Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043740 | XP_039685961.1 | 92.708 | 384 | 14 | 3 | 1 | 374 | 1 | 380 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043740 | sp|Q9C942|CSE_ARATH | 34.828 | 290 | 181 | 3 | 92 | 374 | 38 | 326 | 2.59e-53 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009640 | Msa0043740 | 0.806299 | 8.800498e-50 | -8.615850e-47 |
| Msa0022470 | Msa0043740 | 0.811797 | 5.848386e-51 | -8.615850e-47 |
| Msa0043740 | Msa0051960 | 0.823791 | 1.144973e-53 | -8.615850e-47 |
| Msa0043740 | Msa0090090 | 0.980080 | 2.118028e-149 | -8.615850e-47 |
| Msa0043740 | Msa0094710 | 0.828651 | 7.987554e-55 | -8.615850e-47 |
| Msa0043740 | Msa0095940 | 0.809959 | 1.461765e-50 | -8.615850e-47 |
| Msa0043740 | Msa0101960 | 0.826767 | 2.263818e-54 | -8.615850e-47 |
| Msa0043740 | Msa0118010 | 0.817644 | 2.963594e-52 | -8.615850e-47 |
| Msa0043740 | Msa0136270 | 0.814539 | 1.462996e-51 | -8.615850e-47 |
| Msa0043740 | Msa0137560 | 0.976634 | 3.347172e-142 | -8.615850e-47 |
| Msa0043740 | Msa0139680 | 0.842297 | 2.818593e-58 | -8.615850e-47 |
| Msa0043740 | Msa0161560 | 0.804093 | 2.548281e-49 | -8.615850e-47 |
| Msa0043740 | Msa0167570 | -0.802318 | 5.938954e-49 | -8.615850e-47 |
| Msa0043740 | Msa0170770 | 0.826637 | 2.431957e-54 | -8.615850e-47 |
| Msa0043740 | Msa0182560 | 0.964519 | 1.983613e-123 | -8.615850e-47 |
| Msa0043740 | Msa0185100 | 0.803754 | 2.996934e-49 | -8.615850e-47 |
| Msa0043740 | Msa0189600 | 0.816662 | 4.925997e-52 | -8.615850e-47 |
| Msa0043740 | Msa0193190 | 0.823962 | 1.044441e-53 | -8.615850e-47 |
| Msa0043740 | Msa0244890 | 0.820060 | 8.373031e-53 | -8.615850e-47 |
| Msa0043740 | Msa0257900 | 0.820822 | 5.598564e-53 | -8.615850e-47 |
| Msa0043740 | Msa0257910 | 0.818710 | 1.700573e-52 | -8.615850e-47 |
| Msa0043740 | Msa0271540 | 0.818071 | 2.373739e-52 | -8.615850e-47 |
| Msa0043740 | Msa0273070 | 0.809782 | 1.595861e-50 | -8.615850e-47 |
| Msa0043740 | Msa0283490 | 0.816913 | 4.327241e-52 | -8.615850e-47 |
| Msa0043740 | Msa0296900 | 0.839837 | 1.247785e-57 | -8.615850e-47 |
| Msa0043740 | Msa0296910 | 0.840082 | 1.077070e-57 | -8.615850e-47 |
| Msa0043740 | Msa0307420 | 0.829729 | 4.372446e-55 | -8.615850e-47 |
| Msa0043740 | Msa0319260 | 0.803288 | 3.743786e-49 | -8.615850e-47 |
| Msa0043740 | Msa0319270 | 0.815974 | 7.022195e-52 | -8.615850e-47 |
| Msa0043740 | Msa0331970 | 0.807892 | 4.047372e-50 | -8.615850e-47 |
| Msa0043740 | Msa0335070 | 0.849540 | 3.027866e-60 | -8.615850e-47 |
| Msa0043740 | Msa0335080 | 0.861272 | 1.152464e-63 | -8.615850e-47 |
| Msa0043740 | Msa0355550 | 0.807607 | 4.654231e-50 | -8.615850e-47 |
| Msa0043740 | Msa0383900 | 0.815961 | 7.068663e-52 | -8.615850e-47 |
| Msa0043740 | Msa0387040 | 0.839267 | 1.755249e-57 | -8.615850e-47 |
| Msa0043740 | Msa0408340 | 0.822241 | 2.631432e-53 | -8.615850e-47 |
| Msa0043740 | Msa0415640 | 0.831047 | 2.082409e-55 | -8.615850e-47 |
| Msa0043740 | Msa0434300 | 0.809817 | 1.568755e-50 | -8.615850e-47 |
| Msa0043740 | Msa0434400 | 0.820990 | 5.121087e-53 | -8.615850e-47 |
| Msa0043740 | Msa0460600 | 0.807411 | 5.122741e-50 | -8.615850e-47 |
| Msa0043740 | Msa0480930 | 0.822575 | 2.201665e-53 | -8.615850e-47 |
| Msa0043740 | Msa0488580 | 0.800037 | 1.739424e-48 | -8.615850e-47 |
| Msa0043740 | Msa0501410 | 0.827212 | 1.772685e-54 | -8.615850e-47 |
| Msa0043740 | Msa0517270 | 0.826926 | 2.074520e-54 | -8.615850e-47 |
| Msa0043740 | Msa0534270 | 0.823601 | 1.268409e-53 | -8.615850e-47 |
| Msa0043740 | Msa0536540 | 0.832406 | 9.627670e-56 | -8.615850e-47 |
| Msa0043740 | Msa0558570 | 0.822074 | 2.877334e-53 | -8.615850e-47 |
| Msa0043740 | Msa0567480 | 0.800043 | 1.734543e-48 | -8.615850e-47 |
| Msa0043740 | Msa0577660 | 0.800619 | 1.323687e-48 | -8.615850e-47 |
| Msa0043740 | Msa0588710 | 0.825100 | 5.635065e-54 | -8.615850e-47 |
| Msa0043740 | Msa0592650 | 0.848639 | 5.390608e-60 | -8.615850e-47 |
| Msa0043740 | Msa0592660 | 0.839745 | 1.318492e-57 | -8.615850e-47 |
| Msa0043740 | Msa0604570 | 0.804939 | 1.697754e-49 | -8.615850e-47 |
| Msa0043740 | Msa0608980 | 0.817037 | 4.059526e-52 | -8.615850e-47 |
| Msa0043740 | Msa0619310 | 0.837281 | 5.703253e-57 | -8.615850e-47 |
| Msa0043740 | Msa0635270 | 0.800138 | 1.658570e-48 | -8.615850e-47 |
| Msa0043740 | Msa0662460 | 0.827068 | 1.918648e-54 | -8.615850e-47 |
| Msa0043740 | Msa0662580 | 0.815992 | 6.958329e-52 | -8.615850e-47 |
| Msa0043740 | Msa0671860 | 0.817061 | 4.009367e-52 | -8.615850e-47 |
| Msa0043740 | Msa0704680 | 0.826278 | 2.961457e-54 | -8.615850e-47 |
| Msa0043740 | Msa0709140 | 0.838508 | 2.758616e-57 | -8.615850e-47 |
| Msa0043740 | Msa0740630 | 0.832369 | 9.835108e-56 | -8.615850e-47 |
| Msa0043740 | Msa0742430 | 0.835210 | 1.915516e-56 | -8.615850e-47 |
| Msa0043740 | Msa0753590 | -0.808704 | 2.717929e-50 | -8.615850e-47 |
| Msa0043740 | Msa0753930 | 0.804552 | 2.045527e-49 | -8.615850e-47 |
| Msa0043740 | Msa0758850 | 0.846988 | 1.536750e-59 | -8.615850e-47 |
| Msa0043740 | Msa0788660 | 0.802860 | 4.592102e-49 | -8.615850e-47 |
| Msa0043740 | Msa0790920 | 0.833643 | 4.739849e-56 | -8.615850e-47 |
| Msa0043740 | Msa0791740 | 0.812957 | 3.264398e-51 | -8.615850e-47 |
| Msa0043740 | Msa0820880 | 0.833023 | 6.767714e-56 | -8.615850e-47 |
| Msa0043740 | Msa0832950 | 0.809183 | 2.145626e-50 | -8.615850e-47 |
| Msa0043740 | Msa0833270 | 0.808019 | 3.803309e-50 | -8.615850e-47 |
| Msa0043740 | Msa0838090 | 0.852637 | 4.051998e-61 | -8.615850e-47 |
| Msa0043740 | Msa0838870 | 0.802090 | 6.615178e-49 | -8.615850e-47 |
| Msa0043740 | Msa0859040 | 0.844314 | 8.160808e-59 | -8.615850e-47 |
| Msa0043740 | Msa0862620 | 0.830576 | 2.716863e-55 | -8.615850e-47 |
| Msa0043740 | Msa0966580 | 0.810172 | 1.315217e-50 | -8.615850e-47 |
| Msa0043740 | Msa1011250 | 0.829218 | 5.821028e-55 | -8.615850e-47 |
| Msa0043740 | Msa1027910 | 0.831160 | 1.954045e-55 | -8.615850e-47 |
| Msa0043740 | Msa1030210 | 0.822477 | 2.319364e-53 | -8.615850e-47 |
| Msa0043740 | Msa1030240 | 0.830756 | 2.454574e-55 | -8.615850e-47 |
| Msa0043740 | Msa1031460 | 0.814586 | 1.428525e-51 | -8.615850e-47 |
| Msa0043740 | Msa1034450 | 0.800202 | 1.609438e-48 | -8.615850e-47 |
| Msa0043740 | Msa1043120 | 0.821558 | 3.787268e-53 | -8.615850e-47 |
| Msa0043740 | Msa1069250 | 0.801434 | 9.020052e-49 | -8.615850e-47 |
| Msa0043740 | Msa1069890 | 0.800836 | 1.195718e-48 | -8.615850e-47 |
| Msa0043740 | Msa1074200 | 0.801833 | 7.470374e-49 | -8.615850e-47 |
| Msa0043740 | Msa1084640 | 0.804112 | 2.526148e-49 | -8.615850e-47 |
| Msa0043740 | Msa1084890 | 0.844294 | 8.263673e-59 | -8.615850e-47 |
| Msa0043740 | Msa1089190 | 0.818142 | 2.287107e-52 | -8.615850e-47 |
| Msa0043740 | Msa1092310 | 0.815427 | 9.297199e-52 | -8.615850e-47 |
| Msa0043740 | Msa1109670 | 0.814947 | 1.188347e-51 | -8.615850e-47 |
| Msa0043740 | Msa1114670 | 0.811288 | 7.547746e-51 | -8.615850e-47 |
| Msa0043740 | Msa1116840 | 0.836025 | 1.191918e-56 | -8.615850e-47 |
| Msa0043740 | Msa1120580 | 0.819848 | 9.363848e-53 | -8.615850e-47 |
| Msa0043740 | Msa1131790 | 0.828096 | 1.087020e-54 | -8.615850e-47 |
| Msa0043740 | Msa1132980 | 0.802562 | 5.289039e-49 | -8.615850e-47 |
| Msa0043740 | Msa1136760 | 0.843840 | 1.093719e-58 | -8.615850e-47 |
| Msa0043740 | Msa1137210 | 0.802214 | 6.239620e-49 | -8.615850e-47 |
| Msa0043740 | Msa1157110 | 0.820498 | 6.645368e-53 | -8.615850e-47 |
| Msa0043740 | Msa1159170 | 0.817088 | 3.952239e-52 | -8.615850e-47 |
| Msa0043740 | Msa1171450 | 0.810500 | 1.117399e-50 | -8.615850e-47 |
| Msa0043740 | Msa1208990 | 0.823864 | 1.100938e-53 | -8.615850e-47 |
| Msa0043740 | Msa1246790 | 0.826863 | 2.147630e-54 | -8.615850e-47 |
| Msa0043740 | Msa1256060 | 0.836156 | 1.103598e-56 | -8.615850e-47 |
| Msa0043740 | Msa1280960 | 0.800198 | 1.612773e-48 | -8.615850e-47 |
| Msa0043740 | Msa1281690 | 0.820848 | 5.520886e-53 | -8.615850e-47 |
| Msa0043740 | Msa1296240 | 0.818506 | 1.892013e-52 | -8.615850e-47 |
| Msa0043740 | Msa1307530 | 0.838586 | 2.633094e-57 | -8.615850e-47 |
| Msa0043740 | Msa1362850 | 0.816887 | 4.386228e-52 | -8.615850e-47 |
| Msa0043740 | Msa1364080 | 0.806749 | 7.070996e-50 | -8.615850e-47 |
| Msa0043740 | Msa1398140 | 0.836389 | 9.631883e-57 | -8.615850e-47 |
| Msa0043740 | Msa1398900 | 0.800432 | 1.445138e-48 | -8.615850e-47 |
| Msa0043740 | Msa1404050 | 0.802446 | 5.589827e-49 | -8.615850e-47 |
| Msa0043740 | Msa1439650 | 0.822460 | 2.341310e-53 | -8.615850e-47 |
| Msa0043740 | Msa1447870 | 0.847250 | 1.302455e-59 | -8.615850e-47 |
| Msa0043740 | Msa1447880 | 0.840497 | 8.390067e-58 | -8.615850e-47 |
| Msa0043740 | Msa1451990 | 0.829837 | 4.116237e-55 | -8.615850e-47 |
| Msa0043740 | Msa1455200 | 0.819865 | 9.278619e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043740 | MtrunA17_Chr1g0209741 | 92.708 | 384 | 14 | 3 | 1 | 374 | 1 | 380 | 0.0 | 723 |
| Msa0043740 | MtrunA17_Chr5g0423541 | 66.582 | 395 | 108 | 5 | 1 | 373 | 1 | 393 | 0.0 | 548 |
| Msa0043740 | MtrunA17_Chr7g0215451 | 57.704 | 331 | 129 | 2 | 49 | 369 | 7 | 336 | 1.90e-139 | 400 |
| Msa0043740 | MtrunA17_Chr6g0457581 | 55.891 | 331 | 135 | 2 | 49 | 369 | 6 | 335 | 2.34e-137 | 395 |
| Msa0043740 | MtrunA17_Chr6g0460121 | 60.140 | 286 | 113 | 1 | 84 | 369 | 14 | 298 | 1.95e-128 | 371 |
| Msa0043740 | MtrunA17_Chr6g0484431 | 52.000 | 275 | 120 | 3 | 47 | 310 | 8 | 281 | 2.33e-102 | 303 |
| Msa0043740 | MtrunA17_Chr1g0195501 | 45.745 | 282 | 152 | 1 | 90 | 371 | 11 | 291 | 1.81e-87 | 267 |
| Msa0043740 | MtrunA17_Chr7g0269371 | 43.571 | 280 | 156 | 1 | 90 | 369 | 11 | 288 | 6.11e-86 | 264 |
| Msa0043740 | MtrunA17_Chr1g0212901 | 43.571 | 280 | 157 | 1 | 93 | 372 | 16 | 294 | 6.23e-83 | 255 |
| Msa0043740 | MtrunA17_Chr4g0047891 | 40.288 | 278 | 166 | 0 | 95 | 372 | 47 | 324 | 1.08e-71 | 226 |
| Msa0043740 | MtrunA17_Chr1g0199771 | 33.770 | 305 | 189 | 5 | 66 | 368 | 19 | 312 | 6.33e-56 | 186 |
| Msa0043740 | MtrunA17_Chr4g0071671 | 37.050 | 278 | 173 | 2 | 98 | 374 | 41 | 317 | 2.46e-55 | 184 |
| Msa0043740 | MtrunA17_Chr3g0140391 | 36.071 | 280 | 165 | 8 | 95 | 371 | 103 | 371 | 1.14e-44 | 158 |
| Msa0043740 | MtrunA17_Chr6g0479331 | 35.915 | 284 | 172 | 8 | 89 | 371 | 116 | 390 | 6.80e-38 | 140 |
| Msa0043740 | MtrunA17_Chr1g0209761 | 83.099 | 71 | 12 | 0 | 304 | 374 | 12 | 82 | 1.42e-33 | 119 |
| Msa0043740 | MtrunA17_Chr6g0484421 | 53.968 | 63 | 29 | 0 | 311 | 373 | 1 | 63 | 1.39e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043740 | AT1G77420.1 | 63.265 | 343 | 116 | 1 | 39 | 371 | 36 | 378 | 1.37e-160 | 456 |
| Msa0043740 | AT5G16120.3 | 56.839 | 329 | 131 | 2 | 51 | 369 | 10 | 337 | 1.39e-135 | 391 |
| Msa0043740 | AT5G16120.1 | 56.839 | 329 | 131 | 2 | 51 | 369 | 10 | 337 | 1.39e-135 | 391 |
| Msa0043740 | AT5G16120.2 | 56.839 | 329 | 131 | 2 | 51 | 369 | 28 | 355 | 4.25e-135 | 390 |
| Msa0043740 | AT5G16120.4 | 56.839 | 329 | 131 | 2 | 51 | 369 | 42 | 369 | 4.47e-135 | 391 |
| Msa0043740 | AT3G62860.1 | 41.489 | 282 | 163 | 1 | 90 | 371 | 12 | 291 | 1.60e-83 | 258 |
| Msa0043740 | AT2G39420.1 | 44.326 | 282 | 156 | 1 | 92 | 373 | 16 | 296 | 3.58e-83 | 256 |
| Msa0043740 | AT2G47630.1 | 42.908 | 282 | 161 | 0 | 90 | 371 | 12 | 293 | 4.07e-83 | 257 |
| Msa0043740 | AT2G39410.2 | 45.714 | 280 | 151 | 1 | 92 | 371 | 16 | 294 | 7.63e-83 | 255 |
| Msa0043740 | AT1G11090.1 | 44.245 | 278 | 155 | 0 | 95 | 372 | 38 | 315 | 1.26e-79 | 247 |
| Msa0043740 | AT3G55180.1 | 43.310 | 284 | 161 | 0 | 90 | 373 | 8 | 291 | 1.10e-78 | 244 |
| Msa0043740 | AT2G39400.1 | 42.349 | 281 | 161 | 1 | 93 | 373 | 11 | 290 | 8.12e-76 | 237 |
| Msa0043740 | AT3G62860.2 | 41.870 | 246 | 143 | 0 | 126 | 371 | 3 | 248 | 1.53e-72 | 228 |
| Msa0043740 | AT2G47630.2 | 43.460 | 237 | 134 | 0 | 137 | 373 | 14 | 250 | 7.96e-69 | 219 |
| Msa0043740 | AT2G47630.3 | 43.460 | 237 | 134 | 0 | 137 | 373 | 34 | 270 | 1.65e-68 | 219 |
| Msa0043740 | AT3G55190.1 | 38.516 | 283 | 172 | 2 | 92 | 373 | 16 | 297 | 1.01e-65 | 211 |
| Msa0043740 | AT5G14980.1 | 34.982 | 283 | 181 | 3 | 90 | 371 | 35 | 315 | 4.29e-59 | 194 |
| Msa0043740 | AT5G19290.1 | 34.982 | 283 | 182 | 2 | 93 | 374 | 38 | 319 | 2.97e-56 | 187 |
| Msa0043740 | AT1G52760.1 | 34.828 | 290 | 181 | 3 | 92 | 374 | 38 | 326 | 2.63e-54 | 182 |
| Msa0043740 | AT2G39400.2 | 40.094 | 212 | 126 | 1 | 93 | 304 | 11 | 221 | 6.02e-50 | 168 |
| Msa0043740 | AT5G11650.1 | 36.691 | 278 | 160 | 8 | 95 | 368 | 110 | 375 | 2.99e-42 | 152 |
| Msa0043740 | AT1G73480.1 | 34.122 | 296 | 171 | 10 | 83 | 372 | 186 | 463 | 6.63e-40 | 147 |
| Msa0043740 | AT1G18360.1 | 34.520 | 281 | 171 | 6 | 95 | 372 | 112 | 382 | 1.47e-38 | 142 |
| Msa0043740 | AT5G11650.2 | 34.171 | 199 | 114 | 7 | 95 | 287 | 110 | 297 | 2.22e-21 | 93.6 |
| Msa0043740 | AT2G39410.1 | 43.182 | 88 | 49 | 1 | 92 | 179 | 16 | 102 | 3.35e-20 | 85.9 |
Find 95 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCATTATTGATACTTCA+TGG | 0.274482 | 1_1:-75133545 | Msa0043740:CDS |
| TATTCTTCTTTGGCTCATCT+TGG | 0.291232 | 1_1:+75133242 | None:intergenic |
| AGGAGGTTACCATGGCATTT+TGG | 0.302834 | 1_1:-75133435 | Msa0043740:CDS |
| AACTTGTAGTAGTAGGAAAT+TGG | 0.315204 | 1_1:-75133046 | Msa0043740:three_prime_UTR |
| TTGCATTCACTCTCAGTCTC+AGG | 0.316151 | 1_1:+75135976 | None:intergenic |
| ACTTGCACTTTCTTCTTTGA+AGG | 0.335129 | 1_1:-75135144 | Msa0043740:intron |
| TTGATTGGAACGCCATGTTC+TGG | 0.338027 | 1_1:+75135201 | None:intergenic |
| ACCATGAGATGATGTCATTA+TGG | 0.339733 | 1_1:+75133381 | None:intergenic |
| GCAATGGATTTCCCAGGTTT+CGG | 0.351323 | 1_1:-75135010 | Msa0043740:CDS |
| GCTCCATGAAGTATCAATAA+TGG | 0.356305 | 1_1:+75133542 | None:intergenic |
| ATTTATATTCGGACAGTCAA+TGG | 0.361185 | 1_1:-75134497 | Msa0043740:CDS |
| TTAGTTTAACTTGTAGTAGT+AGG | 0.364902 | 1_1:-75133053 | Msa0043740:three_prime_UTR |
| TAAAGAAACTGGCTCACTAA+TGG | 0.370262 | 1_1:+75133500 | None:intergenic |
| AGAACCCGGCAAGAGAAAAT+TGG | 0.374826 | 1_1:-75133873 | Msa0043740:intron |
| ATGCTTTCTCATAAAGAAAC+TGG | 0.376112 | 1_1:+75133489 | None:intergenic |
| GATTTGCCGCAATTTATATT+CGG | 0.378150 | 1_1:-75134508 | Msa0043740:CDS |
| TGCTCTTAAAGCTCATTTGA+AGG | 0.379148 | 1_1:-75134464 | Msa0043740:CDS |
| TCATCTCATGGTTAGACATT+AGG | 0.392634 | 1_1:-75133370 | Msa0043740:CDS |
| ATTCTTCTTTGGCTCATCTT+GGG | 0.395376 | 1_1:+75133243 | None:intergenic |
| ATGACAACGACACTCCGATT+TGG | 0.395939 | 1_1:-75136065 | Msa0043740:CDS |
| TGATATTGGATTATGGTGTA+AGG | 0.399930 | 1_1:+75136019 | None:intergenic |
| ACAGAAGAAATTCTTTCATC+AGG | 0.403357 | 1_1:+75133404 | None:intergenic |
| ACAAGTTAAACTAACAGAAA+TGG | 0.404712 | 1_1:+75133062 | None:intergenic |
| ATGACTCCGTCCCAATCATT+TGG | 0.412702 | 1_1:+75134439 | None:intergenic |
| ATTTGAAGGAACCAAATGAT+TGG | 0.414265 | 1_1:-75134450 | Msa0043740:CDS |
| TTCAAAGTTCTTAAGTCACT+TGG | 0.425978 | 1_1:+75133209 | None:intergenic |
| GATTATGGTGTAAGGGTAAA+GGG | 0.427866 | 1_1:+75136027 | None:intergenic |
| TGAAAGGAATTCAAGGGGAT+TGG | 0.438456 | 1_1:-75135247 | Msa0043740:CDS |
| GGTGTAAGGGTAAAGGGAAA+TGG | 0.442389 | 1_1:+75136033 | None:intergenic |
| ACTTGATCATATCTTATTCA+AGG | 0.446112 | 1_1:-75135835 | Msa0043740:intron |
| AGAAAGTGGTGACTGATTAT+CGG | 0.447228 | 1_1:+75133184 | None:intergenic |
| CTCATCACTGATACCTTCAA+TGG | 0.450967 | 1_1:+75135941 | None:intergenic |
| TGCATTCACTCTCAGTCTCA+GGG | 0.454337 | 1_1:+75135977 | None:intergenic |
| AACACCTTCAAGATTGTAGT+TGG | 0.461576 | 1_1:+75133968 | None:intergenic |
| GAACATGGCGTTCCAATCAA+AGG | 0.465267 | 1_1:-75135198 | Msa0043740:CDS |
| AGCTCCATGGTTACTGAGCT+TGG | 0.465639 | 1_1:+75136092 | None:intergenic |
| AACATGGCGTTCCAATCAAA+GGG | 0.467021 | 1_1:-75135197 | Msa0043740:CDS |
| CCTTCAGATAAACCGAAACC+TGG | 0.470797 | 1_1:+75134998 | None:intergenic |
| TTTGAAGGAACCAAATGATT+GGG | 0.476356 | 1_1:-75134449 | Msa0043740:CDS |
| CCAGGTTTCGGTTTATCTGA+AGG | 0.476945 | 1_1:-75134998 | Msa0043740:CDS |
| CCTTGTAGCTCCAATGTGTA+AGG | 0.478506 | 1_1:-75134416 | Msa0043740:intron |
| GATCAAACACGATTAAGAAC+TGG | 0.479472 | 1_1:-75133728 | Msa0043740:CDS |
| GGATTATGGTGTAAGGGTAA+AGG | 0.480388 | 1_1:+75136026 | None:intergenic |
| ATCAAGGTTAAGAGAAGCTA+TGG | 0.486484 | 1_1:+75135911 | None:intergenic |
| ACCGCCAACTACAATCTTGA+AGG | 0.491450 | 1_1:-75133972 | Msa0043740:CDS |
| TGCGGCAAATCCCTCACCTC+TGG | 0.492405 | 1_1:+75134520 | None:intergenic |
| AGTTCAGATAGATCCTTGTA+TGG | 0.502102 | 1_1:+75133905 | None:intergenic |
| TTGGTTATCAGTGGTATGAA+AGG | 0.504463 | 1_1:-75135263 | Msa0043740:intron |
| TTTATATTCGGACAGTCAAT+GGG | 0.504492 | 1_1:-75134496 | Msa0043740:CDS |
| GGTTTATCTGAAGGATTACA+TGG | 0.507433 | 1_1:-75134989 | Msa0043740:CDS |
| GATATTGGATTATGGTGTAA+GGG | 0.515166 | 1_1:+75136020 | None:intergenic |
| GTTTATGCAATGGATTTCCC+AGG | 0.516962 | 1_1:-75135016 | Msa0043740:CDS |
| TACGAGAAGGTGCATGATCA+AGG | 0.526915 | 1_1:+75135895 | None:intergenic |
| ATCTACATACTTCTAGAAAG+TGG | 0.527281 | 1_1:+75133170 | None:intergenic |
| TGGATTTGGTGTTTATGCAA+TGG | 0.528835 | 1_1:-75135026 | Msa0043740:CDS |
| CCTTACACATTGGAGCTACA+AGG | 0.538468 | 1_1:+75134416 | None:intergenic |
| TCAAAGTTCTTAAGTCACTT+GGG | 0.541694 | 1_1:+75133210 | None:intergenic |
| AGTGGTATGAAAGGAATTCA+AGG | 0.543776 | 1_1:-75135254 | Msa0043740:CDS |
| TCGACTAAATCATCAAAACT+TGG | 0.545949 | 1_1:+75134959 | None:intergenic |
| ACTTCATGGAGCAGAAGATA+AGG | 0.548587 | 1_1:-75133531 | Msa0043740:CDS |
| GACAGCTAGACCAGAGGTGA+GGG | 0.549583 | 1_1:-75134530 | Msa0043740:intron |
| GGCAAAACTATTTCCATACA+AGG | 0.558367 | 1_1:-75133918 | Msa0043740:CDS |
| TTGATTGCCAAGATATCAGA+AGG | 0.558672 | 1_1:-75134001 | Msa0043740:intron |
| ACCTTCAAGATTGTAGTTGG+CGG | 0.559875 | 1_1:+75133971 | None:intergenic |
| ATAATTGTTCAGGTATTGCA+AGG | 0.560443 | 1_1:-75135063 | Msa0043740:intron |
| TCCATGGTTACTGAGCTTGG+TGG | 0.563373 | 1_1:+75136095 | None:intergenic |
| AAGACACTAAAGATCTATGA+AGG | 0.565411 | 1_1:-75133455 | Msa0043740:CDS |
| AACACGATTAAGAACTGGCA+TGG | 0.566445 | 1_1:-75133723 | Msa0043740:CDS |
| TCAAGATATTGAGTCACAGT+TGG | 0.570097 | 1_1:-75133684 | Msa0043740:CDS |
| GTGGTATGAAAGGAATTCAA+GGG | 0.572692 | 1_1:-75135253 | Msa0043740:CDS |
| TATTGAGTCACAGTTGGAGA+AGG | 0.587825 | 1_1:-75133678 | Msa0043740:intron |
| ATCTATGAAGGAGGTTACCA+TGG | 0.587933 | 1_1:-75133443 | Msa0043740:CDS |
| CTTGTCTAAAATGATGCCAA+AGG | 0.592063 | 1_1:-75133939 | Msa0043740:CDS |
| TCCATAATGACATCATCTCA+TGG | 0.596292 | 1_1:-75133382 | Msa0043740:CDS |
| AAAAGCTGGATGCCAGAACA+TGG | 0.599820 | 1_1:-75135213 | Msa0043740:CDS |
| TTTGTTAGTTTGTTAGAGTG+TGG | 0.611501 | 1_1:-75133094 | Msa0043740:three_prime_UTR |
| CTGTGACTCAATATCTTGAG+TGG | 0.612313 | 1_1:+75133688 | None:intergenic |
| AAGGAACCAAATGATTGGGA+CGG | 0.614530 | 1_1:-75134445 | Msa0043740:CDS |
| GACTGTCCGAATATAAATTG+CGG | 0.618570 | 1_1:+75134502 | None:intergenic |
| TCCACCAAGCTCAGTAACCA+TGG | 0.619324 | 1_1:-75136096 | Msa0043740:exon |
| CTTCAGATAAACCGAAACCT+GGG | 0.619450 | 1_1:+75134999 | None:intergenic |
| CGTTGTCATAGATAGCTCCA+TGG | 0.621711 | 1_1:+75136079 | None:intergenic |
| ATATTCGGACAGTCAATGGG+TGG | 0.631708 | 1_1:-75134493 | Msa0043740:CDS |
| GGTGCTCAAGATAATTGTGG+TGG | 0.638846 | 1_1:-75133349 | Msa0043740:exon |
| TGACAGCTAGACCAGAGGTG+AGG | 0.639641 | 1_1:-75134531 | Msa0043740:intron |
| AATGGACATACCTTACACAT+TGG | 0.639810 | 1_1:+75134406 | None:intergenic |
| TTAGGTGCTCAAGATAATTG+TGG | 0.643784 | 1_1:-75133352 | Msa0043740:exon |
| GTTCACCTTCCAAAATGCCA+TGG | 0.645530 | 1_1:+75133426 | None:intergenic |
| TGTCGAACATGTCTACGAGA+AGG | 0.657476 | 1_1:+75135882 | None:intergenic |
| TTGCTGATGCACATGAGTGA+AGG | 0.663071 | 1_1:+75135857 | None:intergenic |
| TGGTATGAAAGGAATTCAAG+GGG | 0.670152 | 1_1:-75135252 | Msa0043740:CDS |
| TACATTGACAGCTAGACCAG+AGG | 0.671347 | 1_1:-75134536 | Msa0043740:intron |
| ACACTAAAGATCTATGAAGG+AGG | 0.678648 | 1_1:-75133452 | Msa0043740:CDS |
| TGGAGTTTGAACAGAGCATG+TGG | 0.689301 | 1_1:+75136115 | None:intergenic |
| ACATGGCGTTCCAATCAAAG+GGG | 0.730927 | 1_1:-75135196 | Msa0043740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGAAGATTAGTTTAAAA+AGG | - | chr1_1:75134334-75134353 | Msa0043740:intron | 15.0% |
| !! | AAAAAATATAGCTATAGTAT+AGG | + | chr1_1:75135525-75135544 | None:intergenic | 15.0% |
| !!! | TTTCATTCTGAATTTTATTA+TGG | - | chr1_1:75135811-75135830 | Msa0043740:intron | 15.0% |
| !!! | TTTTATTTTTATAGCAGTTT+AGG | - | chr1_1:75136146-75136165 | Msa0043740:five_prime_UTR | 15.0% |
| !!! | AGTTTTTTGATATTGGATTA+TGG | + | chr1_1:75133118-75133137 | None:intergenic | 20.0% |
| !!! | TTTGTAGAGTTTTTTGATAT+TGG | + | chr1_1:75133125-75133144 | None:intergenic | 20.0% |
| !!! | TGATGTCTATACATTAATTT+TGG | - | chr1_1:75133845-75133864 | Msa0043740:intron | 20.0% |
| !!! | ATTGATTTGAATAATTGTTC+AGG | - | chr1_1:75134054-75134073 | Msa0043740:intron | 20.0% |
| !! | GAATTCCATACAAAAATTAA+AGG | - | chr1_1:75134201-75134220 | Msa0043740:intron | 20.0% |
| !!! | TCATACCTTTAATTTTTGTA+TGG | + | chr1_1:75134209-75134228 | None:intergenic | 20.0% |
| !! | TAATCCAAGATCAATTTATA+TGG | - | chr1_1:75135015-75135034 | Msa0043740:CDS | 20.0% |
| !! | AATCCAAGATCAATTTATAT+GGG | - | chr1_1:75135016-75135035 | Msa0043740:CDS | 20.0% |
| !! | TCATTGTCATATATAATTTC+AGG | - | chr1_1:75135554-75135573 | Msa0043740:intron | 20.0% |
| ! | ACTTGATCATATCTTATTCA+AGG | - | chr1_1:75133292-75133311 | Msa0043740:three_prime_UTR | 25.0% |
| !! | TATGAAATGAAAAAAGTGTG+AGG | + | chr1_1:75133337-75133356 | None:intergenic | 25.0% |
| !! | TTTCTTTGTTTGTGTTTCAT+TGG | - | chr1_1:75133384-75133403 | Msa0043740:CDS | 25.0% |
| ! | TTCAAATAAGTCGATCTAAA+GGG | + | chr1_1:75133590-75133609 | None:intergenic | 25.0% |
| ! | AGAACTTATGAAAACATCTT+AGG | + | chr1_1:75133734-75133753 | None:intergenic | 25.0% |
| ! | AAGCACTTATTAGACTATTT+GGG | + | chr1_1:75133757-75133776 | None:intergenic | 25.0% |
| ! | TAAGCACTTATTAGACTATT+TGG | + | chr1_1:75133758-75133777 | None:intergenic | 25.0% |
| ! | ATAACACATTTCACAGTTTA+GGG | + | chr1_1:75133817-75133836 | None:intergenic | 25.0% |
| !!! | ACATTAATTTTGGTTATCAG+TGG | - | chr1_1:75133855-75133874 | Msa0043740:intron | 25.0% |
| ! | ATCACGATTGCTAAAATAAA+AGG | + | chr1_1:75134232-75134251 | None:intergenic | 25.0% |
| ! | ATGATGTGTAAAAAACTACA+AGG | - | chr1_1:75134301-75134320 | Msa0043740:intron | 25.0% |
| !!! | GAAGATTAGTTTAAAAAGGA+TGG | - | chr1_1:75134338-75134357 | Msa0043740:intron | 25.0% |
| ! | CTTTGCTTAAAAATCAATGA+TGG | + | chr1_1:75134391-75134410 | None:intergenic | 25.0% |
| !!! | CATCATTGATTTTTAAGCAA+AGG | - | chr1_1:75134389-75134408 | Msa0043740:intron | 25.0% |
| ! | TGTAATTTCTTTGACATCTA+AGG | - | chr1_1:75134827-75134846 | Msa0043740:intron | 25.0% |
| !! | GATTATTTCCAATATCGATT+TGG | + | chr1_1:75135000-75135019 | None:intergenic | 25.0% |
| ! | TTTCCCATATAAATTGATCT+TGG | + | chr1_1:75135022-75135041 | None:intergenic | 25.0% |
| ! | GATCAATTTATATGGGAAAA+TGG | - | chr1_1:75135023-75135042 | Msa0043740:CDS | 25.0% |
| !! | ACTATCTATCATTTGTTGAA+TGG | - | chr1_1:75135047-75135066 | Msa0043740:CDS | 25.0% |
| !!! | TTGGTTGGTAATTTAATTTG+TGG | - | chr1_1:75135273-75135292 | Msa0043740:intron | 25.0% |
| ! | GAACAAATGCATAGTTAATT+TGG | + | chr1_1:75135340-75135359 | None:intergenic | 25.0% |
| !! | GCATTTGTTCTTTCTTTTAT+AGG | - | chr1_1:75135350-75135369 | Msa0043740:intron | 25.0% |
| !!! | GCTTAAGTTTTATTCTTCTT+TGG | + | chr1_1:75135898-75135917 | None:intergenic | 25.0% |
| ! | ACAAGTTAAACTAACAGAAA+TGG | + | chr1_1:75136068-75136087 | None:intergenic | 25.0% |
| !!! | TTAGTTTAACTTGTAGTAGT+AGG | - | chr1_1:75136074-75136093 | Msa0043740:CDS | 25.0% |
| !!! | AATGGTTTTGTGATCCAAAT+CGG | + | chr1_1:75133079-75133098 | None:intergenic | 30.0% |
| GATATTGGATTATGGTGTAA+GGG | + | chr1_1:75133110-75133129 | None:intergenic | 30.0% | |
| TGATATTGGATTATGGTGTA+AGG | + | chr1_1:75133111-75133130 | None:intergenic | 30.0% | |
| AAGAAAAAGTCAACCATTGA+AGG | - | chr1_1:75133173-75133192 | Msa0043740:three_prime_UTR | 30.0% | |
| TTGTTTGTGTTTCATTGGAA+TGG | - | chr1_1:75133389-75133408 | Msa0043740:CDS | 30.0% | |
| GTTCAAATAAGTCGATCTAA+AGG | + | chr1_1:75133591-75133610 | None:intergenic | 30.0% | |
| CATAACACATTTCACAGTTT+AGG | + | chr1_1:75133818-75133837 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTGTCATGGATA+TGG | - | chr1_1:75133956-75133975 | Msa0043740:CDS | 30.0% |
| CTAGAGAGTTATCAAATTTG+AGG | - | chr1_1:75134024-75134043 | Msa0043740:intron | 30.0% | |
| AGAGTTATCAAATTTGAGGA+TGG | - | chr1_1:75134028-75134047 | Msa0043740:intron | 30.0% | |
| ! | ATAATTGTTCAGGTATTGCA+AGG | - | chr1_1:75134064-75134083 | Msa0043740:intron | 30.0% |
| TCGACTAAATCATCAAAACT+TGG | + | chr1_1:75134171-75134190 | None:intergenic | 30.0% | |
| !! | GATTAGTTTAAAAAGGATGG+AGG | - | chr1_1:75134341-75134360 | Msa0043740:intron | 30.0% |
| GATTTGCCGCAATTTATATT+CGG | - | chr1_1:75134619-75134638 | Msa0043740:intron | 30.0% | |
| ATTTATATTCGGACAGTCAA+TGG | - | chr1_1:75134630-75134649 | Msa0043740:intron | 30.0% | |
| TTTATATTCGGACAGTCAAT+GGG | - | chr1_1:75134631-75134650 | Msa0043740:intron | 30.0% | |
| ATTTGAAGGAACCAAATGAT+TGG | - | chr1_1:75134677-75134696 | Msa0043740:intron | 30.0% | |
| TTTGAAGGAACCAAATGATT+GGG | - | chr1_1:75134678-75134697 | Msa0043740:intron | 30.0% | |
| TGTCAAAGAAATTACAAGAG+TGG | + | chr1_1:75134823-75134842 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAAGAATAC+TGG | + | chr1_1:75134892-75134911 | None:intergenic | 30.0% | |
| ! | CAAGTTTGAGATTCAATACT+TGG | - | chr1_1:75134903-75134922 | Msa0043740:intron | 30.0% |
| TCAAACAAGAACAACAAATC+AGG | + | chr1_1:75135110-75135129 | None:intergenic | 30.0% | |
| !! | TATGGAAATAGTTTTGCCTT+TGG | + | chr1_1:75135207-75135226 | None:intergenic | 30.0% |
| ATGCTTTCTCATAAAGAAAC+TGG | + | chr1_1:75135641-75135660 | None:intergenic | 30.0% | |
| AAGACACTAAAGATCTATGA+AGG | - | chr1_1:75135672-75135691 | Msa0043740:intron | 30.0% | |
| ACAGAAGAAATTCTTTCATC+AGG | + | chr1_1:75135726-75135745 | None:intergenic | 30.0% | |
| TCAAAGTTCTTAAGTCACTT+GGG | + | chr1_1:75135920-75135939 | None:intergenic | 30.0% | |
| TTCAAAGTTCTTAAGTCACT+TGG | + | chr1_1:75135921-75135940 | None:intergenic | 30.0% | |
| ! | ATCTACATACTTCTAGAAAG+TGG | + | chr1_1:75135960-75135979 | None:intergenic | 30.0% |
| !! | TTTGTTAGTTTGTTAGAGTG+TGG | - | chr1_1:75136033-75136052 | Msa0043740:CDS | 30.0% |
| AACTTGTAGTAGTAGGAAAT+TGG | - | chr1_1:75136081-75136100 | Msa0043740:exon | 30.0% | |
| GATTATGGTGTAAGGGTAAA+GGG | + | chr1_1:75133103-75133122 | None:intergenic | 35.0% | |
| ATCAAGGTTAAGAGAAGCTA+TGG | + | chr1_1:75133219-75133238 | None:intergenic | 35.0% | |
| TTGGTTATCAGTGGTATGAA+AGG | - | chr1_1:75133864-75133883 | Msa0043740:intron | 35.0% | |
| AGTGGTATGAAAGGAATTCA+AGG | - | chr1_1:75133873-75133892 | Msa0043740:intron | 35.0% | |
| GTGGTATGAAAGGAATTCAA+GGG | - | chr1_1:75133874-75133893 | Msa0043740:CDS | 35.0% | |
| TGGTATGAAAGGAATTCAAG+GGG | - | chr1_1:75133875-75133894 | Msa0043740:CDS | 35.0% | |
| AAAAACAAAGCCCCTTTGAT+TGG | + | chr1_1:75133944-75133963 | None:intergenic | 35.0% | |
| ACTTGCACTTTCTTCTTTGA+AGG | - | chr1_1:75133983-75134002 | Msa0043740:CDS | 35.0% | |
| ! | ATTTGATAACTCTCTAGCTC+TGG | + | chr1_1:75134021-75134040 | None:intergenic | 35.0% |
| !!! | ATTTTAGCTGCTTCTGGATT+TGG | - | chr1_1:75134087-75134106 | Msa0043740:intron | 35.0% |
| !! | TGGATTTGGTGTTTATGCAA+TGG | - | chr1_1:75134101-75134120 | Msa0043740:intron | 35.0% |
| GGTTTATCTGAAGGATTACA+TGG | - | chr1_1:75134138-75134157 | Msa0043740:intron | 35.0% | |
| ATAGATTGCAACAACGATCA+CGG | + | chr1_1:75134259-75134278 | None:intergenic | 35.0% | |
| GTCAATGTAAATGCATCGAA+AGG | + | chr1_1:75134580-75134599 | None:intergenic | 35.0% | |
| GACTGTCCGAATATAAATTG+CGG | + | chr1_1:75134628-75134647 | None:intergenic | 35.0% | |
| TGCTCTTAAAGCTCATTTGA+AGG | - | chr1_1:75134663-75134682 | Msa0043740:intron | 35.0% | |
| AATGGACATACCTTACACAT+TGG | + | chr1_1:75134724-75134743 | None:intergenic | 35.0% | |
| ! | TGCAAAAGAATACTGGTTGA+GGG | + | chr1_1:75134885-75134904 | None:intergenic | 35.0% |
| ! | TTGCAAAAGAATACTGGTTG+AGG | + | chr1_1:75134886-75134905 | None:intergenic | 35.0% |
| ! | GCTTTTGTCCAAATCGATAT+TGG | - | chr1_1:75134989-75135008 | Msa0043740:CDS | 35.0% |
| AGTTGTATTAGCACATCTGT+TGG | - | chr1_1:75135078-75135097 | Msa0043740:intron | 35.0% | |
| TTGATTGCCAAGATATCAGA+AGG | - | chr1_1:75135126-75135145 | Msa0043740:intron | 35.0% | |
| TAACATGCCTTCTGATATCT+TGG | + | chr1_1:75135136-75135155 | None:intergenic | 35.0% | |
| AACACCTTCAAGATTGTAGT+TGG | + | chr1_1:75135162-75135181 | None:intergenic | 35.0% | |
| ! | CTTGTCTAAAATGATGCCAA+AGG | - | chr1_1:75135188-75135207 | Msa0043740:CDS | 35.0% |
| GGCAAAACTATTTCCATACA+AGG | - | chr1_1:75135209-75135228 | Msa0043740:CDS | 35.0% | |
| AGTTCAGATAGATCCTTGTA+TGG | + | chr1_1:75135225-75135244 | None:intergenic | 35.0% | |
| ! | TGGTAGAGTGCAAATTTTCA+AGG | + | chr1_1:75135320-75135339 | None:intergenic | 35.0% |
| GATCAAACACGATTAAGAAC+TGG | - | chr1_1:75135399-75135418 | Msa0043740:intron | 35.0% | |
| TCAAGATATTGAGTCACAGT+TGG | - | chr1_1:75135443-75135462 | Msa0043740:intron | 35.0% | |
| TTTGCTCACTTTCTGTTACT+TGG | - | chr1_1:75135485-75135504 | Msa0043740:intron | 35.0% | |
| GCTCCATTATTGATACTTCA+TGG | - | chr1_1:75135582-75135601 | Msa0043740:intron | 35.0% | |
| ! | GCTCCATGAAGTATCAATAA+TGG | + | chr1_1:75135588-75135607 | None:intergenic | 35.0% |
| ! | TAAAGAAACTGGCTCACTAA+TGG | + | chr1_1:75135630-75135649 | None:intergenic | 35.0% |
| ACACTAAAGATCTATGAAGG+AGG | - | chr1_1:75135675-75135694 | Msa0043740:intron | 35.0% | |
| TCCATAATGACATCATCTCA+TGG | - | chr1_1:75135745-75135764 | Msa0043740:intron | 35.0% | |
| ACCATGAGATGATGTCATTA+TGG | + | chr1_1:75135749-75135768 | None:intergenic | 35.0% | |
| TCATCTCATGGTTAGACATT+AGG | - | chr1_1:75135757-75135776 | Msa0043740:intron | 35.0% | |
| TTAGGTGCTCAAGATAATTG+TGG | - | chr1_1:75135775-75135794 | Msa0043740:intron | 35.0% | |
| ! | ATTCTTCTTTGGCTCATCTT+GGG | + | chr1_1:75135887-75135906 | None:intergenic | 35.0% |
| ! | TATTCTTCTTTGGCTCATCT+TGG | + | chr1_1:75135888-75135907 | None:intergenic | 35.0% |
| AGAAAGTGGTGACTGATTAT+CGG | + | chr1_1:75135946-75135965 | None:intergenic | 35.0% | |
| GGATTATGGTGTAAGGGTAA+AGG | + | chr1_1:75133104-75133123 | None:intergenic | 40.0% | |
| CTCATCACTGATACCTTCAA+TGG | + | chr1_1:75133189-75133208 | None:intergenic | 40.0% | |
| TATAATAGACTGCACCTGCT+GGG | - | chr1_1:75133419-75133438 | Msa0043740:CDS | 40.0% | |
| ! | CGATGATGATGAGTATAGCA+AGG | - | chr1_1:75133496-75133515 | Msa0043740:CDS | 40.0% |
| ! | GTATAGCAAGGCATTATGCT+TGG | - | chr1_1:75133508-75133527 | Msa0043740:CDS | 40.0% |
| GTCGCACAAATGTTTATGTC+AGG | + | chr1_1:75133620-75133639 | None:intergenic | 40.0% | |
| ! | TTCACAGTTTAGGGCATGTT+TGG | + | chr1_1:75133808-75133827 | None:intergenic | 40.0% |
| TGAAAGGAATTCAAGGGGAT+TGG | - | chr1_1:75133880-75133899 | Msa0043740:CDS | 40.0% | |
| ! | TGGAGATTTTCTGCAAAAGC+TGG | - | chr1_1:75133900-75133919 | Msa0043740:CDS | 40.0% |
| AACATGGCGTTCCAATCAAA+GGG | - | chr1_1:75133930-75133949 | Msa0043740:CDS | 40.0% | |
| ! | GTTTATGCAATGGATTTCCC+AGG | - | chr1_1:75134111-75134130 | Msa0043740:intron | 40.0% |
| CTTCAGATAAACCGAAACCT+GGG | + | chr1_1:75134131-75134150 | None:intergenic | 40.0% | |
| AAGGAACCAAATGATTGGGA+CGG | - | chr1_1:75134682-75134701 | Msa0043740:intron | 40.0% | |
| TCAAATGCAACACAGAGGAA+TGG | + | chr1_1:75134742-75134761 | None:intergenic | 40.0% | |
| CAACATCAAATGCAACACAG+AGG | + | chr1_1:75134747-75134766 | None:intergenic | 40.0% | |
| ACCTTCAAGATTGTAGTTGG+CGG | + | chr1_1:75135159-75135178 | None:intergenic | 40.0% | |
| !! | GAACTTATTTTCCGAGAACC+CGG | - | chr1_1:75135240-75135259 | Msa0043740:CDS | 40.0% |
| ! | ACCAACCAATTTTCTCTTGC+CGG | + | chr1_1:75135262-75135281 | None:intergenic | 40.0% |
| AACACGATTAAGAACTGGCA+TGG | - | chr1_1:75135404-75135423 | Msa0043740:intron | 40.0% | |
| CTGTGACTCAATATCTTGAG+TGG | + | chr1_1:75135442-75135461 | None:intergenic | 40.0% | |
| TATTGAGTCACAGTTGGAGA+AGG | - | chr1_1:75135449-75135468 | Msa0043740:intron | 40.0% | |
| ACTTCATGGAGCAGAAGATA+AGG | - | chr1_1:75135596-75135615 | Msa0043740:intron | 40.0% | |
| ATCTATGAAGGAGGTTACCA+TGG | - | chr1_1:75135684-75135703 | Msa0043740:intron | 40.0% | |
| TGGAGTTTGAACAGAGCATG+TGG | + | chr1_1:75133015-75133034 | None:intergenic | 45.0% | |
| CGTTGTCATAGATAGCTCCA+TGG | + | chr1_1:75133051-75133070 | None:intergenic | 45.0% | |
| ATGACAACGACACTCCGATT+TGG | - | chr1_1:75133062-75133081 | Msa0043740:three_prime_UTR | 45.0% | |
| GGTGTAAGGGTAAAGGGAAA+TGG | + | chr1_1:75133097-75133116 | None:intergenic | 45.0% | |
| TGCATTCACTCTCAGTCTCA+GGG | + | chr1_1:75133153-75133172 | None:intergenic | 45.0% | |
| TTGCATTCACTCTCAGTCTC+AGG | + | chr1_1:75133154-75133173 | None:intergenic | 45.0% | |
| ! | TACGAGAAGGTGCATGATCA+AGG | + | chr1_1:75133235-75133254 | None:intergenic | 45.0% |
| TGTCGAACATGTCTACGAGA+AGG | + | chr1_1:75133248-75133267 | None:intergenic | 45.0% | |
| TTGCTGATGCACATGAGTGA+AGG | + | chr1_1:75133273-75133292 | None:intergenic | 45.0% | |
| CTATAATAGACTGCACCTGC+TGG | - | chr1_1:75133418-75133437 | Msa0043740:CDS | 45.0% | |
| TCTTGAGTTATGATCCCAGC+AGG | + | chr1_1:75133436-75133455 | None:intergenic | 45.0% | |
| AAAAGCTGGATGCCAGAACA+TGG | - | chr1_1:75133914-75133933 | Msa0043740:CDS | 45.0% | |
| TTGATTGGAACGCCATGTTC+TGG | + | chr1_1:75133929-75133948 | None:intergenic | 45.0% | |
| GAACATGGCGTTCCAATCAA+AGG | - | chr1_1:75133929-75133948 | Msa0043740:CDS | 45.0% | |
| ACATGGCGTTCCAATCAAAG+GGG | - | chr1_1:75133931-75133950 | Msa0043740:CDS | 45.0% | |
| !!! | GGGGCTTTGTTTTTCTGTCA+TGG | - | chr1_1:75133950-75133969 | Msa0043740:CDS | 45.0% |
| !!! | GCAAGGATTTTAGCTGCTTC+TGG | - | chr1_1:75134081-75134100 | Msa0043740:intron | 45.0% |
| ! | GCAATGGATTTCCCAGGTTT+CGG | - | chr1_1:75134117-75134136 | Msa0043740:intron | 45.0% |
| CCTTCAGATAAACCGAAACC+TGG | + | chr1_1:75134132-75134151 | None:intergenic | 45.0% | |
| CCAGGTTTCGGTTTATCTGA+AGG | - | chr1_1:75134129-75134148 | Msa0043740:intron | 45.0% | |
| TACATTGACAGCTAGACCAG+AGG | - | chr1_1:75134591-75134610 | Msa0043740:intron | 45.0% | |
| ATATTCGGACAGTCAATGGG+TGG | - | chr1_1:75134634-75134653 | Msa0043740:intron | 45.0% | |
| ATGACTCCGTCCCAATCATT+TGG | + | chr1_1:75134691-75134710 | None:intergenic | 45.0% | |
| CCTTACACATTGGAGCTACA+AGG | + | chr1_1:75134714-75134733 | None:intergenic | 45.0% | |
| CCTTGTAGCTCCAATGTGTA+AGG | - | chr1_1:75134711-75134730 | Msa0043740:intron | 45.0% | |
| ACCGCCAACTACAATCTTGA+AGG | - | chr1_1:75135155-75135174 | Msa0043740:CDS | 45.0% | |
| ! | ATTTTCTCTTGCCGGGTTCT+CGG | + | chr1_1:75135254-75135273 | None:intergenic | 45.0% |
| AGAACCCGGCAAGAGAAAAT+TGG | - | chr1_1:75135254-75135273 | Msa0043740:CDS | 45.0% | |
| ! | CCAACCAATTTTCTCTTGCC+GGG | + | chr1_1:75135261-75135280 | None:intergenic | 45.0% |
| ! | AGGAGGTTACCATGGCATTT+TGG | - | chr1_1:75135692-75135711 | Msa0043740:intron | 45.0% |
| ! | GGTTACCATGGCATTTTGGA+AGG | - | chr1_1:75135696-75135715 | Msa0043740:intron | 45.0% |
| GTTCACCTTCCAAAATGCCA+TGG | + | chr1_1:75135704-75135723 | None:intergenic | 45.0% | |
| GGTGCTCAAGATAATTGTGG+TGG | - | chr1_1:75135778-75135797 | Msa0043740:intron | 45.0% | |
| TCCACCAAGCTCAGTAACCA+TGG | - | chr1_1:75133031-75133050 | Msa0043740:three_prime_UTR | 50.0% | |
| TCCATGGTTACTGAGCTTGG+TGG | + | chr1_1:75133035-75133054 | None:intergenic | 50.0% | |
| AGCTCCATGGTTACTGAGCT+TGG | + | chr1_1:75133038-75133057 | None:intergenic | 50.0% | |
| CCCGGCAAGAGAAAATTGGT+TGG | - | chr1_1:75135258-75135277 | Msa0043740:intron | 50.0% | |
| TGACAGCTAGACCAGAGGTG+AGG | - | chr1_1:75134596-75134615 | Msa0043740:intron | 55.0% | |
| GACAGCTAGACCAGAGGTGA+GGG | - | chr1_1:75134597-75134616 | Msa0043740:intron | 55.0% | |
| TGCGGCAAATCCCTCACCTC+TGG | + | chr1_1:75134610-75134629 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 75132980 | 75136169 | 75132980 | ID=Msa0043740;Name=Msa0043740 |
| chr1_1 | mRNA | 75132980 | 75136169 | 75132980 | ID=Msa0043740-mRNA-1;Parent=Msa0043740;Name=Msa0043740-mRNA-1;_AED=0.10;_eAED=0.10;_QI=70|0.83|1|1|1|1|7|378|374 |
| chr1_1 | exon | 75132980 | 75133573 | 75132980 | ID=Msa0043740-mRNA-1:exon:25349;Parent=Msa0043740-mRNA-1 |
| chr1_1 | exon | 75133679 | 75133777 | 75133679 | ID=Msa0043740-mRNA-1:exon:25348;Parent=Msa0043740-mRNA-1 |
| chr1_1 | exon | 75133874 | 75134011 | 75133874 | ID=Msa0043740-mRNA-1:exon:25347;Parent=Msa0043740-mRNA-1 |
| chr1_1 | exon | 75134417 | 75134547 | 75134417 | ID=Msa0043740-mRNA-1:exon:25346;Parent=Msa0043740-mRNA-1 |
| chr1_1 | exon | 75134927 | 75135073 | 75134927 | ID=Msa0043740-mRNA-1:exon:25345;Parent=Msa0043740-mRNA-1 |
| chr1_1 | exon | 75135145 | 75135274 | 75135145 | ID=Msa0043740-mRNA-1:exon:25344;Parent=Msa0043740-mRNA-1 |
| chr1_1 | exon | 75135836 | 75136169 | 75135836 | ID=Msa0043740-mRNA-1:exon:25343;Parent=Msa0043740-mRNA-1 |
| chr1_1 | five_prime_UTR | 75136100 | 75136169 | 75136100 | ID=Msa0043740-mRNA-1:five_prime_utr;Parent=Msa0043740-mRNA-1 |
| chr1_1 | CDS | 75135836 | 75136099 | 75135836 | ID=Msa0043740-mRNA-1:cds;Parent=Msa0043740-mRNA-1 |
| chr1_1 | CDS | 75135145 | 75135274 | 75135145 | ID=Msa0043740-mRNA-1:cds;Parent=Msa0043740-mRNA-1 |
| chr1_1 | CDS | 75134927 | 75135073 | 75134927 | ID=Msa0043740-mRNA-1:cds;Parent=Msa0043740-mRNA-1 |
| chr1_1 | CDS | 75134417 | 75134547 | 75134417 | ID=Msa0043740-mRNA-1:cds;Parent=Msa0043740-mRNA-1 |
| chr1_1 | CDS | 75133874 | 75134011 | 75133874 | ID=Msa0043740-mRNA-1:cds;Parent=Msa0043740-mRNA-1 |
| chr1_1 | CDS | 75133679 | 75133777 | 75133679 | ID=Msa0043740-mRNA-1:cds;Parent=Msa0043740-mRNA-1 |
| chr1_1 | CDS | 75133358 | 75133573 | 75133358 | ID=Msa0043740-mRNA-1:cds;Parent=Msa0043740-mRNA-1 |
| chr1_1 | three_prime_UTR | 75132980 | 75133357 | 75132980 | ID=Msa0043740-mRNA-1:three_prime_utr;Parent=Msa0043740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
