| Msa0090090 | Msa1398140 | 0.850183 | 2.002044e-60 | -8.615850e-47 |
| Msa0090090 | Msa1398900 | 0.829787 | 4.232902e-55 | -8.615850e-47 |
| Msa0090090 | Msa1400340 | 0.811056 | 8.474013e-51 | -8.615850e-47 |
| Msa0090090 | Msa1407880 | 0.804673 | 1.929354e-49 | -8.615850e-47 |
| Msa0090090 | Msa1416730 | 0.806090 | 9.738185e-50 | -8.615850e-47 |
| Msa0090090 | Msa1420940 | 0.811709 | 6.111440e-51 | -8.615850e-47 |
| Msa0090090 | Msa1433410 | 0.804784 | 1.829264e-49 | -8.615850e-47 |
| Msa0090090 | Msa1439650 | 0.829096 | 6.232498e-55 | -8.615850e-47 |
| Msa0090090 | Msa1447870 | 0.849545 | 3.019819e-60 | -8.615850e-47 |
| Msa0090090 | Msa1447880 | 0.855995 | 4.338238e-62 | -8.615850e-47 |
| Msa0090090 | Msa1451990 | 0.839279 | 1.742701e-57 | -8.615850e-47 |
| Msa0090090 | Msa1455200 | 0.835062 | 2.087406e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090090 | MtrunA17_Chr1g0209741 | 92.708 | 384 | 14 | 3 | 1 | 374 | 1 | 380 | 0.0 | 723 |
| Msa0090090 | MtrunA17_Chr5g0423541 | 66.582 | 395 | 108 | 5 | 1 | 373 | 1 | 393 | 0.0 | 548 |
| Msa0090090 | MtrunA17_Chr7g0215451 | 57.704 | 331 | 129 | 2 | 49 | 369 | 7 | 336 | 1.90e-139 | 400 |
| Msa0090090 | MtrunA17_Chr6g0457581 | 55.891 | 331 | 135 | 2 | 49 | 369 | 6 | 335 | 2.34e-137 | 395 |
| Msa0090090 | MtrunA17_Chr6g0460121 | 60.140 | 286 | 113 | 1 | 84 | 369 | 14 | 298 | 1.95e-128 | 371 |
| Msa0090090 | MtrunA17_Chr6g0484431 | 52.000 | 275 | 120 | 3 | 47 | 310 | 8 | 281 | 2.33e-102 | 303 |
| Msa0090090 | MtrunA17_Chr1g0195501 | 45.745 | 282 | 152 | 1 | 90 | 371 | 11 | 291 | 1.81e-87 | 267 |
| Msa0090090 | MtrunA17_Chr7g0269371 | 43.571 | 280 | 156 | 1 | 90 | 369 | 11 | 288 | 6.11e-86 | 264 |
| Msa0090090 | MtrunA17_Chr1g0212901 | 43.571 | 280 | 157 | 1 | 93 | 372 | 16 | 294 | 6.23e-83 | 255 |
| Msa0090090 | MtrunA17_Chr4g0047891 | 40.288 | 278 | 166 | 0 | 95 | 372 | 47 | 324 | 1.08e-71 | 226 |
| Msa0090090 | MtrunA17_Chr1g0199771 | 33.770 | 305 | 189 | 5 | 66 | 368 | 19 | 312 | 6.33e-56 | 186 |
| Msa0090090 | MtrunA17_Chr4g0071671 | 37.050 | 278 | 173 | 2 | 98 | 374 | 41 | 317 | 2.46e-55 | 184 |
| Msa0090090 | MtrunA17_Chr3g0140391 | 36.071 | 280 | 165 | 8 | 95 | 371 | 103 | 371 | 1.14e-44 | 158 |
| Msa0090090 | MtrunA17_Chr6g0479331 | 35.915 | 284 | 172 | 8 | 89 | 371 | 116 | 390 | 6.80e-38 | 140 |
| Msa0090090 | MtrunA17_Chr1g0209761 | 83.099 | 71 | 12 | 0 | 304 | 374 | 12 | 82 | 1.42e-33 | 119 |
| Msa0090090 | MtrunA17_Chr6g0484421 | 53.968 | 63 | 29 | 0 | 311 | 373 | 1 | 63 | 1.39e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090090 | AT1G77420.1 | 63.265 | 343 | 116 | 1 | 39 | 371 | 36 | 378 | 1.37e-160 | 456 |
| Msa0090090 | AT5G16120.3 | 56.839 | 329 | 131 | 2 | 51 | 369 | 10 | 337 | 1.39e-135 | 391 |
| Msa0090090 | AT5G16120.1 | 56.839 | 329 | 131 | 2 | 51 | 369 | 10 | 337 | 1.39e-135 | 391 |
| Msa0090090 | AT5G16120.2 | 56.839 | 329 | 131 | 2 | 51 | 369 | 28 | 355 | 4.25e-135 | 390 |
| Msa0090090 | AT5G16120.4 | 56.839 | 329 | 131 | 2 | 51 | 369 | 42 | 369 | 4.47e-135 | 391 |
| Msa0090090 | AT3G62860.1 | 41.489 | 282 | 163 | 1 | 90 | 371 | 12 | 291 | 1.60e-83 | 258 |
| Msa0090090 | AT2G39420.1 | 44.326 | 282 | 156 | 1 | 92 | 373 | 16 | 296 | 3.58e-83 | 256 |
| Msa0090090 | AT2G47630.1 | 42.908 | 282 | 161 | 0 | 90 | 371 | 12 | 293 | 4.07e-83 | 257 |
| Msa0090090 | AT2G39410.2 | 45.714 | 280 | 151 | 1 | 92 | 371 | 16 | 294 | 7.63e-83 | 255 |
| Msa0090090 | AT1G11090.1 | 44.245 | 278 | 155 | 0 | 95 | 372 | 38 | 315 | 1.26e-79 | 247 |
| Msa0090090 | AT3G55180.1 | 43.310 | 284 | 161 | 0 | 90 | 373 | 8 | 291 | 1.10e-78 | 244 |
| Msa0090090 | AT2G39400.1 | 42.349 | 281 | 161 | 1 | 93 | 373 | 11 | 290 | 8.12e-76 | 237 |
| Msa0090090 | AT3G62860.2 | 41.870 | 246 | 143 | 0 | 126 | 371 | 3 | 248 | 1.53e-72 | 228 |
| Msa0090090 | AT2G47630.2 | 43.460 | 237 | 134 | 0 | 137 | 373 | 14 | 250 | 7.96e-69 | 219 |
| Msa0090090 | AT2G47630.3 | 43.460 | 237 | 134 | 0 | 137 | 373 | 34 | 270 | 1.65e-68 | 219 |
| Msa0090090 | AT3G55190.1 | 38.516 | 283 | 172 | 2 | 92 | 373 | 16 | 297 | 1.01e-65 | 211 |
| Msa0090090 | AT5G14980.1 | 34.982 | 283 | 181 | 3 | 90 | 371 | 35 | 315 | 4.29e-59 | 194 |
| Msa0090090 | AT5G19290.1 | 34.982 | 283 | 182 | 2 | 93 | 374 | 38 | 319 | 2.97e-56 | 187 |
| Msa0090090 | AT1G52760.1 | 34.828 | 290 | 181 | 3 | 92 | 374 | 38 | 326 | 2.63e-54 | 182 |
| Msa0090090 | AT2G39400.2 | 40.094 | 212 | 126 | 1 | 93 | 304 | 11 | 221 | 6.02e-50 | 168 |
| Msa0090090 | AT5G11650.1 | 36.691 | 278 | 160 | 8 | 95 | 368 | 110 | 375 | 2.99e-42 | 152 |
| Msa0090090 | AT1G73480.1 | 34.122 | 296 | 171 | 10 | 83 | 372 | 186 | 463 | 6.63e-40 | 147 |
| Msa0090090 | AT1G18360.1 | 34.520 | 281 | 171 | 6 | 95 | 372 | 112 | 382 | 1.47e-38 | 142 |
| Msa0090090 | AT5G11650.2 | 34.171 | 199 | 114 | 7 | 95 | 287 | 110 | 297 | 2.22e-21 | 93.6 |
| Msa0090090 | AT2G39410.1 | 43.182 | 88 | 49 | 1 | 92 | 179 | 16 | 102 | 3.35e-20 | 85.9 |
Find 95 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCATTATTGATACTTCA+TGG | 0.274482 | 1_2:+71947984 | Msa0090090:CDS |
| TATTCTTCTTTGGCTCATCT+TGG | 0.291232 | 1_2:-71948287 | None:intergenic |
| AGGAGGTTACCATGGCATTT+TGG | 0.302834 | 1_2:+71948094 | Msa0090090:CDS |
| AACTTGTAGTAGTAGGAAAT+TGG | 0.315204 | 1_2:+71948484 | Msa0090090:three_prime_UTR |
| TTGCATTCACTCTCAGTCTC+AGG | 0.316151 | 1_2:-71945558 | None:intergenic |
| ACTTGCACTTTCTTCTTTGA+AGG | 0.335129 | 1_2:+71946387 | Msa0090090:CDS |
| TTGATTGGAACGCCATGTTC+TGG | 0.338027 | 1_2:-71946330 | None:intergenic |
| ACCATGAGATGATGTCATTA+TGG | 0.339733 | 1_2:-71948148 | None:intergenic |
| GCAATGGATTTCCCAGGTTT+CGG | 0.351323 | 1_2:+71946521 | Msa0090090:CDS |
| GCTCCATGAAGTATCAATAA+TGG | 0.356305 | 1_2:-71947987 | None:intergenic |
| ATTTATATTCGGACAGTCAA+TGG | 0.361185 | 1_2:+71947032 | Msa0090090:CDS |
| TTAGTTTAACTTGTAGTAGT+AGG | 0.364902 | 1_2:+71948477 | Msa0090090:three_prime_UTR |
| TAAAGAAACTGGCTCACTAA+TGG | 0.370262 | 1_2:-71948029 | None:intergenic |
| AGAACCCGGCAAGAGAAAAT+TGG | 0.374826 | 1_2:+71947656 | Msa0090090:CDS |
| ATGCTTTCTCATAAAGAAAC+TGG | 0.376112 | 1_2:-71948040 | None:intergenic |
| GATTTGCCGCAATTTATATT+CGG | 0.378150 | 1_2:+71947021 | Msa0090090:CDS |
| TGCTCTTAAAGCTCATTTGA+AGG | 0.379148 | 1_2:+71947065 | Msa0090090:CDS |
| TCATCTCATGGTTAGACATT+AGG | 0.392634 | 1_2:+71948159 | Msa0090090:CDS |
| ATTCTTCTTTGGCTCATCTT+GGG | 0.395376 | 1_2:-71948286 | None:intergenic |
| ATGACAACGACACTCCGATT+TGG | 0.395939 | 1_2:+71945469 | Msa0090090:CDS |
| TGATATTGGATTATGGTGTA+AGG | 0.399930 | 1_2:-71945515 | None:intergenic |
| ACAGAAGAAATTCTTTCATC+AGG | 0.403357 | 1_2:-71948125 | None:intergenic |
| ACAAGTTAAACTAACAGAAA+TGG | 0.404712 | 1_2:-71948468 | None:intergenic |
| ATGACTCCGTCCCAATCATT+TGG | 0.412702 | 1_2:-71947090 | None:intergenic |
| ATTTGAAGGAACCAAATGAT+TGG | 0.414265 | 1_2:+71947079 | Msa0090090:CDS |
| TTCAAAGTTCTTAAGTCACT+TGG | 0.425978 | 1_2:-71948320 | None:intergenic |
| GATTATGGTGTAAGGGTAAA+GGG | 0.427866 | 1_2:-71945507 | None:intergenic |
| TGAAAGGAATTCAAGGGGAT+TGG | 0.438456 | 1_2:+71946284 | Msa0090090:CDS |
| GGTGTAAGGGTAAAGGGAAA+TGG | 0.442389 | 1_2:-71945501 | None:intergenic |
| ACTTGATCATATCTTATTCA+AGG | 0.446112 | 1_2:+71945699 | Msa0090090:CDS |
| AGAAAGTGGTGACTGATTAT+CGG | 0.447228 | 1_2:-71948345 | None:intergenic |
| TGCATTCACTCTCAGTCTCA+GGG | 0.454337 | 1_2:-71945557 | None:intergenic |
| AACACCTTCAAGATTGTAGT+TGG | 0.461576 | 1_2:-71947561 | None:intergenic |
| GAACATGGCGTTCCAATCAA+AGG | 0.465267 | 1_2:+71946333 | Msa0090090:CDS |
| AGCTCCATGGTTACTGAGCT+TGG | 0.465639 | 1_2:-71945442 | None:intergenic |
| AACATGGCGTTCCAATCAAA+GGG | 0.467021 | 1_2:+71946334 | Msa0090090:CDS |
| CCTTCAGATAAACCGAAACC+TGG | 0.470797 | 1_2:-71946533 | None:intergenic |
| TTTGAAGGAACCAAATGATT+GGG | 0.476356 | 1_2:+71947080 | Msa0090090:CDS |
| CCAGGTTTCGGTTTATCTGA+AGG | 0.476945 | 1_2:+71946533 | Msa0090090:CDS |
| CCTTGTAGCTCCAATGTGTA+AGG | 0.478506 | 1_2:+71947113 | Msa0090090:CDS |
| GATCAAACACGATTAAGAAC+TGG | 0.479472 | 1_2:+71947801 | Msa0090090:CDS |
| GGATTATGGTGTAAGGGTAA+AGG | 0.480388 | 1_2:-71945508 | None:intergenic |
| CTCATCGCTGATACCTTCAA+TGG | 0.484364 | 1_2:-71945593 | None:intergenic |
| ATCAAGGTTAAGAGAAGCTA+TGG | 0.486484 | 1_2:-71945623 | None:intergenic |
| ACCGCCAACTACAATCTTGA+AGG | 0.491450 | 1_2:+71947557 | Msa0090090:CDS |
| TGCGGCAAATCCCTCACCTC+TGG | 0.492405 | 1_2:-71947009 | None:intergenic |
| AGTTCAGATAGATCCTTGTA+TGG | 0.502102 | 1_2:-71947624 | None:intergenic |
| TTGGTTATCAGTGGTATGAA+AGG | 0.504463 | 1_2:+71946268 | Msa0090090:intron |
| TTTATATTCGGACAGTCAAT+GGG | 0.504492 | 1_2:+71947033 | Msa0090090:CDS |
| GGTTTATCTGAAGGATTACA+TGG | 0.507433 | 1_2:+71946542 | Msa0090090:CDS |
| GATATTGGATTATGGTGTAA+GGG | 0.515166 | 1_2:-71945514 | None:intergenic |
| GTTTATGCAATGGATTTCCC+AGG | 0.516962 | 1_2:+71946515 | Msa0090090:CDS |
| TACGAGAAGGTGCATGATCA+AGG | 0.526915 | 1_2:-71945639 | None:intergenic |
| ATCTACATACTTCTAGAAAG+TGG | 0.527281 | 1_2:-71948359 | None:intergenic |
| TGGATTTGGTGTTTATGCAA+TGG | 0.528835 | 1_2:+71946505 | Msa0090090:CDS |
| CCTTACACATTGGAGCTACA+AGG | 0.538468 | 1_2:-71947113 | None:intergenic |
| TCAAAGTTCTTAAGTCACTT+GGG | 0.541694 | 1_2:-71948319 | None:intergenic |
| AGTGGTATGAAAGGAATTCA+AGG | 0.543776 | 1_2:+71946277 | Msa0090090:intron |
| TCGACTAAATCATCAAAACT+TGG | 0.545949 | 1_2:-71946572 | None:intergenic |
| ACTTCATGGAGCAGAAGATA+AGG | 0.548587 | 1_2:+71947998 | Msa0090090:CDS |
| GACAGCTAGACCAGAGGTGA+GGG | 0.549583 | 1_2:+71946999 | Msa0090090:intron |
| GGCAAAACTATTTCCATACA+AGG | 0.558367 | 1_2:+71947611 | Msa0090090:CDS |
| TTGATTGCCAAGATATCAGA+AGG | 0.558672 | 1_2:+71947528 | Msa0090090:intron |
| ACCTTCAAGATTGTAGTTGG+CGG | 0.559875 | 1_2:-71947558 | None:intergenic |
| ATAATTGTTCAGGTATTGCA+AGG | 0.560443 | 1_2:+71946468 | Msa0090090:intron |
| TCCATGGTTACTGAGCTTGG+TGG | 0.563373 | 1_2:-71945439 | None:intergenic |
| AAGACACTAAAGATCTATGA+AGG | 0.565411 | 1_2:+71948074 | Msa0090090:CDS |
| AACACGATTAAGAACTGGCA+TGG | 0.566445 | 1_2:+71947806 | Msa0090090:CDS |
| TCAAGATATTGAGTCACAGT+TGG | 0.570097 | 1_2:+71947845 | Msa0090090:CDS |
| GTGGTATGAAAGGAATTCAA+GGG | 0.572692 | 1_2:+71946278 | Msa0090090:intron |
| TATTGAGTCACAGTTGGAGA+AGG | 0.587825 | 1_2:+71947851 | Msa0090090:CDS |
| ATCTATGAAGGAGGTTACCA+TGG | 0.587933 | 1_2:+71948086 | Msa0090090:CDS |
| CTTGTCTAAAATGATGCCAA+AGG | 0.592063 | 1_2:+71947590 | Msa0090090:CDS |
| TCCATAATGACATCATCTCA+TGG | 0.596292 | 1_2:+71948147 | Msa0090090:CDS |
| AAAAGCTGGATGCCAGAACA+TGG | 0.599820 | 1_2:+71946318 | Msa0090090:CDS |
| TTTGTTAGTTTGTTAGAGTG+TGG | 0.611501 | 1_2:+71948436 | Msa0090090:three_prime_UTR |
| CTGTGACTCAATATCTTGAG+TGG | 0.612313 | 1_2:-71947841 | None:intergenic |
| AAGGAACCAAATGATTGGGA+CGG | 0.614530 | 1_2:+71947084 | Msa0090090:CDS |
| GACTGTCCGAATATAAATTG+CGG | 0.618570 | 1_2:-71947027 | None:intergenic |
| TCCACCAAGCTCAGTAACCA+TGG | 0.619324 | 1_2:+71945438 | Msa0090090:exon |
| CTTCAGATAAACCGAAACCT+GGG | 0.619450 | 1_2:-71946532 | None:intergenic |
| CGTTGTCATAGATAGCTCCA+TGG | 0.621711 | 1_2:-71945455 | None:intergenic |
| ATATTCGGACAGTCAATGGG+TGG | 0.631708 | 1_2:+71947036 | Msa0090090:CDS |
| GGTGCTCAAGATAATTGTGG+TGG | 0.638846 | 1_2:+71948180 | Msa0090090:exon |
| TGACAGCTAGACCAGAGGTG+AGG | 0.639641 | 1_2:+71946998 | Msa0090090:intron |
| AATGGACATACCTTACACAT+TGG | 0.639810 | 1_2:-71947123 | None:intergenic |
| TTAGGTGCTCAAGATAATTG+TGG | 0.643784 | 1_2:+71948177 | Msa0090090:exon |
| GTTCACCTTCCAAAATGCCA+TGG | 0.645530 | 1_2:-71948103 | None:intergenic |
| TGTCGAACATGTCTACGAGA+AGG | 0.657476 | 1_2:-71945652 | None:intergenic |
| TTGCTGATGCACATGAGTGA+AGG | 0.663071 | 1_2:-71945677 | None:intergenic |
| TGGTATGAAAGGAATTCAAG+GGG | 0.670152 | 1_2:+71946279 | Msa0090090:CDS |
| TACATTGACAGCTAGACCAG+AGG | 0.671347 | 1_2:+71946993 | Msa0090090:intron |
| ACACTAAAGATCTATGAAGG+AGG | 0.678648 | 1_2:+71948077 | Msa0090090:CDS |
| TGGAGTTTGAACAGAGCATG+TGG | 0.689301 | 1_2:-71945419 | None:intergenic |
| ACATGGCGTTCCAATCAAAG+GGG | 0.730927 | 1_2:+71946335 | Msa0090090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGAAGATTAGTTTAAAA+AGG | + | chr1_2:71946738-71946757 | Msa0090090:intron | 15.0% |
| !! | AAAAAATATAGCTATAGTAT+AGG | - | chr1_2:71947927-71947946 | None:intergenic | 15.0% |
| !!! | TTTCATTCTGAATTTTATTA+TGG | + | chr1_2:71948213-71948232 | Msa0090090:three_prime_UTR | 15.0% |
| !!! | TTTTATTTTTATAGCAGTTT+AGG | + | chr1_2:71948549-71948568 | Msa0090090:three_prime_UTR | 15.0% |
| !!! | AGTTTTTTGATATTGGATTA+TGG | - | chr1_2:71945525-71945544 | None:intergenic | 20.0% |
| !!! | TTTGTAGAGTTTTTTGATAT+TGG | - | chr1_2:71945532-71945551 | None:intergenic | 20.0% |
| !!! | TGATGTCTATACATTAATTT+TGG | + | chr1_2:71946249-71946268 | Msa0090090:intron | 20.0% |
| !!! | ATTGATTTGAATAATTGTTC+AGG | + | chr1_2:71946458-71946477 | Msa0090090:intron | 20.0% |
| !! | GAATTCCATACAAAAATTAA+AGG | + | chr1_2:71946605-71946624 | Msa0090090:CDS | 20.0% |
| !!! | TCATACCTTTAATTTTTGTA+TGG | - | chr1_2:71946613-71946632 | None:intergenic | 20.0% |
| !! | TAATCCAAGATCAATTTATA+TGG | + | chr1_2:71947417-71947436 | Msa0090090:intron | 20.0% |
| !! | AATCCAAGATCAATTTATAT+GGG | + | chr1_2:71947418-71947437 | Msa0090090:intron | 20.0% |
| !! | TCATTGTCATATATAATTTC+AGG | + | chr1_2:71947956-71947975 | Msa0090090:intron | 20.0% |
| ! | ACTTGATCATATCTTATTCA+AGG | + | chr1_2:71945699-71945718 | Msa0090090:CDS | 25.0% |
| !! | TATGAAATGAAAAAAGTGTG+AGG | - | chr1_2:71945744-71945763 | None:intergenic | 25.0% |
| !! | TTTCTTTGTTTGTGTTTCAT+TGG | + | chr1_2:71945791-71945810 | Msa0090090:intron | 25.0% |
| ! | TTCAAATAAGTCGATCTAAA+GGG | - | chr1_2:71945994-71946013 | None:intergenic | 25.0% |
| ! | AGAACTTATGAAAACATCTT+AGG | - | chr1_2:71946138-71946157 | None:intergenic | 25.0% |
| ! | AAGCACTTATTAGACTATTT+GGG | - | chr1_2:71946161-71946180 | None:intergenic | 25.0% |
| ! | TAAGCACTTATTAGACTATT+TGG | - | chr1_2:71946162-71946181 | None:intergenic | 25.0% |
| ! | ATAACACATTTCACAGTTTA+GGG | - | chr1_2:71946221-71946240 | None:intergenic | 25.0% |
| !!! | ACATTAATTTTGGTTATCAG+TGG | + | chr1_2:71946259-71946278 | Msa0090090:intron | 25.0% |
| ! | ATCACGATTGCTAAAATAAA+AGG | - | chr1_2:71946636-71946655 | None:intergenic | 25.0% |
| ! | ATGATGTGTAAAAAACTACA+AGG | + | chr1_2:71946705-71946724 | Msa0090090:intron | 25.0% |
| !!! | GAAGATTAGTTTAAAAAGGA+TGG | + | chr1_2:71946742-71946761 | Msa0090090:intron | 25.0% |
| ! | CTTTGCTTAAAAATCAATGA+TGG | - | chr1_2:71946793-71946812 | None:intergenic | 25.0% |
| !!! | CATCATTGATTTTTAAGCAA+AGG | + | chr1_2:71946791-71946810 | Msa0090090:intron | 25.0% |
| ! | TGTAATTTCTTTGACATCTA+AGG | + | chr1_2:71947229-71947248 | Msa0090090:intron | 25.0% |
| !! | GATTATTTCCAATATCGATT+TGG | - | chr1_2:71947402-71947421 | None:intergenic | 25.0% |
| ! | TTTCCCATATAAATTGATCT+TGG | - | chr1_2:71947424-71947443 | None:intergenic | 25.0% |
| ! | GATCAATTTATATGGGAAAA+TGG | + | chr1_2:71947425-71947444 | Msa0090090:intron | 25.0% |
| !! | ACTATCTATCATTTGTTGAA+TGG | + | chr1_2:71947449-71947468 | Msa0090090:intron | 25.0% |
| !!! | TTGGTTGGTAATTTAATTTG+TGG | + | chr1_2:71947675-71947694 | Msa0090090:intron | 25.0% |
| ! | GAACAAATGCATAGTTAATT+TGG | - | chr1_2:71947742-71947761 | None:intergenic | 25.0% |
| !! | GCATTTGTTCTTTCTTTTAT+AGG | + | chr1_2:71947752-71947771 | Msa0090090:intron | 25.0% |
| !!! | GCTTAAGTTTTATTCTTCTT+TGG | - | chr1_2:71948300-71948319 | None:intergenic | 25.0% |
| ! | ACAAGTTAAACTAACAGAAA+TGG | - | chr1_2:71948471-71948490 | None:intergenic | 25.0% |
| !!! | TTAGTTTAACTTGTAGTAGT+AGG | + | chr1_2:71948477-71948496 | Msa0090090:three_prime_UTR | 25.0% |
| !!! | AATGGTTTTGTGATCCAAAT+CGG | - | chr1_2:71945486-71945505 | None:intergenic | 30.0% |
| GATATTGGATTATGGTGTAA+GGG | - | chr1_2:71945517-71945536 | None:intergenic | 30.0% | |
| TGATATTGGATTATGGTGTA+AGG | - | chr1_2:71945518-71945537 | None:intergenic | 30.0% | |
| AAGAAAAAGTCAACCATTGA+AGG | + | chr1_2:71945580-71945599 | Msa0090090:CDS | 30.0% | |
| TTGTTTGTGTTTCATTGGAA+TGG | + | chr1_2:71945796-71945815 | Msa0090090:intron | 30.0% | |
| GTTCAAATAAGTCGATCTAA+AGG | - | chr1_2:71945995-71946014 | None:intergenic | 30.0% | |
| CATAACACATTTCACAGTTT+AGG | - | chr1_2:71946222-71946241 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTGTCATGGATA+TGG | + | chr1_2:71946360-71946379 | Msa0090090:CDS | 30.0% |
| CTAGAGAGTTATCAAATTTG+AGG | + | chr1_2:71946428-71946447 | Msa0090090:intron | 30.0% | |
| AGAGTTATCAAATTTGAGGA+TGG | + | chr1_2:71946432-71946451 | Msa0090090:intron | 30.0% | |
| ! | ATAATTGTTCAGGTATTGCA+AGG | + | chr1_2:71946468-71946487 | Msa0090090:intron | 30.0% |
| TCGACTAAATCATCAAAACT+TGG | - | chr1_2:71946575-71946594 | None:intergenic | 30.0% | |
| !! | GATTAGTTTAAAAAGGATGG+AGG | + | chr1_2:71946745-71946764 | Msa0090090:intron | 30.0% |
| GATTTGCCGCAATTTATATT+CGG | + | chr1_2:71947021-71947040 | Msa0090090:CDS | 30.0% | |
| ATTTATATTCGGACAGTCAA+TGG | + | chr1_2:71947032-71947051 | Msa0090090:CDS | 30.0% | |
| TTTATATTCGGACAGTCAAT+GGG | + | chr1_2:71947033-71947052 | Msa0090090:CDS | 30.0% | |
| ATTTGAAGGAACCAAATGAT+TGG | + | chr1_2:71947079-71947098 | Msa0090090:CDS | 30.0% | |
| TTTGAAGGAACCAAATGATT+GGG | + | chr1_2:71947080-71947099 | Msa0090090:CDS | 30.0% | |
| TGTCAAAGAAATTACAAGAG+TGG | - | chr1_2:71947225-71947244 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAAGAATAC+TGG | - | chr1_2:71947294-71947313 | None:intergenic | 30.0% | |
| ! | CAAGTTTGAGATTCAATACT+TGG | + | chr1_2:71947305-71947324 | Msa0090090:intron | 30.0% |
| TCAAACAAGAACAACAAATC+AGG | - | chr1_2:71947512-71947531 | None:intergenic | 30.0% | |
| !! | TATGGAAATAGTTTTGCCTT+TGG | - | chr1_2:71947609-71947628 | None:intergenic | 30.0% |
| ATGCTTTCTCATAAAGAAAC+TGG | - | chr1_2:71948043-71948062 | None:intergenic | 30.0% | |
| AAGACACTAAAGATCTATGA+AGG | + | chr1_2:71948074-71948093 | Msa0090090:CDS | 30.0% | |
| ACAGAAGAAATTCTTTCATC+AGG | - | chr1_2:71948128-71948147 | None:intergenic | 30.0% | |
| TCAAAGTTCTTAAGTCACTT+GGG | - | chr1_2:71948322-71948341 | None:intergenic | 30.0% | |
| TTCAAAGTTCTTAAGTCACT+TGG | - | chr1_2:71948323-71948342 | None:intergenic | 30.0% | |
| ! | ATCTACATACTTCTAGAAAG+TGG | - | chr1_2:71948362-71948381 | None:intergenic | 30.0% |
| !! | TTTGTTAGTTTGTTAGAGTG+TGG | + | chr1_2:71948436-71948455 | Msa0090090:three_prime_UTR | 30.0% |
| AACTTGTAGTAGTAGGAAAT+TGG | + | chr1_2:71948484-71948503 | Msa0090090:three_prime_UTR | 30.0% | |
| GATTATGGTGTAAGGGTAAA+GGG | - | chr1_2:71945510-71945529 | None:intergenic | 35.0% | |
| ATCAAGGTTAAGAGAAGCTA+TGG | - | chr1_2:71945626-71945645 | None:intergenic | 35.0% | |
| TTGGTTATCAGTGGTATGAA+AGG | + | chr1_2:71946268-71946287 | Msa0090090:intron | 35.0% | |
| AGTGGTATGAAAGGAATTCA+AGG | + | chr1_2:71946277-71946296 | Msa0090090:intron | 35.0% | |
| GTGGTATGAAAGGAATTCAA+GGG | + | chr1_2:71946278-71946297 | Msa0090090:intron | 35.0% | |
| TGGTATGAAAGGAATTCAAG+GGG | + | chr1_2:71946279-71946298 | Msa0090090:CDS | 35.0% | |
| AAAAACAAAGCCCCTTTGAT+TGG | - | chr1_2:71946348-71946367 | None:intergenic | 35.0% | |
| ACTTGCACTTTCTTCTTTGA+AGG | + | chr1_2:71946387-71946406 | Msa0090090:CDS | 35.0% | |
| ! | ATTTGATAACTCTCTAGCTC+TGG | - | chr1_2:71946425-71946444 | None:intergenic | 35.0% |
| !!! | ATTTTAGCTGCTTCTGGATT+TGG | + | chr1_2:71946491-71946510 | Msa0090090:CDS | 35.0% |
| !! | TGGATTTGGTGTTTATGCAA+TGG | + | chr1_2:71946505-71946524 | Msa0090090:CDS | 35.0% |
| GGTTTATCTGAAGGATTACA+TGG | + | chr1_2:71946542-71946561 | Msa0090090:CDS | 35.0% | |
| ATAGATTGCAACAACGATCA+CGG | - | chr1_2:71946663-71946682 | None:intergenic | 35.0% | |
| GTCAATGTAAATGCATCGAA+AGG | - | chr1_2:71946982-71947001 | None:intergenic | 35.0% | |
| GACTGTCCGAATATAAATTG+CGG | - | chr1_2:71947030-71947049 | None:intergenic | 35.0% | |
| TGCTCTTAAAGCTCATTTGA+AGG | + | chr1_2:71947065-71947084 | Msa0090090:CDS | 35.0% | |
| AATGGACATACCTTACACAT+TGG | - | chr1_2:71947126-71947145 | None:intergenic | 35.0% | |
| ! | TGCAAAAGAATACTGGTTGA+GGG | - | chr1_2:71947287-71947306 | None:intergenic | 35.0% |
| ! | TTGCAAAAGAATACTGGTTG+AGG | - | chr1_2:71947288-71947307 | None:intergenic | 35.0% |
| ! | GCTTTTGTCCAAATCGATAT+TGG | + | chr1_2:71947391-71947410 | Msa0090090:intron | 35.0% |
| AGTTGTATTAGCACATCTGT+TGG | + | chr1_2:71947480-71947499 | Msa0090090:intron | 35.0% | |
| TTGATTGCCAAGATATCAGA+AGG | + | chr1_2:71947528-71947547 | Msa0090090:intron | 35.0% | |
| TAACATGCCTTCTGATATCT+TGG | - | chr1_2:71947538-71947557 | None:intergenic | 35.0% | |
| AACACCTTCAAGATTGTAGT+TGG | - | chr1_2:71947564-71947583 | None:intergenic | 35.0% | |
| ! | CTTGTCTAAAATGATGCCAA+AGG | + | chr1_2:71947590-71947609 | Msa0090090:CDS | 35.0% |
| GGCAAAACTATTTCCATACA+AGG | + | chr1_2:71947611-71947630 | Msa0090090:CDS | 35.0% | |
| AGTTCAGATAGATCCTTGTA+TGG | - | chr1_2:71947627-71947646 | None:intergenic | 35.0% | |
| ! | TGGTAGAGTGCAAATTTTCA+AGG | - | chr1_2:71947722-71947741 | None:intergenic | 35.0% |
| GATCAAACACGATTAAGAAC+TGG | + | chr1_2:71947801-71947820 | Msa0090090:CDS | 35.0% | |
| TCAAGATATTGAGTCACAGT+TGG | + | chr1_2:71947845-71947864 | Msa0090090:CDS | 35.0% | |
| TTTGCTCACTTTCTGTTACT+TGG | + | chr1_2:71947887-71947906 | Msa0090090:intron | 35.0% | |
| GCTCCATTATTGATACTTCA+TGG | + | chr1_2:71947984-71948003 | Msa0090090:CDS | 35.0% | |
| ! | GCTCCATGAAGTATCAATAA+TGG | - | chr1_2:71947990-71948009 | None:intergenic | 35.0% |
| ! | TAAAGAAACTGGCTCACTAA+TGG | - | chr1_2:71948032-71948051 | None:intergenic | 35.0% |
| ACACTAAAGATCTATGAAGG+AGG | + | chr1_2:71948077-71948096 | Msa0090090:CDS | 35.0% | |
| TCCATAATGACATCATCTCA+TGG | + | chr1_2:71948147-71948166 | Msa0090090:CDS | 35.0% | |
| ACCATGAGATGATGTCATTA+TGG | - | chr1_2:71948151-71948170 | None:intergenic | 35.0% | |
| TCATCTCATGGTTAGACATT+AGG | + | chr1_2:71948159-71948178 | Msa0090090:CDS | 35.0% | |
| TTAGGTGCTCAAGATAATTG+TGG | + | chr1_2:71948177-71948196 | Msa0090090:exon | 35.0% | |
| ! | ATTCTTCTTTGGCTCATCTT+GGG | - | chr1_2:71948289-71948308 | None:intergenic | 35.0% |
| ! | TATTCTTCTTTGGCTCATCT+TGG | - | chr1_2:71948290-71948309 | None:intergenic | 35.0% |
| AGAAAGTGGTGACTGATTAT+CGG | - | chr1_2:71948348-71948367 | None:intergenic | 35.0% | |
| GGATTATGGTGTAAGGGTAA+AGG | - | chr1_2:71945511-71945530 | None:intergenic | 40.0% | |
| TATAATAGACTGCACCTGCT+GGG | + | chr1_2:71945826-71945845 | Msa0090090:intron | 40.0% | |
| ! | CGATGATGATGAGTATAGCA+AGG | + | chr1_2:71945903-71945922 | Msa0090090:intron | 40.0% |
| GTCGCACAAATGTTTATGTC+AGG | - | chr1_2:71946024-71946043 | None:intergenic | 40.0% | |
| ! | TTCACAGTTTAGGGCATGTT+TGG | - | chr1_2:71946212-71946231 | None:intergenic | 40.0% |
| TGAAAGGAATTCAAGGGGAT+TGG | + | chr1_2:71946284-71946303 | Msa0090090:CDS | 40.0% | |
| ! | TGGAGATTTTCTGCAAAAGC+TGG | + | chr1_2:71946304-71946323 | Msa0090090:CDS | 40.0% |
| AACATGGCGTTCCAATCAAA+GGG | + | chr1_2:71946334-71946353 | Msa0090090:CDS | 40.0% | |
| ! | GTTTATGCAATGGATTTCCC+AGG | + | chr1_2:71946515-71946534 | Msa0090090:CDS | 40.0% |
| CTTCAGATAAACCGAAACCT+GGG | - | chr1_2:71946535-71946554 | None:intergenic | 40.0% | |
| AAGGAACCAAATGATTGGGA+CGG | + | chr1_2:71947084-71947103 | Msa0090090:CDS | 40.0% | |
| TCAAATGCAACACAGAGGAA+TGG | - | chr1_2:71947144-71947163 | None:intergenic | 40.0% | |
| CAACATCAAATGCAACACAG+AGG | - | chr1_2:71947149-71947168 | None:intergenic | 40.0% | |
| ACCTTCAAGATTGTAGTTGG+CGG | - | chr1_2:71947561-71947580 | None:intergenic | 40.0% | |
| !! | GAACTTATTTTCCGAGAACC+CGG | + | chr1_2:71947642-71947661 | Msa0090090:CDS | 40.0% |
| ! | ACCAACCAATTTTCTCTTGC+CGG | - | chr1_2:71947664-71947683 | None:intergenic | 40.0% |
| AACACGATTAAGAACTGGCA+TGG | + | chr1_2:71947806-71947825 | Msa0090090:CDS | 40.0% | |
| CTGTGACTCAATATCTTGAG+TGG | - | chr1_2:71947844-71947863 | None:intergenic | 40.0% | |
| TATTGAGTCACAGTTGGAGA+AGG | + | chr1_2:71947851-71947870 | Msa0090090:CDS | 40.0% | |
| ACTTCATGGAGCAGAAGATA+AGG | + | chr1_2:71947998-71948017 | Msa0090090:CDS | 40.0% | |
| ATCTATGAAGGAGGTTACCA+TGG | + | chr1_2:71948086-71948105 | Msa0090090:CDS | 40.0% | |
| TGGAGTTTGAACAGAGCATG+TGG | - | chr1_2:71945422-71945441 | None:intergenic | 45.0% | |
| CGTTGTCATAGATAGCTCCA+TGG | - | chr1_2:71945458-71945477 | None:intergenic | 45.0% | |
| ATGACAACGACACTCCGATT+TGG | + | chr1_2:71945469-71945488 | Msa0090090:CDS | 45.0% | |
| GGTGTAAGGGTAAAGGGAAA+TGG | - | chr1_2:71945504-71945523 | None:intergenic | 45.0% | |
| TGCATTCACTCTCAGTCTCA+GGG | - | chr1_2:71945560-71945579 | None:intergenic | 45.0% | |
| TTGCATTCACTCTCAGTCTC+AGG | - | chr1_2:71945561-71945580 | None:intergenic | 45.0% | |
| CTCATCGCTGATACCTTCAA+TGG | - | chr1_2:71945596-71945615 | None:intergenic | 45.0% | |
| ! | TACGAGAAGGTGCATGATCA+AGG | - | chr1_2:71945642-71945661 | None:intergenic | 45.0% |
| TGTCGAACATGTCTACGAGA+AGG | - | chr1_2:71945655-71945674 | None:intergenic | 45.0% | |
| TTGCTGATGCACATGAGTGA+AGG | - | chr1_2:71945680-71945699 | None:intergenic | 45.0% | |
| CTATAATAGACTGCACCTGC+TGG | + | chr1_2:71945825-71945844 | Msa0090090:intron | 45.0% | |
| TCTTGAGTTATGATCCCAGC+AGG | - | chr1_2:71945843-71945862 | None:intergenic | 45.0% | |
| TGAGTATAGCAAGGCATGCT+TGG | + | chr1_2:71945912-71945931 | Msa0090090:intron | 45.0% | |
| AAAAGCTGGATGCCAGAACA+TGG | + | chr1_2:71946318-71946337 | Msa0090090:CDS | 45.0% | |
| TTGATTGGAACGCCATGTTC+TGG | - | chr1_2:71946333-71946352 | None:intergenic | 45.0% | |
| GAACATGGCGTTCCAATCAA+AGG | + | chr1_2:71946333-71946352 | Msa0090090:CDS | 45.0% | |
| ACATGGCGTTCCAATCAAAG+GGG | + | chr1_2:71946335-71946354 | Msa0090090:CDS | 45.0% | |
| !!! | GGGGCTTTGTTTTTCTGTCA+TGG | + | chr1_2:71946354-71946373 | Msa0090090:CDS | 45.0% |
| !!! | GCAAGGATTTTAGCTGCTTC+TGG | + | chr1_2:71946485-71946504 | Msa0090090:CDS | 45.0% |
| ! | GCAATGGATTTCCCAGGTTT+CGG | + | chr1_2:71946521-71946540 | Msa0090090:CDS | 45.0% |
| CCTTCAGATAAACCGAAACC+TGG | - | chr1_2:71946536-71946555 | None:intergenic | 45.0% | |
| CCAGGTTTCGGTTTATCTGA+AGG | + | chr1_2:71946533-71946552 | Msa0090090:CDS | 45.0% | |
| TACATTGACAGCTAGACCAG+AGG | + | chr1_2:71946993-71947012 | Msa0090090:intron | 45.0% | |
| ATATTCGGACAGTCAATGGG+TGG | + | chr1_2:71947036-71947055 | Msa0090090:CDS | 45.0% | |
| ATGACTCCGTCCCAATCATT+TGG | - | chr1_2:71947093-71947112 | None:intergenic | 45.0% | |
| CCTTACACATTGGAGCTACA+AGG | - | chr1_2:71947116-71947135 | None:intergenic | 45.0% | |
| CCTTGTAGCTCCAATGTGTA+AGG | + | chr1_2:71947113-71947132 | Msa0090090:CDS | 45.0% | |
| ACCGCCAACTACAATCTTGA+AGG | + | chr1_2:71947557-71947576 | Msa0090090:CDS | 45.0% | |
| ! | ATTTTCTCTTGCCGGGTTCT+CGG | - | chr1_2:71947656-71947675 | None:intergenic | 45.0% |
| AGAACCCGGCAAGAGAAAAT+TGG | + | chr1_2:71947656-71947675 | Msa0090090:CDS | 45.0% | |
| ! | CCAACCAATTTTCTCTTGCC+GGG | - | chr1_2:71947663-71947682 | None:intergenic | 45.0% |
| ! | AGGAGGTTACCATGGCATTT+TGG | + | chr1_2:71948094-71948113 | Msa0090090:CDS | 45.0% |
| ! | GGTTACCATGGCATTTTGGA+AGG | + | chr1_2:71948098-71948117 | Msa0090090:CDS | 45.0% |
| GTTCACCTTCCAAAATGCCA+TGG | - | chr1_2:71948106-71948125 | None:intergenic | 45.0% | |
| GGTGCTCAAGATAATTGTGG+TGG | + | chr1_2:71948180-71948199 | Msa0090090:exon | 45.0% | |
| TCCACCAAGCTCAGTAACCA+TGG | + | chr1_2:71945438-71945457 | Msa0090090:exon | 50.0% | |
| TCCATGGTTACTGAGCTTGG+TGG | - | chr1_2:71945442-71945461 | None:intergenic | 50.0% | |
| AGCTCCATGGTTACTGAGCT+TGG | - | chr1_2:71945445-71945464 | None:intergenic | 50.0% | |
| CCCGGCAAGAGAAAATTGGT+TGG | + | chr1_2:71947660-71947679 | Msa0090090:intron | 50.0% | |
| TGACAGCTAGACCAGAGGTG+AGG | + | chr1_2:71946998-71947017 | Msa0090090:intron | 55.0% | |
| GACAGCTAGACCAGAGGTGA+GGG | + | chr1_2:71946999-71947018 | Msa0090090:intron | 55.0% | |
| TGCGGCAAATCCCTCACCTC+TGG | - | chr1_2:71947012-71947031 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71945386 | 71948572 | 71945386 | ID=Msa0090090;Name=Msa0090090 |
| chr1_2 | mRNA | 71945386 | 71948572 | 71945386 | ID=Msa0090090-mRNA-1;Parent=Msa0090090;Name=Msa0090090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=71|0.83|1|1|1|1|7|379|374 |
| chr1_2 | exon | 71945386 | 71945720 | 71945386 | ID=Msa0090090-mRNA-1:exon:24906;Parent=Msa0090090-mRNA-1 |
| chr1_2 | exon | 71946279 | 71946408 | 71946279 | ID=Msa0090090-mRNA-1:exon:24907;Parent=Msa0090090-mRNA-1 |
| chr1_2 | exon | 71946480 | 71946626 | 71946480 | ID=Msa0090090-mRNA-1:exon:24908;Parent=Msa0090090-mRNA-1 |
| chr1_2 | exon | 71947004 | 71947134 | 71947004 | ID=Msa0090090-mRNA-1:exon:24909;Parent=Msa0090090-mRNA-1 |
| chr1_2 | exon | 71947540 | 71947677 | 71947540 | ID=Msa0090090-mRNA-1:exon:24910;Parent=Msa0090090-mRNA-1 |
| chr1_2 | exon | 71947774 | 71947872 | 71947774 | ID=Msa0090090-mRNA-1:exon:24911;Parent=Msa0090090-mRNA-1 |
| chr1_2 | exon | 71947978 | 71948572 | 71947978 | ID=Msa0090090-mRNA-1:exon:24912;Parent=Msa0090090-mRNA-1 |
| chr1_2 | five_prime_UTR | 71945386 | 71945456 | 71945386 | ID=Msa0090090-mRNA-1:five_prime_utr;Parent=Msa0090090-mRNA-1 |
| chr1_2 | CDS | 71945457 | 71945720 | 71945457 | ID=Msa0090090-mRNA-1:cds;Parent=Msa0090090-mRNA-1 |
| chr1_2 | CDS | 71946279 | 71946408 | 71946279 | ID=Msa0090090-mRNA-1:cds;Parent=Msa0090090-mRNA-1 |
| chr1_2 | CDS | 71946480 | 71946626 | 71946480 | ID=Msa0090090-mRNA-1:cds;Parent=Msa0090090-mRNA-1 |
| chr1_2 | CDS | 71947004 | 71947134 | 71947004 | ID=Msa0090090-mRNA-1:cds;Parent=Msa0090090-mRNA-1 |
| chr1_2 | CDS | 71947540 | 71947677 | 71947540 | ID=Msa0090090-mRNA-1:cds;Parent=Msa0090090-mRNA-1 |
| chr1_2 | CDS | 71947774 | 71947872 | 71947774 | ID=Msa0090090-mRNA-1:cds;Parent=Msa0090090-mRNA-1 |
| chr1_2 | CDS | 71947978 | 71948193 | 71947978 | ID=Msa0090090-mRNA-1:cds;Parent=Msa0090090-mRNA-1 |
| chr1_2 | three_prime_UTR | 71948194 | 71948572 | 71948194 | ID=Msa0090090-mRNA-1:three_prime_utr;Parent=Msa0090090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
