AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139770 MtrunA17_Chr4g0016641 92.170 613 4 1 1 569 271 883 0.0 1142
Msa0139770 MtrunA17_CPg0493041 92.170 613 4 1 1 569 271 883 0.0 1142
Msa0139770 MtrunA17_Chr4g0015531 78.804 368 4 3 31 398 1 294 0.0 562
Msa0139770 MtrunA17_Chr1g0159041 67.905 377 41 5 201 569 1 305 4.46e-166 475
Msa0139770 MtrunA17_Chr1g0159051 94.286 105 6 0 4 108 12 116 5.13e-63 202
Msa0139770 MtrunA17_Chr7g0247561 96.154 78 3 0 355 432 1 78 9.13e-49 164
Msa0139770 MtrunA17_Chr3g0136911 26.838 272 172 7 317 563 724 993 5.76e-17 85.1
Msa0139770 MtrunA17_Chr1g0155911 25.116 215 127 4 383 563 782 996 6.18e-17 84.7
Msa0139770 MtrunA17_Chr8g0375171 26.471 272 173 7 317 563 722 991 1.49e-16 83.6
Msa0139770 MtrunA17_Chr8g0345421 25.926 216 127 3 383 566 728 942 2.04e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139770 ATCG00190.1 82.927 615 59 2 1 569 266 880 0.0 1044
Msa0139770 AT4G21710.1 25.581 215 126 4 383 563 779 993 6.42e-16 82.0
Msa0139770 AT3G23780.1 26.396 197 124 2 387 562 769 965 1.23e-14 78.2
Msa0139770 AT3G23780.2 26.396 197 124 2 387 562 769 965 1.23e-14 78.2
Msa0139770 AT3G18090.2 25.888 197 125 2 387 562 651 847 4.79e-14 75.9
Msa0139770 AT3G18090.1 25.888 197 125 2 387 562 651 847 5.06e-14 75.9
Msa0139770 AT3G18090.3 25.888 197 125 2 387 562 651 847 6.52e-14 75.5

Find 127 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGAAAATTGAGTTATT+TGG 0.135693 1_3:-73597458 Msa0139770:CDS
TGTCTAAATTTCGGAGTAAA+TGG 0.137285 1_3:+73596483 None:intergenic
CATTTGATTGGAATGAAATT+TGG 0.153768 1_3:-73597751 Msa0139770:CDS
GAACGTTGATATCTAATTAA+TGG 0.244746 1_3:+73596806 None:intergenic
GGAATCAATGTAGGACTTAT+TGG 0.263649 1_3:-73597340 Msa0139770:CDS
ACGAGCTATACTTGGGATTC+AGG 0.269809 1_3:-73596348 Msa0139770:intron
AGCACTGAATCGAGGTATTC+AGG 0.270037 1_3:-73597170 Msa0139770:CDS
GATCTATTACAAGATCAATT+TGG 0.270369 1_3:-73597670 Msa0139770:CDS
GATTCATAAGTGGTTGTTAA+TGG 0.270524 1_3:+73597547 None:intergenic
CGATCTAAAACTTGAGATAA+TGG 0.281648 1_3:+73597508 None:intergenic
GGTCTTCCATCTTGCAAATA+AGG 0.291965 1_3:+73596108 None:intergenic
ATAATTCGAGGAACTATATC+TGG 0.305120 1_3:-73597622 Msa0139770:CDS
GCATCATTATGCTCGATAAA+AGG 0.305503 1_3:+73597031 None:intergenic
ATTCGTGAGGGTACCCCTAA+TGG 0.306675 1_3:+73596066 None:intergenic
GGGAGAAAATTGAGTTATTT+GGG 0.307341 1_3:-73597457 Msa0139770:CDS
CGCCAAGTGGCCTTAGATTC+AGG 0.326928 1_3:-73596920 Msa0139770:CDS
TGTTGGCGGTGAACTCGCTT+TGG 0.329325 1_3:-73596693 Msa0139770:CDS
CGCATTTACCTTTATGAACC+TGG 0.329782 1_3:+73596753 None:intergenic
AACGATCTTTCCTGCGTGTT+CGG 0.330632 1_3:+73596883 None:intergenic
AATGAATGTAGGACAGATAT+TGG 0.340082 1_3:-73596046 Msa0139770:CDS
TCACGCAAGGATTGGTCCTT+GGG 0.341088 1_3:-73597305 Msa0139770:CDS
ATATGGTCTTCAACCCATTA+GGG 0.343228 1_3:-73596080 Msa0139770:CDS
GTCAAGCAGTTCCTCTTTCT+CGG 0.344262 1_3:-73596976 Msa0139770:CDS
CTGGGATCTTGGGTAGAAAC+AGG 0.344385 1_3:-73596443 Msa0139770:CDS
CCATGAACTATTTGGGTCAA+TGG 0.354074 1_3:+73597478 None:intergenic
CGGTCCGAAAAGTGCATTGT+TGG 0.359288 1_3:-73596956 Msa0139770:CDS
AGCGGGAACTCCTGAATCTA+AGG 0.364603 1_3:+73596910 None:intergenic
TATGCTCGATAAAAGGAATC+AGG 0.367331 1_3:+73597038 None:intergenic
TTGGGTCCTGGAGGATTGAC+GGG 0.382208 1_3:-73597439 Msa0139770:CDS
GAATGTTCACTCGGATTAGC+TGG 0.386652 1_3:-73596024 Msa0139770:CDS
ACAGCTGCGGATCATTTGAT+TGG 0.389432 1_3:-73597763 Msa0139770:CDS
GATATGGTCTTCAACCCATT+AGG 0.395616 1_3:-73596081 Msa0139770:CDS
GTTGGCGGTGAACTCGCTTT+GGG 0.396452 1_3:-73596692 Msa0139770:CDS
AGATGGAAGACCCGTTGATA+TGG 0.398344 1_3:-73596097 Msa0139770:CDS
ATTCCTTCCGAGGTGTCAAT+TGG 0.403361 1_3:+73597358 None:intergenic
AGATTATTACGAGCTATACT+TGG 0.409704 1_3:-73596356 Msa0139770:CDS
TGTAGGACTTATTGGATCCT+TGG 0.411030 1_3:-73597332 Msa0139770:CDS
TCTAACTATTGCATGGGAAC+AGG 0.414074 1_3:-73597110 Msa0139770:CDS
GAAAAGTGCATTGTTGGAAC+TGG 0.419529 1_3:-73596950 Msa0139770:CDS
TTCACGCAAGGATTGGTCCT+TGG 0.420745 1_3:-73597306 Msa0139770:CDS
TTTGGGTCCTGGAGGATTGA+CGG 0.423824 1_3:-73597440 Msa0139770:CDS
GAATTGTGATTCTGGGATCT+TGG 0.426630 1_3:-73596454 Msa0139770:CDS
GTCTAAATTTCGGAGTAAAT+GGG 0.428736 1_3:+73596484 None:intergenic
AACTATTTGGGTCAATGGAT+TGG 0.429624 1_3:+73597483 None:intergenic
GCCGGGAGACATGGAAATAA+AGG 0.429982 1_3:-73596165 Msa0139770:CDS
GTATATCAATGTTCAGTCTT+CGG 0.430453 1_3:+73597824 None:intergenic
CCATTGACCCAAATAGTTCA+TGG 0.431227 1_3:-73597478 Msa0139770:CDS
AAGTAGAGATGAATACTATA+TGG 0.431841 1_3:-73597212 Msa0139770:CDS
TTCGTGAGGGTACCCCTAAT+GGG 0.434009 1_3:+73596067 None:intergenic
GAGGATTCTTTCGCCATTTG+AGG 0.441108 1_3:+73596395 None:intergenic
GATATCCATCCTAGTCACTA+TGG 0.449002 1_3:-73597391 Msa0139770:CDS
ACCTTTATTTCCATGTCTCC+CGG 0.449391 1_3:+73596164 None:intergenic
AAATTGAGTTATTTGGGTCC+TGG 0.453699 1_3:-73597451 Msa0139770:CDS
GCTCGTAATAATCTATCTTC+CGG 0.462719 1_3:+73596365 None:intergenic
GGGTAAATTAACGCCTCAAA+TGG 0.467677 1_3:-73596408 Msa0139770:CDS
GATCTAAAACTTGAGATAAT+GGG 0.468332 1_3:+73597509 None:intergenic
ATTACAAGATCAATTTGGAT+TGG 0.471878 1_3:-73597665 Msa0139770:CDS
AAGAATTTCTAACTATTGCA+TGG 0.481440 1_3:-73597117 Msa0139770:CDS
CCTGCGTGTTCGGCTATAGC+GGG 0.483049 1_3:+73596893 None:intergenic
CGTTTAGAAAATATAATTCG+AGG 0.485783 1_3:-73597634 Msa0139770:CDS
AATTGTGATTCTGGGATCTT+GGG 0.486220 1_3:-73596453 Msa0139770:CDS
ATTGGAATGAAATTTGGAAT+GGG 0.491267 1_3:-73597745 Msa0139770:CDS
TTGGCAATTCACGCAAGGAT+TGG 0.498707 1_3:-73597313 Msa0139770:CDS
GATTGGAATGAAATTTGGAA+TGG 0.498930 1_3:-73597746 Msa0139770:CDS
GTGCATTGTTGGAACTGGAT+TGG 0.504759 1_3:-73596945 Msa0139770:CDS
CTCCTGAATCTAAGGCCACT+TGG 0.506387 1_3:+73596918 None:intergenic
TGTACTCATTAGTGAACGTC+TGG 0.512500 1_3:-73596615 Msa0139770:CDS
GTTCGCCCCGTCAATCCTCC+AGG 0.515843 1_3:+73597433 None:intergenic
GATATGCCTTATTTGCAAGA+TGG 0.518600 1_3:-73596114 Msa0139770:CDS
TATTAGTAGCTTATATGCCA+TGG 0.519177 1_3:-73596661 Msa0139770:CDS
CAGAAACGTGAAATTAAAGT+AGG 0.520965 1_3:-73596198 Msa0139770:CDS
ATATAGTATTCATCTCTACT+TGG 0.523407 1_3:+73597214 None:intergenic
AAAGTAGGTGATAAAGTGGC+CGG 0.529519 1_3:-73596183 Msa0139770:CDS
GCATTTACCTTTATGAACCT+GGG 0.530323 1_3:+73596754 None:intergenic
GCAGATGGTGCTGCTACTGT+TGG 0.531919 1_3:-73596710 Msa0139770:CDS
GATAAAGTGGCCGGGAGACA+TGG 0.532845 1_3:-73596174 Msa0139770:CDS
GGGTTGAAGACCATATCAAC+GGG 0.535156 1_3:+73596087 None:intergenic
AATTCTTGACGGTATCGAGC+TGG 0.536702 1_3:+73597133 None:intergenic
CAATAGTTAGAAATTCTTGA+CGG 0.539101 1_3:+73597122 None:intergenic
TAATCTATCTTCCGGAGCAT+AGG 0.540322 1_3:+73596373 None:intergenic
TCTATCTTCCGGAGCATAGG+AGG 0.540370 1_3:+73596376 None:intergenic
TCCTGCGTGTTCGGCTATAG+CGG 0.549505 1_3:+73596892 None:intergenic
AGAATTTCTAACTATTGCAT+GGG 0.549733 1_3:-73597116 Msa0139770:CDS
CAGATATTGGAATGTTCACT+CGG 0.551609 1_3:-73596033 Msa0139770:CDS
TAGTGATTCTTTCAGGACCA+TGG 0.551937 1_3:+73596528 None:intergenic
GAATACTATATGGTAGCGAC+GGG 0.553560 1_3:-73597202 Msa0139770:CDS
GATGGTGCTGCTACTGTTGG+CGG 0.553778 1_3:-73596707 Msa0139770:CDS
CATTGACCCAAATAGTTCAT+GGG 0.556065 1_3:-73597477 Msa0139770:CDS
GATTATTACGAGCTATACTT+GGG 0.558504 1_3:-73596355 Msa0139770:CDS
ATCTTGTAATAGATCTGCTA+CGG 0.559735 1_3:+73597678 None:intergenic
GTCACTAAATTCTGAGGAGT+AGG 0.563396 1_3:+73597577 None:intergenic
AATGTTCACTCGGATTAGCT+GGG 0.569063 1_3:-73596023 Msa0139770:CDS
GAAAGAATCCTCCTATGCTC+CGG 0.570879 1_3:-73596384 Msa0139770:CDS
TGAATACTATATGGTAGCGA+CGG 0.571395 1_3:-73597203 Msa0139770:CDS
TCCTACATTGATTCCTTCCG+AGG 0.572209 1_3:+73597348 None:intergenic
CAAATGCGTCCATAGTGACT+AGG 0.573493 1_3:+73597382 None:intergenic
AATTAAAGTAGGTGATAAAG+TGG 0.581077 1_3:-73596187 Msa0139770:CDS
CAGACTCATGTGACAAGCCA+TGG 0.581560 1_3:-73596545 Msa0139770:CDS
CTGTCCTACATTCATTCGTG+AGG 0.583153 1_3:+73596053 None:intergenic
AGTAAATGGGCTTCTAGATG+TGG 0.584284 1_3:+73596497 None:intergenic
TGTCCAATTGACACCTCGGA+AGG 0.584582 1_3:-73597361 Msa0139770:CDS
ATGCTCGATAAAAGGAATCA+GGG 0.587469 1_3:+73597039 None:intergenic
TGGGATCTTGGGTAGAAACA+GGG 0.592045 1_3:-73596442 Msa0139770:CDS
TCAGAATTGTAACCTTCCCA+TGG 0.596416 1_3:+73596644 None:intergenic
ATTAGTAGCTTATATGCCAT+GGG 0.596673 1_3:-73596660 Msa0139770:CDS
AAGTAGGTGATAAAGTGGCC+GGG 0.597954 1_3:-73596182 Msa0139770:CDS
CACGCAAGGATTGGTCCTTG+GGG 0.608804 1_3:-73597304 Msa0139770:CDS
GTAGCTTATATGCCATGGGA+AGG 0.611195 1_3:-73596656 Msa0139770:CDS
TGTCCTACATTCATTCGTGA+GGG 0.611498 1_3:+73596054 None:intergenic
GATCCTTGGCAATTCACGCA+AGG 0.614349 1_3:-73597318 Msa0139770:CDS
AACTGGATTGGAACGCCAAG+TGG 0.615266 1_3:-73596933 Msa0139770:CDS
GTTGAAGTCACTAAATTCTG+AGG 0.617323 1_3:+73597571 None:intergenic
AATCCTTGCGTGAATTGCCA+AGG 0.621341 1_3:+73597315 None:intergenic
CATTTGTCCAATTGACACCT+CGG 0.622149 1_3:-73597365 Msa0139770:CDS
GTACCCTCACGAATGAATGT+AGG 0.622385 1_3:-73596057 Msa0139770:CDS
TGGGTTGAAGACCATATCAA+CGG 0.622611 1_3:+73596086 None:intergenic
TGCGTCCATAGTGACTAGGA+TGG 0.626242 1_3:+73597386 None:intergenic
ACGCAAGGATTGGTCCTTGG+GGG 0.629421 1_3:-73597303 Msa0139770:CDS
TTGAGTTATTTGGGTCCTGG+AGG 0.630319 1_3:-73597448 Msa0139770:CDS
TGGGTCCTGGAGGATTGACG+GGG 0.631061 1_3:-73597438 Msa0139770:CDS
GGGATCTTGGGTAGAAACAG+GGG 0.635116 1_3:-73596441 Msa0139770:CDS
ACCTCGGAAGGAATCAATGT+AGG 0.642821 1_3:-73597349 Msa0139770:CDS
TATGGTCTTCAACCCATTAG+GGG 0.670295 1_3:-73596079 Msa0139770:CDS
CCCGCTATAGCCGAACACGC+AGG 0.684746 1_3:-73596893 Msa0139770:CDS
GCGAGATATATTGACAGCTG+CGG 0.702124 1_3:-73597776 Msa0139770:CDS
GCAGCTGTCAATATATCTCG+CGG 0.702925 1_3:+73597778 None:intergenic
ACTGAATCGAGGTATTCAGG+AGG 0.734798 1_3:-73597167 Msa0139770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACAAAAATGTATTGTTCT+CGG + chr1_3:73596027-73596046 None:intergenic 20.0%
!!! AAGATCATTTTATTTGGAAA+TGG - chr1_3:73596980-73596999 Msa0139770:CDS 20.0%
!!! AGATCATTTTATTTGGAAAT+GGG - chr1_3:73596981-73597000 Msa0139770:CDS 20.0%
!!! ATTTTATTAGTGATTCTTTC+AGG + chr1_3:73597307-73597326 None:intergenic 20.0%
!!! TTCCATTTTTGTCTAAATTT+CGG + chr1_3:73597354-73597373 None:intergenic 20.0%
!! ATATATATATGAATCGTTTC+TGG + chr1_3:73597603-73597622 None:intergenic 20.0%
!! TAACAAAAATGTATTGTTCT+CGG + chr1_3:73596027-73596046 None:intergenic 20.0%
!!! AAGATCATTTTATTTGGAAA+TGG - chr1_3:73596980-73596999 Msa0139770:CDS 20.0%
!!! AGATCATTTTATTTGGAAAT+GGG - chr1_3:73596981-73597000 Msa0139770:CDS 20.0%
!!! ATTTTATTAGTGATTCTTTC+AGG + chr1_3:73597307-73597326 None:intergenic 20.0%
!!! TTCCATTTTTGTCTAAATTT+CGG + chr1_3:73597354-73597373 None:intergenic 20.0%
!! ATATATATATGAATCGTTTC+TGG + chr1_3:73597603-73597622 None:intergenic 20.0%
! AACAAAAATGTATTGTTCTC+GGG + chr1_3:73596026-73596045 None:intergenic 25.0%
! CATTTGATTGGAATGAAATT+TGG - chr1_3:73596074-73596093 Msa0139770:CDS 25.0%
!! ATTGGAATGAAATTTGGAAT+GGG - chr1_3:73596080-73596099 Msa0139770:CDS 25.0%
! GATCTATTACAAGATCAATT+TGG - chr1_3:73596155-73596174 Msa0139770:CDS 25.0%
! ATTACAAGATCAATTTGGAT+TGG - chr1_3:73596160-73596179 Msa0139770:CDS 25.0%
! CGTTTAGAAAATATAATTCG+AGG - chr1_3:73596191-73596210 Msa0139770:CDS 25.0%
!! GATCTAAAACTTGAGATAAT+GGG + chr1_3:73596319-73596338 None:intergenic 25.0%
! CTCTCAGAAATTTCAAAAAA+TGG + chr1_3:73596560-73596579 None:intergenic 25.0%
! ATATAGTATTCATCTCTACT+TGG + chr1_3:73596614-73596633 None:intergenic 25.0%
! AAGTAGAGATGAATACTATA+TGG - chr1_3:73596613-73596632 Msa0139770:CDS 25.0%
! CAATAGTTAGAAATTCTTGA+CGG + chr1_3:73596706-73596725 None:intergenic 25.0%
! AAGAATTTCTAACTATTGCA+TGG - chr1_3:73596708-73596727 Msa0139770:CDS 25.0%
! AGAATTTCTAACTATTGCAT+GGG - chr1_3:73596709-73596728 Msa0139770:CDS 25.0%
! CCAATAGAAAAATATTGGAA+GGG + chr1_3:73596761-73596780 None:intergenic 25.0%
! TCCAATAGAAAAATATTGGA+AGG + chr1_3:73596762-73596781 None:intergenic 25.0%
! AAGCTCCAATAGAAAAATAT+TGG + chr1_3:73596766-73596785 None:intergenic 25.0%
!! ACTGACAAGATCATTTTATT+TGG - chr1_3:73596974-73596993 Msa0139770:CDS 25.0%
! GAACGTTGATATCTAATTAA+TGG + chr1_3:73597022-73597041 None:intergenic 25.0%
! TAAAGGTAAATGCGTAAAAA+AGG - chr1_3:73597081-73597100 Msa0139770:CDS 25.0%
! AAAGGTAAATGCGTAAAAAA+GGG - chr1_3:73597082-73597101 Msa0139770:CDS 25.0%
! AAAAATGGAATTGTGATTCT+GGG - chr1_3:73597364-73597383 Msa0139770:CDS 25.0%
! AATTAAAGTAGGTGATAAAG+TGG - chr1_3:73597638-73597657 Msa0139770:CDS 25.0%
! AACAAAAATGTATTGTTCTC+GGG + chr1_3:73596026-73596045 None:intergenic 25.0%
! CATTTGATTGGAATGAAATT+TGG - chr1_3:73596074-73596093 Msa0139770:CDS 25.0%
!! ATTGGAATGAAATTTGGAAT+GGG - chr1_3:73596080-73596099 Msa0139770:CDS 25.0%
! GATCTATTACAAGATCAATT+TGG - chr1_3:73596155-73596174 Msa0139770:CDS 25.0%
! ATTACAAGATCAATTTGGAT+TGG - chr1_3:73596160-73596179 Msa0139770:CDS 25.0%
! CGTTTAGAAAATATAATTCG+AGG - chr1_3:73596191-73596210 Msa0139770:CDS 25.0%
!! GATCTAAAACTTGAGATAAT+GGG + chr1_3:73596319-73596338 None:intergenic 25.0%
! CTCTCAGAAATTTCAAAAAA+TGG + chr1_3:73596560-73596579 None:intergenic 25.0%
! ATATAGTATTCATCTCTACT+TGG + chr1_3:73596614-73596633 None:intergenic 25.0%
! AAGTAGAGATGAATACTATA+TGG - chr1_3:73596613-73596632 Msa0139770:CDS 25.0%
! CAATAGTTAGAAATTCTTGA+CGG + chr1_3:73596706-73596725 None:intergenic 25.0%
! AAGAATTTCTAACTATTGCA+TGG - chr1_3:73596708-73596727 Msa0139770:CDS 25.0%
! AGAATTTCTAACTATTGCAT+GGG - chr1_3:73596709-73596728 Msa0139770:CDS 25.0%
! CCAATAGAAAAATATTGGAA+GGG + chr1_3:73596761-73596780 None:intergenic 25.0%
! TCCAATAGAAAAATATTGGA+AGG + chr1_3:73596762-73596781 None:intergenic 25.0%
! AAGCTCCAATAGAAAAATAT+TGG + chr1_3:73596766-73596785 None:intergenic 25.0%
!! ACTGACAAGATCATTTTATT+TGG - chr1_3:73596974-73596993 Msa0139770:CDS 25.0%
! GAACGTTGATATCTAATTAA+TGG + chr1_3:73597022-73597041 None:intergenic 25.0%
! TAAAGGTAAATGCGTAAAAA+AGG - chr1_3:73597081-73597100 Msa0139770:CDS 25.0%
! AAAGGTAAATGCGTAAAAAA+GGG - chr1_3:73597082-73597101 Msa0139770:CDS 25.0%
! AAAAATGGAATTGTGATTCT+GGG - chr1_3:73597364-73597383 Msa0139770:CDS 25.0%
! AATTAAAGTAGGTGATAAAG+TGG - chr1_3:73597638-73597657 Msa0139770:CDS 25.0%
GTATATCAATGTTCAGTCTT+CGG + chr1_3:73596004-73596023 None:intergenic 30.0%
GATTGGAATGAAATTTGGAA+TGG - chr1_3:73596079-73596098 Msa0139770:CDS 30.0%
ATCTTGTAATAGATCTGCTA+CGG + chr1_3:73596150-73596169 None:intergenic 30.0%
ATAATTCGAGGAACTATATC+TGG - chr1_3:73596203-73596222 Msa0139770:intron 30.0%
GATTCATAAGTGGTTGTTAA+TGG + chr1_3:73596281-73596300 None:intergenic 30.0%
!!! ACCACTTATGAATCGTTTTT+TGG - chr1_3:73596287-73596306 Msa0139770:intron 30.0%
TCCAAAAAACGATTCATAAG+TGG + chr1_3:73596291-73596310 None:intergenic 30.0%
! CGATCTAAAACTTGAGATAA+TGG + chr1_3:73596320-73596339 None:intergenic 30.0%
! TTTTCTCCCATGAACTATTT+GGG + chr1_3:73596357-73596376 None:intergenic 30.0%
! ATTTTCTCCCATGAACTATT+TGG + chr1_3:73596358-73596377 None:intergenic 30.0%
TGGGAGAAAATTGAGTTATT+TGG - chr1_3:73596367-73596386 Msa0139770:CDS 30.0%
GGGAGAAAATTGAGTTATTT+GGG - chr1_3:73596368-73596387 Msa0139770:CDS 30.0%
!!! AATTTTTTAGCACTGAATCG+AGG - chr1_3:73596647-73596666 Msa0139770:CDS 30.0%
! CCCTTCCAATATTTTTCTAT+TGG - chr1_3:73596758-73596777 Msa0139770:CDS 30.0%
!! ATGCATGCAAGTATTTTTGT+TGG + chr1_3:73597044-73597063 None:intergenic 30.0%
TATTAGTAGCTTATATGCCA+TGG - chr1_3:73597164-73597183 Msa0139770:CDS 30.0%
ATTAGTAGCTTATATGCCAT+GGG - chr1_3:73597165-73597184 Msa0139770:CDS 30.0%
GTCTAAATTTCGGAGTAAAT+GGG + chr1_3:73597344-73597363 None:intergenic 30.0%
TGTCTAAATTTCGGAGTAAA+TGG + chr1_3:73597345-73597364 None:intergenic 30.0%
CTCCGAAATTTAGACAAAAA+TGG - chr1_3:73597349-73597368 Msa0139770:CDS 30.0%
CAAAAATGGAATTGTGATTC+TGG - chr1_3:73597363-73597382 Msa0139770:CDS 30.0%
AGATTATTACGAGCTATACT+TGG - chr1_3:73597469-73597488 Msa0139770:CDS 30.0%
GATTATTACGAGCTATACTT+GGG - chr1_3:73597470-73597489 Msa0139770:CDS 30.0%
! ACTTGTCTAAAACTACCTAT+AGG - chr1_3:73597516-73597535 Msa0139770:CDS 30.0%
CAGAAACGTGAAATTAAAGT+AGG - chr1_3:73597627-73597646 Msa0139770:CDS 30.0%
! TTCAAAGATTTTGTCTAGAC+AGG - chr1_3:73597689-73597708 Msa0139770:CDS 30.0%
AATGAATGTAGGACAGATAT+TGG - chr1_3:73597779-73597798 Msa0139770:CDS 30.0%
GTATATCAATGTTCAGTCTT+CGG + chr1_3:73596004-73596023 None:intergenic 30.0%
GATTGGAATGAAATTTGGAA+TGG - chr1_3:73596079-73596098 Msa0139770:CDS 30.0%
ATCTTGTAATAGATCTGCTA+CGG + chr1_3:73596150-73596169 None:intergenic 30.0%
ATAATTCGAGGAACTATATC+TGG - chr1_3:73596203-73596222 Msa0139770:intron 30.0%
GATTCATAAGTGGTTGTTAA+TGG + chr1_3:73596281-73596300 None:intergenic 30.0%
!!! ACCACTTATGAATCGTTTTT+TGG - chr1_3:73596287-73596306 Msa0139770:intron 30.0%
TCCAAAAAACGATTCATAAG+TGG + chr1_3:73596291-73596310 None:intergenic 30.0%
! CGATCTAAAACTTGAGATAA+TGG + chr1_3:73596320-73596339 None:intergenic 30.0%
! TTTTCTCCCATGAACTATTT+GGG + chr1_3:73596357-73596376 None:intergenic 30.0%
! ATTTTCTCCCATGAACTATT+TGG + chr1_3:73596358-73596377 None:intergenic 30.0%
TGGGAGAAAATTGAGTTATT+TGG - chr1_3:73596367-73596386 Msa0139770:CDS 30.0%
GGGAGAAAATTGAGTTATTT+GGG - chr1_3:73596368-73596387 Msa0139770:CDS 30.0%
!!! AATTTTTTAGCACTGAATCG+AGG - chr1_3:73596647-73596666 Msa0139770:CDS 30.0%
! CCCTTCCAATATTTTTCTAT+TGG - chr1_3:73596758-73596777 Msa0139770:CDS 30.0%
!! ATGCATGCAAGTATTTTTGT+TGG + chr1_3:73597044-73597063 None:intergenic 30.0%
TATTAGTAGCTTATATGCCA+TGG - chr1_3:73597164-73597183 Msa0139770:CDS 30.0%
ATTAGTAGCTTATATGCCAT+GGG - chr1_3:73597165-73597184 Msa0139770:CDS 30.0%
GTCTAAATTTCGGAGTAAAT+GGG + chr1_3:73597344-73597363 None:intergenic 30.0%
TGTCTAAATTTCGGAGTAAA+TGG + chr1_3:73597345-73597364 None:intergenic 30.0%
CTCCGAAATTTAGACAAAAA+TGG - chr1_3:73597349-73597368 Msa0139770:CDS 30.0%
CAAAAATGGAATTGTGATTC+TGG - chr1_3:73597363-73597382 Msa0139770:CDS 30.0%
AGATTATTACGAGCTATACT+TGG - chr1_3:73597469-73597488 Msa0139770:CDS 30.0%
GATTATTACGAGCTATACTT+GGG - chr1_3:73597470-73597489 Msa0139770:CDS 30.0%
! ACTTGTCTAAAACTACCTAT+AGG - chr1_3:73597516-73597535 Msa0139770:CDS 30.0%
CAGAAACGTGAAATTAAAGT+AGG - chr1_3:73597627-73597646 Msa0139770:CDS 30.0%
! TTCAAAGATTTTGTCTAGAC+AGG - chr1_3:73597689-73597708 Msa0139770:CDS 30.0%
AATGAATGTAGGACAGATAT+TGG - chr1_3:73597779-73597798 Msa0139770:CDS 30.0%
GTTGAAGTCACTAAATTCTG+AGG + chr1_3:73596257-73596276 None:intergenic 35.0%
AACTATTTGGGTCAATGGAT+TGG + chr1_3:73596345-73596364 None:intergenic 35.0%
CATTGACCCAAATAGTTCAT+GGG - chr1_3:73596348-73596367 Msa0139770:intron 35.0%
AAATTGAGTTATTTGGGTCC+TGG - chr1_3:73596374-73596393 Msa0139770:CDS 35.0%
GGAATCAATGTAGGACTTAT+TGG - chr1_3:73596485-73596504 Msa0139770:CDS 35.0%
! TGAATACTATATGGTAGCGA+CGG - chr1_3:73596622-73596641 Msa0139770:CDS 35.0%
ATGCTCGATAAAAGGAATCA+GGG + chr1_3:73596789-73596808 None:intergenic 35.0%
TATGCTCGATAAAAGGAATC+AGG + chr1_3:73596790-73596809 None:intergenic 35.0%
GCATCATTATGCTCGATAAA+AGG + chr1_3:73596797-73596816 None:intergenic 35.0%
! AGTTCCAACAATGCACTTTT+CGG + chr1_3:73596876-73596895 None:intergenic 35.0%
CAAAAATCCCAGGTTCATAA+AGG - chr1_3:73597064-73597083 Msa0139770:CDS 35.0%
GCATTTACCTTTATGAACCT+GGG + chr1_3:73597074-73597093 None:intergenic 35.0%
!! AAGGGACAAATTTTAGCAGA+TGG - chr1_3:73597100-73597119 Msa0139770:CDS 35.0%
!! AATTGTGATTCTGGGATCTT+GGG - chr1_3:73597372-73597391 Msa0139770:CDS 35.0%
!! AGAAACAGGGGATATTTTAG+TGG - chr1_3:73597396-73597415 Msa0139770:CDS 35.0%
!!! GAAACAGGGGATATTTTAGT+GGG - chr1_3:73597397-73597416 Msa0139770:CDS 35.0%
GCTCGTAATAATCTATCTTC+CGG + chr1_3:73597463-73597482 None:intergenic 35.0%
!! GTTTTAGACAAGTTTCCTTG+AGG + chr1_3:73597509-73597528 None:intergenic 35.0%
! TGTCTAAAACTACCTATAGG+TGG - chr1_3:73597519-73597538 Msa0139770:CDS 35.0%
TAAAACTACCTATAGGTGGT+AGG - chr1_3:73597523-73597542 Msa0139770:CDS 35.0%
AAAACTACCTATAGGTGGTA+GGG - chr1_3:73597524-73597543 Msa0139770:CDS 35.0%
TCCATCTCACATCAATAACT+CGG + chr1_3:73597551-73597570 None:intergenic 35.0%
AGATGGATCCAAAAAAAAGC+AGG - chr1_3:73597564-73597583 Msa0139770:CDS 35.0%
!!! AGCTAGAACCTGCTTTTTTT+TGG + chr1_3:73597575-73597594 None:intergenic 35.0%
!! GATATGCCTTATTTGCAAGA+TGG - chr1_3:73597711-73597730 Msa0139770:CDS 35.0%
ATATGGTCTTCAACCCATTA+GGG - chr1_3:73597745-73597764 Msa0139770:CDS 35.0%
CAGATATTGGAATGTTCACT+CGG - chr1_3:73597792-73597811 Msa0139770:CDS 35.0%
GTTGAAGTCACTAAATTCTG+AGG + chr1_3:73596257-73596276 None:intergenic 35.0%
AACTATTTGGGTCAATGGAT+TGG + chr1_3:73596345-73596364 None:intergenic 35.0%
CATTGACCCAAATAGTTCAT+GGG - chr1_3:73596348-73596367 Msa0139770:intron 35.0%
AAATTGAGTTATTTGGGTCC+TGG - chr1_3:73596374-73596393 Msa0139770:CDS 35.0%
GGAATCAATGTAGGACTTAT+TGG - chr1_3:73596485-73596504 Msa0139770:CDS 35.0%
! TGAATACTATATGGTAGCGA+CGG - chr1_3:73596622-73596641 Msa0139770:CDS 35.0%
ATGCTCGATAAAAGGAATCA+GGG + chr1_3:73596789-73596808 None:intergenic 35.0%
TATGCTCGATAAAAGGAATC+AGG + chr1_3:73596790-73596809 None:intergenic 35.0%
GCATCATTATGCTCGATAAA+AGG + chr1_3:73596797-73596816 None:intergenic 35.0%
! AGTTCCAACAATGCACTTTT+CGG + chr1_3:73596876-73596895 None:intergenic 35.0%
CAAAAATCCCAGGTTCATAA+AGG - chr1_3:73597064-73597083 Msa0139770:CDS 35.0%
GCATTTACCTTTATGAACCT+GGG + chr1_3:73597074-73597093 None:intergenic 35.0%
!! AAGGGACAAATTTTAGCAGA+TGG - chr1_3:73597100-73597119 Msa0139770:CDS 35.0%
!! AATTGTGATTCTGGGATCTT+GGG - chr1_3:73597372-73597391 Msa0139770:CDS 35.0%
!! AGAAACAGGGGATATTTTAG+TGG - chr1_3:73597396-73597415 Msa0139770:CDS 35.0%
!!! GAAACAGGGGATATTTTAGT+GGG - chr1_3:73597397-73597416 Msa0139770:CDS 35.0%
GCTCGTAATAATCTATCTTC+CGG + chr1_3:73597463-73597482 None:intergenic 35.0%
!! GTTTTAGACAAGTTTCCTTG+AGG + chr1_3:73597509-73597528 None:intergenic 35.0%
! TGTCTAAAACTACCTATAGG+TGG - chr1_3:73597519-73597538 Msa0139770:CDS 35.0%
TAAAACTACCTATAGGTGGT+AGG - chr1_3:73597523-73597542 Msa0139770:CDS 35.0%
AAAACTACCTATAGGTGGTA+GGG - chr1_3:73597524-73597543 Msa0139770:CDS 35.0%
TCCATCTCACATCAATAACT+CGG + chr1_3:73597551-73597570 None:intergenic 35.0%
AGATGGATCCAAAAAAAAGC+AGG - chr1_3:73597564-73597583 Msa0139770:CDS 35.0%
!!! AGCTAGAACCTGCTTTTTTT+TGG + chr1_3:73597575-73597594 None:intergenic 35.0%
!! GATATGCCTTATTTGCAAGA+TGG - chr1_3:73597711-73597730 Msa0139770:CDS 35.0%
ATATGGTCTTCAACCCATTA+GGG - chr1_3:73597745-73597764 Msa0139770:CDS 35.0%
CAGATATTGGAATGTTCACT+CGG - chr1_3:73597792-73597811 Msa0139770:CDS 35.0%
! GTCACTAAATTCTGAGGAGT+AGG + chr1_3:73596251-73596270 None:intergenic 40.0%
CCATGAACTATTTGGGTCAA+TGG + chr1_3:73596350-73596369 None:intergenic 40.0%
CCATTGACCCAAATAGTTCA+TGG - chr1_3:73596347-73596366 Msa0139770:intron 40.0%
!!! GAACTGCTAGTTTTCGGATA+CGG - chr1_3:73596411-73596430 Msa0139770:CDS 40.0%
!!! AACTGCTAGTTTTCGGATAC+GGG - chr1_3:73596412-73596431 Msa0139770:CDS 40.0%
GATATCCATCCTAGTCACTA+TGG - chr1_3:73596434-73596453 Msa0139770:CDS 40.0%
CATTTGTCCAATTGACACCT+CGG - chr1_3:73596460-73596479 Msa0139770:CDS 40.0%
TGTAGGACTTATTGGATCCT+TGG - chr1_3:73596493-73596512 Msa0139770:CDS 40.0%
! GAATACTATATGGTAGCGAC+GGG - chr1_3:73596623-73596642 Msa0139770:CDS 40.0%
TCTAACTATTGCATGGGAAC+AGG - chr1_3:73596715-73596734 Msa0139770:CDS 40.0%
! GAAAAGTGCATTGTTGGAAC+TGG - chr1_3:73596875-73596894 Msa0139770:CDS 40.0%
TTGCATGCATCAAAAATCCC+AGG - chr1_3:73597054-73597073 Msa0139770:CDS 40.0%
CGCATTTACCTTTATGAACC+TGG + chr1_3:73597075-73597094 None:intergenic 40.0%
TCAGAATTGTAACCTTCCCA+TGG + chr1_3:73597184-73597203 None:intergenic 40.0%
TGTACTCATTAGTGAACGTC+TGG - chr1_3:73597210-73597229 Msa0139770:CDS 40.0%
TAGTGATTCTTTCAGGACCA+TGG + chr1_3:73597300-73597319 None:intergenic 40.0%
! AGTAAATGGGCTTCTAGATG+TGG + chr1_3:73597331-73597350 None:intergenic 40.0%
!! GAATTGTGATTCTGGGATCT+TGG - chr1_3:73597371-73597390 Msa0139770:CDS 40.0%
GGGTAAATTAACGCCTCAAA+TGG - chr1_3:73597417-73597436 Msa0139770:CDS 40.0%
TAATCTATCTTCCGGAGCAT+AGG + chr1_3:73597455-73597474 None:intergenic 40.0%
AAACTACCTATAGGTGGTAG+GGG - chr1_3:73597525-73597544 Msa0139770:CDS 40.0%
AAAGTAGGTGATAAAGTGGC+CGG - chr1_3:73597642-73597661 Msa0139770:CDS 40.0%
! ACCTTTATTTCCATGTCTCC+CGG + chr1_3:73597664-73597683 None:intergenic 40.0%
GGTCTTCCATCTTGCAAATA+AGG + chr1_3:73597720-73597739 None:intergenic 40.0%
! TGGGTTGAAGACCATATCAA+CGG + chr1_3:73597742-73597761 None:intergenic 40.0%
GATATGGTCTTCAACCCATT+AGG - chr1_3:73597744-73597763 Msa0139770:CDS 40.0%
TATGGTCTTCAACCCATTAG+GGG - chr1_3:73597746-73597765 Msa0139770:CDS 40.0%
TGTCCTACATTCATTCGTGA+GGG + chr1_3:73597774-73597793 None:intergenic 40.0%
!! AATGTTCACTCGGATTAGCT+GGG - chr1_3:73597802-73597821 Msa0139770:CDS 40.0%
! GTCACTAAATTCTGAGGAGT+AGG + chr1_3:73596251-73596270 None:intergenic 40.0%
CCATGAACTATTTGGGTCAA+TGG + chr1_3:73596350-73596369 None:intergenic 40.0%
CCATTGACCCAAATAGTTCA+TGG - chr1_3:73596347-73596366 Msa0139770:intron 40.0%
!!! GAACTGCTAGTTTTCGGATA+CGG - chr1_3:73596411-73596430 Msa0139770:CDS 40.0%
!!! AACTGCTAGTTTTCGGATAC+GGG - chr1_3:73596412-73596431 Msa0139770:CDS 40.0%
GATATCCATCCTAGTCACTA+TGG - chr1_3:73596434-73596453 Msa0139770:CDS 40.0%
CATTTGTCCAATTGACACCT+CGG - chr1_3:73596460-73596479 Msa0139770:CDS 40.0%
TGTAGGACTTATTGGATCCT+TGG - chr1_3:73596493-73596512 Msa0139770:CDS 40.0%
! GAATACTATATGGTAGCGAC+GGG - chr1_3:73596623-73596642 Msa0139770:CDS 40.0%
TCTAACTATTGCATGGGAAC+AGG - chr1_3:73596715-73596734 Msa0139770:CDS 40.0%
! GAAAAGTGCATTGTTGGAAC+TGG - chr1_3:73596875-73596894 Msa0139770:CDS 40.0%
TTGCATGCATCAAAAATCCC+AGG - chr1_3:73597054-73597073 Msa0139770:CDS 40.0%
CGCATTTACCTTTATGAACC+TGG + chr1_3:73597075-73597094 None:intergenic 40.0%
TCAGAATTGTAACCTTCCCA+TGG + chr1_3:73597184-73597203 None:intergenic 40.0%
TGTACTCATTAGTGAACGTC+TGG - chr1_3:73597210-73597229 Msa0139770:CDS 40.0%
TAGTGATTCTTTCAGGACCA+TGG + chr1_3:73597300-73597319 None:intergenic 40.0%
! AGTAAATGGGCTTCTAGATG+TGG + chr1_3:73597331-73597350 None:intergenic 40.0%
!! GAATTGTGATTCTGGGATCT+TGG - chr1_3:73597371-73597390 Msa0139770:CDS 40.0%
GGGTAAATTAACGCCTCAAA+TGG - chr1_3:73597417-73597436 Msa0139770:CDS 40.0%
TAATCTATCTTCCGGAGCAT+AGG + chr1_3:73597455-73597474 None:intergenic 40.0%
AAACTACCTATAGGTGGTAG+GGG - chr1_3:73597525-73597544 Msa0139770:CDS 40.0%
AAAGTAGGTGATAAAGTGGC+CGG - chr1_3:73597642-73597661 Msa0139770:CDS 40.0%
! ACCTTTATTTCCATGTCTCC+CGG + chr1_3:73597664-73597683 None:intergenic 40.0%
GGTCTTCCATCTTGCAAATA+AGG + chr1_3:73597720-73597739 None:intergenic 40.0%
! TGGGTTGAAGACCATATCAA+CGG + chr1_3:73597742-73597761 None:intergenic 40.0%
GATATGGTCTTCAACCCATT+AGG - chr1_3:73597744-73597763 Msa0139770:CDS 40.0%
TATGGTCTTCAACCCATTAG+GGG - chr1_3:73597746-73597765 Msa0139770:CDS 40.0%
TGTCCTACATTCATTCGTGA+GGG + chr1_3:73597774-73597793 None:intergenic 40.0%
!! AATGTTCACTCGGATTAGCT+GGG - chr1_3:73597802-73597821 Msa0139770:CDS 40.0%
GCAGCTGTCAATATATCTCG+CGG + chr1_3:73596050-73596069 None:intergenic 45.0%
GCGAGATATATTGACAGCTG+CGG - chr1_3:73596049-73596068 Msa0139770:CDS 45.0%
ACAGCTGCGGATCATTTGAT+TGG - chr1_3:73596062-73596081 Msa0139770:CDS 45.0%
TTGAGTTATTTGGGTCCTGG+AGG - chr1_3:73596377-73596396 Msa0139770:CDS 45.0%
CAAATGCGTCCATAGTGACT+AGG + chr1_3:73596446-73596465 None:intergenic 45.0%
! ATTCCTTCCGAGGTGTCAAT+TGG + chr1_3:73596470-73596489 None:intergenic 45.0%
ACCTCGGAAGGAATCAATGT+AGG - chr1_3:73596476-73596495 Msa0139770:CDS 45.0%
!! TCCTACATTGATTCCTTCCG+AGG + chr1_3:73596480-73596499 None:intergenic 45.0%
AATCCTTGCGTGAATTGCCA+AGG + chr1_3:73596513-73596532 None:intergenic 45.0%
TTGGCAATTCACGCAAGGAT+TGG - chr1_3:73596512-73596531 Msa0139770:CDS 45.0%
! AGCACTGAATCGAGGTATTC+AGG - chr1_3:73596655-73596674 Msa0139770:CDS 45.0%
! ACTGAATCGAGGTATTCAGG+AGG - chr1_3:73596658-73596677 Msa0139770:CDS 45.0%
! AATTCTTGACGGTATCGAGC+TGG + chr1_3:73596695-73596714 None:intergenic 45.0%
GTCAAGCAGTTCCTCTTTCT+CGG - chr1_3:73596849-73596868 Msa0139770:CDS 45.0%
GTGCATTGTTGGAACTGGAT+TGG - chr1_3:73596880-73596899 Msa0139770:CDS 45.0%
AACGATCTTTCCTGCGTGTT+CGG + chr1_3:73596945-73596964 None:intergenic 45.0%
GTAGCTTATATGCCATGGGA+AGG - chr1_3:73597169-73597188 Msa0139770:CDS 45.0%
TGGGATCTTGGGTAGAAACA+GGG - chr1_3:73597383-73597402 Msa0139770:CDS 45.0%
GAGGATTCTTTCGCCATTTG+AGG + chr1_3:73597433-73597452 None:intergenic 45.0%
GAAAGAATCCTCCTATGCTC+CGG - chr1_3:73597441-73597460 Msa0139770:CDS 45.0%
ACGAGCTATACTTGGGATTC+AGG - chr1_3:73597477-73597496 Msa0139770:CDS 45.0%
GCCGAGTTATTGATGTGAGA+TGG - chr1_3:73597547-73597566 Msa0139770:CDS 45.0%
AAGTAGGTGATAAAGTGGCC+GGG - chr1_3:73597643-73597662 Msa0139770:CDS 45.0%
AGATGGAAGACCCGTTGATA+TGG - chr1_3:73597728-73597747 Msa0139770:CDS 45.0%
GGGTTGAAGACCATATCAAC+GGG + chr1_3:73597741-73597760 None:intergenic 45.0%
GTACCCTCACGAATGAATGT+AGG - chr1_3:73597768-73597787 Msa0139770:CDS 45.0%
CTGTCCTACATTCATTCGTG+AGG + chr1_3:73597775-73597794 None:intergenic 45.0%
!! GAATGTTCACTCGGATTAGC+TGG - chr1_3:73597801-73597820 Msa0139770:CDS 45.0%
GCAGCTGTCAATATATCTCG+CGG + chr1_3:73596050-73596069 None:intergenic 45.0%
GCGAGATATATTGACAGCTG+CGG - chr1_3:73596049-73596068 Msa0139770:CDS 45.0%
ACAGCTGCGGATCATTTGAT+TGG - chr1_3:73596062-73596081 Msa0139770:CDS 45.0%
TTGAGTTATTTGGGTCCTGG+AGG - chr1_3:73596377-73596396 Msa0139770:CDS 45.0%
CAAATGCGTCCATAGTGACT+AGG + chr1_3:73596446-73596465 None:intergenic 45.0%
! ATTCCTTCCGAGGTGTCAAT+TGG + chr1_3:73596470-73596489 None:intergenic 45.0%
ACCTCGGAAGGAATCAATGT+AGG - chr1_3:73596476-73596495 Msa0139770:CDS 45.0%
!! TCCTACATTGATTCCTTCCG+AGG + chr1_3:73596480-73596499 None:intergenic 45.0%
AATCCTTGCGTGAATTGCCA+AGG + chr1_3:73596513-73596532 None:intergenic 45.0%
TTGGCAATTCACGCAAGGAT+TGG - chr1_3:73596512-73596531 Msa0139770:CDS 45.0%
! AGCACTGAATCGAGGTATTC+AGG - chr1_3:73596655-73596674 Msa0139770:CDS 45.0%
! ACTGAATCGAGGTATTCAGG+AGG - chr1_3:73596658-73596677 Msa0139770:CDS 45.0%
! AATTCTTGACGGTATCGAGC+TGG + chr1_3:73596695-73596714 None:intergenic 45.0%
GTCAAGCAGTTCCTCTTTCT+CGG - chr1_3:73596849-73596868 Msa0139770:CDS 45.0%
GTGCATTGTTGGAACTGGAT+TGG - chr1_3:73596880-73596899 Msa0139770:CDS 45.0%
AACGATCTTTCCTGCGTGTT+CGG + chr1_3:73596945-73596964 None:intergenic 45.0%
GTAGCTTATATGCCATGGGA+AGG - chr1_3:73597169-73597188 Msa0139770:CDS 45.0%
TGGGATCTTGGGTAGAAACA+GGG - chr1_3:73597383-73597402 Msa0139770:CDS 45.0%
GAGGATTCTTTCGCCATTTG+AGG + chr1_3:73597433-73597452 None:intergenic 45.0%
GAAAGAATCCTCCTATGCTC+CGG - chr1_3:73597441-73597460 Msa0139770:CDS 45.0%
ACGAGCTATACTTGGGATTC+AGG - chr1_3:73597477-73597496 Msa0139770:CDS 45.0%
GCCGAGTTATTGATGTGAGA+TGG - chr1_3:73597547-73597566 Msa0139770:CDS 45.0%
AAGTAGGTGATAAAGTGGCC+GGG - chr1_3:73597643-73597662 Msa0139770:CDS 45.0%
AGATGGAAGACCCGTTGATA+TGG - chr1_3:73597728-73597747 Msa0139770:CDS 45.0%
GGGTTGAAGACCATATCAAC+GGG + chr1_3:73597741-73597760 None:intergenic 45.0%
GTACCCTCACGAATGAATGT+AGG - chr1_3:73597768-73597787 Msa0139770:CDS 45.0%
CTGTCCTACATTCATTCGTG+AGG + chr1_3:73597775-73597794 None:intergenic 45.0%
!! GAATGTTCACTCGGATTAGC+TGG - chr1_3:73597801-73597820 Msa0139770:CDS 45.0%
TTTGGGTCCTGGAGGATTGA+CGG - chr1_3:73596385-73596404 Msa0139770:CDS 50.0%
TGCGTCCATAGTGACTAGGA+TGG + chr1_3:73596442-73596461 None:intergenic 50.0%
TGTCCAATTGACACCTCGGA+AGG - chr1_3:73596464-73596483 Msa0139770:CDS 50.0%
GATCCTTGGCAATTCACGCA+AGG - chr1_3:73596507-73596526 Msa0139770:CDS 50.0%
!! TTCACGCAAGGATTGGTCCT+TGG - chr1_3:73596519-73596538 Msa0139770:CDS 50.0%
!! TCACGCAAGGATTGGTCCTT+GGG - chr1_3:73596520-73596539 Msa0139770:CDS 50.0%
GGACTTTCTATAGACCCCCA+AGG + chr1_3:73596539-73596558 None:intergenic 50.0%
! CACTTTTCGGACCGAGAAAG+AGG + chr1_3:73596863-73596882 None:intergenic 50.0%
! CGGTCCGAAAAGTGCATTGT+TGG - chr1_3:73596869-73596888 Msa0139770:CDS 50.0%
! AACTGGATTGGAACGCCAAG+TGG - chr1_3:73596892-73596911 Msa0139770:CDS 50.0%
! CTCCTGAATCTAAGGCCACT+TGG + chr1_3:73596910-73596929 None:intergenic 50.0%
AGCGGGAACTCCTGAATCTA+AGG + chr1_3:73596918-73596937 None:intergenic 50.0%
CAGACTCATGTGACAAGCCA+TGG - chr1_3:73597280-73597299 Msa0139770:CDS 50.0%
CTGGGATCTTGGGTAGAAAC+AGG - chr1_3:73597382-73597401 Msa0139770:CDS 50.0%
GGGATCTTGGGTAGAAACAG+GGG - chr1_3:73597384-73597403 Msa0139770:CDS 50.0%
TCTATCTTCCGGAGCATAGG+AGG + chr1_3:73597452-73597471 None:intergenic 50.0%
!! GGATTCAGGTATCGACCTCA+AGG - chr1_3:73597491-73597510 Msa0139770:CDS 50.0%
GCCGGGAGACATGGAAATAA+AGG - chr1_3:73597660-73597679 Msa0139770:CDS 50.0%
!! TTCGTGAGGGTACCCCTAAT+GGG + chr1_3:73597761-73597780 None:intergenic 50.0%
!! ATTCGTGAGGGTACCCCTAA+TGG + chr1_3:73597762-73597781 None:intergenic 50.0%
TTTGGGTCCTGGAGGATTGA+CGG - chr1_3:73596385-73596404 Msa0139770:CDS 50.0%
TGCGTCCATAGTGACTAGGA+TGG + chr1_3:73596442-73596461 None:intergenic 50.0%
TGTCCAATTGACACCTCGGA+AGG - chr1_3:73596464-73596483 Msa0139770:CDS 50.0%
GATCCTTGGCAATTCACGCA+AGG - chr1_3:73596507-73596526 Msa0139770:CDS 50.0%
!! TTCACGCAAGGATTGGTCCT+TGG - chr1_3:73596519-73596538 Msa0139770:CDS 50.0%
!! TCACGCAAGGATTGGTCCTT+GGG - chr1_3:73596520-73596539 Msa0139770:CDS 50.0%
GGACTTTCTATAGACCCCCA+AGG + chr1_3:73596539-73596558 None:intergenic 50.0%
! CACTTTTCGGACCGAGAAAG+AGG + chr1_3:73596863-73596882 None:intergenic 50.0%
! CGGTCCGAAAAGTGCATTGT+TGG - chr1_3:73596869-73596888 Msa0139770:CDS 50.0%
! AACTGGATTGGAACGCCAAG+TGG - chr1_3:73596892-73596911 Msa0139770:CDS 50.0%
! CTCCTGAATCTAAGGCCACT+TGG + chr1_3:73596910-73596929 None:intergenic 50.0%
AGCGGGAACTCCTGAATCTA+AGG + chr1_3:73596918-73596937 None:intergenic 50.0%
CAGACTCATGTGACAAGCCA+TGG - chr1_3:73597280-73597299 Msa0139770:CDS 50.0%
CTGGGATCTTGGGTAGAAAC+AGG - chr1_3:73597382-73597401 Msa0139770:CDS 50.0%
GGGATCTTGGGTAGAAACAG+GGG - chr1_3:73597384-73597403 Msa0139770:CDS 50.0%
TCTATCTTCCGGAGCATAGG+AGG + chr1_3:73597452-73597471 None:intergenic 50.0%
!! GGATTCAGGTATCGACCTCA+AGG - chr1_3:73597491-73597510 Msa0139770:CDS 50.0%
GCCGGGAGACATGGAAATAA+AGG - chr1_3:73597660-73597679 Msa0139770:CDS 50.0%
!! TTCGTGAGGGTACCCCTAAT+GGG + chr1_3:73597761-73597780 None:intergenic 50.0%
!! ATTCGTGAGGGTACCCCTAA+TGG + chr1_3:73597762-73597781 None:intergenic 50.0%
TTGGGTCCTGGAGGATTGAC+GGG - chr1_3:73596386-73596405 Msa0139770:CDS 55.0%
!!! CGGGGCGAACTGCTAGTTTT+CGG - chr1_3:73596405-73596424 Msa0139770:CDS 55.0%
!! CACGCAAGGATTGGTCCTTG+GGG - chr1_3:73596521-73596540 Msa0139770:CDS 55.0%
!! ACGCAAGGATTGGTCCTTGG+GGG - chr1_3:73596522-73596541 Msa0139770:CDS 55.0%
! CGCCAAGTGGCCTTAGATTC+AGG - chr1_3:73596905-73596924 Msa0139770:CDS 55.0%
TCCTGCGTGTTCGGCTATAG+CGG + chr1_3:73596936-73596955 None:intergenic 55.0%
!! GCAGATGGTGCTGCTACTGT+TGG - chr1_3:73597115-73597134 Msa0139770:CDS 55.0%
!! GATGGTGCTGCTACTGTTGG+CGG - chr1_3:73597118-73597137 Msa0139770:CDS 55.0%
TGTTGGCGGTGAACTCGCTT+TGG - chr1_3:73597132-73597151 Msa0139770:CDS 55.0%
GTTGGCGGTGAACTCGCTTT+GGG - chr1_3:73597133-73597152 Msa0139770:CDS 55.0%
GATAAAGTGGCCGGGAGACA+TGG - chr1_3:73597651-73597670 Msa0139770:CDS 55.0%
TTGGGTCCTGGAGGATTGAC+GGG - chr1_3:73596386-73596405 Msa0139770:CDS 55.0%
!!! CGGGGCGAACTGCTAGTTTT+CGG - chr1_3:73596405-73596424 Msa0139770:CDS 55.0%
!! CACGCAAGGATTGGTCCTTG+GGG - chr1_3:73596521-73596540 Msa0139770:CDS 55.0%
!! ACGCAAGGATTGGTCCTTGG+GGG - chr1_3:73596522-73596541 Msa0139770:CDS 55.0%
! CGCCAAGTGGCCTTAGATTC+AGG - chr1_3:73596905-73596924 Msa0139770:CDS 55.0%
TCCTGCGTGTTCGGCTATAG+CGG + chr1_3:73596936-73596955 None:intergenic 55.0%
!! GCAGATGGTGCTGCTACTGT+TGG - chr1_3:73597115-73597134 Msa0139770:CDS 55.0%
!! GATGGTGCTGCTACTGTTGG+CGG - chr1_3:73597118-73597137 Msa0139770:CDS 55.0%
TGTTGGCGGTGAACTCGCTT+TGG - chr1_3:73597132-73597151 Msa0139770:CDS 55.0%
GTTGGCGGTGAACTCGCTTT+GGG - chr1_3:73597133-73597152 Msa0139770:CDS 55.0%
GATAAAGTGGCCGGGAGACA+TGG - chr1_3:73597651-73597670 Msa0139770:CDS 55.0%
TGGGTCCTGGAGGATTGACG+GGG - chr1_3:73596387-73596406 Msa0139770:CDS 60.0%
CCTGCGTGTTCGGCTATAGC+GGG + chr1_3:73596935-73596954 None:intergenic 60.0%
ACTCGGCCCCTACCACCTAT+AGG + chr1_3:73597534-73597553 None:intergenic 60.0%
TGGGTCCTGGAGGATTGACG+GGG - chr1_3:73596387-73596406 Msa0139770:CDS 60.0%
CCTGCGTGTTCGGCTATAGC+GGG + chr1_3:73596935-73596954 None:intergenic 60.0%
ACTCGGCCCCTACCACCTAT+AGG + chr1_3:73597534-73597553 None:intergenic 60.0%
GTTCGCCCCGTCAATCCTCC+AGG + chr1_3:73596395-73596414 None:intergenic 65.0%
CCCGCTATAGCCGAACACGC+AGG - chr1_3:73596932-73596951 Msa0139770:CDS 65.0%
GTTCGCCCCGTCAATCCTCC+AGG + chr1_3:73596395-73596414 None:intergenic 65.0%
CCCGCTATAGCCGAACACGC+AGG - chr1_3:73596932-73596951 Msa0139770:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73595996 73597851 73595996 ID=Msa0139770;Name=Msa0139770
chr1_3 mRNA 73595996 73597851 73595996 ID=Msa0139770-mRNA-1;Parent=Msa0139770;Name=Msa0139770-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|2|0|574
chr1_3 exon 73596349 73597851 73596349 ID=Msa0139770-mRNA-1:exon:25649;Parent=Msa0139770-mRNA-1
chr1_3 exon 73595996 73596217 73595996 ID=Msa0139770-mRNA-1:exon:25648;Parent=Msa0139770-mRNA-1
chr1_3 CDS 73596349 73597851 73596349 ID=Msa0139770-mRNA-1:cds;Parent=Msa0139770-mRNA-1
chr1_3 CDS 73595996 73596217 73595996 ID=Msa0139770-mRNA-1:cds;Parent=Msa0139770-mRNA-1
Gene Sequence

>Msa0139770

ATGAACCGAAGACTGAACATTGATATACCCGAGAACAATACATTTTTGTTACCGCGAGATATATTGACAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGTATTCGTTCCGTAGCAGATCTATTACAAGATCAATTTGGATTGGCTCTCGTTCGTTTAGAAAATATAATTCGAGGAACTATATCTGGAGCAATTAGATATAAATTGATACCTACTCCTCAGAATTTAGTGACTTCAACTCCATTAACAACCACTTATGAATCGTTTTTTGGATTACACCCATTATCTCAAGTTTTAGATCGAACCAATCCATTGACCCAAATAGTTCATGGGAGAAAATTGAGTTATTTGGGTCCTGGAGGATTGACGGGGCGAACTGCTAGTTTTCGGATACGGGATATCCATCCTAGTCACTATGGACGCATTTGTCCAATTGACACCTCGGAAGGAATCAATGTAGGACTTATTGGATCCTTGGCAATTCACGCAAGGATTGGTCCTTGGGGGTCTATAGAAAGTCCATTTTTTGAAATTTCTGAGAGATCAAAACGAATACGAATGCTTTATTTATCACCAAGTAGAGATGAATACTATATGGTAGCGACGGGAAATTTTTTAGCACTGAATCGAGGTATTCAGGAGGAGCAGATTGTTCCAGCTCGATACCGTCAAGAATTTCTAACTATTGCATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTGATTCCTTTTATCGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCTCTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGATTGGAACGCCAAGTGGCCTTAGATTCAGGAGTTCCCGCTATAGCCGAACACGCAGGAAAGATCGTTTATAACGATACTGACAAGATCATTTTATTTGGAAATGGGAATGCTCTAAGTATTCCATTAATTAGATATCAACGTTCCAACAAAAATACTTGCATGCATCAAAAATCCCAGGTTCATAAAGGTAAATGCGTAAAAAAGGGACAAATTTTAGCAGATGGTGCTGCTACTGTTGGCGGTGAACTCGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCTGTACTCATTAGTGAACGTCTGGTCTATGAAGATATTTATACTTCTTTTCACATACGTAAATATGAAATTCAGACTCATGTGACAAGCCATGGTCCTGAAAGAATCACTAATAAAATTCCACATCTAGAAGCCCATTTACTCCGAAATTTAGACAAAAATGGAATTGTGATTCTGGGATCTTGGGTAGAAACAGGGGATATTTTAGTGGGTAAATTAACGCCTCAAATGGCGAAAGAATCCTCCTATGCTCCGGAAGATAGATTATTACGAGCTATACTTGGGATTCAGAAACGTGAAATTAAAGTAGGTGATAAAGTGGCCGGGAGACATGGAAATAAAGGTATCGTTTCAAAGATTTTGTCTAGACAGGATATGCCTTATTTGCAAGATGGAAGACCCGTTGATATGGTCTTCAACCCATTAGGGGTACCCTCACGAATGAATGTAGGACAGATATTGGAATGTTCACTCGGATTAGCTGGGAGTATGCTAATAGACATTATCGAATAG

Protein sequence

>Msa0139770

MNRRLNIDIPENNTFLLPRDILTAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENIIRGTISGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGPWGSIESPFFEISERSKRIRMLYLSPSRDEYYMVATGNFLALNRGIQEEQIVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHAGKIVYNDTDKIILFGNGNALSIPLIRYQRSNKNTCMHQKSQVHKGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQKREIKVGDKVAGRHGNKGIVSKILSRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQILECSLGLAGSMLIDIIE*