Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144800 | XP_003591643.1 | 99.303 | 574 | 4 | 0 | 1 | 574 | 1 | 574 | 0.0 | 1146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144800 | sp|Q05046|CH62_CUCMA | 92.389 | 565 | 43 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144800 | Q1RSH3 | 99.303 | 574 | 4 | 0 | 1 | 574 | 1 | 574 | 0.0 | 1146 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016340 | Msa0144800 | 0.996996 | 2.735481e-235 | -8.615850e-47 |
| Msa0016350 | Msa0144800 | 0.803701 | 3.074088e-49 | -8.615850e-47 |
| Msa0071760 | Msa0144800 | 0.826271 | 2.973605e-54 | -8.615850e-47 |
| Msa0144800 | Msa0144810 | 0.803825 | 2.896964e-49 | -8.615850e-47 |
| Msa0144800 | Msa0388250 | 0.803251 | 3.811540e-49 | -8.615850e-47 |
| Msa0144800 | Msa0433060 | 0.801512 | 8.694542e-49 | -8.615850e-47 |
| Msa0144800 | Msa0550490 | 0.833326 | 5.686855e-56 | -8.615850e-47 |
| Msa0144800 | Msa0602900 | 0.802702 | 4.948449e-49 | -8.615850e-47 |
| Msa0144800 | Msa0643960 | 0.806942 | 6.437006e-50 | -8.615850e-47 |
| Msa0144800 | Msa0686660 | 0.800979 | 1.117903e-48 | -8.615850e-47 |
| Msa0144800 | Msa1004780 | 0.839834 | 1.249733e-57 | -8.615850e-47 |
| Msa0144800 | Msa1085850 | 0.803602 | 3.224141e-49 | -8.615850e-47 |
| Msa0144800 | Msa1330730 | 0.817768 | 2.778472e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144800 | MtrunA17_Chr1g0196761 | 99.303 | 574 | 4 | 0 | 1 | 574 | 1 | 574 | 0.0 | 1146 |
| Msa0144800 | MtrunA17_Chr1g0196751 | 94.840 | 562 | 29 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1078 |
| Msa0144800 | MtrunA17_Chr8g0342341 | 70.833 | 576 | 166 | 2 | 1 | 574 | 1 | 576 | 0.0 | 802 |
| Msa0144800 | MtrunA17_Chr1g0152151 | 47.664 | 535 | 274 | 4 | 34 | 564 | 47 | 579 | 9.38e-168 | 489 |
| Msa0144800 | MtrunA17_Chr1g0152141 | 47.477 | 535 | 275 | 4 | 34 | 564 | 47 | 579 | 3.89e-167 | 488 |
| Msa0144800 | MtrunA17_Chr4g0028601 | 45.355 | 549 | 288 | 5 | 19 | 558 | 28 | 573 | 5.00e-158 | 464 |
| Msa0144800 | MtrunA17_Chr4g0043731 | 40.850 | 541 | 313 | 6 | 33 | 569 | 40 | 577 | 7.52e-136 | 407 |
| Msa0144800 | MtrunA17_Chr5g0421251 | 44.201 | 457 | 252 | 2 | 47 | 501 | 52 | 507 | 6.26e-135 | 402 |
| Msa0144800 | MtrunA17_Chr7g0272821 | 24.429 | 569 | 325 | 22 | 40 | 562 | 16 | 525 | 1.89e-14 | 76.3 |
| Msa0144800 | MtrunA17_Chr3g0126151 | 91.892 | 37 | 3 | 0 | 142 | 178 | 1 | 37 | 1.10e-13 | 68.6 |
| Msa0144800 | MtrunA17_Chr7g0241881 | 24.077 | 569 | 327 | 22 | 40 | 562 | 16 | 525 | 1.16e-13 | 73.6 |
| Msa0144800 | MtrunA17_Chr1g0212541 | 88.889 | 36 | 4 | 0 | 142 | 177 | 1 | 36 | 1.62e-13 | 65.5 |
| Msa0144800 | MtrunA17_Chr4g0019131 | 91.667 | 36 | 3 | 0 | 142 | 177 | 1 | 36 | 3.11e-13 | 65.5 |
| Msa0144800 | MtrunA17_Chr7g0238391 | 86.486 | 37 | 5 | 0 | 142 | 178 | 1 | 37 | 3.81e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144800 | AT3G23990.1 | 90.053 | 563 | 55 | 1 | 1 | 563 | 1 | 562 | 0.0 | 1026 |
| Msa0144800 | AT2G33210.1 | 86.702 | 564 | 75 | 0 | 1 | 564 | 1 | 564 | 0.0 | 998 |
| Msa0144800 | AT2G33210.2 | 85.993 | 564 | 74 | 1 | 1 | 564 | 1 | 559 | 0.0 | 981 |
| Msa0144800 | AT3G13860.1 | 72.826 | 552 | 147 | 2 | 22 | 572 | 21 | 570 | 0.0 | 810 |
| Msa0144800 | AT5G56500.2 | 47.731 | 551 | 283 | 3 | 28 | 574 | 46 | 595 | 8.17e-172 | 500 |
| Msa0144800 | AT5G56500.1 | 47.731 | 551 | 283 | 3 | 28 | 574 | 46 | 595 | 8.17e-172 | 500 |
| Msa0144800 | AT3G13470.1 | 46.984 | 547 | 282 | 5 | 33 | 574 | 51 | 594 | 5.28e-165 | 483 |
| Msa0144800 | AT1G55490.5 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0144800 | AT1G55490.1 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0144800 | AT1G55490.3 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0144800 | AT1G55490.4 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0144800 | AT1G55490.2 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0144800 | AT1G26230.1 | 43.284 | 536 | 298 | 4 | 33 | 564 | 39 | 572 | 6.92e-156 | 460 |
| Msa0144800 | AT1G26230.4 | 43.907 | 517 | 286 | 3 | 50 | 564 | 6 | 520 | 6.16e-155 | 456 |
| Msa0144800 | AT2G28000.1 | 44.508 | 528 | 289 | 3 | 28 | 553 | 42 | 567 | 8.90e-155 | 456 |
| Msa0144800 | AT1G26230.3 | 44.055 | 513 | 283 | 3 | 54 | 564 | 2 | 512 | 1.66e-154 | 454 |
| Msa0144800 | AT1G26230.2 | 43.008 | 472 | 264 | 3 | 33 | 500 | 39 | 509 | 4.14e-137 | 410 |
| Msa0144800 | AT5G18820.1 | 39.259 | 540 | 322 | 4 | 34 | 569 | 35 | 572 | 1.13e-122 | 374 |
| Msa0144800 | AT1G26230.5 | 43.210 | 405 | 227 | 2 | 33 | 435 | 39 | 442 | 1.34e-119 | 362 |
| Msa0144800 | AT5G18820.2 | 38.197 | 466 | 283 | 3 | 108 | 569 | 2 | 466 | 8.43e-99 | 308 |
| Msa0144800 | AT5G18820.3 | 37.995 | 379 | 234 | 1 | 34 | 412 | 35 | 412 | 1.06e-81 | 263 |
| Msa0144800 | AT5G20890.1 | 23.199 | 569 | 332 | 21 | 40 | 562 | 16 | 525 | 6.03e-13 | 72.0 |
Find 169 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGCCTTGGTTGCATTTA+AGG | 0.066385 | 1_4:-4340460 | None:intergenic |
| GGAACAATTCCTTAATATTT+TGG | 0.096358 | 1_4:-4341561 | None:intergenic |
| GAAAGATTGGCCAAGCTTTC+TGG | 0.129629 | 1_4:+4340264 | Msa0144800:CDS |
| AATTATCCAAAACGCTTTAA+AGG | 0.167858 | 1_4:+4340669 | Msa0144800:CDS |
| ATTAAGAACATACACATTTC+TGG | 0.203030 | 1_4:-4338869 | None:intergenic |
| AGAAGCAGCTTCTAGGGTTT+AGG | 0.243576 | 1_4:-4336773 | None:intergenic |
| GCGATCAAAGCCCCTGGTTT+TGG | 0.247960 | 1_4:+4339649 | Msa0144800:CDS |
| TAAGCTTCGTGCTGGAATTA+AGG | 0.250806 | 1_4:+4339519 | Msa0144800:CDS |
| CAATTCATTCCAAAATATTA+AGG | 0.253245 | 1_4:+4341552 | Msa0144800:three_prime_UTR |
| CAGGATCTCGCTGTTCTTAC+AGG | 0.260673 | 1_4:+4339694 | Msa0144800:CDS |
| CACGCCAAATTTGATCTCTT+TGG | 0.262496 | 1_4:-4337400 | None:intergenic |
| ACCTATCTTCTGATCAAAAT+TGG | 0.264660 | 1_4:-4340641 | None:intergenic |
| GAAGCAGCTTCTAGGGTTTA+GGG | 0.266480 | 1_4:-4336772 | None:intergenic |
| GGAGCATCTTTATCTTCTTT+TGG | 0.274868 | 1_4:-4341327 | None:intergenic |
| GCTGCCAAAGAGATCAAATT+TGG | 0.276119 | 1_4:+4337396 | Msa0144800:CDS |
| AACACACCTTTAAAGCGTTT+TGG | 0.279175 | 1_4:-4340675 | None:intergenic |
| CTCTAGAAGAAGCAGCTTCT+AGG | 0.310007 | 1_4:-4336780 | None:intergenic |
| GCTAATGGGGATAGAGAAAT+TGG | 0.310768 | 1_4:+4338518 | Msa0144800:CDS |
| GGCTCGTGCTTTGATGCTTA+AGG | 0.319494 | 1_4:+4337425 | Msa0144800:CDS |
| TGTTGTTGTTGGTAAACTTT+TGG | 0.322472 | 1_4:+4340921 | Msa0144800:CDS |
| AGTATTAGAGTTAGCTTTGA+AGG | 0.325433 | 1_4:+4339343 | Msa0144800:CDS |
| GATGACACTGTCATTCTTGA+TGG | 0.339637 | 1_4:+4340021 | Msa0144800:CDS |
| TTCTGGTTTGTTATGAAATA+CGG | 0.342174 | 1_4:-4338843 | None:intergenic |
| AAGAATGACAGTGTCATCTT+TGG | 0.342488 | 1_4:-4340016 | None:intergenic |
| TTGATCCATTGAAGGTGATT+AGG | 0.344579 | 1_4:+4341147 | Msa0144800:CDS |
| TGGAGGAGTTGCAGTGCTTA+AGG | 0.349238 | 1_4:+4340284 | Msa0144800:CDS |
| TCTTACCCGGGCAATATTTA+CGG | 0.358409 | 1_4:+4338246 | Msa0144800:CDS |
| ATACACATTTCTGGTTCTTC+TGG | 0.367623 | 1_4:-4338860 | None:intergenic |
| GAACAGGATAATCCTGATCT+TGG | 0.368234 | 1_4:+4340943 | Msa0144800:CDS |
| AAGGATAAAGTCAAGAATAT+TGG | 0.369421 | 1_4:+4337831 | Msa0144800:CDS |
| ATTAGGTGAATATGTTGATA+TGG | 0.372412 | 1_4:+4341109 | Msa0144800:intron |
| TTTGGGGAAAACAGGAAATC+TGG | 0.375733 | 1_4:+4339667 | Msa0144800:CDS |
| ATTGATGACTTACCGAGCTT+TGG | 0.376430 | 1_4:-4336940 | None:intergenic |
| AATGTTCGGTTCTTGCAAAA+AGG | 0.380948 | 1_4:+4339859 | Msa0144800:CDS |
| GTTGGCACAATATCTGCTAA+TGG | 0.381948 | 1_4:+4338503 | Msa0144800:CDS |
| CCTTGGATGTTCATGGTTGA+TGG | 0.385525 | 1_4:+4341717 | Msa0144800:three_prime_UTR |
| TTTCTTATTTATTTGACATA+AGG | 0.387195 | 1_4:+4341430 | Msa0144800:three_prime_UTR |
| TTGGCACAATATCTGCTAAT+GGG | 0.388899 | 1_4:+4338504 | Msa0144800:CDS |
| TGCTCCTGCCATGCCTGGTA+TGG | 0.389510 | 1_4:+4341344 | Msa0144800:CDS |
| GCTCGTGCTTTGATGCTTAA+GGG | 0.392668 | 1_4:+4337426 | Msa0144800:CDS |
| TGCTAGGAGCAACGCTAATC+AGG | 0.394183 | 1_4:+4337236 | Msa0144800:CDS |
| GGCTGAAGTTGGTGAGAAAA+AGG | 0.395231 | 1_4:+4340422 | Msa0144800:CDS |
| CTCACCAACTTCAGCCTCAC+TGG | 0.395856 | 1_4:-4340415 | None:intergenic |
| TATGTTGATATGGTTAAATC+TGG | 0.397957 | 1_4:+4341119 | Msa0144800:CDS |
| AAAGTTGATCTTGAAATGTT+CGG | 0.399954 | 1_4:+4339845 | Msa0144800:CDS |
| CACTTCTGAAGAAATTGCTC+AGG | 0.402357 | 1_4:+4338381 | Msa0144800:CDS |
| GCCCTCCTCTACAGCTGCCT+TGG | 0.403912 | 1_4:-4340472 | None:intergenic |
| CCTGAGGCGAGGTATAAATA+TGG | 0.408456 | 1_4:+4338309 | Msa0144800:CDS |
| GGCTAAGAGCATTGAATTCA+AGG | 0.411181 | 1_4:+4337812 | Msa0144800:CDS |
| CTGTAAGAACAGCGAGATCC+TGG | 0.413061 | 1_4:-4339693 | None:intergenic |
| GTAGAGGGTGCTGTTGTTGT+TGG | 0.422645 | 1_4:+4340910 | Msa0144800:CDS |
| TCATCAACCTTGGATGTTCA+TGG | 0.428807 | 1_4:+4341710 | Msa0144800:three_prime_UTR |
| TCTAGAAGAAGCAGCTTCTA+GGG | 0.431953 | 1_4:-4336779 | None:intergenic |
| TTCTTTGCCAACTTTCTCCA+TGG | 0.436356 | 1_4:-4338558 | None:intergenic |
| AAATGAGAAAATTGAATTGA+AGG | 0.437715 | 1_4:-4336872 | None:intergenic |
| TCCTCAGCAACAATCAATAA+AGG | 0.438194 | 1_4:-4339460 | None:intergenic |
| AAGATTCATGCCAAGCTCTT+CGG | 0.445204 | 1_4:-4339819 | None:intergenic |
| GATGACTTACCGAGCTTTGG+AGG | 0.447733 | 1_4:-4336937 | None:intergenic |
| TATGATGTAGTTGAAACATT+TGG | 0.448454 | 1_4:+4341515 | Msa0144800:three_prime_UTR |
| GTACATGGTGTGGTTGGAAT+TGG | 0.451052 | 1_4:-4336895 | None:intergenic |
| TGCAACCTGCTTTACAAGAC+TGG | 0.457958 | 1_4:-4337856 | None:intergenic |
| ATCCTTCCGTAAATATTGCC+CGG | 0.471871 | 1_4:-4338252 | None:intergenic |
| AATGAGTTGGAAGTTGTTGA+AGG | 0.477205 | 1_4:+4338792 | Msa0144800:CDS |
| TGCAACTCCTCCAGAAAGCT+TGG | 0.478495 | 1_4:-4340274 | None:intergenic |
| GCGGTCCTAATCACCTTCAA+TGG | 0.479235 | 1_4:-4341152 | None:intergenic |
| CCGCCTTGGTTGACGCAGCC+AGG | 0.479827 | 1_4:+4341171 | Msa0144800:CDS |
| GCCCCTAAAGTGACAAAAGA+TGG | 0.479995 | 1_4:+4337780 | Msa0144800:CDS |
| ACTGTCATTCTTGATGGATC+TGG | 0.480375 | 1_4:+4340027 | Msa0144800:CDS |
| TGTTGCATAGATTGGAAGTA+GGG | 0.486042 | 1_4:+4337353 | Msa0144800:intron |
| GCTCCTGCCATGCCTGGTAT+GGG | 0.490109 | 1_4:+4341345 | Msa0144800:CDS |
| AAGTTGGTCCTTTCACAAGA+AGG | 0.490247 | 1_4:+4341626 | Msa0144800:three_prime_UTR |
| GCGGCATCGTAACCAAGATC+AGG | 0.490844 | 1_4:-4340955 | None:intergenic |
| TGGAATAATTGATCCATTGA+AGG | 0.491715 | 1_4:+4341139 | Msa0144800:CDS |
| ATGGAGAAAGTTGGCAAAGA+AGG | 0.492043 | 1_4:+4338560 | Msa0144800:CDS |
| TTCTGATCAAAATTGGCGGT+TGG | 0.494191 | 1_4:-4340634 | None:intergenic |
| CAAGACATTGCAAAATGAGT+TGG | 0.496144 | 1_4:+4338779 | Msa0144800:CDS |
| CTTAGTTACCTTAGGACCCA+TGG | 0.497517 | 1_4:-4337481 | None:intergenic |
| AAAGATGCTCCTGCCATGCC+TGG | 0.497620 | 1_4:+4341339 | Msa0144800:CDS |
| AAACAGGAAATCTGGTCTCC+AGG | 0.499170 | 1_4:+4339675 | Msa0144800:CDS |
| TGGTGCCAGTCTTGTAAAGC+AGG | 0.499843 | 1_4:+4337851 | Msa0144800:CDS |
| AATTGAGGAAAGATGTGAGC+AGG | 0.500933 | 1_4:+4340062 | Msa0144800:CDS |
| TAAAGTAACCATGGGTCCTA+AGG | 0.503309 | 1_4:+4337473 | Msa0144800:CDS |
| GCTGCTATGAAGACTTGGAT+TGG | 0.504752 | 1_4:+4341383 | Msa0144800:exon |
| GCCTCTGTTAATTTCCAAGT+TGG | 0.505067 | 1_4:+4341610 | Msa0144800:three_prime_UTR |
| CATGCCTGGTATGGGTGGTA+TGG | 0.507454 | 1_4:+4341353 | Msa0144800:CDS |
| AATCTCTCACTATGATTACA+TGG | 0.520442 | 1_4:-4341456 | None:intergenic |
| GGATGCAAATCAGTTGCAGC+TGG | 0.520565 | 1_4:+4338271 | Msa0144800:CDS |
| CAAGGAACACTGACCTTTGG+CGG | 0.520960 | 1_4:-4340974 | None:intergenic |
| ATTGATTGTTGCTGAGGATG+TGG | 0.521979 | 1_4:+4339465 | Msa0144800:CDS |
| TTTGCTCAATCACCACGTTA+CGG | 0.522654 | 1_4:-4337749 | None:intergenic |
| TGATGAAGCAAAACGGTACA+TGG | 0.524897 | 1_4:-4336910 | None:intergenic |
| ACTTGATTTATGAAGATTGG+AGG | 0.528207 | 1_4:+4340390 | Msa0144800:intron |
| TATTAGCTGCTATGAAGACT+TGG | 0.528729 | 1_4:+4341378 | Msa0144800:exon |
| GAGAGATTAAAGCTGTAGGT+AGG | 0.529683 | 1_4:+4341471 | Msa0144800:three_prime_UTR |
| TAAAACAACCTTCTTGTGAA+AGG | 0.530385 | 1_4:-4341634 | None:intergenic |
| GTAGAGGAGGGCATAGTACC+TGG | 0.531895 | 1_4:+4340483 | Msa0144800:CDS |
| TATTTGATGCTCATCAACCT+TGG | 0.534231 | 1_4:+4341700 | Msa0144800:three_prime_UTR |
| CTTGTGCTACAGTTCTTACC+CGG | 0.535613 | 1_4:+4338233 | Msa0144800:CDS |
| GAAGGTGATTAGGACCGCCT+TGG | 0.537650 | 1_4:+4341157 | Msa0144800:CDS |
| ACCATCACCAGCCACATCAT+TGG | 0.538003 | 1_4:-4337886 | None:intergenic |
| ACCTTTATTGATTGTTGCTG+AGG | 0.539398 | 1_4:+4339459 | Msa0144800:CDS |
| ATTCTAAATAAGCTTCGTGC+TGG | 0.540824 | 1_4:+4339511 | Msa0144800:CDS |
| TGCAACCAAGGCAGCTGTAG+AGG | 0.541405 | 1_4:+4340467 | Msa0144800:CDS |
| CAGCTTATCACCGAAGAGCT+TGG | 0.542247 | 1_4:+4339809 | Msa0144800:intron |
| ATTTAGAATAAGAGTTGCAA+GGG | 0.543816 | 1_4:-4339497 | None:intergenic |
| GCAAAAGCCATGGAGAAAGT+TGG | 0.544162 | 1_4:+4338551 | Msa0144800:CDS |
| GCATCAAATGCTGGAGTAGA+GGG | 0.546345 | 1_4:+4340895 | Msa0144800:CDS |
| ATTGTTTGCAAGAGTAATTG+TGG | 0.548762 | 1_4:+4341752 | Msa0144800:three_prime_UTR |
| GTGTTGCATAGATTGGAAGT+AGG | 0.549231 | 1_4:+4337352 | Msa0144800:intron |
| TATTTAGAATAAGAGTTGCA+AGG | 0.553538 | 1_4:-4339498 | None:intergenic |
| CATACAATTGCATCAAATGC+TGG | 0.554740 | 1_4:+4340886 | Msa0144800:CDS |
| TGCATCAAATGCTGGAGTAG+AGG | 0.557397 | 1_4:+4340894 | Msa0144800:CDS |
| TTCTTGTGAAAGGACCAACT+TGG | 0.557473 | 1_4:-4341624 | None:intergenic |
| TTTAGTTGACAGTTTATGAA+GGG | 0.558069 | 1_4:-4341582 | None:intergenic |
| TCCTTCCGTAAATATTGCCC+GGG | 0.565365 | 1_4:-4338251 | None:intergenic |
| CCACCCATACCAGGCATGGC+AGG | 0.565885 | 1_4:-4341348 | None:intergenic |
| GTGGTGATTGAGCAAAGCTT+TGG | 0.566454 | 1_4:+4337756 | Msa0144800:CDS |
| AGATTGGAAGTAGGGTGGCA+TGG | 0.567170 | 1_4:+4337361 | Msa0144800:intron |
| CATCACTTGCCTCCAAAGCT+CGG | 0.570155 | 1_4:+4336928 | Msa0144800:CDS |
| CCTGCCATGCCTGGTATGGG+TGG | 0.574287 | 1_4:+4341348 | Msa0144800:CDS |
| TTCTCGTGGATTATAATGAG+AGG | 0.575624 | 1_4:-4339290 | None:intergenic |
| ACCAATGATGTGGCTGGTGA+TGG | 0.577314 | 1_4:+4337885 | Msa0144800:CDS |
| TGAGTTAATTGCAAAAGCCA+TGG | 0.577983 | 1_4:+4338541 | Msa0144800:CDS |
| CCATATTTATACCTCGCCTC+AGG | 0.579496 | 1_4:-4338309 | None:intergenic |
| TATCTTCTGATCAAAATTGG+CGG | 0.579635 | 1_4:-4340638 | None:intergenic |
| TGGTGATAAGAAATCAATTG+AGG | 0.584040 | 1_4:+4340047 | Msa0144800:CDS |
| TAGTGAGAGATTAAAGCTGT+AGG | 0.584980 | 1_4:+4341467 | Msa0144800:three_prime_UTR |
| AACCAAGGCAGCTGTAGAGG+AGG | 0.586821 | 1_4:+4340470 | Msa0144800:CDS |
| CTTGGTTACGATGCCGCCAA+AGG | 0.591473 | 1_4:+4340961 | Msa0144800:CDS |
| GTATGTGCGATCAAAGCCCC+TGG | 0.591861 | 1_4:+4339643 | Msa0144800:CDS |
| ATAAACTGTCAACTAAAAGA+CGG | 0.593926 | 1_4:+4341588 | Msa0144800:three_prime_UTR |
| ACCCGGGCAATATTTACGGA+AGG | 0.599417 | 1_4:+4338250 | Msa0144800:CDS |
| AGGCAAGTGATGAAGCAAAA+CGG | 0.600903 | 1_4:-4336917 | None:intergenic |
| AAAACGGTACATGGTGTGGT+TGG | 0.603014 | 1_4:-4336901 | None:intergenic |
| CCATCAACCATGAACATCCA+AGG | 0.604890 | 1_4:-4341717 | None:intergenic |
| TGAGGCAGTTAAAGTAACCA+TGG | 0.610661 | 1_4:+4337464 | Msa0144800:CDS |
| TAGTCCATACCACCCATACC+AGG | 0.615608 | 1_4:-4341357 | None:intergenic |
| GGGTGTTGAAGAACTTGCTG+AGG | 0.617007 | 1_4:+4337446 | Msa0144800:CDS |
| GGTAAGAACTGTAGCACAAG+TGG | 0.617248 | 1_4:-4338230 | None:intergenic |
| CTACCTGGCTGCGTCAACCA+AGG | 0.618790 | 1_4:-4341174 | None:intergenic |
| GGAGCCAGTGAGGCTGAAGT+TGG | 0.619289 | 1_4:+4340411 | Msa0144800:CDS |
| ACCAAGGCAGCTGTAGAGGA+GGG | 0.620345 | 1_4:+4340471 | Msa0144800:CDS |
| TGGCACAATATCTGCTAATG+GGG | 0.620505 | 1_4:+4338505 | Msa0144800:CDS |
| TTTGATGCAATTGTATGCAC+AGG | 0.621753 | 1_4:-4340880 | None:intergenic |
| GAGGCAGTTAAAGTAACCAT+GGG | 0.626223 | 1_4:+4337465 | Msa0144800:CDS |
| AATGCTACCAATGATGTGGC+TGG | 0.626483 | 1_4:+4337879 | Msa0144800:CDS |
| AATTCATCTACAGATTAGGT+CGG | 0.630754 | 1_4:+4340197 | Msa0144800:intron |
| TTTGTTACCACAGGAACTCG+AGG | 0.635926 | 1_4:+4339265 | Msa0144800:intron |
| AGAGATCAAATTTGGCGTGG+AGG | 0.637900 | 1_4:+4337404 | Msa0144800:CDS |
| AGATGCCTTAAATGCAACCA+AGG | 0.645500 | 1_4:+4340455 | Msa0144800:CDS |
| AGATTGGCCAAGCTTTCTGG+AGG | 0.646303 | 1_4:+4340267 | Msa0144800:CDS |
| TGCAGCTGGAATGAATGCAA+TGG | 0.646496 | 1_4:+4338285 | Msa0144800:CDS |
| CATACCACCCATACCAGGCA+TGG | 0.647057 | 1_4:-4341352 | None:intergenic |
| AATACGGAGAAATGTAGCCT+CGG | 0.653427 | 1_4:-4338827 | None:intergenic |
| AAGCAAAACGGTACATGGTG+TGG | 0.656782 | 1_4:-4336905 | None:intergenic |
| TTGTGCTACAGTTCTTACCC+GGG | 0.659855 | 1_4:+4338234 | Msa0144800:CDS |
| TATGAAGACTTGGATTGGAG+TGG | 0.660096 | 1_4:+4341388 | Msa0144800:three_prime_UTR |
| TGCATAGATTGGAAGTAGGG+TGG | 0.661029 | 1_4:+4337356 | Msa0144800:intron |
| CAAAGAGATCAAATTTGGCG+TGG | 0.667217 | 1_4:+4337401 | Msa0144800:CDS |
| AATGCAATGGACCTGAGGCG+AGG | 0.674402 | 1_4:+4338298 | Msa0144800:CDS |
| GAATGAATGCAATGGACCTG+AGG | 0.678991 | 1_4:+4338293 | Msa0144800:CDS |
| TGCAAATGCTACCAATGATG+TGG | 0.685010 | 1_4:+4337875 | Msa0144800:CDS |
| GATCTCGCTGTTCTTACAGG+AGG | 0.694554 | 1_4:+4339697 | Msa0144800:CDS |
| GAAGATTGGAGGAGCCAGTG+AGG | 0.699698 | 1_4:+4340401 | Msa0144800:intron |
| TAGCACTTCAGATTATGACA+AGG | 0.700368 | 1_4:+4340230 | Msa0144800:CDS |
| CCTGGCTGCGTCAACCAAGG+CGG | 0.705423 | 1_4:-4341171 | None:intergenic |
| GAAGGAATGAAGCTTGACCG+AGG | 0.708985 | 1_4:+4338810 | Msa0144800:CDS |
| ACCAACTTGGAAATTAACAG+AGG | 0.716191 | 1_4:-4341611 | None:intergenic |
| GACAAAAGATGGAGTCACTG+TGG | 0.727240 | 1_4:+4337791 | Msa0144800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAAAAACAGATATAA+AGG | - | chr1_4:4337331-4337350 | None:intergenic | 10.0% |
| !! | TTAGAAATTAAATCTAAATA+CGG | + | chr1_4:4338062-4338081 | Msa0144800:intron | 10.0% |
| !!! | TTTTTTGAAATTATTCATCT+GGG | + | chr1_4:4337028-4337047 | Msa0144800:intron | 15.0% |
| !! | TTAGAATCATTCAATATAAT+TGG | - | chr1_4:4337185-4337204 | None:intergenic | 15.0% |
| !! | TAATCATAATGTAATTAAAG+GGG | - | chr1_4:4339085-4339104 | None:intergenic | 15.0% |
| !! | GTAATCATAATGTAATTAAA+GGG | - | chr1_4:4339086-4339105 | None:intergenic | 15.0% |
| !! | TGTAATCATAATGTAATTAA+AGG | - | chr1_4:4339087-4339106 | None:intergenic | 15.0% |
| !! | ATTAAGAAAATTAGTTAAGT+AGG | - | chr1_4:4339979-4339998 | None:intergenic | 15.0% |
| !!! | TTTCTTATTTATTTGACATA+AGG | + | chr1_4:4341430-4341449 | Msa0144800:three_prime_UTR | 15.0% |
| !!! | ATCAAATAAAGATTTTAACT+TGG | - | chr1_4:4341688-4341707 | None:intergenic | 15.0% |
| !! | AAATGAGAAAATTGAATTGA+AGG | - | chr1_4:4336875-4336894 | None:intergenic | 20.0% |
| !! | GGATAATTGAAACAAAAAAA+AGG | - | chr1_4:4336974-4336993 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAAATTATTCATC+TGG | + | chr1_4:4337027-4337046 | Msa0144800:intron | 20.0% |
| !! | GTTGTTAAAATGATTGATAA+TGG | + | chr1_4:4337053-4337072 | Msa0144800:intron | 20.0% |
| !!! | AATGTAAATTTTTGTGCTTT+TGG | + | chr1_4:4337204-4337223 | Msa0144800:intron | 20.0% |
| !! | TTATTCAATCATATTTCAGA+GGG | + | chr1_4:4337618-4337637 | Msa0144800:intron | 20.0% |
| !! | CATCAACAACAATTAATAAT+GGG | - | chr1_4:4337705-4337724 | None:intergenic | 20.0% |
| !! | TCATCAACAACAATTAATAA+TGG | - | chr1_4:4337706-4337725 | None:intergenic | 20.0% |
| !! | TTCAAAAATATAATCAACCA+TGG | - | chr1_4:4337924-4337943 | None:intergenic | 20.0% |
| !!! | TTAAATTTTCACAGTTGATT+CGG | + | chr1_4:4337946-4337965 | Msa0144800:intron | 20.0% |
| !!! | TTCAAATTTTTAGAGCTAAT+AGG | + | chr1_4:4338411-4338430 | Msa0144800:intron | 20.0% |
| !!! | ATTTTTAATTTTGCAATGCT+AGG | + | chr1_4:4338481-4338500 | Msa0144800:intron | 20.0% |
| !!! | TTATATGTGTTTTTTTGACT+GGG | + | chr1_4:4338645-4338664 | Msa0144800:intron | 20.0% |
| !!! | TTGTTTTTTTCTCATTACTT+AGG | + | chr1_4:4339621-4339640 | Msa0144800:intron | 20.0% |
| !! | ATGGTAAAATGAAATCTAAT+AGG | - | chr1_4:4340101-4340120 | None:intergenic | 20.0% |
| !! | ATACATTTATCAGATATGTT+TGG | - | chr1_4:4340555-4340574 | None:intergenic | 20.0% |
| !! | AGGATATAAAAAATTTGCAT+TGG | + | chr1_4:4341195-4341214 | Msa0144800:intron | 20.0% |
| !!! | CTTAATATTTTGGAATGAAT+TGG | - | chr1_4:4341554-4341573 | None:intergenic | 20.0% |
| !! | CAATTCATTCCAAAATATTA+AGG | + | chr1_4:4341552-4341571 | Msa0144800:three_prime_UTR | 20.0% |
| !!! | TTAATTTGTGTTGCATAGAT+TGG | + | chr1_4:4337345-4337364 | Msa0144800:intron | 25.0% |
| ! | GGTTAATGTAGTAGAATAAA+AGG | + | chr1_4:4337550-4337569 | Msa0144800:intron | 25.0% |
| ! | CTTATTCAATCATATTTCAG+AGG | + | chr1_4:4337617-4337636 | Msa0144800:intron | 25.0% |
| !!! | ATTACATTTCTCCTGTTTTT+AGG | + | chr1_4:4337725-4337744 | Msa0144800:intron | 25.0% |
| !!! | TTACATTTCTCCTGTTTTTA+GGG | + | chr1_4:4337726-4337745 | Msa0144800:intron | 25.0% |
| ! | AAGGATAAAGTCAAGAATAT+TGG | + | chr1_4:4337831-4337850 | Msa0144800:CDS | 25.0% |
| ! | AAATATATACCAAAAGTCCT+TGG | - | chr1_4:4338007-4338026 | None:intergenic | 25.0% |
| !!! | TAGAGATTTGTTTTATTCCT+AGG | + | chr1_4:4338027-4338046 | Msa0144800:intron | 25.0% |
| !! | ACATTTTACATGCTGATATT+GGG | + | chr1_4:4338153-4338172 | Msa0144800:intron | 25.0% |
| ! | AATTTATACCACTCATTAGT+TGG | - | chr1_4:4338200-4338219 | None:intergenic | 25.0% |
| !! | CTAATGAGTGGTATAAATTT+TGG | + | chr1_4:4338201-4338220 | Msa0144800:intron | 25.0% |
| ! | GCAAGAATTATCATTAATCT+TGG | + | chr1_4:4338622-4338641 | Msa0144800:intron | 25.0% |
| !!! | GTTATATGTGTTTTTTTGAC+TGG | + | chr1_4:4338644-4338663 | Msa0144800:intron | 25.0% |
| ! | ATAAGTGGGAAAAAAAGAAA+AGG | - | chr1_4:4338706-4338725 | None:intergenic | 25.0% |
| !!! | TTCTGGTTTGTTATGAAATA+CGG | - | chr1_4:4338846-4338865 | None:intergenic | 25.0% |
| ! | ATTAAGAACATACACATTTC+TGG | - | chr1_4:4338872-4338891 | None:intergenic | 25.0% |
| !! | ATTTAGAATAAGAGTTGCAA+GGG | - | chr1_4:4339500-4339519 | None:intergenic | 25.0% |
| !! | TATTTAGAATAAGAGTTGCA+AGG | - | chr1_4:4339501-4339520 | None:intergenic | 25.0% |
| ! | AAAAAAGTAAACCTACAGAT+AGG | - | chr1_4:4339554-4339573 | None:intergenic | 25.0% |
| !! | AAAGTTGATCTTGAAATGTT+CGG | + | chr1_4:4339845-4339864 | Msa0144800:CDS | 25.0% |
| ! | TGAAAATTCATCTACAGATT+AGG | + | chr1_4:4340193-4340212 | Msa0144800:intron | 25.0% |
| ! | TTATGACAAGGAAAAATTAC+AGG | + | chr1_4:4340242-4340261 | Msa0144800:CDS | 25.0% |
| ! | AAAAACTTGGAATGCTTAAT+AGG | - | chr1_4:4340353-4340372 | None:intergenic | 25.0% |
| ! | ATCTTCATAAATCAAGTTTC+AGG | - | chr1_4:4340387-4340406 | None:intergenic | 25.0% |
| ! | GAAACTTGATTTATGAAGAT+TGG | + | chr1_4:4340387-4340406 | Msa0144800:intron | 25.0% |
| ! | TATCATGCTAATAATTTACC+AGG | - | chr1_4:4340504-4340523 | None:intergenic | 25.0% |
| !!! | ATAAATGTATGTTTTTGCAC+AGG | + | chr1_4:4340565-4340584 | Msa0144800:intron | 25.0% |
| !!! | TTAAAGCGTTTTGGATAATT+TGG | - | chr1_4:4340669-4340688 | None:intergenic | 25.0% |
| ! | AATTATCCAAAACGCTTTAA+AGG | + | chr1_4:4340669-4340688 | Msa0144800:CDS | 25.0% |
| ! | ATTAGGTGAATATGTTGATA+TGG | + | chr1_4:4341109-4341128 | Msa0144800:intron | 25.0% |
| ! | TATGTTGATATGGTTAAATC+TGG | + | chr1_4:4341119-4341138 | Msa0144800:CDS | 25.0% |
| !!! | CAAATTTTTTATATCCTACC+TGG | - | chr1_4:4341192-4341211 | None:intergenic | 25.0% |
| ! | ATGTTGTATGTTATATATGC+AGG | + | chr1_4:4341224-4341243 | Msa0144800:intron | 25.0% |
| ! | TATGATGTAGTTGAAACATT+TGG | + | chr1_4:4341515-4341534 | Msa0144800:three_prime_UTR | 25.0% |
| !! | GGAACAATTCCTTAATATTT+TGG | - | chr1_4:4341564-4341583 | None:intergenic | 25.0% |
| ! | TTTAGTTGACAGTTTATGAA+GGG | - | chr1_4:4341585-4341604 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGACAGTTTATGA+AGG | - | chr1_4:4341586-4341605 | None:intergenic | 25.0% |
| ! | ATAAACTGTCAACTAAAAGA+CGG | + | chr1_4:4341588-4341607 | Msa0144800:three_prime_UTR | 25.0% |
| TAGGTAATCATGAATCAACA+TGG | - | chr1_4:4337136-4337155 | None:intergenic | 30.0% | |
| ! | GAGATATATAATGATGATGC+TGG | + | chr1_4:4337572-4337591 | Msa0144800:intron | 30.0% |
| ! | CACATTTTACATGCTGATAT+TGG | + | chr1_4:4338152-4338171 | Msa0144800:intron | 30.0% |
| ! | TTAATTTTGCAATGCTAGGT+TGG | + | chr1_4:4338485-4338504 | Msa0144800:intron | 30.0% |
| ! | ATCATGTTGCATCTCAATTT+TGG | + | chr1_4:4338988-4339007 | Msa0144800:intron | 30.0% |
| TATTTATCTGTATCGTTGTC+AGG | + | chr1_4:4339165-4339184 | Msa0144800:intron | 30.0% | |
| !! | TATTTGAGATTTTCTTCTCG+TGG | - | chr1_4:4339307-4339326 | None:intergenic | 30.0% |
| !! | AGTATTAGAGTTAGCTTTGA+AGG | + | chr1_4:4339343-4339362 | Msa0144800:CDS | 30.0% |
| TGGTGATAAGAAATCAATTG+AGG | + | chr1_4:4340047-4340066 | Msa0144800:CDS | 30.0% | |
| AATTCATCTACAGATTAGGT+CGG | + | chr1_4:4340197-4340216 | Msa0144800:intron | 30.0% | |
| GGAAAAATTACAGGAAAGAT+TGG | + | chr1_4:4340251-4340270 | Msa0144800:CDS | 30.0% | |
| GGTGTTAGTTATGAAAAACT+TGG | - | chr1_4:4340366-4340385 | None:intergenic | 30.0% | |
| ACTTGATTTATGAAGATTGG+AGG | + | chr1_4:4340390-4340409 | Msa0144800:intron | 30.0% | |
| CATTTATCAGATATGTTTGG+AGG | - | chr1_4:4340552-4340571 | None:intergenic | 30.0% | |
| TATCTTCTGATCAAAATTGG+CGG | - | chr1_4:4340641-4340660 | None:intergenic | 30.0% | |
| ACCTATCTTCTGATCAAAAT+TGG | - | chr1_4:4340644-4340663 | None:intergenic | 30.0% | |
| CAGATTAAACTCTATATTGC+AGG | - | chr1_4:4340776-4340795 | None:intergenic | 30.0% | |
| ! | AATCTGTCTTTTAGACAGTA+TGG | + | chr1_4:4340790-4340809 | Msa0144800:intron | 30.0% |
| !! | TGTTGTTGTTGGTAAACTTT+TGG | + | chr1_4:4340921-4340940 | Msa0144800:CDS | 30.0% |
| AGACAAGGAAAAAGAAAACA+AGG | - | chr1_4:4340995-4341014 | None:intergenic | 30.0% | |
| !!! | CTTTTTCCTTGTCTTGTTTA+AGG | + | chr1_4:4341001-4341020 | Msa0144800:intron | 30.0% |
| !! | TTGTCAACTATTTTTCTTGC+TGG | + | chr1_4:4341080-4341099 | Msa0144800:intron | 30.0% |
| !! | TTTCTTGCTGGTTTGTAATT+AGG | + | chr1_4:4341092-4341111 | Msa0144800:intron | 30.0% |
| TGGAATAATTGATCCATTGA+AGG | + | chr1_4:4341139-4341158 | Msa0144800:CDS | 30.0% | |
| AATCTCTCACTATGATTACA+TGG | - | chr1_4:4341459-4341478 | None:intergenic | 30.0% | |
| TAAAACAACCTTCTTGTGAA+AGG | - | chr1_4:4341637-4341656 | None:intergenic | 30.0% | |
| ATTGTTTGCAAGAGTAATTG+TGG | + | chr1_4:4341752-4341771 | Msa0144800:three_prime_UTR | 30.0% | |
| !!! | GAGTTGTTTTTGAAGGGAAA+GGG | - | chr1_4:4336810-4336829 | None:intergenic | 35.0% |
| !!! | AGAGTTGTTTTTGAAGGGAA+AGG | - | chr1_4:4336811-4336830 | None:intergenic | 35.0% |
| ! | ATCCTTTTACACACTTCAGA+TGG | + | chr1_4:4336990-4337009 | Msa0144800:intron | 35.0% |
| ATCACAAAGAATACAGACGT+AGG | - | chr1_4:4337155-4337174 | None:intergenic | 35.0% | |
| ACGTCTGTATTCTTTGTGAT+TGG | + | chr1_4:4337155-4337174 | Msa0144800:intron | 35.0% | |
| TGTTGCATAGATTGGAAGTA+GGG | + | chr1_4:4337353-4337372 | Msa0144800:intron | 35.0% | |
| ! | AAGGTTTGCTTAGTTACCTT+AGG | - | chr1_4:4337492-4337511 | None:intergenic | 35.0% |
| TTAATATCTTCCAGTCCTAC+AGG | - | chr1_4:4337667-4337686 | None:intergenic | 35.0% | |
| !!! | TCCATCTTTTGTCACTTTAG+GGG | - | chr1_4:4337784-4337803 | None:intergenic | 35.0% |
| !!! | CTCCATCTTTTGTCACTTTA+GGG | - | chr1_4:4337785-4337804 | None:intergenic | 35.0% |
| !!! | ACTCCATCTTTTGTCACTTT+AGG | - | chr1_4:4337786-4337805 | None:intergenic | 35.0% |
| !! | ATGGTAAGCTGTTTTATCCA+TGG | + | chr1_4:4337904-4337923 | Msa0144800:intron | 35.0% |
| !!! | GTTGATTCGGTTTTATTCCT+AGG | + | chr1_4:4337959-4337978 | Msa0144800:intron | 35.0% |
| !!! | GTTGATTCGGTTTTATTCCA+AGG | + | chr1_4:4337987-4338006 | Msa0144800:intron | 35.0% |
| !!! | GGTTTTATTCCAAGGACTTT+TGG | + | chr1_4:4337995-4338014 | Msa0144800:intron | 35.0% |
| !!! | TTTGTTTTATTCCTAGGACG+TGG | + | chr1_4:4338033-4338052 | Msa0144800:intron | 35.0% |
| TCTAATATATACCACGTCCT+AGG | - | chr1_4:4338047-4338066 | None:intergenic | 35.0% | |
| CTAATATATACCACGTCCTA+GGG | - | chr1_4:4338046-4338065 | None:intergenic | 35.0% | |
| TCTAATATATACCACGTCCT+AGG | - | chr1_4:4338047-4338066 | None:intergenic | 35.0% | |
| !! | TGAGTGGTATAAATTTTGGC+AGG | + | chr1_4:4338205-4338224 | Msa0144800:intron | 35.0% |
| TAATAGGCATATTAGCCACA+AGG | + | chr1_4:4338427-4338446 | Msa0144800:intron | 35.0% | |
| TTGGCACAATATCTGCTAAT+GGG | + | chr1_4:4338504-4338523 | Msa0144800:CDS | 35.0% | |
| TGAGTTAATTGCAAAAGCCA+TGG | + | chr1_4:4338541-4338560 | Msa0144800:CDS | 35.0% | |
| CAAGACATTGCAAAATGAGT+TGG | + | chr1_4:4338779-4338798 | Msa0144800:CDS | 35.0% | |
| ! | AATGAGTTGGAAGTTGTTGA+AGG | + | chr1_4:4338792-4338811 | Msa0144800:CDS | 35.0% |
| !! | ATACACATTTCTGGTTCTTC+TGG | - | chr1_4:4338863-4338882 | None:intergenic | 35.0% |
| TTTCTAATGCTGCTATGTAG+AGG | - | chr1_4:4338900-4338919 | None:intergenic | 35.0% | |
| TTATCTATCCACGATAGTAG+TGG | + | chr1_4:4338962-4338981 | Msa0144800:intron | 35.0% | |
| AAAGAGCAAAACACAATGAC+TGG | - | chr1_4:4339020-4339039 | None:intergenic | 35.0% | |
| ! | AGTCATTGTGTTTTGCTCTT+TGG | + | chr1_4:4339019-4339038 | Msa0144800:intron | 35.0% |
| GTGGTAACAAATAGATGTCA+TGG | - | chr1_4:4339256-4339275 | None:intergenic | 35.0% | |
| ! | TGACATCTATTTGTTACCAC+AGG | + | chr1_4:4339256-4339275 | Msa0144800:intron | 35.0% |
| ! | TTCTCGTGGATTATAATGAG+AGG | - | chr1_4:4339293-4339312 | None:intergenic | 35.0% |
| ! | ACCTTTATTGATTGTTGCTG+AGG | + | chr1_4:4339459-4339478 | Msa0144800:CDS | 35.0% |
| TCCTCAGCAACAATCAATAA+AGG | - | chr1_4:4339463-4339482 | None:intergenic | 35.0% | |
| ATTCTAAATAAGCTTCGTGC+TGG | + | chr1_4:4339511-4339530 | Msa0144800:CDS | 35.0% | |
| !! | GGTTTGTTTTTCCTATCTGT+AGG | + | chr1_4:4339540-4339559 | Msa0144800:intron | 35.0% |
| AATGTTCGGTTCTTGCAAAA+AGG | + | chr1_4:4339859-4339878 | Msa0144800:CDS | 35.0% | |
| AAGAATGACAGTGTCATCTT+TGG | - | chr1_4:4340019-4340038 | None:intergenic | 35.0% | |
| TTACCATTGTTAGCGTATTC+TGG | + | chr1_4:4340114-4340133 | Msa0144800:intron | 35.0% | |
| AAACCAGAATACGCTAACAA+TGG | - | chr1_4:4340120-4340139 | None:intergenic | 35.0% | |
| TAGCACTTCAGATTATGACA+AGG | + | chr1_4:4340230-4340249 | Msa0144800:CDS | 35.0% | |
| !! | ATAAAAAGCATCAGCAAGCA+AGG | - | chr1_4:4340328-4340347 | None:intergenic | 35.0% |
| !! | AATGTATGTTTTTGCACAGG+TGG | + | chr1_4:4340568-4340587 | Msa0144800:intron | 35.0% |
| !! | GCCAATTTTGATCAGAAGAT+AGG | + | chr1_4:4340640-4340659 | Msa0144800:CDS | 35.0% |
| !!! | AACACACCTTTAAAGCGTTT+TGG | - | chr1_4:4340678-4340697 | None:intergenic | 35.0% |
| TTTGATGCAATTGTATGCAC+AGG | - | chr1_4:4340883-4340902 | None:intergenic | 35.0% | |
| CATACAATTGCATCAAATGC+TGG | + | chr1_4:4340886-4340905 | Msa0144800:CDS | 35.0% | |
| !!! | TGTTGGTAAACTTTTGGAAC+AGG | + | chr1_4:4340927-4340946 | Msa0144800:CDS | 35.0% |
| GAAACTCCTTAAACAAGACA+AGG | - | chr1_4:4341010-4341029 | None:intergenic | 35.0% | |
| TTGATCCATTGAAGGTGATT+AGG | + | chr1_4:4341147-4341166 | Msa0144800:CDS | 35.0% | |
| !! | GGAGCATCTTTATCTTCTTT+TGG | - | chr1_4:4341330-4341349 | None:intergenic | 35.0% |
| TATTAGCTGCTATGAAGACT+TGG | + | chr1_4:4341378-4341397 | Msa0144800:exon | 35.0% | |
| TAGTGAGAGATTAAAGCTGT+AGG | + | chr1_4:4341467-4341486 | Msa0144800:three_prime_UTR | 35.0% | |
| ACCAACTTGGAAATTAACAG+AGG | - | chr1_4:4341614-4341633 | None:intergenic | 35.0% | |
| TATTTGATGCTCATCAACCT+TGG | + | chr1_4:4341700-4341719 | Msa0144800:three_prime_UTR | 35.0% | |
| !!! | CTTCTAGGGTTTAGGGTTTT+TGG | - | chr1_4:4336768-4336787 | None:intergenic | 40.0% |
| TCTAGAAGAAGCAGCTTCTA+GGG | - | chr1_4:4336782-4336801 | None:intergenic | 40.0% | |
| !!! | GCTGCAGAGTTGTTTTTGAA+GGG | - | chr1_4:4336816-4336835 | None:intergenic | 40.0% |
| TGATGAAGCAAAACGGTACA+TGG | - | chr1_4:4336913-4336932 | None:intergenic | 40.0% | |
| AGGCAAGTGATGAAGCAAAA+CGG | - | chr1_4:4336920-4336939 | None:intergenic | 40.0% | |
| ! | ATTGATGACTTACCGAGCTT+TGG | - | chr1_4:4336943-4336962 | None:intergenic | 40.0% |
| AAAGCTCGGTAAGTCATCAA+TGG | + | chr1_4:4336942-4336961 | Msa0144800:intron | 40.0% | |
| ! | AGCCATCTGAAGTGTGTAAA+AGG | - | chr1_4:4336995-4337014 | None:intergenic | 40.0% |
| ! | TTGAGCATTGTGCATTGAGA+TGG | + | chr1_4:4337102-4337121 | Msa0144800:intron | 40.0% |
| ! | CTTTTGGATGCAGAATTGCT+AGG | + | chr1_4:4337220-4337239 | Msa0144800:intron | 40.0% |
| GTGTTGCATAGATTGGAAGT+AGG | + | chr1_4:4337352-4337371 | Msa0144800:intron | 40.0% | |
| GCTGCCAAAGAGATCAAATT+TGG | + | chr1_4:4337396-4337415 | Msa0144800:CDS | 40.0% | |
| CACGCCAAATTTGATCTCTT+TGG | - | chr1_4:4337403-4337422 | None:intergenic | 40.0% | |
| CAAAGAGATCAAATTTGGCG+TGG | + | chr1_4:4337401-4337420 | Msa0144800:CDS | 40.0% | |
| TGAGGCAGTTAAAGTAACCA+TGG | + | chr1_4:4337464-4337483 | Msa0144800:CDS | 40.0% | |
| GAGGCAGTTAAAGTAACCAT+GGG | + | chr1_4:4337465-4337484 | Msa0144800:CDS | 40.0% | |
| TAAAGTAACCATGGGTCCTA+AGG | + | chr1_4:4337473-4337492 | Msa0144800:CDS | 40.0% | |
| TTTGCTCAATCACCACGTTA+CGG | - | chr1_4:4337752-4337771 | None:intergenic | 40.0% | |
| !! | GGCTAAGAGCATTGAATTCA+AGG | + | chr1_4:4337812-4337831 | Msa0144800:CDS | 40.0% |
| TGCAAATGCTACCAATGATG+TGG | + | chr1_4:4337875-4337894 | Msa0144800:CDS | 40.0% | |
| ! | TACGGTCACATTTTACATGC+TGG | + | chr1_4:4338080-4338099 | Msa0144800:intron | 40.0% |
| !!! | TACATGCTGGTTTTATCCCT+AGG | + | chr1_4:4338093-4338112 | Msa0144800:intron | 40.0% |
| TGTTGTGACCAACTAATGAG+TGG | + | chr1_4:4338189-4338208 | Msa0144800:intron | 40.0% | |
| TCTTACCCGGGCAATATTTA+CGG | + | chr1_4:4338246-4338265 | Msa0144800:CDS | 40.0% | |
| ATCCTTCCGTAAATATTGCC+CGG | - | chr1_4:4338255-4338274 | None:intergenic | 40.0% | |
| ! | CACTTCTGAAGAAATTGCTC+AGG | + | chr1_4:4338381-4338400 | Msa0144800:CDS | 40.0% |
| GTTGGCACAATATCTGCTAA+TGG | + | chr1_4:4338503-4338522 | Msa0144800:CDS | 40.0% | |
| TGGCACAATATCTGCTAATG+GGG | + | chr1_4:4338505-4338524 | Msa0144800:CDS | 40.0% | |
| GCTAATGGGGATAGAGAAAT+TGG | + | chr1_4:4338518-4338537 | Msa0144800:CDS | 40.0% | |
| TTCTTTGCCAACTTTCTCCA+TGG | - | chr1_4:4338561-4338580 | None:intergenic | 40.0% | |
| ATGGAGAAAGTTGGCAAAGA+AGG | + | chr1_4:4338560-4338579 | Msa0144800:CDS | 40.0% | |
| ACGGCAAGATGACAATAAGT+GGG | - | chr1_4:4338720-4338739 | None:intergenic | 40.0% | |
| ATGCTGGGTTATAACGTTTC+AGG | + | chr1_4:4338752-4338771 | Msa0144800:intron | 40.0% | |
| TGGGTTATAACGTTTCAGGA+TGG | + | chr1_4:4338756-4338775 | Msa0144800:intron | 40.0% | |
| AATACGGAGAAATGTAGCCT+CGG | - | chr1_4:4338830-4338849 | None:intergenic | 40.0% | |
| ACAAAAGTCGCAACTACGAT+AGG | - | chr1_4:4339058-4339077 | None:intergenic | 40.0% | |
| TACAGACTCATGACAATGCA+TGG | - | chr1_4:4339213-4339232 | None:intergenic | 40.0% | |
| ATTGATTGTTGCTGAGGATG+TGG | + | chr1_4:4339465-4339484 | Msa0144800:CDS | 40.0% | |
| TAAGCTTCGTGCTGGAATTA+AGG | + | chr1_4:4339519-4339538 | Msa0144800:CDS | 40.0% | |
| TTTGGGGAAAACAGGAAATC+TGG | + | chr1_4:4339667-4339686 | Msa0144800:CDS | 40.0% | |
| AAGATTCATGCCAAGCTCTT+CGG | - | chr1_4:4339822-4339841 | None:intergenic | 40.0% | |
| CCAAAACTGAGCAATCATTG+AGG | - | chr1_4:4339943-4339962 | None:intergenic | 40.0% | |
| ! | CCTCAATGATTGCTCAGTTT+TGG | + | chr1_4:4339940-4339959 | Msa0144800:intron | 40.0% |
| GATGACACTGTCATTCTTGA+TGG | + | chr1_4:4340021-4340040 | Msa0144800:CDS | 40.0% | |
| ! | ACTGTCATTCTTGATGGATC+TGG | + | chr1_4:4340027-4340046 | Msa0144800:CDS | 40.0% |
| AATTGAGGAAAGATGTGAGC+AGG | + | chr1_4:4340062-4340081 | Msa0144800:CDS | 40.0% | |
| !! | AAGTTGGTGAGAAAAAGGAC+AGG | + | chr1_4:4340427-4340446 | Msa0144800:CDS | 40.0% |
| !! | AGTTGGTGAGAAAAAGGACA+GGG | + | chr1_4:4340428-4340447 | Msa0144800:CDS | 40.0% |
| AGATGCCTTAAATGCAACCA+AGG | + | chr1_4:4340455-4340474 | Msa0144800:CDS | 40.0% | |
| TTCTGATCAAAATTGGCGGT+TGG | - | chr1_4:4340637-4340656 | None:intergenic | 40.0% | |
| ATTGCAGGATTAAGCCTGAA+AGG | - | chr1_4:4340761-4340780 | None:intergenic | 40.0% | |
| GAACAGGATAATCCTGATCT+TGG | + | chr1_4:4340943-4340962 | Msa0144800:CDS | 40.0% | |
| AAACAAGGAACACTGACCTT+TGG | - | chr1_4:4340980-4340999 | None:intergenic | 40.0% | |
| ! | TATGAAGACTTGGATTGGAG+TGG | + | chr1_4:4341388-4341407 | Msa0144800:three_prime_UTR | 40.0% |
| GAGAGATTAAAGCTGTAGGT+AGG | + | chr1_4:4341471-4341490 | Msa0144800:three_prime_UTR | 40.0% | |
| GCCTCTGTTAATTTCCAAGT+TGG | + | chr1_4:4341610-4341629 | Msa0144800:three_prime_UTR | 40.0% | |
| TTCTTGTGAAAGGACCAACT+TGG | - | chr1_4:4341627-4341646 | None:intergenic | 40.0% | |
| ! | AAGTTGGTCCTTTCACAAGA+AGG | + | chr1_4:4341626-4341645 | Msa0144800:three_prime_UTR | 40.0% |
| TCATCAACCTTGGATGTTCA+TGG | + | chr1_4:4341710-4341729 | Msa0144800:three_prime_UTR | 40.0% | |
| !! | GAAGCAGCTTCTAGGGTTTA+GGG | - | chr1_4:4336775-4336794 | None:intergenic | 45.0% |
| !! | AGAAGCAGCTTCTAGGGTTT+AGG | - | chr1_4:4336776-4336795 | None:intergenic | 45.0% |
| ! | CTCTAGAAGAAGCAGCTTCT+AGG | - | chr1_4:4336783-4336802 | None:intergenic | 45.0% |
| !!! | CGCTGCAGAGTTGTTTTTGA+AGG | - | chr1_4:4336817-4336836 | None:intergenic | 45.0% |
| GTACATGGTGTGGTTGGAAT+TGG | - | chr1_4:4336898-4336917 | None:intergenic | 45.0% | |
| AAAACGGTACATGGTGTGGT+TGG | - | chr1_4:4336904-4336923 | None:intergenic | 45.0% | |
| AAGCAAAACGGTACATGGTG+TGG | - | chr1_4:4336908-4336927 | None:intergenic | 45.0% | |
| TGCATAGATTGGAAGTAGGG+TGG | + | chr1_4:4337356-4337375 | Msa0144800:intron | 45.0% | |
| AGAGATCAAATTTGGCGTGG+AGG | + | chr1_4:4337404-4337423 | Msa0144800:CDS | 45.0% | |
| GCTCGTGCTTTGATGCTTAA+GGG | + | chr1_4:4337426-4337445 | Msa0144800:CDS | 45.0% | |
| CTTAGTTACCTTAGGACCCA+TGG | - | chr1_4:4337484-4337503 | None:intergenic | 45.0% | |
| TCGCAGTGGAATGATGTCTT+TGG | + | chr1_4:4337529-4337548 | Msa0144800:intron | 45.0% | |
| ! | AGAGGGAAGAACACTAGCTT+TGG | + | chr1_4:4337635-4337654 | Msa0144800:intron | 45.0% |
| !! | TAGCTTTGGTTGTAGCCTGT+AGG | + | chr1_4:4337649-4337668 | Msa0144800:intron | 45.0% |
| GTGGTGATTGAGCAAAGCTT+TGG | + | chr1_4:4337756-4337775 | Msa0144800:CDS | 45.0% | |
| GCCCCTAAAGTGACAAAAGA+TGG | + | chr1_4:4337780-4337799 | Msa0144800:CDS | 45.0% | |
| GACAAAAGATGGAGTCACTG+TGG | + | chr1_4:4337791-4337810 | Msa0144800:CDS | 45.0% | |
| TGCAACCTGCTTTACAAGAC+TGG | - | chr1_4:4337859-4337878 | None:intergenic | 45.0% | |
| AATGCTACCAATGATGTGGC+TGG | + | chr1_4:4337879-4337898 | Msa0144800:CDS | 45.0% | |
| !!! | TCGGTTTTATTCCTAGGACG+TGG | + | chr1_4:4337965-4337984 | Msa0144800:intron | 45.0% |
| TTCCTAGGACGTGGTTGATT+CGG | + | chr1_4:4337974-4337993 | Msa0144800:intron | 45.0% | |
| GGTAAGAACTGTAGCACAAG+TGG | - | chr1_4:4338233-4338252 | None:intergenic | 45.0% | |
| CTTGTGCTACAGTTCTTACC+CGG | + | chr1_4:4338233-4338252 | Msa0144800:CDS | 45.0% | |
| TTGTGCTACAGTTCTTACCC+GGG | + | chr1_4:4338234-4338253 | Msa0144800:CDS | 45.0% | |
| TCCTTCCGTAAATATTGCCC+GGG | - | chr1_4:4338254-4338273 | None:intergenic | 45.0% | |
| TGCAGCTGGAATGAATGCAA+TGG | + | chr1_4:4338285-4338304 | Msa0144800:CDS | 45.0% | |
| GAATGAATGCAATGGACCTG+AGG | + | chr1_4:4338293-4338312 | Msa0144800:CDS | 45.0% | |
| CCATATTTATACCTCGCCTC+AGG | - | chr1_4:4338312-4338331 | None:intergenic | 45.0% | |
| CCTGAGGCGAGGTATAAATA+TGG | + | chr1_4:4338309-4338328 | Msa0144800:CDS | 45.0% | |
| ATATTAGCCACAAGGACTGC+AGG | + | chr1_4:4338435-4338454 | Msa0144800:intron | 45.0% | |
| GCAAAAGCCATGGAGAAAGT+TGG | + | chr1_4:4338551-4338570 | Msa0144800:CDS | 45.0% | |
| CACGGCAAGATGACAATAAG+TGG | - | chr1_4:4338721-4338740 | None:intergenic | 45.0% | |
| CCAGCATATCACAAAGTGCA+CGG | - | chr1_4:4338739-4338758 | None:intergenic | 45.0% | |
| CGTGCACTTTGTGATATGCT+GGG | + | chr1_4:4338737-4338756 | Msa0144800:intron | 45.0% | |
| ATGATGCTCCACTACTATCG+TGG | - | chr1_4:4338973-4338992 | None:intergenic | 45.0% | |
| TCATGACAATGCATGGAGCA+AGG | - | chr1_4:4339206-4339225 | None:intergenic | 45.0% | |
| TTTGTTACCACAGGAACTCG+AGG | + | chr1_4:4339265-4339284 | Msa0144800:intron | 45.0% | |
| ! | TCCTGTTTTCCCCAAAACCA+GGG | - | chr1_4:4339663-4339682 | None:intergenic | 45.0% |
| ! | TTCCTGTTTTCCCCAAAACC+AGG | - | chr1_4:4339664-4339683 | None:intergenic | 45.0% |
| AAACAGGAAATCTGGTCTCC+AGG | + | chr1_4:4339675-4339694 | Msa0144800:CDS | 45.0% | |
| ! | CGGTTCTTGCAAAAAGGTAC+TGG | + | chr1_4:4339865-4339884 | Msa0144800:intron | 45.0% |
| ! | GAAAGATTGGCCAAGCTTTC+TGG | + | chr1_4:4340264-4340283 | Msa0144800:CDS | 45.0% |
| !! | GGCTGAAGTTGGTGAGAAAA+AGG | + | chr1_4:4340422-4340441 | Msa0144800:CDS | 45.0% |
| AGCTGCCTTGGTTGCATTTA+AGG | - | chr1_4:4340463-4340482 | None:intergenic | 45.0% | |
| !! | GTATGTTTTTGCACAGGTGG+TGG | + | chr1_4:4340571-4340590 | Msa0144800:intron | 45.0% |
| AGCCTGAAAGGAATTGACGA+GGG | - | chr1_4:4340749-4340768 | None:intergenic | 45.0% | |
| AAGCCTGAAAGGAATTGACG+AGG | - | chr1_4:4340750-4340769 | None:intergenic | 45.0% | |
| TGCATCAAATGCTGGAGTAG+AGG | + | chr1_4:4340894-4340913 | Msa0144800:CDS | 45.0% | |
| GCATCAAATGCTGGAGTAGA+GGG | + | chr1_4:4340895-4340914 | Msa0144800:CDS | 45.0% | |
| GCTGCTATGAAGACTTGGAT+TGG | + | chr1_4:4341383-4341402 | Msa0144800:exon | 45.0% | |
| CCATCAACCATGAACATCCA+AGG | - | chr1_4:4341720-4341739 | None:intergenic | 45.0% | |
| CCTTGGATGTTCATGGTTGA+TGG | + | chr1_4:4341717-4341736 | Msa0144800:three_prime_UTR | 45.0% | |
| !! | TTAGAAATTAAATTTAAATA+CGG | + | chr1_4:4338128-4338147 | Msa0144800:intron | 5.0% |
| !!! | AAGAAAATATTAATATATTT+TGG | + | chr1_4:4339742-4339761 | Msa0144800:intron | 5.0% |
| CATCACTTGCCTCCAAAGCT+CGG | + | chr1_4:4336928-4336947 | Msa0144800:CDS | 50.0% | |
| ! | GATGACTTACCGAGCTTTGG+AGG | - | chr1_4:4336940-4336959 | None:intergenic | 50.0% |
| TGCTAGGAGCAACGCTAATC+AGG | + | chr1_4:4337236-4337255 | Msa0144800:CDS | 50.0% | |
| AGATTGGAAGTAGGGTGGCA+TGG | + | chr1_4:4337361-4337380 | Msa0144800:intron | 50.0% | |
| GGCTCGTGCTTTGATGCTTA+AGG | + | chr1_4:4337425-4337444 | Msa0144800:CDS | 50.0% | |
| !! | GGGTGTTGAAGAACTTGCTG+AGG | + | chr1_4:4337446-4337465 | Msa0144800:CDS | 50.0% |
| GAACACGTGAAGGAAACGGA+AGG | - | chr1_4:4337511-4337530 | None:intergenic | 50.0% | |
| CTGCGAACACGTGAAGGAAA+CGG | - | chr1_4:4337515-4337534 | None:intergenic | 50.0% | |
| TTTCCTTCACGTGTTCGCAG+TGG | + | chr1_4:4337515-4337534 | Msa0144800:intron | 50.0% | |
| ATTCCACTGCGAACACGTGA+AGG | - | chr1_4:4337521-4337540 | None:intergenic | 50.0% | |
| TTGGTTGTAGCCTGTAGGAC+TGG | + | chr1_4:4337654-4337673 | Msa0144800:intron | 50.0% | |
| CACGTTACGGCCCTAAAAAC+AGG | - | chr1_4:4337739-4337758 | None:intergenic | 50.0% | |
| !!! | CTGTTTTTAGGGCCGTAACG+TGG | + | chr1_4:4337737-4337756 | Msa0144800:intron | 50.0% |
| ! | TGGTGCCAGTCTTGTAAAGC+AGG | + | chr1_4:4337851-4337870 | Msa0144800:CDS | 50.0% |
| ACCAATGATGTGGCTGGTGA+TGG | + | chr1_4:4337885-4337904 | Msa0144800:CDS | 50.0% | |
| ACCATCACCAGCCACATCAT+TGG | - | chr1_4:4337889-4337908 | None:intergenic | 50.0% | |
| AACCGAATCAACCACGTCCT+AGG | - | chr1_4:4337979-4337998 | None:intergenic | 50.0% | |
| !!! | CTGGTTTTATCCCTAGGACG+TGG | + | chr1_4:4338099-4338118 | Msa0144800:intron | 50.0% |
| ACCCGGGCAATATTTACGGA+AGG | + | chr1_4:4338250-4338269 | Msa0144800:CDS | 50.0% | |
| GGATGCAAATCAGTTGCAGC+TGG | + | chr1_4:4338271-4338290 | Msa0144800:CDS | 50.0% | |
| CCGTGCACTTTGTGATATGC+TGG | + | chr1_4:4338736-4338755 | Msa0144800:intron | 50.0% | |
| GAAGGAATGAAGCTTGACCG+AGG | + | chr1_4:4338810-4338829 | Msa0144800:CDS | 50.0% | |
| !! | CGATCAAAGCCCCTGGTTTT+GGG | + | chr1_4:4339650-4339669 | Msa0144800:CDS | 50.0% |
| !!! | GATCAAAGCCCCTGGTTTTG+GGG | + | chr1_4:4339651-4339670 | Msa0144800:CDS | 50.0% |
| ! | CCTGTTTTCCCCAAAACCAG+GGG | - | chr1_4:4339662-4339681 | None:intergenic | 50.0% |
| CTGTAAGAACAGCGAGATCC+TGG | - | chr1_4:4339696-4339715 | None:intergenic | 50.0% | |
| CAGGATCTCGCTGTTCTTAC+AGG | + | chr1_4:4339694-4339713 | Msa0144800:CDS | 50.0% | |
| GATCTCGCTGTTCTTACAGG+AGG | + | chr1_4:4339697-4339716 | Msa0144800:CDS | 50.0% | |
| CAGCTTATCACCGAAGAGCT+TGG | + | chr1_4:4339809-4339828 | Msa0144800:intron | 50.0% | |
| ! | AGATTGGCCAAGCTTTCTGG+AGG | + | chr1_4:4340267-4340286 | Msa0144800:CDS | 50.0% |
| TGCAACTCCTCCAGAAAGCT+TGG | - | chr1_4:4340277-4340296 | None:intergenic | 50.0% | |
| TGGAGGAGTTGCAGTGCTTA+AGG | + | chr1_4:4340284-4340303 | Msa0144800:CDS | 50.0% | |
| CGAGGGAGGAGAATGGAATA+TGG | - | chr1_4:4340732-4340751 | None:intergenic | 50.0% | |
| GAATTGACGAGGGAGGAGAA+TGG | - | chr1_4:4340739-4340758 | None:intergenic | 50.0% | |
| CTGAAAGGAATTGACGAGGG+AGG | - | chr1_4:4340746-4340765 | None:intergenic | 50.0% | |
| CTCCCTCGTCAATTCCTTTC+AGG | + | chr1_4:4340744-4340763 | Msa0144800:intron | 50.0% | |
| !! | GTAGAGGGTGCTGTTGTTGT+TGG | + | chr1_4:4340910-4340929 | Msa0144800:CDS | 50.0% |
| CAAGGAACACTGACCTTTGG+CGG | - | chr1_4:4340977-4340996 | None:intergenic | 50.0% | |
| GCGGTCCTAATCACCTTCAA+TGG | - | chr1_4:4341155-4341174 | None:intergenic | 50.0% | |
| TAGTCCATACCACCCATACC+AGG | - | chr1_4:4341360-4341379 | None:intergenic | 50.0% | |
| AATGCAATGGACCTGAGGCG+AGG | + | chr1_4:4338298-4338317 | Msa0144800:CDS | 55.0% | |
| CTACTGTCCTGCAGTCCTTG+TGG | - | chr1_4:4338445-4338464 | None:intergenic | 55.0% | |
| TCGTTGTCAGGTGTCCGTGT+CGG | + | chr1_4:4339177-4339196 | Msa0144800:intron | 55.0% | |
| ATGGAGCAAGGACACCGACA+CGG | - | chr1_4:4339194-4339213 | None:intergenic | 55.0% | |
| AGAGGATCCTCGAGTTCCTG+TGG | - | chr1_4:4339275-4339294 | None:intergenic | 55.0% | |
| GTATGTGCGATCAAAGCCCC+TGG | + | chr1_4:4339643-4339662 | Msa0144800:CDS | 55.0% | |
| ! | GCGATCAAAGCCCCTGGTTT+TGG | + | chr1_4:4339649-4339668 | Msa0144800:CDS | 55.0% |
| !!! | CCCCTGGTTTTGGGGAAAAC+AGG | + | chr1_4:4339659-4339678 | Msa0144800:CDS | 55.0% |
| GAAGATTGGAGGAGCCAGTG+AGG | + | chr1_4:4340401-4340420 | Msa0144800:intron | 55.0% | |
| CTCACCAACTTCAGCCTCAC+TGG | - | chr1_4:4340418-4340437 | None:intergenic | 55.0% | |
| TGCAACCAAGGCAGCTGTAG+AGG | + | chr1_4:4340467-4340486 | Msa0144800:CDS | 55.0% | |
| AACCAAGGCAGCTGTAGAGG+AGG | + | chr1_4:4340470-4340489 | Msa0144800:CDS | 55.0% | |
| ACCAAGGCAGCTGTAGAGGA+GGG | + | chr1_4:4340471-4340490 | Msa0144800:CDS | 55.0% | |
| ! | GTAGAGGAGGGCATAGTACC+TGG | + | chr1_4:4340483-4340502 | Msa0144800:CDS | 55.0% |
| GCGGCATCGTAACCAAGATC+AGG | - | chr1_4:4340958-4340977 | None:intergenic | 55.0% | |
| CTTGGTTACGATGCCGCCAA+AGG | + | chr1_4:4340961-4340980 | Msa0144800:CDS | 55.0% | |
| GAAGGTGATTAGGACCGCCT+TGG | + | chr1_4:4341157-4341176 | Msa0144800:CDS | 55.0% | |
| AAAGATGCTCCTGCCATGCC+TGG | + | chr1_4:4341339-4341358 | Msa0144800:CDS | 55.0% | |
| CATACCACCCATACCAGGCA+TGG | - | chr1_4:4341355-4341374 | None:intergenic | 55.0% | |
| CATGCCTGGTATGGGTGGTA+TGG | + | chr1_4:4341353-4341372 | Msa0144800:CDS | 55.0% | |
| GGAGCCAGTGAGGCTGAAGT+TGG | + | chr1_4:4340411-4340430 | Msa0144800:CDS | 60.0% | |
| CTACCTGGCTGCGTCAACCA+AGG | - | chr1_4:4341177-4341196 | None:intergenic | 60.0% | |
| CTTGGTTGACGCAGCCAGGT+AGG | + | chr1_4:4341175-4341194 | Msa0144800:intron | 60.0% | |
| TGCTCCTGCCATGCCTGGTA+TGG | + | chr1_4:4341344-4341363 | Msa0144800:CDS | 60.0% | |
| GCTCCTGCCATGCCTGGTAT+GGG | + | chr1_4:4341345-4341364 | Msa0144800:CDS | 60.0% | |
| GCCCTCCTCTACAGCTGCCT+TGG | - | chr1_4:4340475-4340494 | None:intergenic | 65.0% | |
| CCTGGCTGCGTCAACCAAGG+CGG | - | chr1_4:4341174-4341193 | None:intergenic | 65.0% | |
| CCACCCATACCAGGCATGGC+AGG | - | chr1_4:4341351-4341370 | None:intergenic | 65.0% | |
| CCTGCCATGCCTGGTATGGG+TGG | + | chr1_4:4341348-4341367 | Msa0144800:CDS | 65.0% | |
| CCGCCTTGGTTGACGCAGCC+AGG | + | chr1_4:4341171-4341190 | Msa0144800:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4336752 | 4341794 | 4336752 | ID=Msa0144800;Name=Msa0144800 |
| chr1_4 | mRNA | 4336752 | 4341794 | 4336752 | ID=Msa0144800-mRNA-1;Parent=Msa0144800;Name=Msa0144800-mRNA-1;_AED=0.30;_eAED=0.30;_QI=160|1|1|1|1|1|18|411|574 |
| chr1_4 | exon | 4336752 | 4336949 | 4336752 | ID=Msa0144800-mRNA-1:exon:1809;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4337233 | 4337257 | 4337233 | ID=Msa0144800-mRNA-1:exon:1810;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4337363 | 4337494 | 4337363 | ID=Msa0144800-mRNA-1:exon:1811;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4337747 | 4337906 | 4337747 | ID=Msa0144800-mRNA-1:exon:1812;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4338227 | 4338402 | 4338227 | ID=Msa0144800-mRNA-1:exon:1813;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4338503 | 4338598 | 4338503 | ID=Msa0144800-mRNA-1:exon:1814;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4338774 | 4338878 | 4338774 | ID=Msa0144800-mRNA-1:exon:1815;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4339278 | 4339364 | 4339278 | ID=Msa0144800-mRNA-1:exon:1816;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4339451 | 4339540 | 4339451 | ID=Msa0144800-mRNA-1:exon:1817;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4339643 | 4339723 | 4339643 | ID=Msa0144800-mRNA-1:exon:1818;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4339812 | 4339880 | 4339812 | ID=Msa0144800-mRNA-1:exon:1819;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4340006 | 4340083 | 4340006 | ID=Msa0144800-mRNA-1:exon:1820;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4340210 | 4340305 | 4340210 | ID=Msa0144800-mRNA-1:exon:1821;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4340405 | 4340504 | 4340405 | ID=Msa0144800-mRNA-1:exon:1822;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4340587 | 4340690 | 4340587 | ID=Msa0144800-mRNA-1:exon:1823;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4340877 | 4340982 | 4340877 | ID=Msa0144800-mRNA-1:exon:1824;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4341114 | 4341192 | 4341114 | ID=Msa0144800-mRNA-1:exon:1825;Parent=Msa0144800-mRNA-1 |
| chr1_4 | exon | 4341281 | 4341794 | 4341281 | ID=Msa0144800-mRNA-1:exon:1826;Parent=Msa0144800-mRNA-1 |
| chr1_4 | five_prime_UTR | 4336752 | 4336911 | 4336752 | ID=Msa0144800-mRNA-1:five_prime_utr;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4336912 | 4336949 | 4336912 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4337233 | 4337257 | 4337233 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4337363 | 4337494 | 4337363 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4337747 | 4337906 | 4337747 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4338227 | 4338402 | 4338227 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4338503 | 4338598 | 4338503 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4338774 | 4338878 | 4338774 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4339278 | 4339364 | 4339278 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4339451 | 4339540 | 4339451 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4339643 | 4339723 | 4339643 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4339812 | 4339880 | 4339812 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4340006 | 4340083 | 4340006 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4340210 | 4340305 | 4340210 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4340405 | 4340504 | 4340405 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4340587 | 4340690 | 4340587 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4340877 | 4340982 | 4340877 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4341114 | 4341192 | 4341114 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | CDS | 4341281 | 4341383 | 4341281 | ID=Msa0144800-mRNA-1:cds;Parent=Msa0144800-mRNA-1 |
| chr1_4 | three_prime_UTR | 4341384 | 4341794 | 4341384 | ID=Msa0144800-mRNA-1:three_prime_utr;Parent=Msa0144800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
