Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686660 | XP_024637950.1 | 97.666 | 557 | 9 | 2 | 1 | 557 | 1 | 553 | 0.0 | 1092 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686660 | sp|O04658|NOP5A_ARATH | 75.494 | 506 | 101 | 3 | 1 | 506 | 1 | 483 | 0.0 | 747 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686660 | G7JIJ7 | 97.666 | 557 | 9 | 2 | 1 | 557 | 1 | 553 | 0.0 | 1092 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016340 | Msa0686660 | 0.802454 | 5.568836e-49 | -8.615850e-47 |
| Msa0071760 | Msa0686660 | 0.898881 | 3.435178e-77 | -8.615850e-47 |
| Msa0089540 | Msa0686660 | 0.816386 | 5.679330e-52 | -8.615850e-47 |
| Msa0114600 | Msa0686660 | 0.831869 | 1.307176e-55 | -8.615850e-47 |
| Msa0602900 | Msa0686660 | 0.817238 | 3.658330e-52 | -8.615850e-47 |
| Msa0643960 | Msa0686660 | 0.817065 | 4.000136e-52 | -8.615850e-47 |
| Msa0686660 | Msa0790450 | 0.803918 | 2.771924e-49 | -8.615850e-47 |
| Msa0686660 | Msa0929700 | 0.817855 | 2.655839e-52 | -8.615850e-47 |
| Msa0686660 | Msa1004780 | 0.850336 | 1.813496e-60 | -8.615850e-47 |
| Msa0686660 | Msa1085850 | 0.814012 | 1.913074e-51 | -8.615850e-47 |
| Msa0686660 | Msa1136880 | 0.816812 | 4.559470e-52 | -8.615850e-47 |
| Msa0686660 | Msa1136980 | 0.801988 | 6.942839e-49 | -8.615850e-47 |
| Msa0686660 | Msa1158630 | 0.802384 | 5.756618e-49 | -8.615850e-47 |
| Msa0686660 | Msa1433590 | 0.806415 | 8.317518e-50 | -8.615850e-47 |
| Msa0686660 | Msa1444240 | 0.827087 | 1.899021e-54 | -8.615850e-47 |
| Msa0144800 | Msa0686660 | 0.800979 | 1.117903e-48 | -8.615850e-47 |
| Msa0377370 | Msa0686660 | 0.819587 | 1.074211e-52 | -8.615850e-47 |
| Msa0388250 | Msa0686660 | 0.800321 | 1.522728e-48 | -8.615850e-47 |
| Msa0482200 | Msa0686660 | 0.821147 | 4.712258e-53 | -8.615850e-47 |
| Msa0270160 | Msa0686660 | 0.800175 | 1.630616e-48 | -8.615850e-47 |
| Msa0281330 | Msa0686660 | 0.823351 | 1.451421e-53 | -8.615850e-47 |
| Msa0281370 | Msa0686660 | 0.823424 | 1.395473e-53 | -8.615850e-47 |
| Msa0313060 | Msa0686660 | 0.815347 | 9.684406e-52 | -8.615850e-47 |
| Msa0547920 | Msa0686660 | 0.805068 | 1.595966e-49 | -8.615850e-47 |
| Msa0550490 | Msa0686660 | 0.932176 | 1.261376e-94 | -8.615850e-47 |
| Msa0573550 | Msa0686660 | 0.806631 | 7.491273e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686660 | MtrunA17_Chr4g0035431 | 97.666 | 557 | 9 | 2 | 1 | 557 | 1 | 553 | 0.0 | 1092 |
| Msa0686660 | MtrunA17_Chr5g0397481 | 80.169 | 590 | 84 | 2 | 1 | 557 | 1 | 590 | 0.0 | 881 |
| Msa0686660 | MtrunA17_Chr5g0397491 | 71.429 | 154 | 42 | 1 | 10 | 161 | 6 | 159 | 1.56e-68 | 218 |
| Msa0686660 | MtrunA17_Chr7g0228641 | 32.287 | 223 | 150 | 1 | 159 | 380 | 95 | 317 | 1.86e-29 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686660 | AT5G27120.1 | 75.494 | 506 | 101 | 3 | 1 | 506 | 1 | 483 | 0.0 | 747 |
| Msa0686660 | AT3G05060.1 | 73.810 | 504 | 109 | 1 | 1 | 504 | 2 | 482 | 0.0 | 734 |
| Msa0686660 | AT5G27140.2 | 57.290 | 487 | 147 | 4 | 1 | 486 | 1 | 427 | 0.0 | 518 |
| Msa0686660 | AT5G27140.1 | 57.230 | 491 | 146 | 6 | 1 | 490 | 1 | 428 | 3.16e-180 | 515 |
| Msa0686660 | AT1G56110.1 | 45.742 | 411 | 200 | 7 | 1 | 393 | 3 | 408 | 7.05e-115 | 351 |
| Msa0686660 | AT3G12860.1 | 44.499 | 409 | 208 | 5 | 1 | 393 | 3 | 408 | 1.49e-111 | 342 |
| Msa0686660 | AT1G60170.1 | 27.948 | 229 | 162 | 1 | 159 | 387 | 95 | 320 | 1.24e-21 | 98.6 |
Find 153 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACCAAACCCTAATTT+AGG | 0.123858 | 4_4:-51210938 | Msa0686660:five_prime_UTR |
| ATCAGGTACAAATTCGAATT+TGG | 0.128688 | 4_4:+51210891 | None:intergenic |
| TGAAGCTTAAACCCTAAATT+AGG | 0.186773 | 4_4:+51210926 | None:intergenic |
| ATGAATCCTTATTTATTTAA+TGG | 0.209120 | 4_4:-51206409 | Msa0686660:three_prime_UTR |
| CTTATCCCATTAAATAAATA+AGG | 0.229729 | 4_4:+51206403 | None:intergenic |
| AAAGAAAGAAAAGAAGAAAA+AGG | 0.230780 | 4_4:-51206792 | Msa0686660:CDS |
| TTATGTTTGTGAATGGAAAT+AGG | 0.241181 | 4_4:-51206326 | Msa0686660:three_prime_UTR |
| GGCTATCAGGTGTGATGCAC+TGG | 0.262961 | 4_4:-51207260 | Msa0686660:CDS |
| TGACTTCAGTGGATAATATA+TGG | 0.263866 | 4_4:-51206368 | Msa0686660:three_prime_UTR |
| CAAAGACTGCTTTGGCTATC+AGG | 0.264189 | 4_4:-51207273 | Msa0686660:CDS |
| CCCAACCATAGCAGTCAAAT+TGG | 0.271023 | 4_4:+51207513 | None:intergenic |
| GAATATTATTAAGGAGAAAT+TGG | 0.271601 | 4_4:-51209412 | Msa0686660:intron |
| TGAATCCTTATTTATTTAAT+GGG | 0.290361 | 4_4:-51206408 | Msa0686660:three_prime_UTR |
| AAAGCTTGGGAATATTATTA+AGG | 0.301937 | 4_4:-51209421 | Msa0686660:CDS |
| TCAGGTACAAATTCGAATTT+GGG | 0.306320 | 4_4:+51210892 | None:intergenic |
| TTTCTCCTCCATTCGAAGTA+TGG | 0.312200 | 4_4:+51206651 | None:intergenic |
| CTTCACCAAACCCTAATTTA+GGG | 0.323684 | 4_4:-51210937 | Msa0686660:five_prime_UTR |
| TTGTCATATGCTTCGATCTT+GGG | 0.331868 | 4_4:+51207051 | None:intergenic |
| GGTAGTACCGTGCAGATTCT+TGG | 0.334079 | 4_4:-51207427 | Msa0686660:CDS |
| CTTGTCATATGCTTCGATCT+TGG | 0.340268 | 4_4:+51207050 | None:intergenic |
| ACTTGACAGACCTTGCATAT+TGG | 0.347594 | 4_4:+51207976 | None:intergenic |
| GATGTTGTCAACTATGATTT+TGG | 0.347858 | 4_4:+51207998 | None:intergenic |
| GCTAAACTTCAGCTTGTATC+TGG | 0.349651 | 4_4:+51209172 | None:intergenic |
| GAAGCTTAAACCCTAAATTA+GGG | 0.350432 | 4_4:+51210927 | None:intergenic |
| CGCTTTGCCGGTTCTGCTAA+AGG | 0.358145 | 4_4:-51207078 | Msa0686660:CDS |
| GAAAGAAAAGAAAGAAAAGA+AGG | 0.362346 | 4_4:-51206816 | Msa0686660:CDS |
| ACTATGATCGTTCAGGCTAT+TGG | 0.363794 | 4_4:-51208104 | Msa0686660:CDS |
| TTCATGTTAATGCAATTTGT+AGG | 0.366624 | 4_4:-51206435 | Msa0686660:three_prime_UTR |
| TTAAACCCTAAATTAGGGTT+TGG | 0.367394 | 4_4:+51210932 | None:intergenic |
| ATATCAATGGGAACTGAAAT+TGG | 0.371359 | 4_4:-51207646 | Msa0686660:CDS |
| TTCTTAACAACTTCCTCTTC+CGG | 0.375765 | 4_4:+51206731 | None:intergenic |
| CGTGAAAAGGTGGTTGAATC+AGG | 0.379236 | 4_4:+51210874 | None:intergenic |
| TAATTAATTATGTTTGTGAA+TGG | 0.379604 | 4_4:-51206333 | Msa0686660:three_prime_UTR |
| GGCCTAGTTCTTTGCCTTCA+AGG | 0.381274 | 4_4:+51207100 | None:intergenic |
| ATTTACCATGCATCCTTGAT+TGG | 0.385846 | 4_4:-51207343 | Msa0686660:CDS |
| GTCAGAGGAGGTTGAGGCAG+AGG | 0.395543 | 4_4:-51207686 | Msa0686660:CDS |
| CCATGCATCCTTGATTGGTC+AGG | 0.410857 | 4_4:-51207338 | Msa0686660:CDS |
| GCAGCTACTTTGCTAATTGA+TGG | 0.411124 | 4_4:-51209516 | Msa0686660:CDS |
| TGTTCATAACAATGCTGTTA+TGG | 0.413565 | 4_4:-51209294 | Msa0686660:CDS |
| AAAGAACTAGGCCGCTTTGC+CGG | 0.414173 | 4_4:-51207090 | Msa0686660:CDS |
| CCAATTTGACTGCTATGGTT+GGG | 0.414603 | 4_4:-51207513 | Msa0686660:CDS |
| GCTATGGTTGGGGAGCTTGT+TGG | 0.416805 | 4_4:-51207502 | Msa0686660:CDS |
| TGAGACAAACCCAAGCTCAT+AGG | 0.424290 | 4_4:+51209203 | None:intergenic |
| TTGTCAGTAACAGGAGGCTC+TGG | 0.426836 | 4_4:+51206842 | None:intergenic |
| TATTAGAGAGCTCTGTGATC+AGG | 0.429227 | 4_4:-51207605 | Msa0686660:CDS |
| TATGTATCAGCTAATCAATA+TGG | 0.435818 | 4_4:-51206524 | Msa0686660:three_prime_UTR |
| GGGCTTCCCTTTAGCAGAAC+CGG | 0.437955 | 4_4:+51207071 | None:intergenic |
| GCAACACTCTTCTCAACTTA+AGG | 0.438844 | 4_4:-51210849 | Msa0686660:intron |
| AAGCATGCTACTCCAAAGTA+TGG | 0.441688 | 4_4:-51207370 | Msa0686660:CDS |
| CTTTGGTTCAATAACTGAAT+CGG | 0.444467 | 4_4:+51206892 | None:intergenic |
| CACTGCAGATGCTGCTAGAA+AGG | 0.446366 | 4_4:-51209758 | Msa0686660:intron |
| TCCATTGCAGAATTAGACTT+TGG | 0.447306 | 4_4:+51206875 | None:intergenic |
| TGCAGCTTGAAGCACGTTTG+AGG | 0.448590 | 4_4:-51207125 | Msa0686660:intron |
| GGTGGATACTATGATCGTTC+AGG | 0.449376 | 4_4:-51208111 | Msa0686660:CDS |
| GACATGGCCCCTATGAGCTT+GGG | 0.453354 | 4_4:-51209212 | Msa0686660:CDS |
| ACTTGCTGCAAAGACTGCTT+TGG | 0.456044 | 4_4:-51207281 | Msa0686660:CDS |
| AGCTACTAATATACCTTAGC+TGG | 0.456229 | 4_4:+51206994 | None:intergenic |
| AGACATGGCCCCTATGAGCT+TGG | 0.460296 | 4_4:-51209213 | Msa0686660:CDS |
| GAGGAAGAAGCAGGCAGAGG+AGG | 0.461221 | 4_4:-51206618 | Msa0686660:CDS |
| GCAAGATAACACCATGGGAT+TGG | 0.463401 | 4_4:-51207230 | Msa0686660:CDS |
| GCTTTGCCGGTTCTGCTAAA+GGG | 0.467457 | 4_4:-51207077 | Msa0686660:CDS |
| GAGACAAACCCAAGCTCATA+GGG | 0.467946 | 4_4:+51209204 | None:intergenic |
| ACTAAATAGAACAAAGCATA+TGG | 0.469149 | 4_4:+51206298 | None:intergenic |
| AAAGAAGGAATCTACTGAAA+AGG | 0.469310 | 4_4:-51206693 | Msa0686660:CDS |
| AGTTCAAGGGGAAAATTTCT+CGG | 0.473372 | 4_4:-51207306 | Msa0686660:CDS |
| TATGACAAGGATAGAAAGAA+AGG | 0.477667 | 4_4:-51207036 | Msa0686660:CDS |
| TTGCAAAAGTGGATCTGAGA+TGG | 0.480004 | 4_4:+51206273 | None:intergenic |
| TGCAAAAGTGGATCTGAGAT+GGG | 0.480064 | 4_4:+51206274 | None:intergenic |
| TGAAGATGTTGTTGAGGAAC+CGG | 0.485671 | 4_4:-51206750 | Msa0686660:CDS |
| AGCTGGAGTTATCAGTCCTC+CGG | 0.492874 | 4_4:+51207011 | None:intergenic |
| GGAGGTTGAGGCAGAGGTGA+AGG | 0.493001 | 4_4:-51207680 | Msa0686660:CDS |
| CCAACCATAGCAGTCAAATT+GGG | 0.494028 | 4_4:+51207514 | None:intergenic |
| CAATTTGACTGCTATGGTTG+GGG | 0.494927 | 4_4:-51207512 | Msa0686660:CDS |
| GGTGTTGCTGAGTCAAAGCT+TGG | 0.496488 | 4_4:-51209435 | Msa0686660:CDS |
| ATATATTATCCACTGAAGTC+AGG | 0.498050 | 4_4:+51206370 | None:intergenic |
| TGCAAGGTCTGTCAAGTTGA+TGG | 0.498706 | 4_4:-51207970 | Msa0686660:CDS |
| CCCAATTTGACTGCTATGGT+TGG | 0.502179 | 4_4:-51207514 | Msa0686660:CDS |
| ATTTATTAAGCTTCCTCCAT+GGG | 0.503415 | 4_4:+51207465 | None:intergenic |
| AGTAGCTGCCTCTAGAGCTT+CGG | 0.504643 | 4_4:+51209530 | None:intergenic |
| TGCACCCAATTTGACTGCTA+TGG | 0.506074 | 4_4:-51207518 | Msa0686660:CDS |
| TGGAGCGGCCTGACCAATCA+AGG | 0.509639 | 4_4:+51207330 | None:intergenic |
| GAAGCTTCAGTGATATCAAT+GGG | 0.510808 | 4_4:-51207658 | Msa0686660:CDS |
| CACTTTGAAAATAGCAAACC+CGG | 0.515199 | 4_4:+51210245 | None:intergenic |
| TACTGTTTGAAACACCGGCC+GGG | 0.515816 | 4_4:-51210263 | Msa0686660:CDS |
| CATTGTGAAAATGAAACGTT+AGG | 0.525745 | 4_4:-51209456 | Msa0686660:CDS |
| GGAAGCTTCAGTGATATCAA+TGG | 0.526035 | 4_4:-51207659 | Msa0686660:CDS |
| AATTGATGGCAAAGCTAGCA+AGG | 0.527868 | 4_4:-51209502 | Msa0686660:CDS |
| GATTTATTAAGCTTCCTCCA+TGG | 0.528986 | 4_4:+51207464 | None:intergenic |
| AAAGAGGAAGAAGCAGGCAG+AGG | 0.529182 | 4_4:-51206621 | Msa0686660:CDS |
| TGTTGTTGAGGAACCGGAAG+AGG | 0.530941 | 4_4:-51206744 | Msa0686660:CDS |
| AGCAGTCAAATTGGGTGCAA+TGG | 0.533807 | 4_4:+51207522 | None:intergenic |
| ATGCCATGAGGGTTCGTGAA+TGG | 0.538629 | 4_4:-51208046 | Msa0686660:CDS |
| GCACGTTTGAGGAACCTTGA+AGG | 0.539843 | 4_4:-51207114 | Msa0686660:CDS |
| TACATATATTTCGCTCTAGT+CGG | 0.544218 | 4_4:+51206541 | None:intergenic |
| ATAAATCTTGCAAAGCAGCC+TGG | 0.545223 | 4_4:-51207448 | Msa0686660:CDS |
| AACCTTGAAGGCAAAGAACT+AGG | 0.547172 | 4_4:-51207102 | Msa0686660:CDS |
| GGTGTGATGCACTGGGTGAC+GGG | 0.547776 | 4_4:-51207252 | Msa0686660:CDS |
| GCTTCTACTGTTTGAAACAC+CGG | 0.548474 | 4_4:-51210268 | Msa0686660:CDS |
| AAGAGTGTTGCGGCGTGAAA+AGG | 0.550147 | 4_4:+51210861 | None:intergenic |
| TCAGGCCGCTCCAAAGTTCA+AGG | 0.553933 | 4_4:-51207320 | Msa0686660:CDS |
| AGGAAAGCTTTCTAAAGTTG+AGG | 0.554316 | 4_4:-51210214 | Msa0686660:intron |
| AGGTGTGATGCACTGGGTGA+CGG | 0.555737 | 4_4:-51207253 | Msa0686660:CDS |
| GTGTTGCTGAGTCAAAGCTT+GGG | 0.558313 | 4_4:-51209434 | Msa0686660:CDS |
| AAGGATAGAAAGAAAGGAGC+CGG | 0.559519 | 4_4:-51207030 | Msa0686660:CDS |
| CTACTGTTTGAAACACCGGC+CGG | 0.563221 | 4_4:-51210264 | Msa0686660:CDS |
| AGAATCTGCACGGTACTACC+AGG | 0.563552 | 4_4:+51207430 | None:intergenic |
| AATGGAGACCATACTTCGAA+TGG | 0.570280 | 4_4:-51206659 | Msa0686660:CDS |
| GAAAAGGCAGAGGTGCAGAA+TGG | 0.571720 | 4_4:-51206677 | Msa0686660:CDS |
| TCTATGATTATCTCAAGAGT+AGG | 0.573998 | 4_4:-51207552 | Msa0686660:CDS |
| GGTGCTCGCCTCATTGCCCA+TGG | 0.577178 | 4_4:-51207481 | Msa0686660:CDS |
| CAATTGAATGAACTCATAGC+AGG | 0.584388 | 4_4:-51209248 | Msa0686660:CDS |
| TTCGAATTTGGGGATTTCCG+TGG | 0.588460 | 4_4:+51210903 | None:intergenic |
| ACCAAAGTCTAATTCTGCAA+TGG | 0.590650 | 4_4:-51206876 | Msa0686660:CDS |
| GCTATCAGGTGTGATGCACT+GGG | 0.592574 | 4_4:-51207259 | Msa0686660:CDS |
| GAATACTTCCGAAGCTCTAG+AGG | 0.594176 | 4_4:-51209538 | Msa0686660:CDS |
| AGCTTCCTCCATGGGCAATG+AGG | 0.595189 | 4_4:+51207473 | None:intergenic |
| TGGTAAATGAGACCATACTT+TGG | 0.597333 | 4_4:+51207358 | None:intergenic |
| ATGAGGGTTCGTGAATGGTA+TGG | 0.601117 | 4_4:-51208041 | Msa0686660:CDS |
| CAGGCCGCTCCAAAGTTCAA+GGG | 0.602064 | 4_4:-51207319 | Msa0686660:CDS |
| ATACCATTCACGAACCCTCA+TGG | 0.603195 | 4_4:+51208043 | None:intergenic |
| GGAATCTACTGAAAAGGCAG+AGG | 0.607137 | 4_4:-51206687 | Msa0686660:CDS |
| GCTGAAGTTTAGCGCTGACA+AGG | 0.610350 | 4_4:-51209162 | Msa0686660:intron |
| GGGATTGGAAAACAGAGCTA+AGG | 0.614620 | 4_4:-51207215 | Msa0686660:intron |
| TTGAAAATAGCAAACCCGGC+CGG | 0.617400 | 4_4:+51210249 | None:intergenic |
| GCTGAACACGTATGCCATGA+GGG | 0.618620 | 4_4:-51208057 | Msa0686660:CDS |
| CCTGACCAATCAAGGATGCA+TGG | 0.619510 | 4_4:+51207338 | None:intergenic |
| AGGACTGATAACTCCAGCTA+AGG | 0.620619 | 4_4:-51207007 | Msa0686660:intron |
| GCAAGGTCTGTCAAGTTGAT+GGG | 0.626398 | 4_4:-51207969 | Msa0686660:CDS |
| CAGGTACAAATTCGAATTTG+GGG | 0.627757 | 4_4:+51210893 | None:intergenic |
| CTCGGCACCAAGAATCTGCA+CGG | 0.631244 | 4_4:+51207420 | None:intergenic |
| GCAAAAGTGGATCTGAGATG+GGG | 0.632665 | 4_4:+51206275 | None:intergenic |
| AGTGTTGCGGCGTGAAAAGG+TGG | 0.634974 | 4_4:+51210864 | None:intergenic |
| AGGTCTAGCTGTTCAAGACA+TGG | 0.637643 | 4_4:-51209228 | Msa0686660:CDS |
| GACGGGCAAGATAACACCAT+GGG | 0.638389 | 4_4:-51207235 | Msa0686660:CDS |
| AGGCCGCTCCAAAGTTCAAG+GGG | 0.639325 | 4_4:-51207318 | Msa0686660:CDS |
| TTGACAACATCCAATATGCA+AGG | 0.639726 | 4_4:-51207986 | Msa0686660:CDS |
| TTTCCCCTTGAACTTTGGAG+CGG | 0.639830 | 4_4:+51207315 | None:intergenic |
| CAAGATCGAAGCATATGACA+AGG | 0.641584 | 4_4:-51207049 | Msa0686660:CDS |
| TTAAGTTGAGAAGAGTGTTG+CGG | 0.642630 | 4_4:+51210851 | None:intergenic |
| AGCTGAACACGTATGCCATG+AGG | 0.646581 | 4_4:-51208058 | Msa0686660:CDS |
| CTTTCTAGCAGCATCTGCAG+TGG | 0.650736 | 4_4:+51209759 | None:intergenic |
| GGAGACCATACTTCGAATGG+AGG | 0.650803 | 4_4:-51206656 | Msa0686660:CDS |
| ATTGATGGCAAAGCTAGCAA+GGG | 0.654528 | 4_4:-51209501 | Msa0686660:CDS |
| GGGTTCGTGAATGGTATGGT+TGG | 0.660131 | 4_4:-51208037 | Msa0686660:CDS |
| GCTCGCCTCATTGCCCATGG+AGG | 0.662199 | 4_4:-51207478 | Msa0686660:CDS |
| GATAGAAAGAAAGGAGCCGG+AGG | 0.682277 | 4_4:-51207027 | Msa0686660:CDS |
| GGTGGTTGAAGATGTTGTTG+AGG | 0.689600 | 4_4:-51206756 | Msa0686660:CDS |
| TTAGGGTTTAAGCTTCACCA+CGG | 0.694248 | 4_4:-51210920 | Msa0686660:five_prime_UTR |
| AGACAAACCCAAGCTCATAG+GGG | 0.697188 | 4_4:+51209205 | None:intergenic |
| TGCAAAGCTTGATTTCTCCG+AGG | 0.702184 | 4_4:-51207931 | Msa0686660:intron |
| CTTTAGCAGAACCGGCAAAG+CGG | 0.708275 | 4_4:+51207079 | None:intergenic |
| TGACGGGCAAGATAACACCA+TGG | 0.727962 | 4_4:-51207236 | Msa0686660:CDS |
| GCTGTTATGGAGTTGATGAG+AGG | 0.738756 | 4_4:-51209281 | Msa0686660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTGCTTTATTTTTTC+AGG | - | chr4_4:51206879-51206898 | Msa0686660:CDS | 15.0% |
| !!! | TTTTCAGGTTTATTAATTTA+AGG | - | chr4_4:51206894-51206913 | Msa0686660:CDS | 15.0% |
| !!! | TTTTCAAATTCAAAATGTAT+AGG | - | chr4_4:51207280-51207299 | Msa0686660:CDS | 15.0% |
| !! | AACACTAAATAATCAAATTT+AGG | - | chr4_4:51207602-51207621 | Msa0686660:CDS | 15.0% |
| !!! | TCAAATAGCTAATTTTTTAT+CGG | - | chr4_4:51207855-51207874 | Msa0686660:intron | 15.0% |
| !!! | TATCTATATCTATTTGTTAT+TGG | + | chr4_4:51209347-51209366 | None:intergenic | 15.0% |
| !!! | ATGAATCCTTATTTATTTAA+TGG | - | chr4_4:51210785-51210804 | Msa0686660:intron | 15.0% |
| !!! | TGAATCCTTATTTATTTAAT+GGG | - | chr4_4:51210786-51210805 | Msa0686660:intron | 15.0% |
| !! | TAATTAATTATGTTTGTGAA+TGG | - | chr4_4:51210861-51210880 | Msa0686660:five_prime_UTR | 15.0% |
| !!! | TTGTTCCAATTTAGTTTTTT+AGG | - | chr4_4:51206450-51206469 | Msa0686660:three_prime_UTR | 20.0% |
| !! | AGAAACCTAAAAAACTAAAT+TGG | + | chr4_4:51206458-51206477 | None:intergenic | 20.0% |
| !! | TAACAAAAAATGTACGATTT+AGG | + | chr4_4:51206486-51206505 | None:intergenic | 20.0% |
| !!! | TATATCATTTTGTTCATCAT+CGG | + | chr4_4:51206580-51206599 | None:intergenic | 20.0% |
| !! | CTTGAAATGAAAAGAAAAAA+TGG | + | chr4_4:51207255-51207274 | None:intergenic | 20.0% |
| !! | TGGTAAAATATAAATTGGTT+AGG | + | chr4_4:51207382-51207401 | None:intergenic | 20.0% |
| !!! | GAAGTTGGTAAAATATAAAT+TGG | + | chr4_4:51207387-51207406 | None:intergenic | 20.0% |
| !! | ACTAAATAATCAAATTTAGG+TGG | - | chr4_4:51207605-51207624 | Msa0686660:CDS | 20.0% |
| !! | GAATATTATTAAGGAGAAAT+TGG | - | chr4_4:51207782-51207801 | Msa0686660:intron | 20.0% |
| !!! | ATTTTGTTTAAGAGTAACTT+AGG | + | chr4_4:51207815-51207834 | None:intergenic | 20.0% |
| !! | TTAACTAAAAATCAACTGTT+CGG | - | chr4_4:51208319-51208338 | Msa0686660:intron | 20.0% |
| !! | TTAACTAAAAATCAACTGTT+TGG | - | chr4_4:51208319-51208338 | Msa0686660:intron | 20.0% |
| !!! | GATTTTATCATTTTTTAACC+TGG | - | chr4_4:51208611-51208630 | Msa0686660:intron | 20.0% |
| !!! | ATCATAAAGACAGTTTTATT+CGG | - | chr4_4:51208743-51208762 | Msa0686660:intron | 20.0% |
| !!! | ACTTTATGATGCTTTTTATT+AGG | - | chr4_4:51209062-51209081 | Msa0686660:intron | 20.0% |
| !! | TATGCAATGAGTAAATTAAT+TGG | + | chr4_4:51209317-51209336 | None:intergenic | 20.0% |
| !!! | GGTGTTATTTAATTTTCTAT+TGG | - | chr4_4:51210229-51210248 | Msa0686660:CDS | 20.0% |
| !! | AAAGAAAGAAAAGAAGAAAA+AGG | - | chr4_4:51210402-51210421 | Msa0686660:intron | 20.0% |
| !!! | TTTTTATCTTTCTTTTTGCT+CGG | + | chr4_4:51210622-51210641 | None:intergenic | 20.0% |
| !! | CTTATCCCATTAAATAAATA+AGG | + | chr4_4:51210794-51210813 | None:intergenic | 20.0% |
| !!! | TTTTGTTACTGATTTGTTAG+AGG | - | chr4_4:51206498-51206517 | Msa0686660:intron | 25.0% |
| !!! | TTTGTTACTGATTTGTTAGA+GGG | - | chr4_4:51206499-51206518 | Msa0686660:intron | 25.0% |
| !! | TGTGAGTGTTTTATAGTTTA+TGG | - | chr4_4:51206526-51206545 | Msa0686660:three_prime_UTR | 25.0% |
| !! | GTGAGTGTTTTATAGTTTAT+GGG | - | chr4_4:51206527-51206546 | Msa0686660:three_prime_UTR | 25.0% |
| !! | TGTTTTATAGTTTATGGGTT+TGG | - | chr4_4:51206532-51206551 | Msa0686660:three_prime_UTR | 25.0% |
| ! | AAGACAAAGTATAAATACAG+TGG | + | chr4_4:51207356-51207375 | None:intergenic | 25.0% |
| ! | CTGTATTTATACTTTGTCTT+CGG | - | chr4_4:51207356-51207375 | Msa0686660:CDS | 25.0% |
| !! | TTTTACCAACTTCTTTATAC+AGG | - | chr4_4:51207394-51207413 | Msa0686660:CDS | 25.0% |
| ! | TAAATCCTGTATAAAGAAGT+TGG | + | chr4_4:51207402-51207421 | None:intergenic | 25.0% |
| ! | AAAGCTTGGGAATATTATTA+AGG | - | chr4_4:51207773-51207792 | Msa0686660:intron | 25.0% |
| ! | TTGAAAACATAGTACAACAA+CGG | + | chr4_4:51208106-51208125 | None:intergenic | 25.0% |
| ! | TCATGCAATCTTAAGAATAA+AGG | + | chr4_4:51208261-51208280 | None:intergenic | 25.0% |
| ! | TGCATTATTTCACTTTGATA+AGG | + | chr4_4:51208544-51208563 | None:intergenic | 25.0% |
| ! | CTCTCTAAATATATATATCC+AGG | + | chr4_4:51208632-51208651 | None:intergenic | 25.0% |
| ! | GATACACATAATTAAAGAGT+TGG | + | chr4_4:51208726-51208745 | None:intergenic | 25.0% |
| !!! | TCATAAAGACAGTTTTATTC+GGG | - | chr4_4:51208744-51208763 | Msa0686660:intron | 25.0% |
| ! | TAAGTCTTAAGCTACTATTT+CGG | + | chr4_4:51208843-51208862 | None:intergenic | 25.0% |
| !! | CTGAATCTTTTAACATTTCT+AGG | - | chr4_4:51208888-51208907 | Msa0686660:intron | 25.0% |
| ! | CAAACAAATCACAACAAAAT+TGG | + | chr4_4:51208957-51208976 | None:intergenic | 25.0% |
| !!! | TTTGTTGTGATTTGTTTGTA+TGG | - | chr4_4:51208959-51208978 | Msa0686660:intron | 25.0% |
| !!! | ATAAAAAGCATCATAAAGTC+AGG | + | chr4_4:51209061-51209080 | None:intergenic | 25.0% |
| !!! | TTATGATGCTTTTTATTAGG+TGG | - | chr4_4:51209065-51209084 | Msa0686660:intron | 25.0% |
| !! | CAAAATCTGAAATTCATTTC+AGG | + | chr4_4:51209489-51209508 | None:intergenic | 25.0% |
| ! | GAAAGAAAAGAAAGAAAAGA+AGG | - | chr4_4:51210378-51210397 | Msa0686660:intron | 25.0% |
| ! | AAAGAAGAAAAAGGAGAAAA+AGG | - | chr4_4:51210411-51210430 | Msa0686660:intron | 25.0% |
| ! | AGAAAAGAAGAAGAAAAAGA+AGG | - | chr4_4:51210486-51210505 | Msa0686660:intron | 25.0% |
| ! | TATGTATCAGCTAATCAATA+TGG | - | chr4_4:51210670-51210689 | Msa0686660:intron | 25.0% |
| !!! | TAACCATTTTTGTATACTTC+TGG | - | chr4_4:51210700-51210719 | Msa0686660:intron | 25.0% |
| ! | TTCATGTTAATGCAATTTGT+AGG | - | chr4_4:51210759-51210778 | Msa0686660:intron | 25.0% |
| ! | TTATGTTTGTGAATGGAAAT+AGG | - | chr4_4:51210868-51210887 | Msa0686660:five_prime_UTR | 25.0% |
| ! | ACTAAATAGAACAAAGCATA+TGG | + | chr4_4:51210899-51210918 | None:intergenic | 25.0% |
| TTAAACCCTAAATTAGGGTT+TGG | + | chr4_4:51206265-51206284 | None:intergenic | 30.0% | |
| GAAGCTTAAACCCTAAATTA+GGG | + | chr4_4:51206270-51206289 | None:intergenic | 30.0% | |
| TGAAGCTTAAACCCTAAATT+AGG | + | chr4_4:51206271-51206290 | None:intergenic | 30.0% | |
| TCAGGTACAAATTCGAATTT+GGG | + | chr4_4:51206305-51206324 | None:intergenic | 30.0% | |
| ATCAGGTACAAATTCGAATT+TGG | + | chr4_4:51206306-51206325 | None:intergenic | 30.0% | |
| !! | ATTTTCAAAGTGCTTGATGA+AGG | - | chr4_4:51206960-51206979 | Msa0686660:intron | 30.0% |
| TTCTCTCAGCAATATGATAA+TGG | - | chr4_4:51207509-51207528 | Msa0686660:CDS | 30.0% | |
| CATTGTGAAAATGAAACGTT+AGG | - | chr4_4:51207738-51207757 | Msa0686660:intron | 30.0% | |
| TGTTCATAACAATGCTGTTA+TGG | - | chr4_4:51207900-51207919 | Msa0686660:intron | 30.0% | |
| GTGACTTCAATATATTGATC+AGG | + | chr4_4:51208129-51208148 | None:intergenic | 30.0% | |
| AAAGAAGTTAGGCACAAATA+TGG | - | chr4_4:51208196-51208215 | Msa0686660:intron | 30.0% | |
| TAATTGTGAGAGAACAAACA+GGG | - | chr4_4:51208395-51208414 | Msa0686660:intron | 30.0% | |
| ! | TATATTTTTCACCGAACAGT+TGG | - | chr4_4:51208461-51208480 | Msa0686660:intron | 30.0% |
| !!! | TCAAAACCTTCTGGTTTTAA+TGG | + | chr4_4:51208519-51208538 | None:intergenic | 30.0% |
| TATTTCGGTTACCATTTACT+CGG | + | chr4_4:51208828-51208847 | None:intergenic | 30.0% | |
| CTTACAATTCAATGTTCTTG+AGG | - | chr4_4:51208859-51208878 | Msa0686660:intron | 30.0% | |
| TTTCTAGGCAAATATGCATA+TGG | - | chr4_4:51208903-51208922 | Msa0686660:intron | 30.0% | |
| !! | AAAAAGTATTTACCAGCTAG+CGG | + | chr4_4:51209026-51209045 | None:intergenic | 30.0% |
| !! | ACTATGATTTTGGTAAGTTC+TGG | + | chr4_4:51209189-51209208 | None:intergenic | 30.0% |
| ! | GATGTTGTCAACTATGATTT+TGG | + | chr4_4:51209199-51209218 | None:intergenic | 30.0% |
| ! | TGAATTTCAGATTTTGTCAG+AGG | - | chr4_4:51209493-51209512 | Msa0686660:CDS | 30.0% |
| ATATCAATGGGAACTGAAAT+TGG | - | chr4_4:51209548-51209567 | Msa0686660:CDS | 30.0% | |
| TCTATGATTATCTCAAGAGT+AGG | - | chr4_4:51209642-51209661 | Msa0686660:intron | 30.0% | |
| ATTTATTAAGCTTCCTCCAT+GGG | + | chr4_4:51209732-51209751 | None:intergenic | 30.0% | |
| TATGACAAGGATAGAAAGAA+AGG | - | chr4_4:51210158-51210177 | Msa0686660:intron | 30.0% | |
| GGTATATTAGTAGCTTCATT+TGG | - | chr4_4:51210208-51210227 | Msa0686660:intron | 30.0% | |
| ! | CTTTGGTTCAATAACTGAAT+CGG | + | chr4_4:51210305-51210324 | None:intergenic | 30.0% |
| ! | TCTTTCTTTTTGTCAGTAAC+AGG | + | chr4_4:51210364-51210383 | None:intergenic | 30.0% |
| AAAGAAGGAATCTACTGAAA+AGG | - | chr4_4:51210501-51210520 | Msa0686660:intron | 30.0% | |
| TACATATATTTCGCTCTAGT+CGG | + | chr4_4:51210656-51210675 | None:intergenic | 30.0% | |
| ATATATTATCCACTGAAGTC+AGG | + | chr4_4:51210827-51210846 | None:intergenic | 30.0% | |
| TGACTTCAGTGGATAATATA+TGG | - | chr4_4:51210826-51210845 | Msa0686660:intron | 30.0% | |
| !!! | CAGTCATTTTTTTGCAAAAG+TGG | + | chr4_4:51210935-51210954 | None:intergenic | 30.0% |
| ! | CACTTTTGCAAAAAAATGAC+TGG | - | chr4_4:51210933-51210952 | Msa0686660:five_prime_UTR | 30.0% |
| TCTTCACCAAACCCTAATTT+AGG | - | chr4_4:51206256-51206275 | Msa0686660:three_prime_UTR | 35.0% | |
| CTTCACCAAACCCTAATTTA+GGG | - | chr4_4:51206257-51206276 | Msa0686660:three_prime_UTR | 35.0% | |
| CAGGTACAAATTCGAATTTG+GGG | + | chr4_4:51206304-51206323 | None:intergenic | 35.0% | |
| !! | TTAAGTTGAGAAGAGTGTTG+CGG | + | chr4_4:51206346-51206365 | None:intergenic | 35.0% |
| TCTGTGCGGAAGAAAATTAT+TGG | - | chr4_4:51206622-51206641 | Msa0686660:CDS | 35.0% | |
| !!! | TTGGCAAAGTCAACGTTTTT+TGG | - | chr4_4:51206760-51206779 | Msa0686660:CDS | 35.0% |
| !!! | TTTTGGTGTTTGCTTGTAAC+TGG | - | chr4_4:51206777-51206796 | Msa0686660:CDS | 35.0% |
| !! | TTTGGTGTTTGCTTGTAACT+GGG | - | chr4_4:51206778-51206797 | Msa0686660:CDS | 35.0% |
| ! | CACTTTGAAAATAGCAAACC+CGG | + | chr4_4:51206952-51206971 | None:intergenic | 35.0% |
| !! | AGGAAAGCTTTCTAAAGTTG+AGG | - | chr4_4:51206980-51206999 | Msa0686660:intron | 35.0% |
| CTTAGTGGTATTAAACACAG+TGG | + | chr4_4:51207193-51207212 | None:intergenic | 35.0% | |
| CACTGTGTTTAATACCACTA+AGG | - | chr4_4:51207191-51207210 | Msa0686660:intron | 35.0% | |
| ATGTATAGGAGTTCTCAATC+CGG | - | chr4_4:51207294-51207313 | Msa0686660:CDS | 35.0% | |
| ACATGAAATTGAGAGGATGA+GGG | + | chr4_4:51207485-51207504 | None:intergenic | 35.0% | |
| AACATGAAATTGAGAGGATG+AGG | + | chr4_4:51207486-51207505 | None:intergenic | 35.0% | |
| GAAGCAAACATGAAATTGAG+AGG | + | chr4_4:51207492-51207511 | None:intergenic | 35.0% | |
| CAATTGAATGAACTCATAGC+AGG | - | chr4_4:51207946-51207965 | Msa0686660:CDS | 35.0% | |
| ATGACTAGCAAAGCAGAATA+TGG | + | chr4_4:51208175-51208194 | None:intergenic | 35.0% | |
| TGCTAGTCATCAAAGAAGTT+AGG | - | chr4_4:51208185-51208204 | Msa0686660:intron | 35.0% | |
| GTAATTGTGAGAGAACAAAC+AGG | - | chr4_4:51208394-51208413 | Msa0686660:intron | 35.0% | |
| AATTGTGAGAGAACAAACAG+GGG | - | chr4_4:51208396-51208415 | Msa0686660:intron | 35.0% | |
| AAAGTGAAATAATGCAGCGA+GGG | - | chr4_4:51208548-51208567 | Msa0686660:intron | 35.0% | |
| GACCTTAACTAACGTTCTAA+TGG | - | chr4_4:51208766-51208785 | Msa0686660:intron | 35.0% | |
| CACCATTAGAACGTTAGTTA+AGG | + | chr4_4:51208771-51208790 | None:intergenic | 35.0% | |
| CTTAACTAACGTTCTAATGG+TGG | - | chr4_4:51208769-51208788 | Msa0686660:intron | 35.0% | |
| ATTTCGGTTACCATTTACTC+GGG | + | chr4_4:51208827-51208846 | None:intergenic | 35.0% | |
| !! | GTTGTGATTTGTTTGTATGG+TGG | - | chr4_4:51208962-51208981 | Msa0686660:intron | 35.0% |
| TTGACAACATCCAATATGCA+AGG | - | chr4_4:51209208-51209227 | Msa0686660:CDS | 35.0% | |
| TGAAAATCGTAACTCTACCT+CGG | + | chr4_4:51209283-51209302 | None:intergenic | 35.0% | |
| TGAGTAAATTAATTGGCAGC+AGG | + | chr4_4:51209310-51209329 | None:intergenic | 35.0% | |
| ! | ATTTCAGATTTTGTCAGAGG+AGG | - | chr4_4:51209496-51209515 | Msa0686660:CDS | 35.0% |
| GAAGCTTCAGTGATATCAAT+GGG | - | chr4_4:51209536-51209555 | Msa0686660:CDS | 35.0% | |
| GATTTATTAAGCTTCCTCCA+TGG | + | chr4_4:51209733-51209752 | None:intergenic | 35.0% | |
| !! | TGCTCTAAAAAGAGCTTTCT+CGG | + | chr4_4:51209795-51209814 | None:intergenic | 35.0% |
| TGGTAAATGAGACCATACTT+TGG | + | chr4_4:51209839-51209858 | None:intergenic | 35.0% | |
| ATTTACCATGCATCCTTGAT+TGG | - | chr4_4:51209851-51209870 | Msa0686660:intron | 35.0% | |
| ! | GAAATTTTCCCCTTGAACTT+TGG | + | chr4_4:51209887-51209906 | None:intergenic | 35.0% |
| AGTTCAAGGGGAAAATTTCT+CGG | - | chr4_4:51209888-51209907 | Msa0686660:intron | 35.0% | |
| TTGTCATATGCTTCGATCTT+GGG | + | chr4_4:51210146-51210165 | None:intergenic | 35.0% | |
| AGCTACTAATATACCTTAGC+TGG | + | chr4_4:51210203-51210222 | None:intergenic | 35.0% | |
| ACCAAAGTCTAATTCTGCAA+TGG | - | chr4_4:51210318-51210337 | Msa0686660:intron | 35.0% | |
| TCCATTGCAGAATTAGACTT+TGG | + | chr4_4:51210322-51210341 | None:intergenic | 35.0% | |
| ! | TTCTTTTTGTCAGTAACAGG+AGG | + | chr4_4:51210361-51210380 | None:intergenic | 35.0% |
| GAAAAAGGAGAAAAAGGAAG+AGG | - | chr4_4:51210417-51210436 | Msa0686660:intron | 35.0% | |
| TTCTTAACAACTTCCTCTTC+CGG | + | chr4_4:51210466-51210485 | None:intergenic | 35.0% | |
| GAGGAGAAAAGAAGAAAAAG+AGG | - | chr4_4:51210557-51210576 | Msa0686660:intron | 35.0% | |
| ! | TTATCTTTCTTTTTGCTCGG+CGG | + | chr4_4:51210619-51210638 | None:intergenic | 35.0% |
| ! | GCTCCAGAAGTATACAAAAA+TGG | + | chr4_4:51210706-51210725 | None:intergenic | 35.0% |
| !! | TTTGTTTTTCCTGACTTCAG+TGG | - | chr4_4:51210815-51210834 | Msa0686660:intron | 35.0% |
| TTAGGGTTTAAGCTTCACCA+CGG | - | chr4_4:51206274-51206293 | Msa0686660:three_prime_UTR | 40.0% | |
| GCAACACTCTTCTCAACTTA+AGG | - | chr4_4:51206345-51206364 | Msa0686660:three_prime_UTR | 40.0% | |
| CAGCGCAAGAGATAGTAAAT+AGG | + | chr4_4:51206408-51206427 | None:intergenic | 40.0% | |
| !! | TCTTCTGAGATGTTTCTGTG+CGG | - | chr4_4:51206608-51206627 | Msa0686660:CDS | 40.0% |
| ATTATTGGAGACCTGAACTG+AGG | - | chr4_4:51206637-51206656 | Msa0686660:CDS | 40.0% | |
| ! | TTCCCATTGTGTCTGTTTTC+TGG | - | chr4_4:51206734-51206753 | Msa0686660:CDS | 40.0% |
| ! | TCCCATTGTGTCTGTTTTCT+GGG | - | chr4_4:51206735-51206754 | Msa0686660:CDS | 40.0% |
| ACCCAGAAAACAGACACAAT+GGG | + | chr4_4:51206739-51206758 | None:intergenic | 40.0% | |
| ! | GCTTCTACTGTTTGAAACAC+CGG | - | chr4_4:51206926-51206945 | Msa0686660:intron | 40.0% |
| TAGATTCTGCACTTCCTTAG+TGG | + | chr4_4:51207208-51207227 | None:intergenic | 40.0% | |
| ! | GCAGCTACTTTGCTAATTGA+TGG | - | chr4_4:51207678-51207697 | Msa0686660:CDS | 40.0% |
| ! | AATTGATGGCAAAGCTAGCA+AGG | - | chr4_4:51207692-51207711 | Msa0686660:CDS | 40.0% |
| ! | ATTGATGGCAAAGCTAGCAA+GGG | - | chr4_4:51207693-51207712 | Msa0686660:CDS | 40.0% |
| GCTAAACTTCAGCTTGTATC+TGG | + | chr4_4:51208025-51208044 | None:intergenic | 40.0% | |
| AGGAGACCATTAAAACCAGA+AGG | - | chr4_4:51208510-51208529 | Msa0686660:intron | 40.0% | |
| ! | GATAAGGCATCAAAACCTTC+TGG | + | chr4_4:51208528-51208547 | None:intergenic | 40.0% |
| CAAAGTGAAATAATGCAGCG+AGG | - | chr4_4:51208547-51208566 | Msa0686660:intron | 40.0% | |
| AGTCTTCTTTGTATCACAGC+TGG | + | chr4_4:51208683-51208702 | None:intergenic | 40.0% | |
| AAGAGTTGGACCTAACACTA+CGG | + | chr4_4:51208712-51208731 | None:intergenic | 40.0% | |
| CTAACGTTCTAATGGTGGTA+AGG | - | chr4_4:51208774-51208793 | Msa0686660:intron | 40.0% | |
| TTCTAATGTGCCCGAGTAAA+TGG | - | chr4_4:51208814-51208833 | Msa0686660:intron | 40.0% | |
| !!! | TTTTTTCTTCTTCCGCTAGC+TGG | - | chr4_4:51209011-51209030 | Msa0686660:intron | 40.0% |
| ACTATGATCGTTCAGGCTAT+TGG | - | chr4_4:51209090-51209109 | Msa0686660:intron | 40.0% | |
| ACTTGACAGACCTTGCATAT+TGG | + | chr4_4:51209221-51209240 | None:intergenic | 40.0% | |
| GGAAGCTTCAGTGATATCAA+TGG | - | chr4_4:51209535-51209554 | Msa0686660:CDS | 40.0% | |
| TATTAGAGAGCTCTGTGATC+AGG | - | chr4_4:51209589-51209608 | Msa0686660:intron | 40.0% | |
| CCAACCATAGCAGTCAAATT+GGG | + | chr4_4:51209683-51209702 | None:intergenic | 40.0% | |
| CCAATTTGACTGCTATGGTT+GGG | - | chr4_4:51209681-51209700 | Msa0686660:intron | 40.0% | |
| CAATTTGACTGCTATGGTTG+GGG | - | chr4_4:51209682-51209701 | Msa0686660:intron | 40.0% | |
| ATAAATCTTGCAAAGCAGCC+TGG | - | chr4_4:51209746-51209765 | Msa0686660:intron | 40.0% | |
| AAGCATGCTACTCCAAAGTA+TGG | - | chr4_4:51209824-51209843 | Msa0686660:intron | 40.0% | |
| AACCTTGAAGGCAAAGAACT+AGG | - | chr4_4:51210092-51210111 | Msa0686660:intron | 40.0% | |
| CTTGTCATATGCTTCGATCT+TGG | + | chr4_4:51210147-51210166 | None:intergenic | 40.0% | |
| CAAGATCGAAGCATATGACA+AGG | - | chr4_4:51210145-51210164 | Msa0686660:intron | 40.0% | |
| AAGGATAGAAAGAAAGGAGC+CGG | - | chr4_4:51210164-51210183 | Msa0686660:intron | 40.0% | |
| AAAGGAGAAAAAGGAAGAGG+TGG | - | chr4_4:51210420-51210439 | Msa0686660:intron | 40.0% | |
| TGAAGATGTTGTTGAGGAAC+CGG | - | chr4_4:51210444-51210463 | Msa0686660:intron | 40.0% | |
| AATGGAGACCATACTTCGAA+TGG | - | chr4_4:51210535-51210554 | Msa0686660:intron | 40.0% | |
| TTTCTCCTCCATTCGAAGTA+TGG | + | chr4_4:51210546-51210565 | None:intergenic | 40.0% | |
| GAAGAAAAAGAGGAAGAAGC+AGG | - | chr4_4:51210567-51210586 | Msa0686660:intron | 40.0% | |
| CAGCTAATCAATATGGTGAC+TGG | - | chr4_4:51210677-51210696 | Msa0686660:intron | 40.0% | |
| ! | TGCAAAAGTGGATCTGAGAT+GGG | + | chr4_4:51210923-51210942 | None:intergenic | 40.0% |
| TTGCAAAAGTGGATCTGAGA+TGG | + | chr4_4:51210924-51210943 | None:intergenic | 40.0% | |
| TTCGAATTTGGGGATTTCCG+TGG | + | chr4_4:51206294-51206313 | None:intergenic | 45.0% | |
| CGTGAAAAGGTGGTTGAATC+AGG | + | chr4_4:51206323-51206342 | None:intergenic | 45.0% | |
| TGAAAGAGTCTCCTCAGTTC+AGG | + | chr4_4:51206651-51206670 | None:intergenic | 45.0% | |
| CACCCAGAAAACAGACACAA+TGG | + | chr4_4:51206740-51206759 | None:intergenic | 45.0% | |
| ! | TGTGTCTGTTTTCTGGGTGT+TGG | - | chr4_4:51206741-51206760 | Msa0686660:CDS | 45.0% |
| TTGAAAATAGCAAACCCGGC+CGG | + | chr4_4:51206948-51206967 | None:intergenic | 45.0% | |
| GACAGTACATAACGCTTCAC+CGG | + | chr4_4:51207316-51207335 | None:intergenic | 45.0% | |
| ! | AATTGAGAGGATGAGGGTGT+GGG | + | chr4_4:51207479-51207498 | None:intergenic | 45.0% |
| AAATTGAGAGGATGAGGGTG+TGG | + | chr4_4:51207480-51207499 | None:intergenic | 45.0% | |
| ! | GAATACTTCCGAAGCTCTAG+AGG | - | chr4_4:51207656-51207675 | Msa0686660:CDS | 45.0% |
| ! | GTGTTGCTGAGTCAAAGCTT+GGG | - | chr4_4:51207760-51207779 | Msa0686660:intron | 45.0% |
| !! | GCTGTTATGGAGTTGATGAG+AGG | - | chr4_4:51207913-51207932 | Msa0686660:intron | 45.0% |
| AGGTCTAGCTGTTCAAGACA+TGG | - | chr4_4:51207966-51207985 | Msa0686660:CDS | 45.0% | |
| AGACAAACCCAAGCTCATAG+GGG | + | chr4_4:51207992-51208011 | None:intergenic | 45.0% | |
| GAGACAAACCCAAGCTCATA+GGG | + | chr4_4:51207993-51208012 | None:intergenic | 45.0% | |
| TGAGACAAACCCAAGCTCAT+AGG | + | chr4_4:51207994-51208013 | None:intergenic | 45.0% | |
| AATCAATACCAGAGCTCCAC+CGG | + | chr4_4:51208422-51208441 | None:intergenic | 45.0% | |
| TTTCACCGAACAGTTGGTTG+TGG | - | chr4_4:51208467-51208486 | Msa0686660:intron | 45.0% | |
| GAAATAATGCAGCGAGGGAT+AGG | - | chr4_4:51208553-51208572 | Msa0686660:intron | 45.0% | |
| GACTATATCCCCGTAGTGTT+AGG | - | chr4_4:51208699-51208718 | Msa0686660:intron | 45.0% | |
| AGAGTTGGACCTAACACTAC+GGG | + | chr4_4:51208711-51208730 | None:intergenic | 45.0% | |
| GGTGGATACTATGATCGTTC+AGG | - | chr4_4:51209083-51209102 | Msa0686660:intron | 45.0% | |
| ATACCATTCACGAACCCTCA+TGG | + | chr4_4:51209154-51209173 | None:intergenic | 45.0% | |
| ATGAGGGTTCGTGAATGGTA+TGG | - | chr4_4:51209153-51209172 | Msa0686660:intron | 45.0% | |
| !! | TGCAAGGTCTGTCAAGTTGA+TGG | - | chr4_4:51209224-51209243 | Msa0686660:CDS | 45.0% |
| !! | GCAAGGTCTGTCAAGTTGAT+GGG | - | chr4_4:51209225-51209244 | Msa0686660:CDS | 45.0% |
| TGCAAAGCTTGATTTCTCCG+AGG | - | chr4_4:51209263-51209282 | Msa0686660:CDS | 45.0% | |
| ! | GATTTTGTCAGAGGAGGTTG+AGG | - | chr4_4:51209502-51209521 | Msa0686660:CDS | 45.0% |
| AGCAGTCAAATTGGGTGCAA+TGG | + | chr4_4:51209675-51209694 | None:intergenic | 45.0% | |
| TGCACCCAATTTGACTGCTA+TGG | - | chr4_4:51209676-51209695 | Msa0686660:intron | 45.0% | |
| CCCAATTTGACTGCTATGGT+TGG | - | chr4_4:51209680-51209699 | Msa0686660:intron | 45.0% | |
| CCCAACCATAGCAGTCAAAT+TGG | + | chr4_4:51209684-51209703 | None:intergenic | 45.0% | |
| ! | TTTCCCCTTGAACTTTGGAG+CGG | + | chr4_4:51209882-51209901 | None:intergenic | 45.0% |
| ! | ACTTGCTGCAAAGACTGCTT+TGG | - | chr4_4:51209913-51209932 | Msa0686660:intron | 45.0% |
| CAAAGACTGCTTTGGCTATC+AGG | - | chr4_4:51209921-51209940 | Msa0686660:intron | 45.0% | |
| GCAAGATAACACCATGGGAT+TGG | - | chr4_4:51209964-51209983 | Msa0686660:intron | 45.0% | |
| ! | AGCTCTGTTTTCCAATCCCA+TGG | + | chr4_4:51209978-51209997 | None:intergenic | 45.0% |
| GGGATTGGAAAACAGAGCTA+AGG | - | chr4_4:51209979-51209998 | Msa0686660:intron | 45.0% | |
| AGGACTGATAACTCCAGCTA+AGG | - | chr4_4:51210187-51210206 | Msa0686660:intron | 45.0% | |
| GGTGGTTGAAGATGTTGTTG+AGG | - | chr4_4:51210438-51210457 | Msa0686660:intron | 45.0% | |
| GGAATCTACTGAAAAGGCAG+AGG | - | chr4_4:51210507-51210526 | Msa0686660:intron | 45.0% | |
| ! | GCAAAAGTGGATCTGAGATG+GGG | + | chr4_4:51210922-51210941 | None:intergenic | 45.0% |
| !! | AAGAGTGTTGCGGCGTGAAA+AGG | + | chr4_4:51206336-51206355 | None:intergenic | 50.0% |
| ! | CTACTGTTTGAAACACCGGC+CGG | - | chr4_4:51206930-51206949 | Msa0686660:intron | 50.0% |
| ! | TACTGTTTGAAACACCGGCC+GGG | - | chr4_4:51206931-51206950 | Msa0686660:intron | 50.0% |
| ! | CTTTCTAGCAGCATCTGCAG+TGG | + | chr4_4:51207438-51207457 | None:intergenic | 50.0% |
| CACTGCAGATGCTGCTAGAA+AGG | - | chr4_4:51207436-51207455 | Msa0686660:CDS | 50.0% | |
| !! | AGTAGCTGCCTCTAGAGCTT+CGG | + | chr4_4:51207667-51207686 | None:intergenic | 50.0% |
| !! | GGTGTTGCTGAGTCAAAGCT+TGG | - | chr4_4:51207759-51207778 | Msa0686660:intron | 50.0% |
| !! | GCTGAAGTTTAGCGCTGACA+AGG | - | chr4_4:51208032-51208051 | Msa0686660:CDS | 50.0% |
| AGCGAGGGATAGGAGAATAG+AGG | - | chr4_4:51208563-51208582 | Msa0686660:intron | 50.0% | |
| GCGAGGGATAGGAGAATAGA+GGG | - | chr4_4:51208564-51208583 | Msa0686660:intron | 50.0% | |
| GAGTTGGACCTAACACTACG+GGG | + | chr4_4:51208710-51208729 | None:intergenic | 50.0% | |
| AGCTGAACACGTATGCCATG+AGG | - | chr4_4:51209136-51209155 | Msa0686660:intron | 50.0% | |
| GCTGAACACGTATGCCATGA+GGG | - | chr4_4:51209137-51209156 | Msa0686660:intron | 50.0% | |
| ATGCCATGAGGGTTCGTGAA+TGG | - | chr4_4:51209148-51209167 | Msa0686660:intron | 50.0% | |
| GGGTTCGTGAATGGTATGGT+TGG | - | chr4_4:51209157-51209176 | Msa0686660:intron | 50.0% | |
| AGAATCTGCACGGTACTACC+AGG | + | chr4_4:51209767-51209786 | None:intergenic | 50.0% | |
| GGTAGTACCGTGCAGATTCT+TGG | - | chr4_4:51209767-51209786 | Msa0686660:CDS | 50.0% | |
| CCTGACCAATCAAGGATGCA+TGG | + | chr4_4:51209859-51209878 | None:intergenic | 50.0% | |
| ! | CCATGCATCCTTGATTGGTC+AGG | - | chr4_4:51209856-51209875 | Msa0686660:intron | 50.0% |
| GCTATCAGGTGTGATGCACT+GGG | - | chr4_4:51209935-51209954 | Msa0686660:intron | 50.0% | |
| ! | TGACGGGCAAGATAACACCA+TGG | - | chr4_4:51209958-51209977 | Msa0686660:intron | 50.0% |
| GACGGGCAAGATAACACCAT+GGG | - | chr4_4:51209959-51209978 | Msa0686660:intron | 50.0% | |
| TGCAGCTTGAAGCACGTTTG+AGG | - | chr4_4:51210069-51210088 | Msa0686660:intron | 50.0% | |
| GCACGTTTGAGGAACCTTGA+AGG | - | chr4_4:51210080-51210099 | Msa0686660:intron | 50.0% | |
| ! | GGCCTAGTTCTTTGCCTTCA+AGG | + | chr4_4:51210097-51210116 | None:intergenic | 50.0% |
| ! | AAAGAACTAGGCCGCTTTGC+CGG | - | chr4_4:51210104-51210123 | Msa0686660:intron | 50.0% |
| CTTTAGCAGAACCGGCAAAG+CGG | + | chr4_4:51210118-51210137 | None:intergenic | 50.0% | |
| !! | GCTTTGCCGGTTCTGCTAAA+GGG | - | chr4_4:51210117-51210136 | Msa0686660:intron | 50.0% |
| GATAGAAAGAAAGGAGCCGG+AGG | - | chr4_4:51210167-51210186 | Msa0686660:intron | 50.0% | |
| AGCTGGAGTTATCAGTCCTC+CGG | + | chr4_4:51210186-51210205 | None:intergenic | 50.0% | |
| TTGTCAGTAACAGGAGGCTC+TGG | + | chr4_4:51210355-51210374 | None:intergenic | 50.0% | |
| TGTTGTTGAGGAACCGGAAG+AGG | - | chr4_4:51210450-51210469 | Msa0686660:intron | 50.0% | |
| ! | GAAAAGGCAGAGGTGCAGAA+TGG | - | chr4_4:51210517-51210536 | Msa0686660:intron | 50.0% |
| GGAGACCATACTTCGAATGG+AGG | - | chr4_4:51210538-51210557 | Msa0686660:intron | 50.0% | |
| AAAGAGGAAGAAGCAGGCAG+AGG | - | chr4_4:51210573-51210592 | Msa0686660:intron | 50.0% | |
| AGTGTTGCGGCGTGAAAAGG+TGG | + | chr4_4:51206333-51206352 | None:intergenic | 55.0% | |
| AGACATGGCCCCTATGAGCT+TGG | - | chr4_4:51207981-51208000 | Msa0686660:CDS | 55.0% | |
| GACATGGCCCCTATGAGCTT+GGG | - | chr4_4:51207982-51208001 | Msa0686660:CDS | 55.0% | |
| GTGAGAGAACAAACAGGGGC+CGG | - | chr4_4:51208400-51208419 | Msa0686660:intron | 55.0% | |
| CACCGAACAGTTGGTTGTGG+CGG | - | chr4_4:51208470-51208489 | Msa0686660:intron | 55.0% | |
| CACCGCCACAACCAACTGTT+CGG | + | chr4_4:51208475-51208494 | None:intergenic | 55.0% | |
| ! | CGGTGCAGGAGTATGAGTGT+AGG | - | chr4_4:51208490-51208509 | Msa0686660:intron | 55.0% |
| CGGGCACATTAGAAAGCAGC+TGG | + | chr4_4:51208808-51208827 | None:intergenic | 55.0% | |
| GCTATGGTTGGGGAGCTTGT+TGG | - | chr4_4:51209692-51209711 | Msa0686660:intron | 55.0% | |
| AGCTTCCTCCATGGGCAATG+AGG | + | chr4_4:51209724-51209743 | None:intergenic | 55.0% | |
| CTCGGCACCAAGAATCTGCA+CGG | + | chr4_4:51209777-51209796 | None:intergenic | 55.0% | |
| TCAGGCCGCTCCAAAGTTCA+AGG | - | chr4_4:51209874-51209893 | Msa0686660:intron | 55.0% | |
| CAGGCCGCTCCAAAGTTCAA+GGG | - | chr4_4:51209875-51209894 | Msa0686660:intron | 55.0% | |
| AGGCCGCTCCAAAGTTCAAG+GGG | - | chr4_4:51209876-51209895 | Msa0686660:intron | 55.0% | |
| GGCTATCAGGTGTGATGCAC+TGG | - | chr4_4:51209934-51209953 | Msa0686660:intron | 55.0% | |
| AGGTGTGATGCACTGGGTGA+CGG | - | chr4_4:51209941-51209960 | Msa0686660:intron | 55.0% | |
| !! | CGCTTTGCCGGTTCTGCTAA+AGG | - | chr4_4:51210116-51210135 | Msa0686660:intron | 55.0% |
| GGGCTTCCCTTTAGCAGAAC+CGG | + | chr4_4:51210126-51210145 | None:intergenic | 55.0% | |
| AGAGAACAAACAGGGGCCGG+TGG | - | chr4_4:51208403-51208422 | Msa0686660:intron | 60.0% | |
| ACAGTTGGTTGTGGCGGTGC+AGG | - | chr4_4:51208476-51208495 | Msa0686660:intron | 60.0% | |
| GTCAGAGGAGGTTGAGGCAG+AGG | - | chr4_4:51209508-51209527 | Msa0686660:CDS | 60.0% | |
| GGAGGTTGAGGCAGAGGTGA+AGG | - | chr4_4:51209514-51209533 | Msa0686660:CDS | 60.0% | |
| TGGAGCGGCCTGACCAATCA+AGG | + | chr4_4:51209867-51209886 | None:intergenic | 60.0% | |
| GGTGTGATGCACTGGGTGAC+GGG | - | chr4_4:51209942-51209961 | Msa0686660:intron | 60.0% | |
| GAGGAAGAAGCAGGCAGAGG+AGG | - | chr4_4:51210576-51210595 | Msa0686660:intron | 60.0% | |
| GGTGCTCGCCTCATTGCCCA+TGG | - | chr4_4:51209713-51209732 | Msa0686660:intron | 65.0% | |
| GCTCGCCTCATTGCCCATGG+AGG | - | chr4_4:51209716-51209735 | Msa0686660:intron | 65.0% | |
| AACAGGGGCCGGTGGAGCTC+TGG | - | chr4_4:51208411-51208430 | Msa0686660:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 51206239 | 51210977 | 51206239 | ID=Msa0686660;Name=Msa0686660 |
| chr4_4 | mRNA | 51206239 | 51210977 | 51206239 | ID=Msa0686660-mRNA-1;Parent=Msa0686660;Name=Msa0686660-mRNA-1;_AED=0.36;_eAED=0.36;_QI=151|1|1|1|0.77|0.6|10|297|557 |
| chr4_4 | exon | 51206239 | 51206501 | 51206239 | ID=Msa0686660-mRNA-1:exon:13234;Parent=Msa0686660-mRNA-1 |
| chr4_4 | exon | 51206522 | 51206930 | 51206522 | ID=Msa0686660-mRNA-1:exon:13233;Parent=Msa0686660-mRNA-1 |
| chr4_4 | exon | 51207008 | 51207142 | 51207008 | ID=Msa0686660-mRNA-1:exon:13232;Parent=Msa0686660-mRNA-1 |
| chr4_4 | exon | 51207216 | 51207713 | 51207216 | ID=Msa0686660-mRNA-1:exon:13231;Parent=Msa0686660-mRNA-1 |
| chr4_4 | exon | 51207932 | 51208132 | 51207932 | ID=Msa0686660-mRNA-1:exon:13230;Parent=Msa0686660-mRNA-1 |
| chr4_4 | exon | 51209163 | 51209327 | 51209163 | ID=Msa0686660-mRNA-1:exon:13229;Parent=Msa0686660-mRNA-1 |
| chr4_4 | exon | 51209413 | 51209592 | 51209413 | ID=Msa0686660-mRNA-1:exon:13228;Parent=Msa0686660-mRNA-1 |
| chr4_4 | exon | 51209759 | 51209800 | 51209759 | ID=Msa0686660-mRNA-1:exon:13227;Parent=Msa0686660-mRNA-1 |
| chr4_4 | exon | 51210215 | 51210315 | 51210215 | ID=Msa0686660-mRNA-1:exon:13226;Parent=Msa0686660-mRNA-1 |
| chr4_4 | exon | 51210850 | 51210977 | 51210850 | ID=Msa0686660-mRNA-1:exon:13225;Parent=Msa0686660-mRNA-1 |
| chr4_4 | five_prime_UTR | 51210850 | 51210977 | 51210850 | ID=Msa0686660-mRNA-1:five_prime_utr;Parent=Msa0686660-mRNA-1 |
| chr4_4 | five_prime_UTR | 51210293 | 51210315 | 51210293 | ID=Msa0686660-mRNA-1:five_prime_utr;Parent=Msa0686660-mRNA-1 |
| chr4_4 | CDS | 51210215 | 51210292 | 51210215 | ID=Msa0686660-mRNA-1:cds;Parent=Msa0686660-mRNA-1 |
| chr4_4 | CDS | 51209759 | 51209800 | 51209759 | ID=Msa0686660-mRNA-1:cds;Parent=Msa0686660-mRNA-1 |
| chr4_4 | CDS | 51209413 | 51209592 | 51209413 | ID=Msa0686660-mRNA-1:cds;Parent=Msa0686660-mRNA-1 |
| chr4_4 | CDS | 51209163 | 51209327 | 51209163 | ID=Msa0686660-mRNA-1:cds;Parent=Msa0686660-mRNA-1 |
| chr4_4 | CDS | 51207932 | 51208132 | 51207932 | ID=Msa0686660-mRNA-1:cds;Parent=Msa0686660-mRNA-1 |
| chr4_4 | CDS | 51207216 | 51207713 | 51207216 | ID=Msa0686660-mRNA-1:cds;Parent=Msa0686660-mRNA-1 |
| chr4_4 | CDS | 51207008 | 51207142 | 51207008 | ID=Msa0686660-mRNA-1:cds;Parent=Msa0686660-mRNA-1 |
| chr4_4 | CDS | 51206556 | 51206930 | 51206556 | ID=Msa0686660-mRNA-1:cds;Parent=Msa0686660-mRNA-1 |
| chr4_4 | three_prime_UTR | 51206522 | 51206555 | 51206522 | ID=Msa0686660-mRNA-1:three_prime_utr;Parent=Msa0686660-mRNA-1 |
| chr4_4 | three_prime_UTR | 51206239 | 51206501 | 51206239 | ID=Msa0686660-mRNA-1:three_prime_utr;Parent=Msa0686660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
