Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330730 | XP_034932641.1 | 100.000 | 92 | 0 | 0 | 1 | 92 | 48 | 139 | 2.05e-59 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330730 | sp|Q9ZRS8|RL37A_PSEMZ | 97.802 | 91 | 2 | 0 | 1 | 91 | 1 | 91 | 6.61e-60 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330730 | M5WNW1 | 98.913 | 92 | 1 | 0 | 1 | 92 | 37 | 128 | 8.10e-60 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016340 | Msa1330730 | 0.817520 | 3.160501e-52 | -8.615850e-47 |
| Msa0086160 | Msa1330730 | 0.826660 | 2.401885e-54 | -8.615850e-47 |
| Msa0087910 | Msa1330730 | 0.852198 | 5.403848e-61 | -8.615850e-47 |
| Msa0100600 | Msa1330730 | 0.809622 | 1.727259e-50 | -8.615850e-47 |
| Msa0114600 | Msa1330730 | 0.881447 | 2.381732e-70 | -8.615850e-47 |
| Msa0602900 | Msa1330730 | 0.836553 | 8.749076e-57 | -8.615850e-47 |
| Msa0605890 | Msa1330730 | 0.868670 | 5.494047e-66 | -8.615850e-47 |
| Msa0643960 | Msa1330730 | 0.842162 | 3.059346e-58 | -8.615850e-47 |
| Msa0649580 | Msa1330730 | 0.836951 | 6.925756e-57 | -8.615850e-47 |
| Msa0663400 | Msa1330730 | 0.834199 | 3.441386e-56 | -8.615850e-47 |
| Msa0681220 | Msa1330730 | 0.802526 | 5.381601e-49 | -8.615850e-47 |
| Msa0749000 | Msa1330730 | 0.839892 | 1.207599e-57 | -8.615850e-47 |
| Msa0796490 | Msa1330730 | 0.847433 | 1.159951e-59 | -8.615850e-47 |
| Msa0128330 | Msa1330730 | 0.810346 | 1.206617e-50 | -8.615850e-47 |
| Msa0134580 | Msa1330730 | 0.835592 | 1.534289e-56 | -8.615850e-47 |
| Msa0144800 | Msa1330730 | 0.817768 | 2.778472e-52 | -8.615850e-47 |
| Msa0146610 | Msa1330730 | 0.808204 | 3.474792e-50 | -8.615850e-47 |
| Msa0167860 | Msa1330730 | 0.858986 | 5.650420e-63 | -8.615850e-47 |
| Msa0174580 | Msa1330730 | 0.819532 | 1.105215e-52 | -8.615850e-47 |
| Msa0183840 | Msa1330730 | 0.817773 | 2.771288e-52 | -8.615850e-47 |
| Msa0191550 | Msa1330730 | 0.835077 | 2.070258e-56 | -8.615850e-47 |
| Msa0192050 | Msa1330730 | 0.802217 | 6.228683e-49 | -8.615850e-47 |
| Msa0192300 | Msa1330730 | 0.805955 | 1.039420e-49 | -8.615850e-47 |
| Msa0194940 | Msa1330730 | 0.835351 | 1.764928e-56 | -8.615850e-47 |
| Msa0217620 | Msa1330730 | 0.801636 | 8.202398e-49 | -8.615850e-47 |
| Msa0235050 | Msa1330730 | 0.812403 | 4.315623e-51 | -8.615850e-47 |
| Msa1255830 | Msa1330730 | 0.807645 | 4.568437e-50 | -8.615850e-47 |
| Msa1255850 | Msa1330730 | 0.827110 | 1.874641e-54 | -8.615850e-47 |
| Msa1284060 | Msa1330730 | 0.808340 | 3.250390e-50 | -8.615850e-47 |
| Msa1311400 | Msa1330730 | 0.826111 | 3.246062e-54 | -8.615850e-47 |
| Msa1330730 | Msa1351020 | 0.853165 | 2.861657e-61 | -8.615850e-47 |
| Msa1330730 | Msa1351910 | 0.826521 | 2.591772e-54 | -8.615850e-47 |
| Msa1330730 | Msa1385480 | 0.806486 | 8.037476e-50 | -8.615850e-47 |
| Msa1330730 | Msa1397660 | 0.826449 | 2.695928e-54 | -8.615850e-47 |
| Msa1330730 | Msa1432310 | 0.801725 | 7.863124e-49 | -8.615850e-47 |
| Msa1330730 | Msa1446410 | 0.803335 | 3.662351e-49 | -8.615850e-47 |
| Msa0388250 | Msa1330730 | 0.823540 | 1.311069e-53 | -8.615850e-47 |
| Msa0416210 | Msa1330730 | 0.805421 | 1.345988e-49 | -8.615850e-47 |
| Msa0419710 | Msa1330730 | 0.876739 | 1.098427e-68 | -8.615850e-47 |
| Msa0426250 | Msa1330730 | 0.820660 | 6.100700e-53 | -8.615850e-47 |
| Msa0450150 | Msa1330730 | 0.880967 | 3.545653e-70 | -8.615850e-47 |
| Msa0468440 | Msa1330730 | 0.880145 | 6.984557e-70 | -8.615850e-47 |
| Msa1004780 | Msa1330730 | 0.855173 | 7.537240e-62 | -8.615850e-47 |
| Msa1025200 | Msa1330730 | 0.816485 | 5.398641e-52 | -8.615850e-47 |
| Msa1047020 | Msa1330730 | 0.814483 | 1.505522e-51 | -8.615850e-47 |
| Msa1078980 | Msa1330730 | 0.807782 | 4.272820e-50 | -8.615850e-47 |
| Msa0277600 | Msa1330730 | 0.848849 | 4.715833e-60 | -8.615850e-47 |
| Msa0281330 | Msa1330730 | 0.846428 | 2.185487e-59 | -8.615850e-47 |
| Msa0281370 | Msa1330730 | 0.851355 | 9.366932e-61 | -8.615850e-47 |
| Msa0313060 | Msa1330730 | 0.849977 | 2.286054e-60 | -8.615850e-47 |
| Msa0315430 | Msa1330730 | 0.846209 | 2.507681e-59 | -8.615850e-47 |
| Msa1109310 | Msa1330730 | 0.819177 | 1.331908e-52 | -8.615850e-47 |
| Msa1115510 | Msa1330730 | 0.883432 | 4.510189e-71 | -8.615850e-47 |
| Msa1126690 | Msa1330730 | 0.824777 | 6.716818e-54 | -8.615850e-47 |
| Msa1147670 | Msa1330730 | 0.833927 | 4.025954e-56 | -8.615850e-47 |
| Msa1164150 | Msa1330730 | 0.819566 | 1.085646e-52 | -8.615850e-47 |
| Msa1169180 | Msa1330730 | 0.810301 | 1.234104e-50 | -8.615850e-47 |
| Msa1208330 | Msa1330730 | 0.913163 | 8.459392e-84 | -8.615850e-47 |
| Msa0529900 | Msa1330730 | 0.826131 | 3.210441e-54 | -8.615850e-47 |
| Msa0547920 | Msa1330730 | 0.841308 | 5.139960e-58 | -8.615850e-47 |
| Msa0550490 | Msa1330730 | 0.814962 | 1.179422e-51 | -8.615850e-47 |
| Msa0573550 | Msa1330730 | 0.877899 | 4.337250e-69 | -8.615850e-47 |
| Msa0585570 | Msa1330730 | 0.828145 | 1.058083e-54 | -8.615850e-47 |
| Msa0846900 | Msa1330730 | 0.800041 | 1.735789e-48 | -8.615850e-47 |
| Msa0929700 | Msa1330730 | 0.842559 | 2.401502e-58 | -8.615850e-47 |
| Msa0930890 | Msa1330730 | 0.812875 | 3.401938e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330730 | MtrunA17_Chr8g0336121 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Msa1330730 | MtrunA17_Chr4g0055341 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Msa1330730 | MtrunA17_Chr4g0057431 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Msa1330730 | MtrunA17_Chr8g0336341 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330730 | AT3G10950.1 | 93.478 | 92 | 6 | 0 | 1 | 92 | 1 | 92 | 4.50e-59 | 176 |
| Msa1330730 | AT3G60245.1 | 92.308 | 91 | 7 | 0 | 1 | 91 | 1 | 91 | 8.73e-58 | 172 |
Find 40 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCGTATTCTATAACTTTA+AGG | 0.098185 | 8_4:-49978715 | None:intergenic |
| AAACGGTGAGATAGAGAATT+AGG | 0.190431 | 8_4:+49976989 | None:intergenic |
| ATGGTAGCATTATAATATTT+TGG | 0.275986 | 8_4:+49978692 | Msa1330730:three_prime_UTR |
| TAGTAGAACAATCATGCTTC+TGG | 0.312516 | 8_4:+49978815 | Msa1330730:three_prime_UTR |
| AGAGAAAGGCTGTAGGAATA+TGG | 0.316747 | 8_4:+49978182 | Msa1330730:CDS |
| AACGGTGAGATAGAGAATTA+GGG | 0.360740 | 8_4:+49976990 | None:intergenic |
| AAGCATCAAAAGAAACTATC+AGG | 0.380649 | 8_4:-49978593 | None:intergenic |
| GAGAAAGGCTGTAGGAATAT+GGG | 0.416937 | 8_4:+49978183 | Msa1330730:CDS |
| GCTGGTATCGTTGGCAAATA+CGG | 0.433650 | 8_4:+49977287 | Msa1330730:CDS |
| ATGATATTAGGTACCCGTTA+TGG | 0.441488 | 8_4:+49977959 | Msa1330730:intron |
| GTACAACCAATGTAAATCTC+TGG | 0.443007 | 8_4:-49978457 | None:intergenic |
| CTGCAAGTGCCGTGACTGTT+CGG | 0.445396 | 8_4:+49978342 | Msa1330730:CDS |
| TGACTGTTCGGAGCACCATC+AGG | 0.472923 | 8_4:+49978354 | Msa1330730:CDS |
| ACGCAAACTAGCACCATAAC+GGG | 0.476774 | 8_4:-49977972 | None:intergenic |
| TTGTTCCCTCAACCTCCTGA+TGG | 0.500191 | 8_4:-49978369 | None:intergenic |
| GGAGCACCATCAGGAGGTTG+AGG | 0.503709 | 8_4:+49978363 | Msa1330730:CDS |
| TGAAAGTGGCAGCGGTGGAA+TGG | 0.513444 | 8_4:-49977027 | None:intergenic |
| AGGTGTTCGCGGACAATGAA+AGG | 0.515418 | 8_4:-49978573 | None:intergenic |
| TACGCAAACTAGCACCATAA+CGG | 0.535734 | 8_4:-49977973 | None:intergenic |
| AGAAAGGCTGTAGGAATATG+GGG | 0.537082 | 8_4:+49978184 | Msa1330730:CDS |
| ACTAAGAGAACTAAGAAGGC+TGG | 0.546098 | 8_4:+49977269 | Msa1330730:CDS |
| GAGCACCATCAGGAGGTTGA+GGG | 0.548544 | 8_4:+49978364 | Msa1330730:CDS |
| ACTAAGAAGGCTGGTATCGT+TGG | 0.554051 | 8_4:+49977278 | Msa1330730:CDS |
| TTGTGATTATGTCGAGGCCA+TGG | 0.565752 | 8_4:+49978673 | Msa1330730:three_prime_UTR |
| GCAGACTAAGAGAACTAAGA+AGG | 0.566891 | 8_4:+49977265 | Msa1330730:intron |
| GATTGCGGTAAAGTGAAAGC+AGG | 0.587249 | 8_4:+49978214 | Msa1330730:CDS |
| AGCTATGAAAGTGGCAGCGG+TGG | 0.595651 | 8_4:-49977032 | None:intergenic |
| TGTAGGAATATGGGGATGCA+AGG | 0.599232 | 8_4:+49978192 | Msa1330730:CDS |
| TAAAGTTATAGAATACGCAA+AGG | 0.599704 | 8_4:+49978718 | Msa1330730:three_prime_UTR |
| AAAATATTATAATGCTACCA+TGG | 0.603906 | 8_4:-49978690 | None:intergenic |
| GATGGTGCTCCGAACAGTCA+CGG | 0.619064 | 8_4:-49978351 | None:intergenic |
| AAGAAACTATCAGGTGTTCG+CGG | 0.620193 | 8_4:-49978584 | None:intergenic |
| GCAGTATGCTGTGAAGAGAA+AGG | 0.632531 | 8_4:+49978168 | Msa1330730:intron |
| TGCGGTAAAGTGAAAGCAGG+CGG | 0.647382 | 8_4:+49978217 | Msa1330730:CDS |
| GTGAGCTATGAAAGTGGCAG+CGG | 0.649523 | 8_4:-49977035 | None:intergenic |
| ATATGGGGATGCAAGGATTG+CGG | 0.650089 | 8_4:+49978199 | Msa1330730:CDS |
| GGAGGTGTGAGCTATGAAAG+TGG | 0.655433 | 8_4:-49977041 | None:intergenic |
| GCTGTGAAGAGAAAGGCTGT+AGG | 0.663437 | 8_4:+49978175 | Msa1330730:CDS |
| CTGTTCGGAGCACCATCAGG+AGG | 0.673364 | 8_4:+49978357 | Msa1330730:CDS |
| ACAATGAAAGGAAACAACAA+AGG | 0.690000 | 8_4:-49978561 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTAAATGTTTTAAATA+TGG | + | chr8_4:49977389-49977408 | Msa1330730:intron | 10.0% |
| !!! | AATAAATAATATTTTATGCA+AGG | + | chr8_4:49977641-49977660 | Msa1330730:intron | 10.0% |
| !!! | ATTATATTTTATGTAAAACA+AGG | - | chr8_4:49977872-49977891 | None:intergenic | 10.0% |
| !!! | TTTACTAAATGTTTTAAATA+TGG | + | chr8_4:49977389-49977408 | Msa1330730:intron | 10.0% |
| !!! | AATAAATAATATTTTATGCA+AGG | + | chr8_4:49977641-49977660 | Msa1330730:intron | 10.0% |
| !!! | ATTATATTTTATGTAAAACA+AGG | - | chr8_4:49977872-49977891 | None:intergenic | 10.0% |
| !! | TATACATAGATATATGTATA+TGG | + | chr8_4:49977526-49977545 | Msa1330730:intron | 15.0% |
| !!! | TTTTATTTTTCAAATCTGAA+AGG | + | chr8_4:49978282-49978301 | Msa1330730:intron | 15.0% |
| !! | TATACATAGATATATGTATA+TGG | + | chr8_4:49977526-49977545 | Msa1330730:intron | 15.0% |
| !!! | TTTTATTTTTCAAATCTGAA+AGG | + | chr8_4:49978282-49978301 | Msa1330730:intron | 15.0% |
| !!! | ACAAAGAATTTGTAAGATTT+TGG | - | chr8_4:49977318-49977337 | None:intergenic | 20.0% |
| !!! | AAATATGGTTTTGTTTATGA+TGG | + | chr8_4:49977404-49977423 | Msa1330730:intron | 20.0% |
| !! | ACAAATACAATTCATGAATT+GGG | - | chr8_4:49977838-49977857 | None:intergenic | 20.0% |
| !! | TACAAATACAATTCATGAAT+TGG | - | chr8_4:49977839-49977858 | None:intergenic | 20.0% |
| !! | TTTATGAGAAGTTAATTCAT+TGG | + | chr8_4:49977927-49977946 | Msa1330730:intron | 20.0% |
| !!! | TGGTTTTATTGTATGATATT+AGG | + | chr8_4:49977947-49977966 | Msa1330730:intron | 20.0% |
| !!! | AAATTTTTCTGTGAATTTTG+TGG | + | chr8_4:49978031-49978050 | Msa1330730:CDS | 20.0% |
| !!! | ATCTAAGTATTTAGTTTAGT+TGG | + | chr8_4:49978095-49978114 | Msa1330730:intron | 20.0% |
| !! | GAAAAATAAAACATTGAGAA+AGG | - | chr8_4:49978273-49978292 | None:intergenic | 20.0% |
| !! | AAAATATTATAATGCTACCA+TGG | - | chr8_4:49978693-49978712 | None:intergenic | 20.0% |
| !!! | ATGGTAGCATTATAATATTT+TGG | + | chr8_4:49978692-49978711 | Msa1330730:three_prime_UTR | 20.0% |
| !!! | AGGTTTTACATTTATTTTGA+AGG | + | chr8_4:49978738-49978757 | Msa1330730:three_prime_UTR | 20.0% |
| !!! | ACAAAGAATTTGTAAGATTT+TGG | - | chr8_4:49977318-49977337 | None:intergenic | 20.0% |
| !!! | AAATATGGTTTTGTTTATGA+TGG | + | chr8_4:49977404-49977423 | Msa1330730:intron | 20.0% |
| !! | ACAAATACAATTCATGAATT+GGG | - | chr8_4:49977838-49977857 | None:intergenic | 20.0% |
| !! | TACAAATACAATTCATGAAT+TGG | - | chr8_4:49977839-49977858 | None:intergenic | 20.0% |
| !! | TTTATGAGAAGTTAATTCAT+TGG | + | chr8_4:49977927-49977946 | Msa1330730:intron | 20.0% |
| !!! | TGGTTTTATTGTATGATATT+AGG | + | chr8_4:49977947-49977966 | Msa1330730:intron | 20.0% |
| !!! | AAATTTTTCTGTGAATTTTG+TGG | + | chr8_4:49978031-49978050 | Msa1330730:CDS | 20.0% |
| !!! | ATCTAAGTATTTAGTTTAGT+TGG | + | chr8_4:49978095-49978114 | Msa1330730:intron | 20.0% |
| !! | GAAAAATAAAACATTGAGAA+AGG | - | chr8_4:49978273-49978292 | None:intergenic | 20.0% |
| !! | AAAATATTATAATGCTACCA+TGG | - | chr8_4:49978693-49978712 | None:intergenic | 20.0% |
| !!! | ATGGTAGCATTATAATATTT+TGG | + | chr8_4:49978692-49978711 | Msa1330730:three_prime_UTR | 20.0% |
| !!! | AGGTTTTACATTTATTTTGA+AGG | + | chr8_4:49978738-49978757 | Msa1330730:three_prime_UTR | 20.0% |
| !! | TTGAAAGAGAAGTTTAGAAT+TGG | - | chr8_4:49977125-49977144 | None:intergenic | 25.0% |
| ! | AAAATAAACCAATCCAAACT+AGG | - | chr8_4:49977595-49977614 | None:intergenic | 25.0% |
| !!! | TTGGTTTATTTTTGAGTTTG+TGG | + | chr8_4:49977603-49977622 | Msa1330730:intron | 25.0% |
| ! | GATTTATTTGTAACTCTTCA+AGG | + | chr8_4:49977895-49977914 | Msa1330730:intron | 25.0% |
| ! | ATGATATACAACATTACACA+AGG | - | chr8_4:49978066-49978085 | None:intergenic | 25.0% |
| ! | AAAACATTGAGAAAGGAATA+AGG | - | chr8_4:49978266-49978285 | None:intergenic | 25.0% |
| ! | ATCAACAAAAGAAAAACACT+TGG | - | chr8_4:49978639-49978658 | None:intergenic | 25.0% |
| !!! | TTTTATTTGTGATTATGTCG+AGG | + | chr8_4:49978667-49978686 | Msa1330730:three_prime_UTR | 25.0% |
| ! | TTGCGTATTCTATAACTTTA+AGG | - | chr8_4:49978718-49978737 | None:intergenic | 25.0% |
| ! | TAAAGTTATAGAATACGCAA+AGG | + | chr8_4:49978718-49978737 | Msa1330730:three_prime_UTR | 25.0% |
| !! | TTGAAAGAGAAGTTTAGAAT+TGG | - | chr8_4:49977125-49977144 | None:intergenic | 25.0% |
| ! | AAAATAAACCAATCCAAACT+AGG | - | chr8_4:49977595-49977614 | None:intergenic | 25.0% |
| !!! | TTGGTTTATTTTTGAGTTTG+TGG | + | chr8_4:49977603-49977622 | Msa1330730:intron | 25.0% |
| ! | GATTTATTTGTAACTCTTCA+AGG | + | chr8_4:49977895-49977914 | Msa1330730:intron | 25.0% |
| ! | ATGATATACAACATTACACA+AGG | - | chr8_4:49978066-49978085 | None:intergenic | 25.0% |
| ! | AAAACATTGAGAAAGGAATA+AGG | - | chr8_4:49978266-49978285 | None:intergenic | 25.0% |
| ! | ATCAACAAAAGAAAAACACT+TGG | - | chr8_4:49978639-49978658 | None:intergenic | 25.0% |
| !!! | TTTTATTTGTGATTATGTCG+AGG | + | chr8_4:49978667-49978686 | Msa1330730:three_prime_UTR | 25.0% |
| ! | TTGCGTATTCTATAACTTTA+AGG | - | chr8_4:49978718-49978737 | None:intergenic | 25.0% |
| ! | TAAAGTTATAGAATACGCAA+AGG | + | chr8_4:49978718-49978737 | Msa1330730:three_prime_UTR | 25.0% |
| ! | ATTTTTACAAAGATCGAAGG+AGG | - | chr8_4:49977062-49977081 | None:intergenic | 30.0% |
| TCCTTCGATCTTTGTAAAAA+TGG | + | chr8_4:49977061-49977080 | Msa1330730:exon | 30.0% | |
| !! | ACCATTTTTACAAAGATCGA+AGG | - | chr8_4:49977065-49977084 | None:intergenic | 30.0% |
| ! | TTTAGAATTGGATTGGATGA+TGG | - | chr8_4:49977113-49977132 | None:intergenic | 30.0% |
| ! | AGAGAAGTTTAGAATTGGAT+TGG | - | chr8_4:49977120-49977139 | None:intergenic | 30.0% |
| TTACAAATCTGAGTGAACAA+AGG | - | chr8_4:49977168-49977187 | None:intergenic | 30.0% | |
| !!! | TAAGCTATTTTTCATAAGCC+AGG | + | chr8_4:49977747-49977766 | Msa1330730:intron | 30.0% |
| ACCTAAAATGTAACTACCTA+GGG | - | chr8_4:49977773-49977792 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGGTTTGATGTTT+TGG | + | chr8_4:49977785-49977804 | Msa1330730:intron | 30.0% |
| ! | TTTAGGTGGTTTGATGTTTT+GGG | + | chr8_4:49977786-49977805 | Msa1330730:intron | 30.0% |
| ! | TTTCTGTGAATTTTGTGGAA+AGG | + | chr8_4:49978036-49978055 | Msa1330730:CDS | 30.0% |
| ATAATGAGAACAAAGTCATG+AGG | - | chr8_4:49978312-49978331 | None:intergenic | 30.0% | |
| ! | GATTTTCCAGAGATTTACAT+TGG | + | chr8_4:49978451-49978470 | Msa1330730:three_prime_UTR | 30.0% |
| ACAATGAAAGGAAACAACAA+AGG | - | chr8_4:49978564-49978583 | None:intergenic | 30.0% | |
| AAGCATCAAAAGAAACTATC+AGG | - | chr8_4:49978596-49978615 | None:intergenic | 30.0% | |
| ! | CTTAGTAGAACGATTTTGAA+GGG | + | chr8_4:49978776-49978795 | Msa1330730:intron | 30.0% |
| ! | ATTTTTACAAAGATCGAAGG+AGG | - | chr8_4:49977062-49977081 | None:intergenic | 30.0% |
| TCCTTCGATCTTTGTAAAAA+TGG | + | chr8_4:49977061-49977080 | Msa1330730:exon | 30.0% | |
| !! | ACCATTTTTACAAAGATCGA+AGG | - | chr8_4:49977065-49977084 | None:intergenic | 30.0% |
| ! | TTTAGAATTGGATTGGATGA+TGG | - | chr8_4:49977113-49977132 | None:intergenic | 30.0% |
| ! | AGAGAAGTTTAGAATTGGAT+TGG | - | chr8_4:49977120-49977139 | None:intergenic | 30.0% |
| TTACAAATCTGAGTGAACAA+AGG | - | chr8_4:49977168-49977187 | None:intergenic | 30.0% | |
| !!! | TAAGCTATTTTTCATAAGCC+AGG | + | chr8_4:49977747-49977766 | Msa1330730:intron | 30.0% |
| ACCTAAAATGTAACTACCTA+GGG | - | chr8_4:49977773-49977792 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGGTTTGATGTTT+TGG | + | chr8_4:49977785-49977804 | Msa1330730:intron | 30.0% |
| ! | TTTAGGTGGTTTGATGTTTT+GGG | + | chr8_4:49977786-49977805 | Msa1330730:intron | 30.0% |
| ! | TTTCTGTGAATTTTGTGGAA+AGG | + | chr8_4:49978036-49978055 | Msa1330730:CDS | 30.0% |
| ATAATGAGAACAAAGTCATG+AGG | - | chr8_4:49978312-49978331 | None:intergenic | 30.0% | |
| ! | GATTTTCCAGAGATTTACAT+TGG | + | chr8_4:49978451-49978470 | Msa1330730:three_prime_UTR | 30.0% |
| ACAATGAAAGGAAACAACAA+AGG | - | chr8_4:49978564-49978583 | None:intergenic | 30.0% | |
| AAGCATCAAAAGAAACTATC+AGG | - | chr8_4:49978596-49978615 | None:intergenic | 30.0% | |
| ! | CTTAGTAGAACGATTTTGAA+GGG | + | chr8_4:49978776-49978795 | Msa1330730:intron | 30.0% |
| !! | TTGGATTGGATGATGGAAAA+GGG | - | chr8_4:49977106-49977125 | None:intergenic | 35.0% |
| !! | ATTGGATTGGATGATGGAAA+AGG | - | chr8_4:49977107-49977126 | None:intergenic | 35.0% |
| CACCTAAAATGTAACTACCT+AGG | - | chr8_4:49977774-49977793 | None:intergenic | 35.0% | |
| ! | CTAGGTAGTTACATTTTAGG+TGG | + | chr8_4:49977772-49977791 | Msa1330730:intron | 35.0% |
| ! | TTAGGTGGTTTGATGTTTTG+GGG | + | chr8_4:49977787-49977806 | Msa1330730:intron | 35.0% |
| ATGATATTAGGTACCCGTTA+TGG | + | chr8_4:49977959-49977978 | Msa1330730:intron | 35.0% | |
| GCGTAAGCAGATTAAAAAGA+TGG | + | chr8_4:49977991-49978010 | Msa1330730:CDS | 35.0% | |
| GGTAATTGATCATCAGAACT+CGG | - | chr8_4:49978144-49978163 | None:intergenic | 35.0% | |
| GTACAACCAATGTAAATCTC+TGG | - | chr8_4:49978460-49978479 | None:intergenic | 35.0% | |
| ! | GCTTAGTAGAACGATTTTGA+AGG | + | chr8_4:49978775-49978794 | Msa1330730:intron | 35.0% |
| TAGTAGAACAATCATGCTTC+TGG | + | chr8_4:49978815-49978834 | Msa1330730:three_prime_UTR | 35.0% | |
| !! | TTGGATTGGATGATGGAAAA+GGG | - | chr8_4:49977106-49977125 | None:intergenic | 35.0% |
| !! | ATTGGATTGGATGATGGAAA+AGG | - | chr8_4:49977107-49977126 | None:intergenic | 35.0% |
| CACCTAAAATGTAACTACCT+AGG | - | chr8_4:49977774-49977793 | None:intergenic | 35.0% | |
| ! | CTAGGTAGTTACATTTTAGG+TGG | + | chr8_4:49977772-49977791 | Msa1330730:intron | 35.0% |
| ! | TTAGGTGGTTTGATGTTTTG+GGG | + | chr8_4:49977787-49977806 | Msa1330730:intron | 35.0% |
| ATGATATTAGGTACCCGTTA+TGG | + | chr8_4:49977959-49977978 | Msa1330730:intron | 35.0% | |
| GCGTAAGCAGATTAAAAAGA+TGG | + | chr8_4:49977991-49978010 | Msa1330730:CDS | 35.0% | |
| GGTAATTGATCATCAGAACT+CGG | - | chr8_4:49978144-49978163 | None:intergenic | 35.0% | |
| GTACAACCAATGTAAATCTC+TGG | - | chr8_4:49978460-49978479 | None:intergenic | 35.0% | |
| ! | GCTTAGTAGAACGATTTTGA+AGG | + | chr8_4:49978775-49978794 | Msa1330730:intron | 35.0% |
| TAGTAGAACAATCATGCTTC+TGG | + | chr8_4:49978815-49978834 | Msa1330730:three_prime_UTR | 35.0% | |
| !! | TGGATTGGATGATGGAAAAG+GGG | - | chr8_4:49977105-49977124 | None:intergenic | 40.0% |
| GCAGACTAAGAGAACTAAGA+AGG | + | chr8_4:49977265-49977284 | Msa1330730:intron | 40.0% | |
| ACTAAGAGAACTAAGAAGGC+TGG | + | chr8_4:49977269-49977288 | Msa1330730:CDS | 40.0% | |
| TGACTACACCTAGTTTGGAT+TGG | + | chr8_4:49977584-49977603 | Msa1330730:intron | 40.0% | |
| ! | GCCCTAGGTAGTTACATTTT+AGG | + | chr8_4:49977769-49977788 | Msa1330730:intron | 40.0% |
| !! | TAGGTGGTTTGATGTTTTGG+GGG | + | chr8_4:49977788-49977807 | Msa1330730:intron | 40.0% |
| TACGCAAACTAGCACCATAA+CGG | - | chr8_4:49977976-49977995 | None:intergenic | 40.0% | |
| !! | CAGAACTCGGCATTTTGAAA+AGG | - | chr8_4:49978131-49978150 | None:intergenic | 40.0% |
| AGAGAAAGGCTGTAGGAATA+TGG | + | chr8_4:49978182-49978201 | Msa1330730:CDS | 40.0% | |
| GAGAAAGGCTGTAGGAATAT+GGG | + | chr8_4:49978183-49978202 | Msa1330730:CDS | 40.0% | |
| AGAAAGGCTGTAGGAATATG+GGG | + | chr8_4:49978184-49978203 | Msa1330730:CDS | 40.0% | |
| AAGAAACTATCAGGTGTTCG+CGG | - | chr8_4:49978587-49978606 | None:intergenic | 40.0% | |
| !! | TGGATTGGATGATGGAAAAG+GGG | - | chr8_4:49977105-49977124 | None:intergenic | 40.0% |
| GCAGACTAAGAGAACTAAGA+AGG | + | chr8_4:49977265-49977284 | Msa1330730:intron | 40.0% | |
| ACTAAGAGAACTAAGAAGGC+TGG | + | chr8_4:49977269-49977288 | Msa1330730:CDS | 40.0% | |
| TGACTACACCTAGTTTGGAT+TGG | + | chr8_4:49977584-49977603 | Msa1330730:intron | 40.0% | |
| ! | GCCCTAGGTAGTTACATTTT+AGG | + | chr8_4:49977769-49977788 | Msa1330730:intron | 40.0% |
| !! | TAGGTGGTTTGATGTTTTGG+GGG | + | chr8_4:49977788-49977807 | Msa1330730:intron | 40.0% |
| TACGCAAACTAGCACCATAA+CGG | - | chr8_4:49977976-49977995 | None:intergenic | 40.0% | |
| !! | CAGAACTCGGCATTTTGAAA+AGG | - | chr8_4:49978131-49978150 | None:intergenic | 40.0% |
| AGAGAAAGGCTGTAGGAATA+TGG | + | chr8_4:49978182-49978201 | Msa1330730:CDS | 40.0% | |
| GAGAAAGGCTGTAGGAATAT+GGG | + | chr8_4:49978183-49978202 | Msa1330730:CDS | 40.0% | |
| AGAAAGGCTGTAGGAATATG+GGG | + | chr8_4:49978184-49978203 | Msa1330730:CDS | 40.0% | |
| AAGAAACTATCAGGTGTTCG+CGG | - | chr8_4:49978587-49978606 | None:intergenic | 40.0% | |
| ! | ATGATGGAAAAGGGGAGAAG+GGG | - | chr8_4:49977097-49977116 | None:intergenic | 45.0% |
| !! | GATGATGGAAAAGGGGAGAA+GGG | - | chr8_4:49977098-49977117 | None:intergenic | 45.0% |
| ACTAAGAAGGCTGGTATCGT+TGG | + | chr8_4:49977278-49977297 | Msa1330730:CDS | 45.0% | |
| GCTGGTATCGTTGGCAAATA+CGG | + | chr8_4:49977287-49977306 | Msa1330730:CDS | 45.0% | |
| GTAGCTGACTACACCTAGTT+TGG | + | chr8_4:49977579-49977598 | Msa1330730:intron | 45.0% | |
| ! | TTTTTCATAAGCCAGGCCCT+AGG | + | chr8_4:49977754-49977773 | Msa1330730:intron | 45.0% |
| AAATGTAACTACCTAGGGCC+TGG | - | chr8_4:49977768-49977787 | None:intergenic | 45.0% | |
| ACGCAAACTAGCACCATAAC+GGG | - | chr8_4:49977975-49977994 | None:intergenic | 45.0% | |
| TCTTCACAGCATACTGCAAC+AGG | - | chr8_4:49978165-49978184 | None:intergenic | 45.0% | |
| GCAGTATGCTGTGAAGAGAA+AGG | + | chr8_4:49978168-49978187 | Msa1330730:intron | 45.0% | |
| TGTAGGAATATGGGGATGCA+AGG | + | chr8_4:49978192-49978211 | Msa1330730:CDS | 45.0% | |
| ATATGGGGATGCAAGGATTG+CGG | + | chr8_4:49978199-49978218 | Msa1330730:CDS | 45.0% | |
| GATTGCGGTAAAGTGAAAGC+AGG | + | chr8_4:49978214-49978233 | Msa1330730:CDS | 45.0% | |
| TGAGAACAAAGTCATGAGGC+TGG | - | chr8_4:49978308-49978327 | None:intergenic | 45.0% | |
| TTGTGATTATGTCGAGGCCA+TGG | + | chr8_4:49978673-49978692 | Msa1330730:three_prime_UTR | 45.0% | |
| ! | ATGATGGAAAAGGGGAGAAG+GGG | - | chr8_4:49977097-49977116 | None:intergenic | 45.0% |
| !! | GATGATGGAAAAGGGGAGAA+GGG | - | chr8_4:49977098-49977117 | None:intergenic | 45.0% |
| ACTAAGAAGGCTGGTATCGT+TGG | + | chr8_4:49977278-49977297 | Msa1330730:CDS | 45.0% | |
| GCTGGTATCGTTGGCAAATA+CGG | + | chr8_4:49977287-49977306 | Msa1330730:CDS | 45.0% | |
| GTAGCTGACTACACCTAGTT+TGG | + | chr8_4:49977579-49977598 | Msa1330730:intron | 45.0% | |
| ! | TTTTTCATAAGCCAGGCCCT+AGG | + | chr8_4:49977754-49977773 | Msa1330730:intron | 45.0% |
| AAATGTAACTACCTAGGGCC+TGG | - | chr8_4:49977768-49977787 | None:intergenic | 45.0% | |
| ACGCAAACTAGCACCATAAC+GGG | - | chr8_4:49977975-49977994 | None:intergenic | 45.0% | |
| TCTTCACAGCATACTGCAAC+AGG | - | chr8_4:49978165-49978184 | None:intergenic | 45.0% | |
| GCAGTATGCTGTGAAGAGAA+AGG | + | chr8_4:49978168-49978187 | Msa1330730:intron | 45.0% | |
| TGTAGGAATATGGGGATGCA+AGG | + | chr8_4:49978192-49978211 | Msa1330730:CDS | 45.0% | |
| ATATGGGGATGCAAGGATTG+CGG | + | chr8_4:49978199-49978218 | Msa1330730:CDS | 45.0% | |
| GATTGCGGTAAAGTGAAAGC+AGG | + | chr8_4:49978214-49978233 | Msa1330730:CDS | 45.0% | |
| TGAGAACAAAGTCATGAGGC+TGG | - | chr8_4:49978308-49978327 | None:intergenic | 45.0% | |
| TTGTGATTATGTCGAGGCCA+TGG | + | chr8_4:49978673-49978692 | Msa1330730:three_prime_UTR | 45.0% | |
| GTGAGCTATGAAAGTGGCAG+CGG | - | chr8_4:49977038-49977057 | None:intergenic | 50.0% | |
| ! | GGAGGTGTGAGCTATGAAAG+TGG | - | chr8_4:49977044-49977063 | None:intergenic | 50.0% |
| !! | GGATGATGGAAAAGGGGAGA+AGG | - | chr8_4:49977099-49977118 | None:intergenic | 50.0% |
| GCTGTGAAGAGAAAGGCTGT+AGG | + | chr8_4:49978175-49978194 | Msa1330730:CDS | 50.0% | |
| TGCGGTAAAGTGAAAGCAGG+CGG | + | chr8_4:49978217-49978236 | Msa1330730:CDS | 50.0% | |
| TTGTTCCCTCAACCTCCTGA+TGG | - | chr8_4:49978372-49978391 | None:intergenic | 50.0% | |
| AGGTGTTCGCGGACAATGAA+AGG | - | chr8_4:49978576-49978595 | None:intergenic | 50.0% | |
| GTGAGCTATGAAAGTGGCAG+CGG | - | chr8_4:49977038-49977057 | None:intergenic | 50.0% | |
| ! | GGAGGTGTGAGCTATGAAAG+TGG | - | chr8_4:49977044-49977063 | None:intergenic | 50.0% |
| !! | GGATGATGGAAAAGGGGAGA+AGG | - | chr8_4:49977099-49977118 | None:intergenic | 50.0% |
| GCTGTGAAGAGAAAGGCTGT+AGG | + | chr8_4:49978175-49978194 | Msa1330730:CDS | 50.0% | |
| TGCGGTAAAGTGAAAGCAGG+CGG | + | chr8_4:49978217-49978236 | Msa1330730:CDS | 50.0% | |
| TTGTTCCCTCAACCTCCTGA+TGG | - | chr8_4:49978372-49978391 | None:intergenic | 50.0% | |
| AGGTGTTCGCGGACAATGAA+AGG | - | chr8_4:49978576-49978595 | None:intergenic | 50.0% | |
| TGAAAGTGGCAGCGGTGGAA+TGG | - | chr8_4:49977030-49977049 | None:intergenic | 55.0% | |
| AGCTATGAAAGTGGCAGCGG+TGG | - | chr8_4:49977035-49977054 | None:intergenic | 55.0% | |
| ! | CTGCAAGTGCCGTGACTGTT+CGG | + | chr8_4:49978342-49978361 | Msa1330730:CDS | 55.0% |
| GATGGTGCTCCGAACAGTCA+CGG | - | chr8_4:49978354-49978373 | None:intergenic | 55.0% | |
| ! | TGACTGTTCGGAGCACCATC+AGG | + | chr8_4:49978354-49978373 | Msa1330730:CDS | 55.0% |
| GAGCACCATCAGGAGGTTGA+GGG | + | chr8_4:49978364-49978383 | Msa1330730:CDS | 55.0% | |
| TGAAAGTGGCAGCGGTGGAA+TGG | - | chr8_4:49977030-49977049 | None:intergenic | 55.0% | |
| AGCTATGAAAGTGGCAGCGG+TGG | - | chr8_4:49977035-49977054 | None:intergenic | 55.0% | |
| ! | CTGCAAGTGCCGTGACTGTT+CGG | + | chr8_4:49978342-49978361 | Msa1330730:CDS | 55.0% |
| GATGGTGCTCCGAACAGTCA+CGG | - | chr8_4:49978354-49978373 | None:intergenic | 55.0% | |
| ! | TGACTGTTCGGAGCACCATC+AGG | + | chr8_4:49978354-49978373 | Msa1330730:CDS | 55.0% |
| GAGCACCATCAGGAGGTTGA+GGG | + | chr8_4:49978364-49978383 | Msa1330730:CDS | 55.0% | |
| ! | CTGTTCGGAGCACCATCAGG+AGG | + | chr8_4:49978357-49978376 | Msa1330730:CDS | 60.0% |
| ! | GGAGCACCATCAGGAGGTTG+AGG | + | chr8_4:49978363-49978382 | Msa1330730:CDS | 60.0% |
| ! | CTGTTCGGAGCACCATCAGG+AGG | + | chr8_4:49978357-49978376 | Msa1330730:CDS | 60.0% |
| ! | GGAGCACCATCAGGAGGTTG+AGG | + | chr8_4:49978363-49978382 | Msa1330730:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49977000 | 49978886 | 49977000 | ID=Msa1330730;Name=Msa1330730 |
| chr8_4 | mRNA | 49977000 | 49978886 | 49977000 | ID=Msa1330730-mRNA-1;Parent=Msa1330730;Name=Msa1330730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=80|1|1|1|0.8|0.66|6|446|92 |
| chr8_4 | exon | 49977000 | 49977082 | 49977000 | ID=Msa1330730-mRNA-1:exon:14514;Parent=Msa1330730-mRNA-1 |
| chr8_4 | exon | 49977269 | 49977308 | 49977269 | ID=Msa1330730-mRNA-1:exon:14515;Parent=Msa1330730-mRNA-1 |
| chr8_4 | exon | 49977969 | 49978057 | 49977969 | ID=Msa1330730-mRNA-1:exon:14516;Parent=Msa1330730-mRNA-1 |
| chr8_4 | exon | 49978172 | 49978254 | 49978172 | ID=Msa1330730-mRNA-1:exon:14517;Parent=Msa1330730-mRNA-1 |
| chr8_4 | exon | 49978340 | 49978775 | 49978340 | ID=Msa1330730-mRNA-1:exon:14518;Parent=Msa1330730-mRNA-1 |
| chr8_4 | exon | 49978813 | 49978886 | 49978813 | ID=Msa1330730-mRNA-1:exon:14519;Parent=Msa1330730-mRNA-1 |
| chr8_4 | five_prime_UTR | 49977000 | 49977079 | 49977000 | ID=Msa1330730-mRNA-1:five_prime_utr;Parent=Msa1330730-mRNA-1 |
| chr8_4 | CDS | 49977080 | 49977082 | 49977080 | ID=Msa1330730-mRNA-1:cds;Parent=Msa1330730-mRNA-1 |
| chr8_4 | CDS | 49977269 | 49977308 | 49977269 | ID=Msa1330730-mRNA-1:cds;Parent=Msa1330730-mRNA-1 |
| chr8_4 | CDS | 49977969 | 49978057 | 49977969 | ID=Msa1330730-mRNA-1:cds;Parent=Msa1330730-mRNA-1 |
| chr8_4 | CDS | 49978172 | 49978254 | 49978172 | ID=Msa1330730-mRNA-1:cds;Parent=Msa1330730-mRNA-1 |
| chr8_4 | CDS | 49978340 | 49978403 | 49978340 | ID=Msa1330730-mRNA-1:cds;Parent=Msa1330730-mRNA-1 |
| chr8_4 | three_prime_UTR | 49978404 | 49978775 | 49978404 | ID=Msa1330730-mRNA-1:three_prime_utr;Parent=Msa1330730-mRNA-1 |
| chr8_4 | three_prime_UTR | 49978813 | 49978886 | 49978813 | ID=Msa1330730-mRNA-1:three_prime_utr;Parent=Msa1330730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
