Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144810 | XP_003591642.1 | 99.479 | 576 | 3 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144810 | sp|Q05046|CH62_CUCMA | 90.619 | 565 | 53 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144810 | Q1RSH4 | 99.479 | 576 | 3 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0144810 | 0.822185 | 2.711946e-53 | -8.615850e-47 |
| Msa0016350 | Msa0144810 | 0.980697 | 8.058358e-151 | -8.615850e-47 |
| Msa0040220 | Msa0144810 | 0.832882 | 7.336958e-56 | -8.615850e-47 |
| Msa0087910 | Msa0144810 | 0.811806 | 5.822018e-51 | -8.615850e-47 |
| Msa0144800 | Msa0144810 | 0.803825 | 2.896964e-49 | -8.615850e-47 |
| Msa0144810 | Msa0192050 | 0.805608 | 1.229730e-49 | -8.615850e-47 |
| Msa0144810 | Msa0301220 | 0.813332 | 2.701251e-51 | -8.615850e-47 |
| Msa0144810 | Msa0313060 | 0.812711 | 3.694599e-51 | -8.615850e-47 |
| Msa0144810 | Msa0315430 | 0.815812 | 7.630905e-52 | -8.615850e-47 |
| Msa0144810 | Msa0475810 | 0.816228 | 6.160818e-52 | -8.615850e-47 |
| Msa0144810 | Msa0648620 | 0.808405 | 3.148445e-50 | -8.615850e-47 |
| Msa0144810 | Msa0648670 | 0.811267 | 7.624620e-51 | -8.615850e-47 |
| Msa0144810 | Msa0653060 | 0.804076 | 2.569125e-49 | -8.615850e-47 |
| Msa0144810 | Msa0694400 | 0.823660 | 1.229158e-53 | -8.615850e-47 |
| Msa0144810 | Msa0930100 | 0.802692 | 4.973685e-49 | -8.615850e-47 |
| Msa0144810 | Msa1040160 | 0.811001 | 8.708982e-51 | -8.615850e-47 |
| Msa0144810 | Msa1054280 | 0.816548 | 5.226288e-52 | -8.615850e-47 |
| Msa0144810 | Msa1083370 | 0.808702 | 2.719571e-50 | -8.615850e-47 |
| Msa0144810 | Msa1116940 | 0.811045 | 8.518473e-51 | -8.615850e-47 |
| Msa0144810 | Msa1237040 | 0.813827 | 2.101929e-51 | -8.615850e-47 |
| Msa0144810 | Msa1258540 | 0.824433 | 8.093264e-54 | -8.615850e-47 |
| Msa0144810 | Msa1278130 | 0.817369 | 3.417068e-52 | -8.615850e-47 |
| Msa0144810 | Msa1385480 | 0.812282 | 4.586033e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144810 | MtrunA17_Chr1g0196751 | 99.479 | 576 | 3 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1149 |
| Msa0144810 | MtrunA17_Chr1g0196761 | 95.637 | 573 | 24 | 1 | 1 | 573 | 1 | 572 | 0.0 | 1101 |
| Msa0144810 | MtrunA17_Chr8g0342341 | 70.475 | 569 | 166 | 2 | 1 | 567 | 1 | 569 | 0.0 | 785 |
| Msa0144810 | MtrunA17_Chr1g0152151 | 46.055 | 545 | 289 | 3 | 34 | 574 | 47 | 590 | 1.38e-164 | 481 |
| Msa0144810 | MtrunA17_Chr1g0152141 | 45.668 | 554 | 292 | 4 | 29 | 574 | 38 | 590 | 5.30e-164 | 480 |
| Msa0144810 | MtrunA17_Chr4g0028601 | 44.912 | 570 | 303 | 5 | 6 | 570 | 22 | 585 | 4.31e-158 | 464 |
| Msa0144810 | MtrunA17_Chr5g0421251 | 42.545 | 503 | 280 | 5 | 4 | 501 | 9 | 507 | 1.06e-135 | 405 |
| Msa0144810 | MtrunA17_Chr4g0043731 | 42.205 | 526 | 298 | 5 | 33 | 555 | 40 | 562 | 9.29e-135 | 404 |
| Msa0144810 | MtrunA17_Chr7g0241881 | 23.623 | 563 | 337 | 20 | 40 | 562 | 16 | 525 | 1.37e-13 | 73.6 |
| Msa0144810 | MtrunA17_Chr7g0272821 | 23.310 | 562 | 340 | 19 | 40 | 562 | 16 | 525 | 1.44e-13 | 73.6 |
| Msa0144810 | MtrunA17_Chr3g0126151 | 91.892 | 37 | 3 | 0 | 142 | 178 | 1 | 37 | 2.34e-13 | 67.8 |
| Msa0144810 | MtrunA17_Chr1g0212541 | 88.889 | 36 | 4 | 0 | 142 | 177 | 1 | 36 | 2.97e-13 | 64.7 |
| Msa0144810 | MtrunA17_Chr7g0238391 | 86.486 | 37 | 5 | 0 | 142 | 178 | 1 | 37 | 5.43e-13 | 65.5 |
| Msa0144810 | MtrunA17_Chr4g0019131 | 88.889 | 36 | 4 | 0 | 142 | 177 | 1 | 36 | 6.61e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144810 | AT3G23990.1 | 88.968 | 562 | 61 | 1 | 1 | 562 | 1 | 561 | 0.0 | 1016 |
| Msa0144810 | AT2G33210.1 | 85.816 | 564 | 80 | 0 | 1 | 564 | 1 | 564 | 0.0 | 989 |
| Msa0144810 | AT2G33210.2 | 85.106 | 564 | 79 | 1 | 1 | 564 | 1 | 559 | 0.0 | 974 |
| Msa0144810 | AT3G13860.1 | 71.609 | 553 | 155 | 1 | 22 | 574 | 21 | 571 | 0.0 | 798 |
| Msa0144810 | AT5G56500.2 | 47.005 | 551 | 286 | 4 | 20 | 565 | 37 | 586 | 1.45e-168 | 492 |
| Msa0144810 | AT5G56500.1 | 47.005 | 551 | 286 | 4 | 20 | 565 | 37 | 586 | 1.45e-168 | 492 |
| Msa0144810 | AT3G13470.1 | 45.745 | 564 | 297 | 5 | 16 | 574 | 36 | 595 | 9.86e-163 | 477 |
| Msa0144810 | AT1G55490.5 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0144810 | AT1G55490.1 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0144810 | AT1G55490.3 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0144810 | AT1G55490.4 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0144810 | AT1G55490.2 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0144810 | AT2G28000.1 | 44.732 | 541 | 287 | 5 | 25 | 555 | 31 | 569 | 1.34e-155 | 458 |
| Msa0144810 | AT1G26230.1 | 42.992 | 528 | 296 | 3 | 33 | 556 | 39 | 565 | 9.58e-153 | 452 |
| Msa0144810 | AT1G26230.4 | 43.615 | 509 | 284 | 2 | 50 | 556 | 6 | 513 | 7.31e-152 | 448 |
| Msa0144810 | AT1G26230.3 | 43.762 | 505 | 281 | 2 | 54 | 556 | 2 | 505 | 1.08e-151 | 447 |
| Msa0144810 | AT1G26230.2 | 43.008 | 472 | 264 | 3 | 33 | 500 | 39 | 509 | 3.71e-135 | 405 |
| Msa0144810 | AT5G18820.1 | 39.665 | 537 | 317 | 4 | 34 | 567 | 35 | 567 | 2.94e-121 | 370 |
| Msa0144810 | AT1G26230.5 | 43.210 | 405 | 227 | 2 | 33 | 435 | 39 | 442 | 2.98e-117 | 356 |
| Msa0144810 | AT5G18820.2 | 38.661 | 463 | 278 | 3 | 108 | 567 | 2 | 461 | 1.81e-97 | 305 |
| Msa0144810 | AT5G18820.3 | 39.050 | 379 | 230 | 1 | 34 | 412 | 35 | 412 | 4.01e-82 | 264 |
| Msa0144810 | AT5G20890.1 | 22.995 | 561 | 343 | 18 | 40 | 562 | 16 | 525 | 1.69e-12 | 70.5 |
Find 154 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGCCTTTGTTGCATTTA+AGG | 0.047614 | 1_4:-4351354 | None:intergenic |
| CACAAACCTTTAAAGCATTT+TGG | 0.119176 | 1_4:-4351565 | None:intergenic |
| AATTATCCAAAATGCTTTAA+AGG | 0.122359 | 1_4:+4351559 | Msa0144810:CDS |
| GAAAGATTGGCCAAGCTTTC+TGG | 0.170406 | 1_4:+4351144 | Msa0144810:CDS |
| CAGGATCTTGCTGTTCTTAC+AGG | 0.177451 | 1_4:+4350487 | Msa0144810:CDS |
| ATAGAAAACATACACATTTC+TGG | 0.224089 | 1_4:-4349467 | None:intergenic |
| GCAGCTAAAGAGATCAAATT+TGG | 0.235531 | 1_4:+4347962 | Msa0144810:CDS |
| GCCTATCTTCTGATCAAAAT+TGG | 0.268310 | 1_4:-4351531 | None:intergenic |
| TTCCGGCGCGAAGCTTATTT+AGG | 0.280357 | 1_4:-4350304 | None:intergenic |
| AGCAACAGTTACTCCATCTT+TGG | 0.281901 | 1_4:-4348387 | None:intergenic |
| ACTCCATCTTTGGTCACTTT+AGG | 0.294014 | 1_4:-4348377 | None:intergenic |
| TCTGTCCCCATTAGCGGATA+TGG | 0.308476 | 1_4:-4348980 | None:intergenic |
| ACAATTTCTTACTAATTTAG+AGG | 0.315746 | 1_4:-4352486 | None:intergenic |
| GCTAATGGGGACAGAGAAAT+TGG | 0.316317 | 1_4:+4348988 | Msa0144810:CDS |
| TTGATCCATTGAAGGTGATT+AGG | 0.317500 | 1_4:+4352034 | Msa0144810:CDS |
| GGCTCGTGCTTTGATGCTTA+AGG | 0.319494 | 1_4:+4347991 | Msa0144810:CDS |
| GCCTGCTGGCATGGGTGGCA+TGG | 0.321916 | 1_4:+4352244 | Msa0144810:CDS |
| GCCATCAAAGCCCCTGGTTT+TGG | 0.322345 | 1_4:+4350442 | Msa0144810:CDS |
| TCCTGCTATGCCTGCTGGCA+TGG | 0.323193 | 1_4:+4352235 | Msa0144810:CDS |
| ACCAAAACCAGGGGCTTTGA+TGG | 0.331514 | 1_4:-4350443 | None:intergenic |
| CCTGCTGGCATGGGTGGCAT+GGG | 0.334854 | 1_4:+4352245 | Msa0144810:CDS |
| TAACTCTAATACTTTAACTA+TGG | 0.336418 | 1_4:-4350129 | None:intergenic |
| TTCTGGTTTGTTATGAAATA+CGG | 0.342174 | 1_4:-4349441 | None:intergenic |
| TGCTAAGAGCATTGAGTTCA+AGG | 0.345906 | 1_4:+4348406 | Msa0144810:CDS |
| AAGAATGACAGTGTCATCTT+TGG | 0.352160 | 1_4:-4350909 | None:intergenic |
| TCCTCTCTAACCTACAGATT+TGG | 0.369099 | 1_4:-4352402 | None:intergenic |
| ATACACATTTCTGGTTCTTC+TGG | 0.375059 | 1_4:-4349458 | None:intergenic |
| ATTGATGACTTACCGAGCTT+TGG | 0.376430 | 1_4:-4347491 | None:intergenic |
| TCCACACTTTGAAGTTTGTC+CGG | 0.377048 | 1_4:+4352510 | Msa0144810:three_prime_UTR |
| AGCTGAAGTTGGTGAGAAAA+AGG | 0.380828 | 1_4:+4351316 | Msa0144810:CDS |
| GTGGGGACCATATCCGCTAA+TGG | 0.383651 | 1_4:+4348973 | Msa0144810:CDS |
| TTTGGTGAAAATCGGAAATC+TGG | 0.385519 | 1_4:+4350460 | Msa0144810:CDS |
| TGGTGGTGTTGCCGTGCTTA+AGG | 0.386684 | 1_4:+4351164 | Msa0144810:CDS |
| CTTAGGTGAATATGTTGATA+TGG | 0.387696 | 1_4:+4351996 | Msa0144810:intron |
| GGTTGTATAGGTTGGAAGTA+GGG | 0.389597 | 1_4:+4347919 | Msa0144810:intron |
| TTATGACAAGGATAAATTAC+AGG | 0.389882 | 1_4:+4351122 | Msa0144810:CDS |
| GCTCGTGCTTTGATGCTTAA+GGG | 0.392668 | 1_4:+4347992 | Msa0144810:CDS |
| GAACAGGATAATCCTGATCT+TGG | 0.397251 | 1_4:+4351844 | Msa0144810:CDS |
| TGGGGACCATATCCGCTAAT+GGG | 0.397544 | 1_4:+4348974 | Msa0144810:CDS |
| CCTGCTATGCCTGCTGGCAT+GGG | 0.398498 | 1_4:+4352236 | Msa0144810:CDS |
| TCATCCGTGCTCTGCTCTTA+AGG | 0.401053 | 1_4:-4348816 | None:intergenic |
| AATGTTTGGCTCTTGCAAAA+AGG | 0.401073 | 1_4:+4350649 | Msa0144810:CDS |
| CCTGAGGCGAGGTATAAATA+TGG | 0.408456 | 1_4:+4348771 | Msa0144810:CDS |
| GGCAAAACAAACCTTGATTC+CGG | 0.409741 | 1_4:-4350321 | None:intergenic |
| CAATCTTGAGAAAGTTGATC+TGG | 0.419323 | 1_4:+4350625 | Msa0144810:CDS |
| GTTGAGGGTGCGGTTGTTGT+TGG | 0.420681 | 1_4:+4351811 | Msa0144810:CDS |
| GGGTTGTATAGGTTGGAAGT+AGG | 0.427769 | 1_4:+4347918 | Msa0144810:intron |
| TGTTGGTAAACTATTGGAAC+AGG | 0.427783 | 1_4:+4351828 | Msa0144810:CDS |
| GTGGTTATTGAACAAAGTTT+TGG | 0.428796 | 1_4:+4348350 | Msa0144810:CDS |
| AAGGATAAGGTCAAGAATAT+TGG | 0.431645 | 1_4:+4348425 | Msa0144810:CDS |
| TAAGCTTCGCGCCGGAATCA+AGG | 0.431711 | 1_4:+4350310 | Msa0144810:CDS |
| TGCTAGGAACAACGTTCAAC+AGG | 0.435469 | 1_4:+4347770 | Msa0144810:CDS |
| GCTGGCATGGGTGGCATGGG+TGG | 0.436515 | 1_4:+4352248 | Msa0144810:CDS |
| GGATAAATTACAGGAAAGAT+TGG | 0.438480 | 1_4:+4351131 | Msa0144810:CDS |
| GATGACTTACCGAGCTTTGG+AGG | 0.447733 | 1_4:-4347488 | None:intergenic |
| AAAGTTGATCTGGAAATGTT+TGG | 0.450294 | 1_4:+4350635 | Msa0144810:CDS |
| CCACACTTTGAAGTTTGTCC+GGG | 0.451682 | 1_4:+4352511 | Msa0144810:three_prime_UTR |
| TCTTCAGCAACAATCAATAA+AGG | 0.452793 | 1_4:-4350251 | None:intergenic |
| GGTTGTTGTTGGTAAACTAT+TGG | 0.457972 | 1_4:+4351822 | Msa0144810:CDS |
| CCCATGCCAGCAGGCATAGC+AGG | 0.458740 | 1_4:-4352236 | None:intergenic |
| CTGTAAGAACAGCAAGATCC+TGG | 0.459511 | 1_4:-4350486 | None:intergenic |
| GGCAACACCACCAGAAAGCT+TGG | 0.460471 | 1_4:-4351154 | None:intergenic |
| GAGCATTGAGTTCAAGGATA+AGG | 0.465285 | 1_4:+4348412 | Msa0144810:CDS |
| GATGACACTGTCATTCTTGA+CGG | 0.465554 | 1_4:+4350914 | Msa0144810:CDS |
| TGGAATTATTGATCCATTGA+AGG | 0.473862 | 1_4:+4352026 | Msa0144810:CDS |
| AATTTCTCTGTCCCCATTAG+CGG | 0.478670 | 1_4:-4348986 | None:intergenic |
| GCAGTCCTAATCACCTTCAA+TGG | 0.480590 | 1_4:-4352039 | None:intergenic |
| CTTTCTCAAGATTGTGGCCA+AGG | 0.483503 | 1_4:-4350616 | None:intergenic |
| TATGTTGATATGGTTAAAGC+TGG | 0.483553 | 1_4:+4352006 | Msa0144810:CDS |
| GGACCATCTTTATCTTCACT+TGG | 0.484269 | 1_4:-4352215 | None:intergenic |
| GCTCCTAAAGTGACCAAAGA+TGG | 0.484659 | 1_4:+4348374 | Msa0144810:CDS |
| GCAGCATCGTAACCAAGATC+AGG | 0.490844 | 1_4:-4351856 | None:intergenic |
| AGCAACCTGCTTTACAAGAC+TGG | 0.493066 | 1_4:-4348450 | None:intergenic |
| TGAGTTAATTGCAAAAGCTA+TGG | 0.493322 | 1_4:+4349011 | Msa0144810:CDS |
| CCCATGCCACCCATGCCAGC+AGG | 0.496210 | 1_4:-4352245 | None:intergenic |
| TTTCTCATGGATTATGATGA+GGG | 0.496283 | 1_4:-4350087 | None:intergenic |
| TGGTGCCAGTCTTGTAAAGC+AGG | 0.499843 | 1_4:+4348445 | Msa0144810:CDS |
| ATGGAGAAAGTTGGCAAAGA+AGG | 0.503330 | 1_4:+4349030 | Msa0144810:CDS |
| AACGAGTTGGAAGTTGTTGA+AGG | 0.508899 | 1_4:+4349390 | Msa0144810:CDS |
| CTGCCTTGGTTGATGCAGCC+AGG | 0.509195 | 1_4:+4352058 | Msa0144810:CDS |
| GCTATGCCTGCTGGCATGGG+TGG | 0.510675 | 1_4:+4352239 | Msa0144810:CDS |
| GTGTGTGCCATCAAAGCCCC+TGG | 0.511219 | 1_4:+4350436 | Msa0144810:CDS |
| GGCTGCAAATCAGTTGCCGC+TGG | 0.515513 | 1_4:+4348733 | Msa0144810:CDS |
| GATGGTCCTGCTATGCCTGC+TGG | 0.515745 | 1_4:+4352230 | Msa0144810:CDS |
| TAAAGTAACCATGGGTCCTA+AGG | 0.516839 | 1_4:+4348039 | Msa0144810:CDS |
| TTTAGTTACCTTAGGACCCA+TGG | 0.520196 | 1_4:-4348047 | None:intergenic |
| AAATCGGAAATCTGGTCTCC+AGG | 0.523310 | 1_4:+4350468 | Msa0144810:CDS |
| GCATCAAATGCTGGAGTTGA+GGG | 0.525412 | 1_4:+4351796 | Msa0144810:CDS |
| GCTTAGTGTTTACTGACAGA+AGG | 0.527316 | 1_4:+4352352 | Msa0144810:three_prime_UTR |
| TATTGAGGAAAGATGTGAGC+AGG | 0.528209 | 1_4:+4350955 | Msa0144810:CDS |
| GTAGAGGAGGGCATAGTACC+TGG | 0.531895 | 1_4:+4351377 | Msa0144810:CDS |
| TACCACTCTCTCTCTAATCA+AGG | 0.533829 | 1_4:-4352306 | None:intergenic |
| ACTGTCATTCTTGACGGTGC+TGG | 0.534427 | 1_4:+4350920 | Msa0144810:CDS |
| TGCAACAAAGGCAGCTGTAG+AGG | 0.534585 | 1_4:+4351361 | Msa0144810:CDS |
| GCAAAAGCTATGGAGAAAGT+TGG | 0.536845 | 1_4:+4349021 | Msa0144810:CDS |
| ACCATCACCAGCCACATCAT+TGG | 0.538003 | 1_4:-4348480 | None:intergenic |
| TGGTGATAAGAAAGCTATTG+AGG | 0.540583 | 1_4:+4350940 | Msa0144810:CDS |
| CACACAATTGCATCAAATGC+TGG | 0.544124 | 1_4:+4351787 | Msa0144810:CDS |
| CACTTCTGAAGAAATAGCCC+AGG | 0.545555 | 1_4:+4348843 | Msa0144810:CDS |
| GATCAACTTTCTCAAGATTG+TGG | 0.546281 | 1_4:-4350622 | None:intergenic |
| GAAGGTGATTAGGACTGCCT+TGG | 0.550976 | 1_4:+4352044 | Msa0144810:CDS |
| TATTTAGGATAAGAGTTGCA+AGG | 0.553538 | 1_4:-4350289 | None:intergenic |
| ATTTAGGATAAGAGTTGCAA+GGG | 0.555828 | 1_4:-4350288 | None:intergenic |
| GACCATCTTTATCTTCACTT+GGG | 0.556084 | 1_4:-4352214 | None:intergenic |
| CAAGACATTGCACAACGAGT+TGG | 0.556191 | 1_4:+4349377 | Msa0144810:CDS |
| AGGCAAGTGATGAAGCAAAT+CGG | 0.556883 | 1_4:-4347468 | None:intergenic |
| ACCAAATCTGTAGGTTAGAG+AGG | 0.561117 | 1_4:+4352401 | Msa0144810:three_prime_UTR |
| TGCATCAAATGCTGGAGTTG+AGG | 0.564923 | 1_4:+4351795 | Msa0144810:CDS |
| CAATTTCTTACTAATTTAGA+GGG | 0.568203 | 1_4:-4352485 | None:intergenic |
| CATCACTTGCCTCCAAAGCT+CGG | 0.570155 | 1_4:+4347479 | Msa0144810:CDS |
| CAGCTTATCACAGAAGACCT+TGG | 0.571314 | 1_4:+4350599 | Msa0144810:intron |
| AGGTTGGAAGTAGGGTGGCA+TGG | 0.572357 | 1_4:+4347927 | Msa0144810:intron |
| TGATGAAGCAAATCGGTACA+TGG | 0.576970 | 1_4:-4347461 | None:intergenic |
| ACCAATGATGTGGCTGGTGA+TGG | 0.577314 | 1_4:+4348479 | Msa0144810:CDS |
| CCATATTTATACCTCGCCTC+AGG | 0.579496 | 1_4:-4348771 | None:intergenic |
| AACAAAGGCAGCTGTAGAGG+AGG | 0.586821 | 1_4:+4351364 | Msa0144810:CDS |
| TGAGGCTGTTAAAGTAACCA+TGG | 0.596952 | 1_4:+4348030 | Msa0144810:CDS |
| TTCTCATGGATTATGATGAG+GGG | 0.598423 | 1_4:-4350086 | None:intergenic |
| AATGCTACCAATGATGTGGC+TGG | 0.598967 | 1_4:+4348473 | Msa0144810:CDS |
| TTTGATGCAATTGTGTGCAC+AGG | 0.599091 | 1_4:-4351781 | None:intergenic |
| GGGGACCATATCCGCTAATG+GGG | 0.603468 | 1_4:+4348975 | Msa0144810:CDS |
| CTCCCAAGTGAAGATAAAGA+TGG | 0.604022 | 1_4:+4352212 | Msa0144810:CDS |
| TTAATTTGTAATCATAGCAG+AGG | 0.609511 | 1_4:+4352377 | Msa0144810:three_prime_UTR |
| CCCGGACAAACTTCAAAGTG+TGG | 0.610608 | 1_4:-4352511 | None:intergenic |
| CTTGGTTACGATGCTGCCAA+AGG | 0.611947 | 1_4:+4351862 | Msa0144810:CDS |
| GGAGCTAGTGAAGCTGAAGT+TGG | 0.613860 | 1_4:+4351305 | Msa0144810:CDS |
| AACCTTGATTAGAGAGAGAG+TGG | 0.614650 | 1_4:+4352304 | Msa0144810:intron |
| AGATGCCTTAAATGCAACAA+AGG | 0.621159 | 1_4:+4351349 | Msa0144810:CDS |
| AAGCATATGCACCTTAAGCA+CGG | 0.621758 | 1_4:-4351175 | None:intergenic |
| GAGGCTGTTAAAGTAACCAT+GGG | 0.623740 | 1_4:+4348031 | Msa0144810:CDS |
| GTCCATCGCATTCATTCCAG+CGG | 0.625634 | 1_4:-4348749 | None:intergenic |
| TAATTTGTAATCATAGCAGA+GGG | 0.633749 | 1_4:+4352378 | Msa0144810:three_prime_UTR |
| ACAAAGGCAGCTGTAGAGGA+GGG | 0.636898 | 1_4:+4351365 | Msa0144810:CDS |
| GATCTTGCTGTTCTTACAGG+AGG | 0.638779 | 1_4:+4350490 | Msa0144810:CDS |
| AGAGATCAAATTTGGCGTGG+AGG | 0.640072 | 1_4:+4347970 | Msa0144810:CDS |
| AGATTGGCCAAGCTTTCTGG+TGG | 0.640409 | 1_4:+4351147 | Msa0144810:CDS |
| TGCCGCTGGAATGAATGCGA+TGG | 0.642845 | 1_4:+4348747 | Msa0144810:CDS |
| ATCCTAAATAAGCTTCGCGC+CGG | 0.645878 | 1_4:+4350302 | Msa0144810:CDS |
| AAATGCTGGAGTTGAGGGTG+CGG | 0.648904 | 1_4:+4351801 | Msa0144810:CDS |
| TGCTAATGCTACCAATGATG+TGG | 0.649168 | 1_4:+4348469 | Msa0144810:CDS |
| TGTATAGGTTGGAAGTAGGG+TGG | 0.649533 | 1_4:+4347922 | Msa0144810:intron |
| AATACGGAGAAATATAGCCT+CGG | 0.650237 | 1_4:-4349425 | None:intergenic |
| GAATGAATGCGATGGACCTG+AGG | 0.657715 | 1_4:+4348755 | Msa0144810:CDS |
| TTTGTGTCAACAGGAACTTG+AGG | 0.658510 | 1_4:+4350061 | Msa0144810:intron |
| TTACCTGGCTGCATCAACCA+AGG | 0.661466 | 1_4:-4352061 | None:intergenic |
| TAAAGAGATCAAATTTGGCG+TGG | 0.674218 | 1_4:+4347967 | Msa0144810:CDS |
| AATGCGATGGACCTGAGGCG+AGG | 0.674402 | 1_4:+4348760 | Msa0144810:CDS |
| AGCAGAGGGACCAAATCTGT+AGG | 0.677964 | 1_4:+4352392 | Msa0144810:three_prime_UTR |
| CAAGCCTTAAGAGCAGAGCA+CGG | 0.696859 | 1_4:+4348812 | Msa0144810:CDS |
| TAGCACTTCAGATTATGACA+AGG | 0.707188 | 1_4:+4351110 | Msa0144810:CDS |
| GAAGGAATGAAGCTTGACCG+AGG | 0.708985 | 1_4:+4349408 | Msa0144810:CDS |
| TTTGTTCAATAACCACATTG+CGG | 0.713542 | 1_4:-4348343 | None:intergenic |
| GGGTGTTGAAGACCTCGCTG+AGG | 0.716699 | 1_4:+4348012 | Msa0144810:CDS |
| TTACTTTAACAGCCTCAGCG+AGG | 0.735881 | 1_4:-4348024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTATTTTTTATGT+AGG | + | chr1_4:4347745-4347764 | Msa0144810:intron | 10.0% |
| !! | ATTATCAATATTATTTATCT+GGG | + | chr1_4:4349097-4349116 | Msa0144810:intron | 10.0% |
| !! | TAAGAATTTATATTAGATTT+GGG | - | chr1_4:4349776-4349795 | None:intergenic | 10.0% |
| !! | ATAAGAATTTATATTAGATT+TGG | - | chr1_4:4349777-4349796 | None:intergenic | 10.0% |
| !!! | AATATAGAAAAATTTGTTTA+AGG | + | chr1_4:4349827-4349846 | Msa0144810:intron | 10.0% |
| !!! | ATTTGAACTTTTTCATTTAT+TGG | + | chr1_4:4347644-4347663 | Msa0144810:intron | 15.0% |
| !!! | TTTGAACTTTTTCATTTATT+GGG | + | chr1_4:4347645-4347664 | Msa0144810:intron | 15.0% |
| !!! | TAGCATTTGTTAATTTTATT+TGG | + | chr1_4:4347813-4347832 | Msa0144810:intron | 15.0% |
| !!! | TGTCCTTTTATTTATTAAAT+TGG | + | chr1_4:4348276-4348295 | Msa0144810:intron | 15.0% |
| !! | ACACCAATTTAATAAATAAA+AGG | - | chr1_4:4348282-4348301 | None:intergenic | 15.0% |
| !!! | ATTTTAAAGCTAATAGTAAT+AGG | + | chr1_4:4348876-4348895 | Msa0144810:intron | 15.0% |
| !! | CATTATCAATATTATTTATC+TGG | + | chr1_4:4349096-4349115 | Msa0144810:intron | 15.0% |
| !! | TAACATTTGTAAATTATGAA+TGG | + | chr1_4:4349635-4349654 | Msa0144810:intron | 15.0% |
| !!! | TTGATTTTGATTAAAAGTAT+AGG | + | chr1_4:4349674-4349693 | Msa0144810:intron | 15.0% |
| !! | CTATATTAATGTTATATTGT+TGG | - | chr1_4:4349814-4349833 | None:intergenic | 15.0% |
| !! | AATCAAACTAAAAATGTTAA+GGG | - | chr1_4:4350826-4350845 | None:intergenic | 15.0% |
| !! | TAATCAAACTAAAAATGTTA+AGG | - | chr1_4:4350827-4350846 | None:intergenic | 15.0% |
| !!! | TTTTAGTTTGATTATATGTA+AGG | + | chr1_4:4350833-4350852 | Msa0144810:intron | 15.0% |
| !! | ATACATTTATCATATATGAT+TGG | - | chr1_4:4351446-4351465 | None:intergenic | 15.0% |
| !!! | TTTAACTTAAATTGCAATTT+TGG | + | chr1_4:4351713-4351732 | Msa0144810:intron | 15.0% |
| !!! | TTTTCTGAAATTGTTCATAT+GGG | + | chr1_4:4347590-4347609 | Msa0144810:intron | 20.0% |
| !!! | TTGTTGTTTTTAACTCTTTA+TGG | + | chr1_4:4347856-4347875 | Msa0144810:intron | 20.0% |
| !!! | TTTTTTAATTTGGGTTGTAT+AGG | + | chr1_4:4347907-4347926 | Msa0144810:intron | 20.0% |
| !!! | TATCACTTTTCCTATTTTTA+GGG | + | chr1_4:4348320-4348339 | Msa0144810:intron | 20.0% |
| !!! | ATTTTAAATTTTGCAATGTC+AGG | + | chr1_4:4348951-4348970 | Msa0144810:intron | 20.0% |
| !!! | TTTACATGTTTTATTGATCT+GGG | + | chr1_4:4349120-4349139 | Msa0144810:intron | 20.0% |
| !!! | CTAGTGTACATTTTTTTTTT+TGG | - | chr1_4:4349193-4349212 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATGTACACTAG+AGG | + | chr1_4:4349193-4349212 | Msa0144810:intron | 20.0% |
| !!! | AATTTGTTTAAGGTTATAGT+TGG | + | chr1_4:4349837-4349856 | Msa0144810:intron | 20.0% |
| !! | TATAGTTGGAATAATGAAAA+AGG | + | chr1_4:4349851-4349870 | Msa0144810:intron | 20.0% |
| !! | TCTATCCTATACTATAAAAA+GGG | - | chr1_4:4349889-4349908 | None:intergenic | 20.0% |
| !! | ATCTATCCTATACTATAAAA+AGG | - | chr1_4:4349890-4349909 | None:intergenic | 20.0% |
| !! | TAACTCTAATACTTTAACTA+TGG | - | chr1_4:4350132-4350151 | None:intergenic | 20.0% |
| !!! | TCTTAGGTACTTTAAATTTT+TGG | + | chr1_4:4350367-4350386 | Msa0144810:intron | 20.0% |
| !! | ATCTAAAAGATTAAGAAACT+TGG | - | chr1_4:4350881-4350900 | None:intergenic | 20.0% |
| !!! | TTAAAGCATTTTGGATAATT+TGG | - | chr1_4:4351559-4351578 | None:intergenic | 20.0% |
| !! | AATTATCCAAAATGCTTTAA+AGG | + | chr1_4:4351559-4351578 | Msa0144810:CDS | 20.0% |
| !! | CAATTTCTTACTAATTTAGA+GGG | - | chr1_4:4352488-4352507 | None:intergenic | 20.0% |
| !! | ACAATTTCTTACTAATTTAG+AGG | - | chr1_4:4352489-4352508 | None:intergenic | 20.0% |
| !!! | GTTTTCTGAAATTGTTCATA+TGG | + | chr1_4:4347589-4347608 | Msa0144810:intron | 25.0% |
| ! | TTAGAACCATTCAAGATAAT+TGG | - | chr1_4:4347716-4347735 | None:intergenic | 25.0% |
| !!! | ATTTTTTATGTAGGATTGCT+AGG | + | chr1_4:4347754-4347773 | Msa0144810:intron | 25.0% |
| !! | AAGATTTGTTTAGTTACCTT+AGG | - | chr1_4:4348058-4348077 | None:intergenic | 25.0% |
| !! | AATCTTCTATTTCTTTCACA+TGG | + | chr1_4:4348072-4348091 | Msa0144810:intron | 25.0% |
| !! | ATCTTCTATTTCTTTCACAT+GGG | + | chr1_4:4348073-4348092 | Msa0144810:intron | 25.0% |
| ! | TTGGTAAATGTAGTAGAATA+AGG | + | chr1_4:4348116-4348135 | Msa0144810:intron | 25.0% |
| ! | GCTTTATATAATGCTGATAA+TGG | + | chr1_4:4348158-4348177 | Msa0144810:intron | 25.0% |
| ! | AAAGTGATACATCAATAATC+AGG | - | chr1_4:4348309-4348328 | None:intergenic | 25.0% |
| !!! | GTATCACTTTTCCTATTTTT+AGG | + | chr1_4:4348319-4348338 | Msa0144810:intron | 25.0% |
| !! | GTAAATCTACATCATTGATT+TGG | + | chr1_4:4348543-4348562 | Msa0144810:intron | 25.0% |
| !!! | ATTGATTTGGTTTTATCTCT+AGG | + | chr1_4:4348556-4348575 | Msa0144810:intron | 25.0% |
| !!! | ATTTTTGTTATTTGACTGAG+TGG | + | chr1_4:4348651-4348670 | Msa0144810:intron | 25.0% |
| ! | TTAAAATTTCACACAAACCT+GGG | - | chr1_4:4348863-4348882 | None:intergenic | 25.0% |
| !! | TTTAAAATTTCACACAAACC+TGG | - | chr1_4:4348864-4348883 | None:intergenic | 25.0% |
| ! | AATAGTAATAGGCATATTGT+AGG | + | chr1_4:4348887-4348906 | Msa0144810:intron | 25.0% |
| !!! | GTTTACATGTTTTATTGATC+TGG | + | chr1_4:4349119-4349138 | Msa0144810:intron | 25.0% |
| !!! | TTACATGTTTTATTGATCTG+GGG | + | chr1_4:4349121-4349140 | Msa0144810:intron | 25.0% |
| ! | TTGTGAGAATAAATCAAGAA+GGG | - | chr1_4:4349221-4349240 | None:intergenic | 25.0% |
| ! | ATTGTGAGAATAAATCAAGA+AGG | - | chr1_4:4349222-4349241 | None:intergenic | 25.0% |
| !!! | TTCTGGTTTGTTATGAAATA+CGG | - | chr1_4:4349444-4349463 | None:intergenic | 25.0% |
| ! | ATAGAAAACATACACATTTC+TGG | - | chr1_4:4349470-4349489 | None:intergenic | 25.0% |
| !!! | AAAGATAAACATGGTTTGTT+GGG | - | chr1_4:4349733-4349752 | None:intergenic | 25.0% |
| !! | AAAAGATAAACATGGTTTGT+TGG | - | chr1_4:4349734-4349753 | None:intergenic | 25.0% |
| ! | GTCATTGAAAAAGATAAACA+TGG | - | chr1_4:4349742-4349761 | None:intergenic | 25.0% |
| !! | TATTAGATTTGGGATATTGT+TGG | - | chr1_4:4349766-4349785 | None:intergenic | 25.0% |
| !! | TACTATAAAAAGGGGATTTT+GGG | - | chr1_4:4349880-4349899 | None:intergenic | 25.0% |
| !! | ATACTATAAAAAGGGGATTT+TGG | - | chr1_4:4349881-4349900 | None:intergenic | 25.0% |
| !! | AAATCCCCTTTTTATAGTAT+AGG | + | chr1_4:4349881-4349900 | Msa0144810:intron | 25.0% |
| ! | CTATCCTATACTATAAAAAG+GGG | - | chr1_4:4349888-4349907 | None:intergenic | 25.0% |
| !!! | AACTTGAGATTTTTTTCTCA+TGG | - | chr1_4:4350103-4350122 | None:intergenic | 25.0% |
| ! | AAATAAGTAAAGCTACAGAT+AGG | - | chr1_4:4350345-4350364 | None:intergenic | 25.0% |
| ! | AGCTTTACTTATTTGTTCTT+AGG | + | chr1_4:4350351-4350370 | Msa0144810:intron | 25.0% |
| ! | AGATAAAACATATCATCCAT+CGG | - | chr1_4:4350574-4350593 | None:intergenic | 25.0% |
| ! | ATGCTACAACAATTAAAGTT+AGG | - | chr1_4:4350681-4350700 | None:intergenic | 25.0% |
| ! | ATGGTAAAATCAGATTGAAT+AGG | - | chr1_4:4350994-4351013 | None:intergenic | 25.0% |
| !! | TACCATTTTCATATAGAGAT+TGG | + | chr1_4:4351008-4351027 | Msa0144810:intron | 25.0% |
| !!! | TGATTTTTGATTTACAGATC+AGG | + | chr1_4:4351073-4351092 | Msa0144810:intron | 25.0% |
| ! | TTATGACAAGGATAAATTAC+AGG | + | chr1_4:4351122-4351141 | Msa0144810:CDS | 25.0% |
| !! | GTTATAAAAGAGCATAAGTA+CGG | - | chr1_4:4351217-4351236 | None:intergenic | 25.0% |
| !! | TTTTAGCACAAAAAAAACCT+TGG | - | chr1_4:4351252-4351271 | None:intergenic | 25.0% |
| !!! | ATTGCACAATTTAGTCTTAA+AGG | - | chr1_4:4351657-4351676 | None:intergenic | 25.0% |
| ! | TGCATTGTGTTAATTATAAC+AGG | - | chr1_4:4351757-4351776 | None:intergenic | 25.0% |
| ! | AATATTCTTAACATCTTACC+TGG | - | chr1_4:4352079-4352098 | None:intergenic | 25.0% |
| ! | AGATGTTAAGAATATTGCTT+TGG | + | chr1_4:4352083-4352102 | Msa0144810:intron | 25.0% |
| !! | TAAGAATATTGCTTTGGATA+TGG | + | chr1_4:4352089-4352108 | Msa0144810:intron | 25.0% |
| ! | AGAAAAATGCTATAAAACAG+TGG | - | chr1_4:4352332-4352351 | None:intergenic | 25.0% |
| !!! | TTAATTTGTAATCATAGCAG+AGG | + | chr1_4:4352377-4352396 | Msa0144810:three_prime_UTR | 25.0% |
| !! | TAATTTGTAATCATAGCAGA+GGG | + | chr1_4:4352378-4352397 | Msa0144810:three_prime_UTR | 25.0% |
| GTGTAAAAGGGTAATTGAAA+AGG | - | chr1_4:4347544-4347563 | None:intergenic | 30.0% | |
| GGATATCCAATTATCTTGAA+TGG | + | chr1_4:4347707-4347726 | Msa0144810:intron | 30.0% | |
| !! | TTAATTTGGGTTGTATAGGT+TGG | + | chr1_4:4347911-4347930 | Msa0144810:intron | 30.0% |
| !!! | ACCAATTTTGATTGTAGGAA+TGG | + | chr1_4:4348231-4348250 | Msa0144810:intron | 30.0% |
| TCCATTCCTACAATCAAAAT+TGG | - | chr1_4:4348235-4348254 | None:intergenic | 30.0% | |
| TTTGTTCAATAACCACATTG+CGG | - | chr1_4:4348346-4348365 | None:intergenic | 30.0% | |
| ! | GTGGTTATTGAACAAAGTTT+TGG | + | chr1_4:4348350-4348369 | Msa0144810:CDS | 30.0% |
| AAGGATAAGGTCAAGAATAT+TGG | + | chr1_4:4348425-4348444 | Msa0144810:CDS | 30.0% | |
| ! | TTAAATTTTGCAATGTCAGG+TGG | + | chr1_4:4348954-4348973 | Msa0144810:intron | 30.0% |
| ! | TAAATTTTGCAATGTCAGGT+GGG | + | chr1_4:4348955-4348974 | Msa0144810:intron | 30.0% |
| TGAGTTAATTGCAAAAGCTA+TGG | + | chr1_4:4349011-4349030 | Msa0144810:CDS | 30.0% | |
| TGTGAGAATAAATCAAGAAG+GGG | - | chr1_4:4349220-4349239 | None:intergenic | 30.0% | |
| ! | ATAATGGAGATGAAAAGAAG+TGG | - | chr1_4:4349277-4349296 | None:intergenic | 30.0% |
| TCATCTCCATTATCCTTTAA+AGG | + | chr1_4:4349284-4349303 | Msa0144810:intron | 30.0% | |
| ! | TGAACACCTTTAAAGGATAA+TGG | - | chr1_4:4349293-4349312 | None:intergenic | 30.0% |
| TCAAACATGAACACCTTTAA+AGG | - | chr1_4:4349300-4349319 | None:intergenic | 30.0% | |
| ATTTGTAATGCTGCTAATAG+AGG | - | chr1_4:4349498-4349517 | None:intergenic | 30.0% | |
| TTACACACATTAGTTACTAG+CGG | + | chr1_4:4349569-4349588 | Msa0144810:intron | 30.0% | |
| ATGTTAGTGCAATAAAAGAG+CGG | - | chr1_4:4349621-4349640 | None:intergenic | 30.0% | |
| ! | TTTCTCATGGATTATGATGA+GGG | - | chr1_4:4350090-4350109 | None:intergenic | 30.0% |
| !! | TTTTCTCATGGATTATGATG+AGG | - | chr1_4:4350091-4350110 | None:intergenic | 30.0% |
| ! | TCAATAAAGGTCTTTGTTTC+TGG | - | chr1_4:4350241-4350260 | None:intergenic | 30.0% |
| TCTTCAGCAACAATCAATAA+AGG | - | chr1_4:4350254-4350273 | None:intergenic | 30.0% | |
| ! | ATTTAGGATAAGAGTTGCAA+GGG | - | chr1_4:4350291-4350310 | None:intergenic | 30.0% |
| ! | TATTTAGGATAAGAGTTGCA+AGG | - | chr1_4:4350292-4350311 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTTGCATTGTCTT+AGG | + | chr1_4:4350414-4350433 | Msa0144810:intron | 30.0% |
| TAAGTTATCTATTCGCGATA+AGG | + | chr1_4:4350518-4350537 | Msa0144810:intron | 30.0% | |
| ! | AAAGTTGATCTGGAAATGTT+TGG | + | chr1_4:4350635-4350654 | Msa0144810:CDS | 30.0% |
| CTACAACAATTAAAGTTAGG+TGG | - | chr1_4:4350678-4350697 | None:intergenic | 30.0% | |
| !! | TGAGTTTTAGTACTCTTTCT+TGG | + | chr1_4:4350714-4350733 | Msa0144810:intron | 30.0% |
| GATTAAGAAACTTGGTTAAG+TGG | - | chr1_4:4350873-4350892 | None:intergenic | 30.0% | |
| GACCAATCTCTATATGAAAA+TGG | - | chr1_4:4351013-4351032 | None:intergenic | 30.0% | |
| GGATAAATTACAGGAAAGAT+TGG | + | chr1_4:4351131-4351150 | Msa0144810:CDS | 30.0% | |
| ATAACTAAGCATACAACTGT+CGG | - | chr1_4:4351416-4351435 | None:intergenic | 30.0% | |
| !!! | CACAAACCTTTAAAGCATTT+TGG | - | chr1_4:4351568-4351587 | None:intergenic | 30.0% |
| !! | CAATTTAGTCTTAAAGGAAC+CGG | - | chr1_4:4351651-4351670 | None:intergenic | 30.0% |
| TAAACCATAATGTGTCATGA+AGG | - | chr1_4:4351697-4351716 | None:intergenic | 30.0% | |
| ATTCACCTAAGCATGAAAAA+AGG | - | chr1_4:4351987-4352006 | None:intergenic | 30.0% | |
| CTTAGGTGAATATGTTGATA+TGG | + | chr1_4:4351996-4352015 | Msa0144810:intron | 30.0% | |
| TATGTTGATATGGTTAAAGC+TGG | + | chr1_4:4352006-4352025 | Msa0144810:CDS | 30.0% | |
| TGGAATTATTGATCCATTGA+AGG | + | chr1_4:4352026-4352045 | Msa0144810:CDS | 30.0% | |
| ! | ATTATTGCGGTGTTAAGTAA+AGG | - | chr1_4:4352139-4352158 | None:intergenic | 30.0% |
| TGGTTATTAGTAGATGAATC+TGG | + | chr1_4:4352268-4352287 | Msa0144810:intron | 30.0% | |
| AAGGTCTGTGAAACCAAAAA+AGG | - | chr1_4:4347525-4347544 | None:intergenic | 35.0% | |
| AATTGGATATCCAATCAACG+TGG | - | chr1_4:4347699-4347718 | None:intergenic | 35.0% | |
| GCAGCTAAAGAGATCAAATT+TGG | + | chr1_4:4347962-4347981 | Msa0144810:CDS | 35.0% | |
| TAAAGAGATCAAATTTGGCG+TGG | + | chr1_4:4347967-4347986 | Msa0144810:CDS | 35.0% | |
| !!! | TGAGCACCAATTTTGATTGT+AGG | + | chr1_4:4348226-4348245 | Msa0144810:intron | 35.0% |
| !! | ATGGTAAGCTGTTTTATCCA+TGG | + | chr1_4:4348498-4348517 | Msa0144810:intron | 35.0% |
| AGTATAAACTTCCAGTTCCA+TGG | - | chr1_4:4348518-4348537 | None:intergenic | 35.0% | |
| CTAGGACATGATATAGATGT+TGG | + | chr1_4:4348574-4348593 | Msa0144810:intron | 35.0% | |
| ! | ACTCGAGCAATATTTTCTGA+AGG | + | chr1_4:4348712-4348731 | Msa0144810:CDS | 35.0% |
| ! | AAATTTTGCAATGTCAGGTG+GGG | + | chr1_4:4348956-4348975 | Msa0144810:intron | 35.0% |
| GTGAGAATAAATCAAGAAGG+GGG | - | chr1_4:4349219-4349238 | None:intergenic | 35.0% | |
| TAAATAAAGAGTGGCTAAGG+TGG | - | chr1_4:4349253-4349272 | None:intergenic | 35.0% | |
| AGAAGTGGCTAAATAAAGAG+TGG | - | chr1_4:4349262-4349281 | None:intergenic | 35.0% | |
| AATACGGAGAAATATAGCCT+CGG | - | chr1_4:4349428-4349447 | None:intergenic | 35.0% | |
| !! | ATACACATTTCTGGTTCTTC+TGG | - | chr1_4:4349461-4349480 | None:intergenic | 35.0% |
| ATTAGTTACTAGCGGAAAGA+TGG | + | chr1_4:4349577-4349596 | Msa0144810:intron | 35.0% | |
| TTAGTTACTAGCGGAAAGAT+GGG | + | chr1_4:4349578-4349597 | Msa0144810:intron | 35.0% | |
| ! | AGTCATCCCCACTATATTTT+GGG | + | chr1_4:4349930-4349949 | Msa0144810:intron | 35.0% |
| ! | TTCTCATGGATTATGATGAG+GGG | - | chr1_4:4350089-4350108 | None:intergenic | 35.0% |
| TTTGGTGAAAATCGGAAATC+TGG | + | chr1_4:4350460-4350479 | Msa0144810:CDS | 35.0% | |
| GATCAACTTTCTCAAGATTG+TGG | - | chr1_4:4350625-4350644 | None:intergenic | 35.0% | |
| ! | CAATCTTGAGAAAGTTGATC+TGG | + | chr1_4:4350625-4350644 | Msa0144810:CDS | 35.0% |
| !! | AATGTTTGGCTCTTGCAAAA+AGG | + | chr1_4:4350649-4350668 | Msa0144810:CDS | 35.0% |
| GGTTATTGTTCATGATTGCT+TGG | + | chr1_4:4350735-4350754 | Msa0144810:intron | 35.0% | |
| ! | TGTTCATGATTGCTTGGTTT+TGG | + | chr1_4:4350741-4350760 | Msa0144810:intron | 35.0% |
| AAGAATGACAGTGTCATCTT+TGG | - | chr1_4:4350912-4350931 | None:intergenic | 35.0% | |
| TGGTGATAAGAAAGCTATTG+AGG | + | chr1_4:4350940-4350959 | Msa0144810:CDS | 35.0% | |
| TAGCACTTCAGATTATGACA+AGG | + | chr1_4:4351110-4351129 | Msa0144810:CDS | 35.0% | |
| ! | TAAAAGAGCATAAGTACGGA+TGG | - | chr1_4:4351213-4351232 | None:intergenic | 35.0% |
| ATAACCTGTTAAGCATTCCA+AGG | + | chr1_4:4351232-4351251 | Msa0144810:intron | 35.0% | |
| AAAACCTTGGAATGCTTAAC+AGG | - | chr1_4:4351239-4351258 | None:intergenic | 35.0% | |
| !! | GAAACCTGACTTTTGAAGAT+TGG | + | chr1_4:4351281-4351300 | Msa0144810:intron | 35.0% |
| AGATGCCTTAAATGCAACAA+AGG | + | chr1_4:4351349-4351368 | Msa0144810:CDS | 35.0% | |
| ! | GATAAATGTATGTTTTGCGC+AGG | + | chr1_4:4351455-4351474 | Msa0144810:intron | 35.0% |
| !! | GCCAATTTTGATCAGAAGAT+AGG | + | chr1_4:4351530-4351549 | Msa0144810:CDS | 35.0% |
| GCCTATCTTCTGATCAAAAT+TGG | - | chr1_4:4351534-4351553 | None:intergenic | 35.0% | |
| TTTGCCTTCATGACACATTA+TGG | + | chr1_4:4351690-4351709 | Msa0144810:intron | 35.0% | |
| ! | GGTTGTTGTTGGTAAACTAT+TGG | + | chr1_4:4351822-4351841 | Msa0144810:CDS | 35.0% |
| ! | TGTTGGTAAACTATTGGAAC+AGG | + | chr1_4:4351828-4351847 | Msa0144810:CDS | 35.0% |
| AAGTAAACACGGCAAAGAAA+TGG | - | chr1_4:4351905-4351924 | None:intergenic | 35.0% | |
| CCTTGTGACAAAAGTAAACA+CGG | - | chr1_4:4351916-4351935 | None:intergenic | 35.0% | |
| GCATGAAAAAAGGTTGACAA+GGG | - | chr1_4:4351977-4351996 | None:intergenic | 35.0% | |
| AGCATGAAAAAAGGTTGACA+AGG | - | chr1_4:4351978-4351997 | None:intergenic | 35.0% | |
| !!! | GTCAACCTTTTTTCATGCTT+AGG | + | chr1_4:4351979-4351998 | Msa0144810:intron | 35.0% |
| TTGATCCATTGAAGGTGATT+AGG | + | chr1_4:4352034-4352053 | Msa0144810:CDS | 35.0% | |
| ACACTGCAGGAAAATTATTG+CGG | - | chr1_4:4352152-4352171 | None:intergenic | 35.0% | |
| GACCATCTTTATCTTCACTT+GGG | - | chr1_4:4352217-4352236 | None:intergenic | 35.0% | |
| AGGCAAGTGATGAAGCAAAT+CGG | - | chr1_4:4347471-4347490 | None:intergenic | 40.0% | |
| ! | ATTGATGACTTACCGAGCTT+TGG | - | chr1_4:4347494-4347513 | None:intergenic | 40.0% |
| AAAGCTCGGTAAGTCATCAA+TGG | + | chr1_4:4347493-4347512 | Msa0144810:intron | 40.0% | |
| !!! | TCAATGGCAGTGTCCTTTTT+TGG | + | chr1_4:4347509-4347528 | Msa0144810:intron | 40.0% |
| ! | TCCATCTGAAGCGTGTAAAA+GGG | - | chr1_4:4347556-4347575 | None:intergenic | 40.0% |
| ! | ATCCATCTGAAGCGTGTAAA+AGG | - | chr1_4:4347557-4347576 | None:intergenic | 40.0% |
| ! | GGTTGTATAGGTTGGAAGTA+GGG | + | chr1_4:4347919-4347938 | Msa0144810:intron | 40.0% |
| TGAGGCTGTTAAAGTAACCA+TGG | + | chr1_4:4348030-4348049 | Msa0144810:CDS | 40.0% | |
| GAGGCTGTTAAAGTAACCAT+GGG | + | chr1_4:4348031-4348050 | Msa0144810:CDS | 40.0% | |
| TAAAGTAACCATGGGTCCTA+AGG | + | chr1_4:4348039-4348058 | Msa0144810:CDS | 40.0% | |
| TTTAGTTACCTTAGGACCCA+TGG | - | chr1_4:4348050-4348069 | None:intergenic | 40.0% | |
| !! | TTTCTTTCACATGGGTTAGC+AGG | + | chr1_4:4348081-4348100 | Msa0144810:intron | 40.0% |
| !! | TTCTTTCACATGGGTTAGCA+GGG | + | chr1_4:4348082-4348101 | Msa0144810:intron | 40.0% |
| TAGCAGGGGTAAGATATCTT+TGG | + | chr1_4:4348097-4348116 | Msa0144810:intron | 40.0% | |
| TCGTGTTCATTCTCATCAAG+AGG | + | chr1_4:4348201-4348220 | Msa0144810:intron | 40.0% | |
| ! | ACTCCATCTTTGGTCACTTT+AGG | - | chr1_4:4348380-4348399 | None:intergenic | 40.0% |
| AGCAACAGTTACTCCATCTT+TGG | - | chr1_4:4348390-4348409 | None:intergenic | 40.0% | |
| !! | TGCTAAGAGCATTGAGTTCA+AGG | + | chr1_4:4348406-4348425 | Msa0144810:CDS | 40.0% |
| !! | GAGCATTGAGTTCAAGGATA+AGG | + | chr1_4:4348412-4348431 | Msa0144810:CDS | 40.0% |
| TGCTAATGCTACCAATGATG+TGG | + | chr1_4:4348469-4348488 | Msa0144810:CDS | 40.0% | |
| !! | AGCTGTTTTATCCATGGAAC+TGG | + | chr1_4:4348504-4348523 | Msa0144810:intron | 40.0% |
| TGACTGAGTGGTCTAAATGT+TGG | + | chr1_4:4348663-4348682 | Msa0144810:intron | 40.0% | |
| AATTTCTCTGTCCCCATTAG+CGG | - | chr1_4:4348989-4349008 | None:intergenic | 40.0% | |
| GCAAAAGCTATGGAGAAAGT+TGG | + | chr1_4:4349021-4349040 | Msa0144810:CDS | 40.0% | |
| ATGGAGAAAGTTGGCAAAGA+AGG | + | chr1_4:4349030-4349049 | Msa0144810:CDS | 40.0% | |
| GGCTAAATAAAGAGTGGCTA+AGG | - | chr1_4:4349256-4349275 | None:intergenic | 40.0% | |
| ! | TCTAACTTTTGAGCTATGCC+AGG | + | chr1_4:4349350-4349369 | Msa0144810:intron | 40.0% |
| ! | AACGAGTTGGAAGTTGTTGA+AGG | + | chr1_4:4349390-4349409 | Msa0144810:CDS | 40.0% |
| CAATAAAAGAGCGGAAAGAC+GGG | - | chr1_4:4349612-4349631 | None:intergenic | 40.0% | |
| GCAATAAAAGAGCGGAAAGA+CGG | - | chr1_4:4349613-4349632 | None:intergenic | 40.0% | |
| ! | CAGTCATCCCCACTATATTT+TGG | + | chr1_4:4349929-4349948 | Msa0144810:intron | 40.0% |
| ! | GTCATCCCCACTATATTTTG+GGG | + | chr1_4:4349931-4349950 | Msa0144810:intron | 40.0% |
| TGTCGTCTATTTGTGTCAAC+AGG | + | chr1_4:4350052-4350071 | Msa0144810:intron | 40.0% | |
| TTTGTGTCAACAGGAACTTG+AGG | + | chr1_4:4350061-4350080 | Msa0144810:intron | 40.0% | |
| GGCAAAACAAACCTTGATTC+CGG | - | chr1_4:4350324-4350343 | None:intergenic | 40.0% | |
| ! | TCCGATTTTCACCAAAACCA+GGG | - | chr1_4:4350456-4350475 | None:intergenic | 40.0% |
| ! | TTCCGATTTTCACCAAAACC+AGG | - | chr1_4:4350457-4350476 | None:intergenic | 40.0% |
| !!! | CATCGGCTTTTAAGATTGGA+GGG | - | chr1_4:4350557-4350576 | None:intergenic | 40.0% |
| !!! | CATCCATCGGCTTTTAAGAT+TGG | - | chr1_4:4350561-4350580 | None:intergenic | 40.0% |
| GATGACACTGTCATTCTTGA+CGG | + | chr1_4:4350914-4350933 | Msa0144810:CDS | 40.0% | |
| TATTGAGGAAAGATGTGAGC+AGG | + | chr1_4:4350955-4350974 | Msa0144810:CDS | 40.0% | |
| AAGCATATGCACCTTAAGCA+CGG | - | chr1_4:4351178-4351197 | None:intergenic | 40.0% | |
| !! | ACCTGACTTTTGAAGATTGG+AGG | + | chr1_4:4351284-4351303 | Msa0144810:intron | 40.0% |
| TCCTCCAATCTTCAAAAGTC+AGG | - | chr1_4:4351288-4351307 | None:intergenic | 40.0% | |
| !! | AGCTGAAGTTGGTGAGAAAA+AGG | + | chr1_4:4351316-4351335 | Msa0144810:CDS | 40.0% |
| AGCTGCCTTTGTTGCATTTA+AGG | - | chr1_4:4351357-4351376 | None:intergenic | 40.0% | |
| !! | GTCGGTGCTAATAATTTACC+AGG | - | chr1_4:4351398-4351417 | None:intergenic | 40.0% |
| ! | AAATGTATGTTTTGCGCAGG+TGG | + | chr1_4:4351458-4351477 | Msa0144810:intron | 40.0% |
| !!! | TCTGCACTGTCACTGATTTT+TGG | + | chr1_4:4351591-4351610 | Msa0144810:intron | 40.0% |
| TCTTCTTTCTCCTCTCTTAC+CGG | + | chr1_4:4351629-4351648 | Msa0144810:intron | 40.0% | |
| TTTGATGCAATTGTGTGCAC+AGG | - | chr1_4:4351784-4351803 | None:intergenic | 40.0% | |
| CACACAATTGCATCAAATGC+TGG | + | chr1_4:4351787-4351806 | Msa0144810:CDS | 40.0% | |
| GAACAGGATAATCCTGATCT+TGG | + | chr1_4:4351844-4351863 | Msa0144810:CDS | 40.0% | |
| GAAAAAGGAACACTGACCTT+TGG | - | chr1_4:4351881-4351900 | None:intergenic | 40.0% | |
| CGGCAAAGAAATGGAGAAAA+AGG | - | chr1_4:4351896-4351915 | None:intergenic | 40.0% | |
| !! | CCGTGTTTACTTTTGTCACA+AGG | + | chr1_4:4351913-4351932 | Msa0144810:intron | 40.0% |
| CATCAAAGATGATACACTGC+AGG | - | chr1_4:4352165-4352184 | None:intergenic | 40.0% | |
| CTCCCAAGTGAAGATAAAGA+TGG | + | chr1_4:4352212-4352231 | Msa0144810:CDS | 40.0% | |
| GGACCATCTTTATCTTCACT+TGG | - | chr1_4:4352218-4352237 | None:intergenic | 40.0% | |
| AACCTTGATTAGAGAGAGAG+TGG | + | chr1_4:4352304-4352323 | Msa0144810:intron | 40.0% | |
| TACCACTCTCTCTCTAATCA+AGG | - | chr1_4:4352309-4352328 | None:intergenic | 40.0% | |
| GCTTAGTGTTTACTGACAGA+AGG | + | chr1_4:4352352-4352371 | Msa0144810:three_prime_UTR | 40.0% | |
| ACCAAATCTGTAGGTTAGAG+AGG | + | chr1_4:4352401-4352420 | Msa0144810:three_prime_UTR | 40.0% | |
| TCCTCTCTAACCTACAGATT+TGG | - | chr1_4:4352405-4352424 | None:intergenic | 40.0% | |
| !! | TCCACACTTTGAAGTTTGTC+CGG | + | chr1_4:4352510-4352529 | Msa0144810:three_prime_UTR | 40.0% |
| AACCTTTCACGTAAAAAGCC+CGG | - | chr1_4:4352532-4352551 | None:intergenic | 40.0% | |
| ! | ACCCTTTTACACGCTTCAGA+TGG | + | chr1_4:4347552-4347571 | Msa0144810:intron | 45.0% |
| ATTGATCCAGCCACGTTGAT+TGG | + | chr1_4:4347686-4347705 | Msa0144810:intron | 45.0% | |
| TGCTAGGAACAACGTTCAAC+AGG | + | chr1_4:4347770-4347789 | Msa0144810:CDS | 45.0% | |
| ! | GGGTTGTATAGGTTGGAAGT+AGG | + | chr1_4:4347918-4347937 | Msa0144810:intron | 45.0% |
| ! | TGTATAGGTTGGAAGTAGGG+TGG | + | chr1_4:4347922-4347941 | Msa0144810:intron | 45.0% |
| AGAGATCAAATTTGGCGTGG+AGG | + | chr1_4:4347970-4347989 | Msa0144810:CDS | 45.0% | |
| GCTCGTGCTTTGATGCTTAA+GGG | + | chr1_4:4347992-4348011 | Msa0144810:CDS | 45.0% | |
| TTACTTTAACAGCCTCAGCG+AGG | - | chr1_4:4348027-4348046 | None:intergenic | 45.0% | |
| !! | TCTTTCACATGGGTTAGCAG+GGG | + | chr1_4:4348083-4348102 | Msa0144810:intron | 45.0% |
| CACATTGCGGCCCTAAAAAT+AGG | - | chr1_4:4348333-4348352 | None:intergenic | 45.0% | |
| !!! | CTATTTTTAGGGCCGCAATG+TGG | + | chr1_4:4348331-4348350 | Msa0144810:intron | 45.0% |
| GCTCCTAAAGTGACCAAAGA+TGG | + | chr1_4:4348374-4348393 | Msa0144810:CDS | 45.0% | |
| AGCAACCTGCTTTACAAGAC+TGG | - | chr1_4:4348453-4348472 | None:intergenic | 45.0% | |
| AATGCTACCAATGATGTGGC+TGG | + | chr1_4:4348473-4348492 | Msa0144810:CDS | 45.0% | |
| TGAGTGGTCTAAATGTTGGC+AGG | + | chr1_4:4348667-4348686 | Msa0144810:intron | 45.0% | |
| CCATATTTATACCTCGCCTC+AGG | - | chr1_4:4348774-4348793 | None:intergenic | 45.0% | |
| CCTGAGGCGAGGTATAAATA+TGG | + | chr1_4:4348771-4348790 | Msa0144810:CDS | 45.0% | |
| ! | CACTTCTGAAGAAATAGCCC+AGG | + | chr1_4:4348843-4348862 | Msa0144810:CDS | 45.0% |
| AGGAGATGTAGTGAGCAAGA+AGG | + | chr1_4:4348907-4348926 | Msa0144810:intron | 45.0% | |
| GCTAATGGGGACAGAGAAAT+TGG | + | chr1_4:4348988-4349007 | Msa0144810:CDS | 45.0% | |
| ! | ACTTTTGAGCTATGCCAGGA+TGG | + | chr1_4:4349354-4349373 | Msa0144810:intron | 45.0% |
| CAAGACATTGCACAACGAGT+TGG | + | chr1_4:4349377-4349396 | Msa0144810:CDS | 45.0% | |
| !!! | GGCGGTGATGTGCTATTTTT+CGG | + | chr1_4:4349956-4349975 | Msa0144810:intron | 45.0% |
| !!! | GCGGTGATGTGCTATTTTTC+GGG | + | chr1_4:4349957-4349976 | Msa0144810:intron | 45.0% |
| ! | TTCTGGTGATGAGGAAGTGT+TGG | - | chr1_4:4350224-4350243 | None:intergenic | 45.0% |
| !! | GGTCTTTGTTTCTGGTGATG+AGG | - | chr1_4:4350233-4350252 | None:intergenic | 45.0% |
| ATCCTAAATAAGCTTCGCGC+CGG | + | chr1_4:4350302-4350321 | Msa0144810:CDS | 45.0% | |
| ! | CCGATTTTCACCAAAACCAG+GGG | - | chr1_4:4350455-4350474 | None:intergenic | 45.0% |
| !!! | CCCCTGGTTTTGGTGAAAAT+CGG | + | chr1_4:4350452-4350471 | Msa0144810:CDS | 45.0% |
| AAATCGGAAATCTGGTCTCC+AGG | + | chr1_4:4350468-4350487 | Msa0144810:CDS | 45.0% | |
| CTGTAAGAACAGCAAGATCC+TGG | - | chr1_4:4350489-4350508 | None:intergenic | 45.0% | |
| !! | CAGGATCTTGCTGTTCTTAC+AGG | + | chr1_4:4350487-4350506 | Msa0144810:CDS | 45.0% |
| !! | GATCTTGCTGTTCTTACAGG+AGG | + | chr1_4:4350490-4350509 | Msa0144810:CDS | 45.0% |
| !!! | CCATCGGCTTTTAAGATTGG+AGG | - | chr1_4:4350558-4350577 | None:intergenic | 45.0% |
| CCTCCAATCTTAAAAGCCGA+TGG | + | chr1_4:4350555-4350574 | Msa0144810:intron | 45.0% | |
| CAGCTTATCACAGAAGACCT+TGG | + | chr1_4:4350599-4350618 | Msa0144810:intron | 45.0% | |
| CTTTCTCAAGATTGTGGCCA+AGG | - | chr1_4:4350619-4350638 | None:intergenic | 45.0% | |
| GAGCTAATGCATATCACTCG+AGG | - | chr1_4:4350784-4350803 | None:intergenic | 45.0% | |
| ! | GAAAGATTGGCCAAGCTTTC+TGG | + | chr1_4:4351144-4351163 | Msa0144810:CDS | 45.0% |
| CTTAAAGGAACCGGTAAGAG+AGG | - | chr1_4:4351642-4351661 | None:intergenic | 45.0% | |
| TGCATCAAATGCTGGAGTTG+AGG | + | chr1_4:4351795-4351814 | Msa0144810:CDS | 45.0% | |
| GCATCAAATGCTGGAGTTGA+GGG | + | chr1_4:4351796-4351815 | Msa0144810:CDS | 45.0% | |
| GCAGTCCTAATCACCTTCAA+TGG | - | chr1_4:4352042-4352061 | None:intergenic | 45.0% | |
| !! | CCACACTTTGAAGTTTGTCC+GGG | + | chr1_4:4352511-4352530 | Msa0144810:three_prime_UTR | 45.0% |
| !!! | TTTTATTCATTTTTTTAATT+TGG | + | chr1_4:4347897-4347916 | Msa0144810:intron | 5.0% |
| !!! | TTTATTCATTTTTTTAATTT+GGG | + | chr1_4:4347898-4347917 | Msa0144810:intron | 5.0% |
| CATCACTTGCCTCCAAAGCT+CGG | + | chr1_4:4347479-4347498 | Msa0144810:CDS | 50.0% | |
| ! | GATGACTTACCGAGCTTTGG+AGG | - | chr1_4:4347491-4347510 | None:intergenic | 50.0% |
| GGATATCCAATCAACGTGGC+TGG | - | chr1_4:4347695-4347714 | None:intergenic | 50.0% | |
| GGCTCGTGCTTTGATGCTTA+AGG | + | chr1_4:4347991-4348010 | Msa0144810:CDS | 50.0% | |
| ! | TGGTGCCAGTCTTGTAAAGC+AGG | + | chr1_4:4348445-4348464 | Msa0144810:CDS | 50.0% |
| ACCAATGATGTGGCTGGTGA+TGG | + | chr1_4:4348479-4348498 | Msa0144810:CDS | 50.0% | |
| ACCATCACCAGCCACATCAT+TGG | - | chr1_4:4348483-4348502 | None:intergenic | 50.0% | |
| GTCCATCGCATTCATTCCAG+CGG | - | chr1_4:4348752-4348771 | None:intergenic | 50.0% | |
| GAATGAATGCGATGGACCTG+AGG | + | chr1_4:4348755-4348774 | Msa0144810:CDS | 50.0% | |
| CAAGCCTTAAGAGCAGAGCA+CGG | + | chr1_4:4348812-4348831 | Msa0144810:CDS | 50.0% | |
| TCATCCGTGCTCTGCTCTTA+AGG | - | chr1_4:4348819-4348838 | None:intergenic | 50.0% | |
| TGGGGACCATATCCGCTAAT+GGG | + | chr1_4:4348974-4348993 | Msa0144810:CDS | 50.0% | |
| ! | TCTGTCCCCATTAGCGGATA+TGG | - | chr1_4:4348983-4349002 | None:intergenic | 50.0% |
| TATGCCATGCACTCTCATGC+TGG | + | chr1_4:4349325-4349344 | Msa0144810:intron | 50.0% | |
| ATGCCATGCACTCTCATGCT+GGG | + | chr1_4:4349326-4349345 | Msa0144810:intron | 50.0% | |
| TGTGCAATGTCTTGCCATCC+TGG | - | chr1_4:4349371-4349390 | None:intergenic | 50.0% | |
| GAAGGAATGAAGCTTGACCG+AGG | + | chr1_4:4349408-4349427 | Msa0144810:CDS | 50.0% | |
| !!! | TCCCCACTATATTTTGGGGC+TGG | + | chr1_4:4349935-4349954 | Msa0144810:intron | 50.0% |
| GCCAGCCCCAAAATATAGTG+GGG | - | chr1_4:4349939-4349958 | None:intergenic | 50.0% | |
| CGCCAGCCCCAAAATATAGT+GGG | - | chr1_4:4349940-4349959 | None:intergenic | 50.0% | |
| !!! | CCACTATATTTTGGGGCTGG+CGG | + | chr1_4:4349938-4349957 | Msa0144810:intron | 50.0% |
| !! | GGTGATGAGGAAGTGTTGGT+CGG | - | chr1_4:4350220-4350239 | None:intergenic | 50.0% |
| TTCCGGCGCGAAGCTTATTT+AGG | - | chr1_4:4350307-4350326 | None:intergenic | 50.0% | |
| ! | ACCAAAACCAGGGGCTTTGA+TGG | - | chr1_4:4350446-4350465 | None:intergenic | 50.0% |
| ACTGTCATTCTTGACGGTGC+TGG | + | chr1_4:4350920-4350939 | Msa0144810:CDS | 50.0% | |
| ! | AGATTGGCCAAGCTTTCTGG+TGG | + | chr1_4:4351147-4351166 | Msa0144810:CDS | 50.0% |
| GGAGCTAGTGAAGCTGAAGT+TGG | + | chr1_4:4351305-4351324 | Msa0144810:CDS | 50.0% | |
| TGCAACAAAGGCAGCTGTAG+AGG | + | chr1_4:4351361-4351380 | Msa0144810:CDS | 50.0% | |
| AACAAAGGCAGCTGTAGAGG+AGG | + | chr1_4:4351364-4351383 | Msa0144810:CDS | 50.0% | |
| ACAAAGGCAGCTGTAGAGGA+GGG | + | chr1_4:4351365-4351384 | Msa0144810:CDS | 50.0% | |
| ! | TGTATGTTTTGCGCAGGTGG+TGG | + | chr1_4:4351461-4351480 | Msa0144810:intron | 50.0% |
| AAATGCTGGAGTTGAGGGTG+CGG | + | chr1_4:4351801-4351820 | Msa0144810:CDS | 50.0% | |
| GCAGCATCGTAACCAAGATC+AGG | - | chr1_4:4351859-4351878 | None:intergenic | 50.0% | |
| CTTGGTTACGATGCTGCCAA+AGG | + | chr1_4:4351862-4351881 | Msa0144810:CDS | 50.0% | |
| GAAGGTGATTAGGACTGCCT+TGG | + | chr1_4:4352044-4352063 | Msa0144810:CDS | 50.0% | |
| TTACCTGGCTGCATCAACCA+AGG | - | chr1_4:4352064-4352083 | None:intergenic | 50.0% | |
| AGCAGAGGGACCAAATCTGT+AGG | + | chr1_4:4352392-4352411 | Msa0144810:three_prime_UTR | 50.0% | |
| CCCGGACAAACTTCAAAGTG+TGG | - | chr1_4:4352514-4352533 | None:intergenic | 50.0% | |
| ! | GTCCGGGCTTTTTACGTGAA+AGG | + | chr1_4:4352527-4352546 | Msa0144810:three_prime_UTR | 50.0% |
| AGGTTGGAAGTAGGGTGGCA+TGG | + | chr1_4:4347927-4347946 | Msa0144810:intron | 55.0% | |
| TGCCGCTGGAATGAATGCGA+TGG | + | chr1_4:4348747-4348766 | Msa0144810:CDS | 55.0% | |
| GTGGGGACCATATCCGCTAA+TGG | + | chr1_4:4348973-4348992 | Msa0144810:CDS | 55.0% | |
| GGGGACCATATCCGCTAATG+GGG | + | chr1_4:4348975-4348994 | Msa0144810:CDS | 55.0% | |
| ! | GATCCCAGCATGAGAGTGCA+TGG | - | chr1_4:4349332-4349351 | None:intergenic | 55.0% |
| CCGCCAGCCCCAAAATATAG+TGG | - | chr1_4:4349941-4349960 | None:intergenic | 55.0% | |
| TAAGCTTCGCGCCGGAATCA+AGG | + | chr1_4:4350310-4350329 | Msa0144810:CDS | 55.0% | |
| ! | GCCATCAAAGCCCCTGGTTT+TGG | + | chr1_4:4350442-4350461 | Msa0144810:CDS | 55.0% |
| GGCAACACCACCAGAAAGCT+TGG | - | chr1_4:4351157-4351176 | None:intergenic | 55.0% | |
| !! | TGGTGGTGTTGCCGTGCTTA+AGG | + | chr1_4:4351164-4351183 | Msa0144810:CDS | 55.0% |
| ! | GTAGAGGAGGGCATAGTACC+TGG | + | chr1_4:4351377-4351396 | Msa0144810:CDS | 55.0% |
| ! | GTTGAGGGTGCGGTTGTTGT+TGG | + | chr1_4:4351811-4351830 | Msa0144810:CDS | 55.0% |
| !! | GGGTGTTGAAGACCTCGCTG+AGG | + | chr1_4:4348012-4348031 | Msa0144810:CDS | 60.0% |
| GGCTGCAAATCAGTTGCCGC+TGG | + | chr1_4:4348733-4348752 | Msa0144810:CDS | 60.0% | |
| AATGCGATGGACCTGAGGCG+AGG | + | chr1_4:4348760-4348779 | Msa0144810:CDS | 60.0% | |
| GTGTGTGCCATCAAAGCCCC+TGG | + | chr1_4:4350436-4350455 | Msa0144810:CDS | 60.0% | |
| ! | CTGCCTTGGTTGATGCAGCC+AGG | + | chr1_4:4352058-4352077 | Msa0144810:CDS | 60.0% |
| GATGGTCCTGCTATGCCTGC+TGG | + | chr1_4:4352230-4352249 | Msa0144810:CDS | 60.0% | |
| TCCTGCTATGCCTGCTGGCA+TGG | + | chr1_4:4352235-4352254 | Msa0144810:CDS | 60.0% | |
| CCTGCTATGCCTGCTGGCAT+GGG | + | chr1_4:4352236-4352255 | Msa0144810:CDS | 60.0% | |
| CCCATGCCAGCAGGCATAGC+AGG | - | chr1_4:4352239-4352258 | None:intergenic | 65.0% | |
| GCTATGCCTGCTGGCATGGG+TGG | + | chr1_4:4352239-4352258 | Msa0144810:CDS | 65.0% | |
| CCTGCTGGCATGGGTGGCAT+GGG | + | chr1_4:4352245-4352264 | Msa0144810:CDS | 65.0% | |
| GCCTGCTGGCATGGGTGGCA+TGG | + | chr1_4:4352244-4352263 | Msa0144810:CDS | 70.0% | |
| CCCATGCCACCCATGCCAGC+AGG | - | chr1_4:4352248-4352267 | None:intergenic | 70.0% | |
| GCTGGCATGGGTGGCATGGG+TGG | + | chr1_4:4352248-4352267 | Msa0144810:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4347463 | 4352606 | 4347463 | ID=Msa0144810;Name=Msa0144810 |
| chr1_4 | mRNA | 4347463 | 4352606 | 4347463 | ID=Msa0144810-mRNA-1;Parent=Msa0144810;Name=Msa0144810-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.88|0.84|1|0.94|0.89|19|305|576 |
| chr1_4 | exon | 4347463 | 4347500 | 4347463 | ID=Msa0144810-mRNA-1:exon:1827;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4347767 | 4347791 | 4347767 | ID=Msa0144810-mRNA-1:exon:1828;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4347929 | 4348060 | 4347929 | ID=Msa0144810-mRNA-1:exon:1829;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4348341 | 4348500 | 4348341 | ID=Msa0144810-mRNA-1:exon:1830;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4348689 | 4348864 | 4348689 | ID=Msa0144810-mRNA-1:exon:1831;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4348973 | 4349068 | 4348973 | ID=Msa0144810-mRNA-1:exon:1832;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4349372 | 4349476 | 4349372 | ID=Msa0144810-mRNA-1:exon:1833;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4350074 | 4350160 | 4350074 | ID=Msa0144810-mRNA-1:exon:1834;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4350242 | 4350331 | 4350242 | ID=Msa0144810-mRNA-1:exon:1835;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4350436 | 4350516 | 4350436 | ID=Msa0144810-mRNA-1:exon:1836;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4350602 | 4350670 | 4350602 | ID=Msa0144810-mRNA-1:exon:1837;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4350899 | 4350976 | 4350899 | ID=Msa0144810-mRNA-1:exon:1838;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4351090 | 4351185 | 4351090 | ID=Msa0144810-mRNA-1:exon:1839;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4351299 | 4351398 | 4351299 | ID=Msa0144810-mRNA-1:exon:1840;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4351477 | 4351580 | 4351477 | ID=Msa0144810-mRNA-1:exon:1841;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4351778 | 4351883 | 4351778 | ID=Msa0144810-mRNA-1:exon:1842;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4352001 | 4352079 | 4352001 | ID=Msa0144810-mRNA-1:exon:1843;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4352169 | 4352280 | 4352169 | ID=Msa0144810-mRNA-1:exon:1844;Parent=Msa0144810-mRNA-1 |
| chr1_4 | exon | 4352305 | 4352606 | 4352305 | ID=Msa0144810-mRNA-1:exon:1845;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4347463 | 4347500 | 4347463 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4347767 | 4347791 | 4347767 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4347929 | 4348060 | 4347929 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4348341 | 4348500 | 4348341 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4348689 | 4348864 | 4348689 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4348973 | 4349068 | 4348973 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4349372 | 4349476 | 4349372 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4350074 | 4350160 | 4350074 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4350242 | 4350331 | 4350242 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4350436 | 4350516 | 4350436 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4350602 | 4350670 | 4350602 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4350899 | 4350976 | 4350899 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4351090 | 4351185 | 4351090 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4351299 | 4351398 | 4351299 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4351477 | 4351580 | 4351477 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4351778 | 4351883 | 4351778 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4352001 | 4352079 | 4352001 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | CDS | 4352169 | 4352277 | 4352169 | ID=Msa0144810-mRNA-1:cds;Parent=Msa0144810-mRNA-1 |
| chr1_4 | three_prime_UTR | 4352278 | 4352280 | 4352278 | ID=Msa0144810-mRNA-1:three_prime_utr;Parent=Msa0144810-mRNA-1 |
| chr1_4 | three_prime_UTR | 4352305 | 4352606 | 4352305 | ID=Msa0144810-mRNA-1:three_prime_utr;Parent=Msa0144810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
