Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016340 | sp|Q05046|CH62_CUCMA | 92.389 | 565 | 43 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016340 | Msa0016350 | 0.800111 | 1.680210e-48 | -8.615850e-47 |
| Msa0016340 | Msa0071760 | 0.834436 | 3.001252e-56 | -8.615850e-47 |
| Msa0016340 | Msa0086160 | 0.804253 | 2.360257e-49 | -8.615850e-47 |
| Msa0016340 | Msa0144800 | 0.996996 | 2.735481e-235 | -8.615850e-47 |
| Msa0016340 | Msa0433060 | 0.808136 | 3.592621e-50 | -8.615850e-47 |
| Msa0016340 | Msa0524680 | 0.802441 | 5.602214e-49 | -8.615850e-47 |
| Msa0016340 | Msa0547920 | 0.801379 | 9.259754e-49 | -8.615850e-47 |
| Msa0016340 | Msa0550490 | 0.835632 | 1.498579e-56 | -8.615850e-47 |
| Msa0016340 | Msa0602900 | 0.808274 | 3.356546e-50 | -8.615850e-47 |
| Msa0016340 | Msa0643960 | 0.811975 | 5.349582e-51 | -8.615850e-47 |
| Msa0016340 | Msa0686660 | 0.802454 | 5.568836e-49 | -8.615850e-47 |
| Msa0016340 | Msa1004780 | 0.839548 | 1.483209e-57 | -8.615850e-47 |
| Msa0016340 | Msa1085850 | 0.810136 | 1.339429e-50 | -8.615850e-47 |
| Msa0016340 | Msa1330730 | 0.817520 | 3.160501e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016340 | MtrunA17_Chr1g0196761 | 99.303 | 574 | 4 | 0 | 1 | 574 | 1 | 574 | 0.0 | 1146 |
| Msa0016340 | MtrunA17_Chr1g0196751 | 94.840 | 562 | 29 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1078 |
| Msa0016340 | MtrunA17_Chr8g0342341 | 70.833 | 576 | 166 | 2 | 1 | 574 | 1 | 576 | 0.0 | 802 |
| Msa0016340 | MtrunA17_Chr1g0152151 | 47.664 | 535 | 274 | 4 | 34 | 564 | 47 | 579 | 9.38e-168 | 489 |
| Msa0016340 | MtrunA17_Chr1g0152141 | 47.477 | 535 | 275 | 4 | 34 | 564 | 47 | 579 | 3.89e-167 | 488 |
| Msa0016340 | MtrunA17_Chr4g0028601 | 45.355 | 549 | 288 | 5 | 19 | 558 | 28 | 573 | 5.00e-158 | 464 |
| Msa0016340 | MtrunA17_Chr4g0043731 | 40.850 | 541 | 313 | 6 | 33 | 569 | 40 | 577 | 7.52e-136 | 407 |
| Msa0016340 | MtrunA17_Chr5g0421251 | 44.201 | 457 | 252 | 2 | 47 | 501 | 52 | 507 | 6.26e-135 | 402 |
| Msa0016340 | MtrunA17_Chr7g0272821 | 24.429 | 569 | 325 | 22 | 40 | 562 | 16 | 525 | 1.89e-14 | 76.3 |
| Msa0016340 | MtrunA17_Chr3g0126151 | 91.892 | 37 | 3 | 0 | 142 | 178 | 1 | 37 | 1.10e-13 | 68.6 |
| Msa0016340 | MtrunA17_Chr7g0241881 | 24.077 | 569 | 327 | 22 | 40 | 562 | 16 | 525 | 1.16e-13 | 73.6 |
| Msa0016340 | MtrunA17_Chr1g0212541 | 88.889 | 36 | 4 | 0 | 142 | 177 | 1 | 36 | 1.62e-13 | 65.5 |
| Msa0016340 | MtrunA17_Chr4g0019131 | 91.667 | 36 | 3 | 0 | 142 | 177 | 1 | 36 | 3.11e-13 | 65.5 |
| Msa0016340 | MtrunA17_Chr7g0238391 | 86.486 | 37 | 5 | 0 | 142 | 178 | 1 | 37 | 3.81e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016340 | AT3G23990.1 | 90.053 | 563 | 55 | 1 | 1 | 563 | 1 | 562 | 0.0 | 1026 |
| Msa0016340 | AT2G33210.1 | 86.702 | 564 | 75 | 0 | 1 | 564 | 1 | 564 | 0.0 | 998 |
| Msa0016340 | AT2G33210.2 | 85.993 | 564 | 74 | 1 | 1 | 564 | 1 | 559 | 0.0 | 981 |
| Msa0016340 | AT3G13860.1 | 72.826 | 552 | 147 | 2 | 22 | 572 | 21 | 570 | 0.0 | 810 |
| Msa0016340 | AT5G56500.2 | 47.731 | 551 | 283 | 3 | 28 | 574 | 46 | 595 | 8.17e-172 | 500 |
| Msa0016340 | AT5G56500.1 | 47.731 | 551 | 283 | 3 | 28 | 574 | 46 | 595 | 8.17e-172 | 500 |
| Msa0016340 | AT3G13470.1 | 46.984 | 547 | 282 | 5 | 33 | 574 | 51 | 594 | 5.28e-165 | 483 |
| Msa0016340 | AT1G55490.5 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0016340 | AT1G55490.1 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0016340 | AT1G55490.3 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0016340 | AT1G55490.4 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0016340 | AT1G55490.2 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.63e-164 | 481 |
| Msa0016340 | AT1G26230.1 | 43.284 | 536 | 298 | 4 | 33 | 564 | 39 | 572 | 6.92e-156 | 460 |
| Msa0016340 | AT1G26230.4 | 43.907 | 517 | 286 | 3 | 50 | 564 | 6 | 520 | 6.16e-155 | 456 |
| Msa0016340 | AT2G28000.1 | 44.508 | 528 | 289 | 3 | 28 | 553 | 42 | 567 | 8.90e-155 | 456 |
| Msa0016340 | AT1G26230.3 | 44.055 | 513 | 283 | 3 | 54 | 564 | 2 | 512 | 1.66e-154 | 454 |
| Msa0016340 | AT1G26230.2 | 43.008 | 472 | 264 | 3 | 33 | 500 | 39 | 509 | 4.14e-137 | 410 |
| Msa0016340 | AT5G18820.1 | 39.259 | 540 | 322 | 4 | 34 | 569 | 35 | 572 | 1.13e-122 | 374 |
| Msa0016340 | AT1G26230.5 | 43.210 | 405 | 227 | 2 | 33 | 435 | 39 | 442 | 1.34e-119 | 362 |
| Msa0016340 | AT5G18820.2 | 38.197 | 466 | 283 | 3 | 108 | 569 | 2 | 466 | 8.43e-99 | 308 |
| Msa0016340 | AT5G18820.3 | 37.995 | 379 | 234 | 1 | 34 | 412 | 35 | 412 | 1.06e-81 | 263 |
| Msa0016340 | AT5G20890.1 | 23.199 | 569 | 332 | 21 | 40 | 562 | 16 | 525 | 6.03e-13 | 72.0 |
Find 169 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGCCTTGGTTGCATTTA+AGG | 0.066385 | 1_1:-27149728 | None:intergenic |
| GGAACAATTCCTTAATATTT+TGG | 0.096358 | 1_1:-27150829 | None:intergenic |
| GAAAGATTGGCCAAGCTTTC+TGG | 0.129629 | 1_1:+27149532 | Msa0016340:CDS |
| AATTATCCAAAACGCTTTAA+AGG | 0.167858 | 1_1:+27149937 | Msa0016340:CDS |
| ATTAAGAACATACACATTTC+TGG | 0.203030 | 1_1:-27148137 | None:intergenic |
| AGAAGCAGCTTCTAGGGTTT+AGG | 0.243576 | 1_1:-27146038 | None:intergenic |
| GCGATCAAAGCCCCTGGTTT+TGG | 0.247960 | 1_1:+27148917 | Msa0016340:CDS |
| TAAGCTTCGTGCTGGAATTA+AGG | 0.250806 | 1_1:+27148787 | Msa0016340:CDS |
| CAATTCATTCCAAAATATTA+AGG | 0.253245 | 1_1:+27150820 | Msa0016340:three_prime_UTR |
| CAGGATCTCGCTGTTCTTAC+AGG | 0.260673 | 1_1:+27148962 | Msa0016340:CDS |
| CACGCCAAATTTGATCTCTT+TGG | 0.262496 | 1_1:-27146668 | None:intergenic |
| ACCTATCTTCTGATCAAAAT+TGG | 0.264660 | 1_1:-27149909 | None:intergenic |
| GAAGCAGCTTCTAGGGTTTA+GGG | 0.266480 | 1_1:-27146037 | None:intergenic |
| GGAGCATCTTTATCTTCTTT+TGG | 0.274868 | 1_1:-27150595 | None:intergenic |
| GCTGCCAAAGAGATCAAATT+TGG | 0.276119 | 1_1:+27146664 | Msa0016340:CDS |
| AACACACCTTTAAAGCGTTT+TGG | 0.279175 | 1_1:-27149943 | None:intergenic |
| CTCTAGAAGAAGCAGCTTCT+AGG | 0.310007 | 1_1:-27146045 | None:intergenic |
| GCTAATGGGGATAGAGAAAT+TGG | 0.310768 | 1_1:+27147786 | Msa0016340:CDS |
| GGCTCGTGCTTTGATGCTTA+AGG | 0.319494 | 1_1:+27146693 | Msa0016340:CDS |
| TGTTGTTGTTGGTAAACTTT+TGG | 0.322472 | 1_1:+27150189 | Msa0016340:CDS |
| AGTATTAGAGTTAGCTTTGA+AGG | 0.325433 | 1_1:+27148611 | Msa0016340:CDS |
| GATGACACTGTCATTCTTGA+TGG | 0.339637 | 1_1:+27149289 | Msa0016340:CDS |
| TTCTGGTTTGTTATGAAATA+CGG | 0.342174 | 1_1:-27148111 | None:intergenic |
| AAGAATGACAGTGTCATCTT+TGG | 0.342488 | 1_1:-27149284 | None:intergenic |
| TTGATCCATTGAAGGTGATT+AGG | 0.344579 | 1_1:+27150415 | Msa0016340:CDS |
| TGGAGGAGTTGCAGTGCTTA+AGG | 0.349238 | 1_1:+27149552 | Msa0016340:CDS |
| TCTTACCCGGGCAATATTTA+CGG | 0.358409 | 1_1:+27147514 | Msa0016340:CDS |
| ATACACATTTCTGGTTCTTC+TGG | 0.367623 | 1_1:-27148128 | None:intergenic |
| GAACAGGATAATCCTGATCT+TGG | 0.368234 | 1_1:+27150211 | Msa0016340:CDS |
| AAGGATAAAGTCAAGAATAT+TGG | 0.369421 | 1_1:+27147099 | Msa0016340:CDS |
| ATTAGGTGAATATGTTGATA+TGG | 0.372412 | 1_1:+27150377 | Msa0016340:intron |
| TTTGGGGAAAACAGGAAATC+TGG | 0.375733 | 1_1:+27148935 | Msa0016340:CDS |
| ATTGATGACTTACCGAGCTT+TGG | 0.376430 | 1_1:-27146205 | None:intergenic |
| AATGTTCGGTTCTTGCAAAA+AGG | 0.380948 | 1_1:+27149127 | Msa0016340:CDS |
| GTTGGCACAATATCTGCTAA+TGG | 0.381948 | 1_1:+27147771 | Msa0016340:CDS |
| CCTTGGATGTTCATGGTTGA+TGG | 0.385525 | 1_1:+27150985 | Msa0016340:three_prime_UTR |
| TTTCTTATTTATTTGACATA+AGG | 0.387195 | 1_1:+27150698 | Msa0016340:three_prime_UTR |
| TTGGCACAATATCTGCTAAT+GGG | 0.388899 | 1_1:+27147772 | Msa0016340:CDS |
| TGCTCCTGCCATGCCTGGTA+TGG | 0.389510 | 1_1:+27150612 | Msa0016340:CDS |
| GCTCGTGCTTTGATGCTTAA+GGG | 0.392668 | 1_1:+27146694 | Msa0016340:CDS |
| TGCTAGGAGCAACGCTAATC+AGG | 0.394183 | 1_1:+27146501 | Msa0016340:CDS |
| GGCTGAAGTTGGTGAGAAAA+AGG | 0.395231 | 1_1:+27149690 | Msa0016340:CDS |
| CTCACCAACTTCAGCCTCAC+TGG | 0.395856 | 1_1:-27149683 | None:intergenic |
| TATGTTGATATGGTTAAATC+TGG | 0.397957 | 1_1:+27150387 | Msa0016340:CDS |
| AAAGTTGATCTTGAAATGTT+CGG | 0.399954 | 1_1:+27149113 | Msa0016340:CDS |
| CACTTCTGAAGAAATTGCTC+AGG | 0.402357 | 1_1:+27147649 | Msa0016340:CDS |
| GCCCTCCTCTACAGCTGCCT+TGG | 0.403912 | 1_1:-27149740 | None:intergenic |
| CCTGAGGCGAGGTATAAATA+TGG | 0.408456 | 1_1:+27147577 | Msa0016340:CDS |
| GGCTAAGAGCATTGAATTCA+AGG | 0.411181 | 1_1:+27147080 | Msa0016340:CDS |
| CTGTAAGAACAGCGAGATCC+TGG | 0.413061 | 1_1:-27148961 | None:intergenic |
| GTAGAGGGTGCTGTTGTTGT+TGG | 0.422645 | 1_1:+27150178 | Msa0016340:CDS |
| TCATCAACCTTGGATGTTCA+TGG | 0.428807 | 1_1:+27150978 | Msa0016340:three_prime_UTR |
| TCTAGAAGAAGCAGCTTCTA+GGG | 0.431953 | 1_1:-27146044 | None:intergenic |
| TTCTTTGCCAACTTTCTCCA+TGG | 0.436356 | 1_1:-27147826 | None:intergenic |
| AAATGAGAAAATTGAATTGA+AGG | 0.437715 | 1_1:-27146137 | None:intergenic |
| TCCTCAGCAACAATCAATAA+AGG | 0.438194 | 1_1:-27148728 | None:intergenic |
| AAGATTCATGCCAAGCTCTT+CGG | 0.445204 | 1_1:-27149087 | None:intergenic |
| GATGACTTACCGAGCTTTGG+AGG | 0.447733 | 1_1:-27146202 | None:intergenic |
| TATGATGTAGTTGAAACATT+TGG | 0.448454 | 1_1:+27150783 | Msa0016340:three_prime_UTR |
| GTACATGGTGTGGTTGGAAT+TGG | 0.451052 | 1_1:-27146160 | None:intergenic |
| TGCAACCTGCTTTACAAGAC+TGG | 0.457958 | 1_1:-27147124 | None:intergenic |
| ATCCTTCCGTAAATATTGCC+CGG | 0.471871 | 1_1:-27147520 | None:intergenic |
| AATGAGTTGGAAGTTGTTGA+AGG | 0.477205 | 1_1:+27148060 | Msa0016340:CDS |
| TGCAACTCCTCCAGAAAGCT+TGG | 0.478495 | 1_1:-27149542 | None:intergenic |
| GCGGTCCTAATCACCTTCAA+TGG | 0.479235 | 1_1:-27150420 | None:intergenic |
| CCGCCTTGGTTGACGCAGCC+AGG | 0.479827 | 1_1:+27150439 | Msa0016340:CDS |
| GCCCCTAAAGTGACAAAAGA+TGG | 0.479995 | 1_1:+27147048 | Msa0016340:CDS |
| ACTGTCATTCTTGATGGATC+TGG | 0.480375 | 1_1:+27149295 | Msa0016340:CDS |
| TGTTGCATAGATTGGAAGTA+GGG | 0.486042 | 1_1:+27146621 | Msa0016340:intron |
| GCTCCTGCCATGCCTGGTAT+GGG | 0.490109 | 1_1:+27150613 | Msa0016340:CDS |
| AAGTTGGTCCTTTCACAAGA+AGG | 0.490247 | 1_1:+27150894 | Msa0016340:three_prime_UTR |
| GCGGCATCGTAACCAAGATC+AGG | 0.490844 | 1_1:-27150223 | None:intergenic |
| TGGAATAATTGATCCATTGA+AGG | 0.491715 | 1_1:+27150407 | Msa0016340:CDS |
| ATGGAGAAAGTTGGCAAAGA+AGG | 0.492043 | 1_1:+27147828 | Msa0016340:CDS |
| TTCTGATCAAAATTGGCGGT+TGG | 0.494191 | 1_1:-27149902 | None:intergenic |
| CAAGACATTGCAAAATGAGT+TGG | 0.496144 | 1_1:+27148047 | Msa0016340:CDS |
| CTTAGTTACCTTAGGACCCA+TGG | 0.497517 | 1_1:-27146749 | None:intergenic |
| AAAGATGCTCCTGCCATGCC+TGG | 0.497620 | 1_1:+27150607 | Msa0016340:CDS |
| AAACAGGAAATCTGGTCTCC+AGG | 0.499170 | 1_1:+27148943 | Msa0016340:CDS |
| TGGTGCCAGTCTTGTAAAGC+AGG | 0.499843 | 1_1:+27147119 | Msa0016340:CDS |
| AATTGAGGAAAGATGTGAGC+AGG | 0.500933 | 1_1:+27149330 | Msa0016340:CDS |
| TAAAGTAACCATGGGTCCTA+AGG | 0.503309 | 1_1:+27146741 | Msa0016340:CDS |
| GCTGCTATGAAGACTTGGAT+TGG | 0.504752 | 1_1:+27150651 | Msa0016340:exon |
| GCCTCTGTTAATTTCCAAGT+TGG | 0.505067 | 1_1:+27150878 | Msa0016340:three_prime_UTR |
| CATGCCTGGTATGGGTGGTA+TGG | 0.507454 | 1_1:+27150621 | Msa0016340:CDS |
| AATCTCTCACTATGATTACA+TGG | 0.520442 | 1_1:-27150724 | None:intergenic |
| GGATGCAAATCAGTTGCAGC+TGG | 0.520565 | 1_1:+27147539 | Msa0016340:CDS |
| CAAGGAACACTGACCTTTGG+CGG | 0.520960 | 1_1:-27150242 | None:intergenic |
| ATTGATTGTTGCTGAGGATG+TGG | 0.521979 | 1_1:+27148733 | Msa0016340:CDS |
| TTTGCTCAATCACCACGTTA+CGG | 0.522654 | 1_1:-27147017 | None:intergenic |
| TGATGAAGCAAAACGGTACA+TGG | 0.524897 | 1_1:-27146175 | None:intergenic |
| ACTTGATTTATGAAGATTGG+AGG | 0.528207 | 1_1:+27149658 | Msa0016340:intron |
| TATTAGCTGCTATGAAGACT+TGG | 0.528729 | 1_1:+27150646 | Msa0016340:exon |
| GAGAGATTAAAGCTGTAGGT+AGG | 0.529683 | 1_1:+27150739 | Msa0016340:three_prime_UTR |
| TAAAACAACCTTCTTGTGAA+AGG | 0.530385 | 1_1:-27150902 | None:intergenic |
| GTAGAGGAGGGCATAGTACC+TGG | 0.531895 | 1_1:+27149751 | Msa0016340:CDS |
| TATTTGATGCTCATCAACCT+TGG | 0.534231 | 1_1:+27150968 | Msa0016340:three_prime_UTR |
| CTTGTGCTACAGTTCTTACC+CGG | 0.535613 | 1_1:+27147501 | Msa0016340:CDS |
| GAAGGTGATTAGGACCGCCT+TGG | 0.537650 | 1_1:+27150425 | Msa0016340:CDS |
| ACCATCACCAGCCACATCAT+TGG | 0.538003 | 1_1:-27147154 | None:intergenic |
| ACCTTTATTGATTGTTGCTG+AGG | 0.539398 | 1_1:+27148727 | Msa0016340:CDS |
| ATTCTAAATAAGCTTCGTGC+TGG | 0.540824 | 1_1:+27148779 | Msa0016340:CDS |
| TGCAACCAAGGCAGCTGTAG+AGG | 0.541405 | 1_1:+27149735 | Msa0016340:CDS |
| CAGCTTATCACCGAAGAGCT+TGG | 0.542247 | 1_1:+27149077 | Msa0016340:intron |
| ATTTAGAATAAGAGTTGCAA+GGG | 0.543816 | 1_1:-27148765 | None:intergenic |
| GCAAAAGCCATGGAGAAAGT+TGG | 0.544162 | 1_1:+27147819 | Msa0016340:CDS |
| GCATCAAATGCTGGAGTAGA+GGG | 0.546345 | 1_1:+27150163 | Msa0016340:CDS |
| ATTGTTTGCAAGAGTAATTG+TGG | 0.548762 | 1_1:+27151020 | Msa0016340:three_prime_UTR |
| GTGTTGCATAGATTGGAAGT+AGG | 0.549231 | 1_1:+27146620 | Msa0016340:intron |
| TATTTAGAATAAGAGTTGCA+AGG | 0.553538 | 1_1:-27148766 | None:intergenic |
| CATACAATTGCATCAAATGC+TGG | 0.554740 | 1_1:+27150154 | Msa0016340:CDS |
| TGCATCAAATGCTGGAGTAG+AGG | 0.557397 | 1_1:+27150162 | Msa0016340:CDS |
| TTCTTGTGAAAGGACCAACT+TGG | 0.557473 | 1_1:-27150892 | None:intergenic |
| TTTAGTTGACAGTTTATGAA+GGG | 0.558069 | 1_1:-27150850 | None:intergenic |
| TCCTTCCGTAAATATTGCCC+GGG | 0.565365 | 1_1:-27147519 | None:intergenic |
| CCACCCATACCAGGCATGGC+AGG | 0.565885 | 1_1:-27150616 | None:intergenic |
| GTGGTGATTGAGCAAAGCTT+TGG | 0.566454 | 1_1:+27147024 | Msa0016340:CDS |
| AGATTGGAAGTAGGGTGGCA+TGG | 0.567170 | 1_1:+27146629 | Msa0016340:intron |
| CATCACTTGCCTCCAAAGCT+CGG | 0.570155 | 1_1:+27146193 | Msa0016340:CDS |
| CCTGCCATGCCTGGTATGGG+TGG | 0.574287 | 1_1:+27150616 | Msa0016340:CDS |
| TTCTCGTGGATTATAATGAG+AGG | 0.575624 | 1_1:-27148558 | None:intergenic |
| ACCAATGATGTGGCTGGTGA+TGG | 0.577314 | 1_1:+27147153 | Msa0016340:CDS |
| TGAGTTAATTGCAAAAGCCA+TGG | 0.577983 | 1_1:+27147809 | Msa0016340:CDS |
| CCATATTTATACCTCGCCTC+AGG | 0.579496 | 1_1:-27147577 | None:intergenic |
| TATCTTCTGATCAAAATTGG+CGG | 0.579635 | 1_1:-27149906 | None:intergenic |
| TGGTGATAAGAAATCAATTG+AGG | 0.584040 | 1_1:+27149315 | Msa0016340:CDS |
| TAGTGAGAGATTAAAGCTGT+AGG | 0.584980 | 1_1:+27150735 | Msa0016340:three_prime_UTR |
| AACCAAGGCAGCTGTAGAGG+AGG | 0.586821 | 1_1:+27149738 | Msa0016340:CDS |
| CTTGGTTACGATGCCGCCAA+AGG | 0.591473 | 1_1:+27150229 | Msa0016340:CDS |
| GTATGTGCGATCAAAGCCCC+TGG | 0.591861 | 1_1:+27148911 | Msa0016340:CDS |
| ATAAACTGTCAACTAAAAGA+CGG | 0.593926 | 1_1:+27150856 | Msa0016340:three_prime_UTR |
| ACCCGGGCAATATTTACGGA+AGG | 0.599417 | 1_1:+27147518 | Msa0016340:CDS |
| AGGCAAGTGATGAAGCAAAA+CGG | 0.600903 | 1_1:-27146182 | None:intergenic |
| AAAACGGTACATGGTGTGGT+TGG | 0.603014 | 1_1:-27146166 | None:intergenic |
| CCATCAACCATGAACATCCA+AGG | 0.604890 | 1_1:-27150985 | None:intergenic |
| TGAGGCAGTTAAAGTAACCA+TGG | 0.610661 | 1_1:+27146732 | Msa0016340:CDS |
| TAGTCCATACCACCCATACC+AGG | 0.615608 | 1_1:-27150625 | None:intergenic |
| GGGTGTTGAAGAACTTGCTG+AGG | 0.617007 | 1_1:+27146714 | Msa0016340:CDS |
| GGTAAGAACTGTAGCACAAG+TGG | 0.617248 | 1_1:-27147498 | None:intergenic |
| CTACCTGGCTGCGTCAACCA+AGG | 0.618790 | 1_1:-27150442 | None:intergenic |
| GGAGCCAGTGAGGCTGAAGT+TGG | 0.619289 | 1_1:+27149679 | Msa0016340:CDS |
| ACCAAGGCAGCTGTAGAGGA+GGG | 0.620345 | 1_1:+27149739 | Msa0016340:CDS |
| TGGCACAATATCTGCTAATG+GGG | 0.620505 | 1_1:+27147773 | Msa0016340:CDS |
| TTTGATGCAATTGTATGCAC+AGG | 0.621753 | 1_1:-27150148 | None:intergenic |
| GAGGCAGTTAAAGTAACCAT+GGG | 0.626223 | 1_1:+27146733 | Msa0016340:CDS |
| AATGCTACCAATGATGTGGC+TGG | 0.626483 | 1_1:+27147147 | Msa0016340:CDS |
| AATTCATCTACAGATTAGGT+CGG | 0.630754 | 1_1:+27149465 | Msa0016340:intron |
| TTTGTTACCACAGGAACTCG+AGG | 0.635926 | 1_1:+27148533 | Msa0016340:intron |
| AGAGATCAAATTTGGCGTGG+AGG | 0.637900 | 1_1:+27146672 | Msa0016340:CDS |
| AGATGCCTTAAATGCAACCA+AGG | 0.645500 | 1_1:+27149723 | Msa0016340:CDS |
| AGATTGGCCAAGCTTTCTGG+AGG | 0.646303 | 1_1:+27149535 | Msa0016340:CDS |
| TGCAGCTGGAATGAATGCAA+TGG | 0.646496 | 1_1:+27147553 | Msa0016340:CDS |
| CATACCACCCATACCAGGCA+TGG | 0.647057 | 1_1:-27150620 | None:intergenic |
| AATACGGAGAAATGTAGCCT+CGG | 0.653427 | 1_1:-27148095 | None:intergenic |
| AAGCAAAACGGTACATGGTG+TGG | 0.656782 | 1_1:-27146170 | None:intergenic |
| TTGTGCTACAGTTCTTACCC+GGG | 0.659855 | 1_1:+27147502 | Msa0016340:CDS |
| TATGAAGACTTGGATTGGAG+TGG | 0.660096 | 1_1:+27150656 | Msa0016340:three_prime_UTR |
| TGCATAGATTGGAAGTAGGG+TGG | 0.661029 | 1_1:+27146624 | Msa0016340:intron |
| CAAAGAGATCAAATTTGGCG+TGG | 0.667217 | 1_1:+27146669 | Msa0016340:CDS |
| AATGCAATGGACCTGAGGCG+AGG | 0.674402 | 1_1:+27147566 | Msa0016340:CDS |
| GAATGAATGCAATGGACCTG+AGG | 0.678991 | 1_1:+27147561 | Msa0016340:CDS |
| TGCAAATGCTACCAATGATG+TGG | 0.685010 | 1_1:+27147143 | Msa0016340:CDS |
| GATCTCGCTGTTCTTACAGG+AGG | 0.694554 | 1_1:+27148965 | Msa0016340:CDS |
| GAAGATTGGAGGAGCCAGTG+AGG | 0.699698 | 1_1:+27149669 | Msa0016340:intron |
| TAGCACTTCAGATTATGACA+AGG | 0.700368 | 1_1:+27149498 | Msa0016340:CDS |
| CCTGGCTGCGTCAACCAAGG+CGG | 0.705423 | 1_1:-27150439 | None:intergenic |
| GAAGGAATGAAGCTTGACCG+AGG | 0.708985 | 1_1:+27148078 | Msa0016340:CDS |
| ACCAACTTGGAAATTAACAG+AGG | 0.716191 | 1_1:-27150879 | None:intergenic |
| GACAAAAGATGGAGTCACTG+TGG | 0.727240 | 1_1:+27147059 | Msa0016340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAAATTAAATCTAAATA+CGG | + | chr1_1:27147330-27147349 | Msa0016340:intron | 10.0% |
| !!! | TTTTTTGAAATTATTCATCT+GGG | + | chr1_1:27146293-27146312 | Msa0016340:intron | 15.0% |
| !! | TTAGAATCATTCAATATAAT+TGG | - | chr1_1:27146450-27146469 | None:intergenic | 15.0% |
| !! | TAATCATAATGTAATTAAAG+GGG | - | chr1_1:27148353-27148372 | None:intergenic | 15.0% |
| !! | GTAATCATAATGTAATTAAA+GGG | - | chr1_1:27148354-27148373 | None:intergenic | 15.0% |
| !! | TGTAATCATAATGTAATTAA+AGG | - | chr1_1:27148355-27148374 | None:intergenic | 15.0% |
| !! | ATTAAGAAAATTAGTTAAGT+AGG | - | chr1_1:27149247-27149266 | None:intergenic | 15.0% |
| !!! | TTTCTTATTTATTTGACATA+AGG | + | chr1_1:27150698-27150717 | Msa0016340:three_prime_UTR | 15.0% |
| !!! | ATCAAATAAAGATTTTAACT+TGG | - | chr1_1:27150956-27150975 | None:intergenic | 15.0% |
| !! | AAATGAGAAAATTGAATTGA+AGG | - | chr1_1:27146140-27146159 | None:intergenic | 20.0% |
| !! | GGATAATTGAAACAAAAAAA+AGG | - | chr1_1:27146239-27146258 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAAATTATTCATC+TGG | + | chr1_1:27146292-27146311 | Msa0016340:intron | 20.0% |
| !! | GTTGTTAAAATGATTGATAA+TGG | + | chr1_1:27146318-27146337 | Msa0016340:intron | 20.0% |
| !!! | AATGTAAATTTTTGTGCTTT+TGG | + | chr1_1:27146469-27146488 | Msa0016340:intron | 20.0% |
| !! | TTATTCAATCATATTTCAGA+GGG | + | chr1_1:27146886-27146905 | Msa0016340:intron | 20.0% |
| !! | CATCAACAACAATTAATAAT+GGG | - | chr1_1:27146973-27146992 | None:intergenic | 20.0% |
| !! | TCATCAACAACAATTAATAA+TGG | - | chr1_1:27146974-27146993 | None:intergenic | 20.0% |
| !! | TTCAAAAATATAATCAACCA+TGG | - | chr1_1:27147192-27147211 | None:intergenic | 20.0% |
| !!! | TTAAATTTTCACAGTTGATT+CGG | + | chr1_1:27147214-27147233 | Msa0016340:intron | 20.0% |
| !!! | TTCAAATTTTTAGAGCTAAT+AGG | + | chr1_1:27147679-27147698 | Msa0016340:intron | 20.0% |
| !!! | ATTTTTAATTTTGCAATGCT+AGG | + | chr1_1:27147749-27147768 | Msa0016340:intron | 20.0% |
| !!! | TTATATGTGTTTTTTTGACT+GGG | + | chr1_1:27147913-27147932 | Msa0016340:intron | 20.0% |
| !!! | TTGTTTTTTTCTCATTACTT+AGG | + | chr1_1:27148889-27148908 | Msa0016340:intron | 20.0% |
| !! | ATGGTAAAATGAAATCTAAT+AGG | - | chr1_1:27149369-27149388 | None:intergenic | 20.0% |
| !! | ATACATTTATCAGATATGTT+TGG | - | chr1_1:27149823-27149842 | None:intergenic | 20.0% |
| !! | AGGATATAAAAAATTTGCAT+TGG | + | chr1_1:27150463-27150482 | Msa0016340:intron | 20.0% |
| !!! | CTTAATATTTTGGAATGAAT+TGG | - | chr1_1:27150822-27150841 | None:intergenic | 20.0% |
| !! | CAATTCATTCCAAAATATTA+AGG | + | chr1_1:27150820-27150839 | Msa0016340:three_prime_UTR | 20.0% |
| !!! | TTAATTTGTGTTGCATAGAT+TGG | + | chr1_1:27146613-27146632 | Msa0016340:intron | 25.0% |
| ! | GGTTAATGTAGTAGAATAAA+AGG | + | chr1_1:27146818-27146837 | Msa0016340:intron | 25.0% |
| ! | CTTATTCAATCATATTTCAG+AGG | + | chr1_1:27146885-27146904 | Msa0016340:intron | 25.0% |
| !!! | ATTACATTTCTCCTGTTTTT+AGG | + | chr1_1:27146993-27147012 | Msa0016340:intron | 25.0% |
| !!! | TTACATTTCTCCTGTTTTTA+GGG | + | chr1_1:27146994-27147013 | Msa0016340:intron | 25.0% |
| ! | AAGGATAAAGTCAAGAATAT+TGG | + | chr1_1:27147099-27147118 | Msa0016340:CDS | 25.0% |
| ! | AAATATATACCAAAAGTCCT+TGG | - | chr1_1:27147275-27147294 | None:intergenic | 25.0% |
| !!! | TAGAGATTTGTTTTATTCCT+AGG | + | chr1_1:27147295-27147314 | Msa0016340:intron | 25.0% |
| !! | ACATTTTACATGCTGATATT+GGG | + | chr1_1:27147421-27147440 | Msa0016340:intron | 25.0% |
| ! | AATTTATACCACTCATTAGT+TGG | - | chr1_1:27147468-27147487 | None:intergenic | 25.0% |
| !! | CTAATGAGTGGTATAAATTT+TGG | + | chr1_1:27147469-27147488 | Msa0016340:intron | 25.0% |
| ! | GCAAGAATTATCATTAATCT+TGG | + | chr1_1:27147890-27147909 | Msa0016340:intron | 25.0% |
| !!! | GTTATATGTGTTTTTTTGAC+TGG | + | chr1_1:27147912-27147931 | Msa0016340:intron | 25.0% |
| ! | ATAAGTGGGAAAAAAAGAAA+AGG | - | chr1_1:27147974-27147993 | None:intergenic | 25.0% |
| !!! | TTCTGGTTTGTTATGAAATA+CGG | - | chr1_1:27148114-27148133 | None:intergenic | 25.0% |
| ! | ATTAAGAACATACACATTTC+TGG | - | chr1_1:27148140-27148159 | None:intergenic | 25.0% |
| !! | ATTTAGAATAAGAGTTGCAA+GGG | - | chr1_1:27148768-27148787 | None:intergenic | 25.0% |
| !! | TATTTAGAATAAGAGTTGCA+AGG | - | chr1_1:27148769-27148788 | None:intergenic | 25.0% |
| ! | AAAAAAGTAAACCTACAGAT+AGG | - | chr1_1:27148822-27148841 | None:intergenic | 25.0% |
| !! | AAAGTTGATCTTGAAATGTT+CGG | + | chr1_1:27149113-27149132 | Msa0016340:CDS | 25.0% |
| ! | TGAAAATTCATCTACAGATT+AGG | + | chr1_1:27149461-27149480 | Msa0016340:intron | 25.0% |
| ! | TTATGACAAGGAAAAATTAC+AGG | + | chr1_1:27149510-27149529 | Msa0016340:CDS | 25.0% |
| ! | AAAAACTTGGAATGCTTAAT+AGG | - | chr1_1:27149621-27149640 | None:intergenic | 25.0% |
| ! | ATCTTCATAAATCAAGTTTC+AGG | - | chr1_1:27149655-27149674 | None:intergenic | 25.0% |
| ! | GAAACTTGATTTATGAAGAT+TGG | + | chr1_1:27149655-27149674 | Msa0016340:intron | 25.0% |
| ! | TATCATGCTAATAATTTACC+AGG | - | chr1_1:27149772-27149791 | None:intergenic | 25.0% |
| !!! | ATAAATGTATGTTTTTGCAC+AGG | + | chr1_1:27149833-27149852 | Msa0016340:intron | 25.0% |
| !!! | TTAAAGCGTTTTGGATAATT+TGG | - | chr1_1:27149937-27149956 | None:intergenic | 25.0% |
| ! | AATTATCCAAAACGCTTTAA+AGG | + | chr1_1:27149937-27149956 | Msa0016340:CDS | 25.0% |
| ! | ATTAGGTGAATATGTTGATA+TGG | + | chr1_1:27150377-27150396 | Msa0016340:intron | 25.0% |
| ! | TATGTTGATATGGTTAAATC+TGG | + | chr1_1:27150387-27150406 | Msa0016340:CDS | 25.0% |
| !!! | CAAATTTTTTATATCCTACC+TGG | - | chr1_1:27150460-27150479 | None:intergenic | 25.0% |
| ! | ATGTTGTATGTTATATATGC+AGG | + | chr1_1:27150492-27150511 | Msa0016340:intron | 25.0% |
| ! | TATGATGTAGTTGAAACATT+TGG | + | chr1_1:27150783-27150802 | Msa0016340:three_prime_UTR | 25.0% |
| !! | GGAACAATTCCTTAATATTT+TGG | - | chr1_1:27150832-27150851 | None:intergenic | 25.0% |
| ! | TTTAGTTGACAGTTTATGAA+GGG | - | chr1_1:27150853-27150872 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGACAGTTTATGA+AGG | - | chr1_1:27150854-27150873 | None:intergenic | 25.0% |
| ! | ATAAACTGTCAACTAAAAGA+CGG | + | chr1_1:27150856-27150875 | Msa0016340:three_prime_UTR | 25.0% |
| TAGGTAATCATGAATCAACA+TGG | - | chr1_1:27146401-27146420 | None:intergenic | 30.0% | |
| ! | GAGATATATAATGATGATGC+TGG | + | chr1_1:27146840-27146859 | Msa0016340:intron | 30.0% |
| ! | CACATTTTACATGCTGATAT+TGG | + | chr1_1:27147420-27147439 | Msa0016340:intron | 30.0% |
| ! | TTAATTTTGCAATGCTAGGT+TGG | + | chr1_1:27147753-27147772 | Msa0016340:intron | 30.0% |
| ! | ATCATGTTGCATCTCAATTT+TGG | + | chr1_1:27148256-27148275 | Msa0016340:intron | 30.0% |
| TATTTATCTGTATCGTTGTC+AGG | + | chr1_1:27148433-27148452 | Msa0016340:intron | 30.0% | |
| !! | TATTTGAGATTTTCTTCTCG+TGG | - | chr1_1:27148575-27148594 | None:intergenic | 30.0% |
| !! | AGTATTAGAGTTAGCTTTGA+AGG | + | chr1_1:27148611-27148630 | Msa0016340:CDS | 30.0% |
| TGGTGATAAGAAATCAATTG+AGG | + | chr1_1:27149315-27149334 | Msa0016340:CDS | 30.0% | |
| AATTCATCTACAGATTAGGT+CGG | + | chr1_1:27149465-27149484 | Msa0016340:intron | 30.0% | |
| GGAAAAATTACAGGAAAGAT+TGG | + | chr1_1:27149519-27149538 | Msa0016340:CDS | 30.0% | |
| GGTGTTAGTTATGAAAAACT+TGG | - | chr1_1:27149634-27149653 | None:intergenic | 30.0% | |
| ACTTGATTTATGAAGATTGG+AGG | + | chr1_1:27149658-27149677 | Msa0016340:intron | 30.0% | |
| CATTTATCAGATATGTTTGG+AGG | - | chr1_1:27149820-27149839 | None:intergenic | 30.0% | |
| TATCTTCTGATCAAAATTGG+CGG | - | chr1_1:27149909-27149928 | None:intergenic | 30.0% | |
| ACCTATCTTCTGATCAAAAT+TGG | - | chr1_1:27149912-27149931 | None:intergenic | 30.0% | |
| CAGATTAAACTCTATATTGC+AGG | - | chr1_1:27150044-27150063 | None:intergenic | 30.0% | |
| ! | AATCTGTCTTTTAGACAGTA+TGG | + | chr1_1:27150058-27150077 | Msa0016340:intron | 30.0% |
| !! | TGTTGTTGTTGGTAAACTTT+TGG | + | chr1_1:27150189-27150208 | Msa0016340:CDS | 30.0% |
| AGACAAGGAAAAAGAAAACA+AGG | - | chr1_1:27150263-27150282 | None:intergenic | 30.0% | |
| !!! | CTTTTTCCTTGTCTTGTTTA+AGG | + | chr1_1:27150269-27150288 | Msa0016340:intron | 30.0% |
| !! | TTGTCAACTATTTTTCTTGC+TGG | + | chr1_1:27150348-27150367 | Msa0016340:intron | 30.0% |
| !! | TTTCTTGCTGGTTTGTAATT+AGG | + | chr1_1:27150360-27150379 | Msa0016340:intron | 30.0% |
| TGGAATAATTGATCCATTGA+AGG | + | chr1_1:27150407-27150426 | Msa0016340:CDS | 30.0% | |
| AATCTCTCACTATGATTACA+TGG | - | chr1_1:27150727-27150746 | None:intergenic | 30.0% | |
| TAAAACAACCTTCTTGTGAA+AGG | - | chr1_1:27150905-27150924 | None:intergenic | 30.0% | |
| ATTGTTTGCAAGAGTAATTG+TGG | + | chr1_1:27151020-27151039 | Msa0016340:three_prime_UTR | 30.0% | |
| !!! | GAGTTGTTTTTGAAGGGAAA+GGG | - | chr1_1:27146075-27146094 | None:intergenic | 35.0% |
| !!! | AGAGTTGTTTTTGAAGGGAA+AGG | - | chr1_1:27146076-27146095 | None:intergenic | 35.0% |
| ! | ATCCTTTTACACACTTCAGA+TGG | + | chr1_1:27146255-27146274 | Msa0016340:intron | 35.0% |
| ATCACAAAGAATACAGACGT+AGG | - | chr1_1:27146420-27146439 | None:intergenic | 35.0% | |
| ACGTCTGTATTCTTTGTGAT+TGG | + | chr1_1:27146420-27146439 | Msa0016340:intron | 35.0% | |
| TGTTGCATAGATTGGAAGTA+GGG | + | chr1_1:27146621-27146640 | Msa0016340:intron | 35.0% | |
| ! | AAGGTTTGCTTAGTTACCTT+AGG | - | chr1_1:27146760-27146779 | None:intergenic | 35.0% |
| TTAATATCTTCCAGTCCTAC+AGG | - | chr1_1:27146935-27146954 | None:intergenic | 35.0% | |
| !!! | TCCATCTTTTGTCACTTTAG+GGG | - | chr1_1:27147052-27147071 | None:intergenic | 35.0% |
| !!! | CTCCATCTTTTGTCACTTTA+GGG | - | chr1_1:27147053-27147072 | None:intergenic | 35.0% |
| !!! | ACTCCATCTTTTGTCACTTT+AGG | - | chr1_1:27147054-27147073 | None:intergenic | 35.0% |
| !! | ATGGTAAGCTGTTTTATCCA+TGG | + | chr1_1:27147172-27147191 | Msa0016340:intron | 35.0% |
| !!! | GTTGATTCGGTTTTATTCCT+AGG | + | chr1_1:27147227-27147246 | Msa0016340:intron | 35.0% |
| !!! | GTTGATTCGGTTTTATTCCA+AGG | + | chr1_1:27147255-27147274 | Msa0016340:intron | 35.0% |
| !!! | GGTTTTATTCCAAGGACTTT+TGG | + | chr1_1:27147263-27147282 | Msa0016340:intron | 35.0% |
| !!! | TTTGTTTTATTCCTAGGACG+TGG | + | chr1_1:27147301-27147320 | Msa0016340:intron | 35.0% |
| TCTAATATATACCACGTCCT+AGG | - | chr1_1:27147315-27147334 | None:intergenic | 35.0% | |
| !!! | TACATGCTGGTTTTATTCCT+AGG | + | chr1_1:27147361-27147380 | Msa0016340:intron | 35.0% |
| TCTAATATATACCACGTCCT+AGG | - | chr1_1:27147315-27147334 | None:intergenic | 35.0% | |
| !! | TGAGTGGTATAAATTTTGGC+AGG | + | chr1_1:27147473-27147492 | Msa0016340:intron | 35.0% |
| TAATAGGCATATTAGCCACA+AGG | + | chr1_1:27147695-27147714 | Msa0016340:intron | 35.0% | |
| TTGGCACAATATCTGCTAAT+GGG | + | chr1_1:27147772-27147791 | Msa0016340:CDS | 35.0% | |
| TGAGTTAATTGCAAAAGCCA+TGG | + | chr1_1:27147809-27147828 | Msa0016340:CDS | 35.0% | |
| CAAGACATTGCAAAATGAGT+TGG | + | chr1_1:27148047-27148066 | Msa0016340:CDS | 35.0% | |
| ! | AATGAGTTGGAAGTTGTTGA+AGG | + | chr1_1:27148060-27148079 | Msa0016340:CDS | 35.0% |
| !! | ATACACATTTCTGGTTCTTC+TGG | - | chr1_1:27148131-27148150 | None:intergenic | 35.0% |
| TTTCTAATGCTGCTATGTAG+AGG | - | chr1_1:27148168-27148187 | None:intergenic | 35.0% | |
| TTATCTATCCACGATAGTAG+TGG | + | chr1_1:27148230-27148249 | Msa0016340:intron | 35.0% | |
| AAAGAGCAAAACACAATGAC+TGG | - | chr1_1:27148288-27148307 | None:intergenic | 35.0% | |
| ! | AGTCATTGTGTTTTGCTCTT+TGG | + | chr1_1:27148287-27148306 | Msa0016340:intron | 35.0% |
| GTGGTAACAAATAGATGTCA+TGG | - | chr1_1:27148524-27148543 | None:intergenic | 35.0% | |
| ! | TGACATCTATTTGTTACCAC+AGG | + | chr1_1:27148524-27148543 | Msa0016340:intron | 35.0% |
| ! | TTCTCGTGGATTATAATGAG+AGG | - | chr1_1:27148561-27148580 | None:intergenic | 35.0% |
| ! | ACCTTTATTGATTGTTGCTG+AGG | + | chr1_1:27148727-27148746 | Msa0016340:CDS | 35.0% |
| TCCTCAGCAACAATCAATAA+AGG | - | chr1_1:27148731-27148750 | None:intergenic | 35.0% | |
| ATTCTAAATAAGCTTCGTGC+TGG | + | chr1_1:27148779-27148798 | Msa0016340:CDS | 35.0% | |
| !! | GGTTTGTTTTTCCTATCTGT+AGG | + | chr1_1:27148808-27148827 | Msa0016340:intron | 35.0% |
| AATGTTCGGTTCTTGCAAAA+AGG | + | chr1_1:27149127-27149146 | Msa0016340:CDS | 35.0% | |
| AAGAATGACAGTGTCATCTT+TGG | - | chr1_1:27149287-27149306 | None:intergenic | 35.0% | |
| TTACCATTGTTAGCGTATTC+TGG | + | chr1_1:27149382-27149401 | Msa0016340:intron | 35.0% | |
| AAACCAGAATACGCTAACAA+TGG | - | chr1_1:27149388-27149407 | None:intergenic | 35.0% | |
| TAGCACTTCAGATTATGACA+AGG | + | chr1_1:27149498-27149517 | Msa0016340:CDS | 35.0% | |
| !! | ATAAAAAGCATCAGCAAGCA+AGG | - | chr1_1:27149596-27149615 | None:intergenic | 35.0% |
| !! | AATGTATGTTTTTGCACAGG+TGG | + | chr1_1:27149836-27149855 | Msa0016340:intron | 35.0% |
| !! | GCCAATTTTGATCAGAAGAT+AGG | + | chr1_1:27149908-27149927 | Msa0016340:CDS | 35.0% |
| !!! | AACACACCTTTAAAGCGTTT+TGG | - | chr1_1:27149946-27149965 | None:intergenic | 35.0% |
| TTTGATGCAATTGTATGCAC+AGG | - | chr1_1:27150151-27150170 | None:intergenic | 35.0% | |
| CATACAATTGCATCAAATGC+TGG | + | chr1_1:27150154-27150173 | Msa0016340:CDS | 35.0% | |
| !!! | TGTTGGTAAACTTTTGGAAC+AGG | + | chr1_1:27150195-27150214 | Msa0016340:CDS | 35.0% |
| GAAACTCCTTAAACAAGACA+AGG | - | chr1_1:27150278-27150297 | None:intergenic | 35.0% | |
| TTGATCCATTGAAGGTGATT+AGG | + | chr1_1:27150415-27150434 | Msa0016340:CDS | 35.0% | |
| AAAAAAGCAGCAAGTTAGTC+AGG | - | chr1_1:27150521-27150540 | None:intergenic | 35.0% | |
| !! | GGAGCATCTTTATCTTCTTT+TGG | - | chr1_1:27150598-27150617 | None:intergenic | 35.0% |
| TATTAGCTGCTATGAAGACT+TGG | + | chr1_1:27150646-27150665 | Msa0016340:exon | 35.0% | |
| TAGTGAGAGATTAAAGCTGT+AGG | + | chr1_1:27150735-27150754 | Msa0016340:three_prime_UTR | 35.0% | |
| ACCAACTTGGAAATTAACAG+AGG | - | chr1_1:27150882-27150901 | None:intergenic | 35.0% | |
| TATTTGATGCTCATCAACCT+TGG | + | chr1_1:27150968-27150987 | Msa0016340:three_prime_UTR | 35.0% | |
| !!! | CTTCTAGGGTTTAGGGTTTT+TGG | - | chr1_1:27146033-27146052 | None:intergenic | 40.0% |
| TCTAGAAGAAGCAGCTTCTA+GGG | - | chr1_1:27146047-27146066 | None:intergenic | 40.0% | |
| !!! | GCTGCAGAGTTGTTTTTGAA+GGG | - | chr1_1:27146081-27146100 | None:intergenic | 40.0% |
| TGATGAAGCAAAACGGTACA+TGG | - | chr1_1:27146178-27146197 | None:intergenic | 40.0% | |
| AGGCAAGTGATGAAGCAAAA+CGG | - | chr1_1:27146185-27146204 | None:intergenic | 40.0% | |
| ! | ATTGATGACTTACCGAGCTT+TGG | - | chr1_1:27146208-27146227 | None:intergenic | 40.0% |
| AAAGCTCGGTAAGTCATCAA+TGG | + | chr1_1:27146207-27146226 | Msa0016340:intron | 40.0% | |
| ! | AGCCATCTGAAGTGTGTAAA+AGG | - | chr1_1:27146260-27146279 | None:intergenic | 40.0% |
| ! | TTGAGCATTGTGCATTGAGA+TGG | + | chr1_1:27146367-27146386 | Msa0016340:intron | 40.0% |
| ! | CTTTTGGATGCAGAATTGCT+AGG | + | chr1_1:27146485-27146504 | Msa0016340:intron | 40.0% |
| GTGTTGCATAGATTGGAAGT+AGG | + | chr1_1:27146620-27146639 | Msa0016340:intron | 40.0% | |
| GCTGCCAAAGAGATCAAATT+TGG | + | chr1_1:27146664-27146683 | Msa0016340:CDS | 40.0% | |
| CACGCCAAATTTGATCTCTT+TGG | - | chr1_1:27146671-27146690 | None:intergenic | 40.0% | |
| CAAAGAGATCAAATTTGGCG+TGG | + | chr1_1:27146669-27146688 | Msa0016340:CDS | 40.0% | |
| TGAGGCAGTTAAAGTAACCA+TGG | + | chr1_1:27146732-27146751 | Msa0016340:CDS | 40.0% | |
| GAGGCAGTTAAAGTAACCAT+GGG | + | chr1_1:27146733-27146752 | Msa0016340:CDS | 40.0% | |
| TAAAGTAACCATGGGTCCTA+AGG | + | chr1_1:27146741-27146760 | Msa0016340:CDS | 40.0% | |
| TTTGCTCAATCACCACGTTA+CGG | - | chr1_1:27147020-27147039 | None:intergenic | 40.0% | |
| !! | GGCTAAGAGCATTGAATTCA+AGG | + | chr1_1:27147080-27147099 | Msa0016340:CDS | 40.0% |
| TGCAAATGCTACCAATGATG+TGG | + | chr1_1:27147143-27147162 | Msa0016340:CDS | 40.0% | |
| ! | TACGGTCACATTTTACATGC+TGG | + | chr1_1:27147348-27147367 | Msa0016340:intron | 40.0% |
| TGTTGTGACCAACTAATGAG+TGG | + | chr1_1:27147457-27147476 | Msa0016340:intron | 40.0% | |
| TCTTACCCGGGCAATATTTA+CGG | + | chr1_1:27147514-27147533 | Msa0016340:CDS | 40.0% | |
| ATCCTTCCGTAAATATTGCC+CGG | - | chr1_1:27147523-27147542 | None:intergenic | 40.0% | |
| ! | CACTTCTGAAGAAATTGCTC+AGG | + | chr1_1:27147649-27147668 | Msa0016340:CDS | 40.0% |
| GTTGGCACAATATCTGCTAA+TGG | + | chr1_1:27147771-27147790 | Msa0016340:CDS | 40.0% | |
| TGGCACAATATCTGCTAATG+GGG | + | chr1_1:27147773-27147792 | Msa0016340:CDS | 40.0% | |
| GCTAATGGGGATAGAGAAAT+TGG | + | chr1_1:27147786-27147805 | Msa0016340:CDS | 40.0% | |
| TTCTTTGCCAACTTTCTCCA+TGG | - | chr1_1:27147829-27147848 | None:intergenic | 40.0% | |
| ATGGAGAAAGTTGGCAAAGA+AGG | + | chr1_1:27147828-27147847 | Msa0016340:CDS | 40.0% | |
| ACGGCAAGATGACAATAAGT+GGG | - | chr1_1:27147988-27148007 | None:intergenic | 40.0% | |
| AATACGGAGAAATGTAGCCT+CGG | - | chr1_1:27148098-27148117 | None:intergenic | 40.0% | |
| ACAAAAGTCGCAACTACGAT+AGG | - | chr1_1:27148326-27148345 | None:intergenic | 40.0% | |
| TACAGACTCATGACAATGCA+TGG | - | chr1_1:27148481-27148500 | None:intergenic | 40.0% | |
| ATTGATTGTTGCTGAGGATG+TGG | + | chr1_1:27148733-27148752 | Msa0016340:CDS | 40.0% | |
| TAAGCTTCGTGCTGGAATTA+AGG | + | chr1_1:27148787-27148806 | Msa0016340:CDS | 40.0% | |
| TTTGGGGAAAACAGGAAATC+TGG | + | chr1_1:27148935-27148954 | Msa0016340:CDS | 40.0% | |
| AAGATTCATGCCAAGCTCTT+CGG | - | chr1_1:27149090-27149109 | None:intergenic | 40.0% | |
| CCAAAACTGAGCAATCATTG+AGG | - | chr1_1:27149211-27149230 | None:intergenic | 40.0% | |
| ! | CCTCAATGATTGCTCAGTTT+TGG | + | chr1_1:27149208-27149227 | Msa0016340:intron | 40.0% |
| GATGACACTGTCATTCTTGA+TGG | + | chr1_1:27149289-27149308 | Msa0016340:CDS | 40.0% | |
| ! | ACTGTCATTCTTGATGGATC+TGG | + | chr1_1:27149295-27149314 | Msa0016340:CDS | 40.0% |
| AATTGAGGAAAGATGTGAGC+AGG | + | chr1_1:27149330-27149349 | Msa0016340:CDS | 40.0% | |
| !! | AAGTTGGTGAGAAAAAGGAC+AGG | + | chr1_1:27149695-27149714 | Msa0016340:CDS | 40.0% |
| !! | AGTTGGTGAGAAAAAGGACA+GGG | + | chr1_1:27149696-27149715 | Msa0016340:CDS | 40.0% |
| AGATGCCTTAAATGCAACCA+AGG | + | chr1_1:27149723-27149742 | Msa0016340:CDS | 40.0% | |
| TTCTGATCAAAATTGGCGGT+TGG | - | chr1_1:27149905-27149924 | None:intergenic | 40.0% | |
| ATTGCAGGATTAAGCCTGAA+AGG | - | chr1_1:27150029-27150048 | None:intergenic | 40.0% | |
| GAACAGGATAATCCTGATCT+TGG | + | chr1_1:27150211-27150230 | Msa0016340:CDS | 40.0% | |
| AAACAAGGAACACTGACCTT+TGG | - | chr1_1:27150248-27150267 | None:intergenic | 40.0% | |
| ! | TATGAAGACTTGGATTGGAG+TGG | + | chr1_1:27150656-27150675 | Msa0016340:three_prime_UTR | 40.0% |
| GAGAGATTAAAGCTGTAGGT+AGG | + | chr1_1:27150739-27150758 | Msa0016340:three_prime_UTR | 40.0% | |
| GCCTCTGTTAATTTCCAAGT+TGG | + | chr1_1:27150878-27150897 | Msa0016340:three_prime_UTR | 40.0% | |
| TTCTTGTGAAAGGACCAACT+TGG | - | chr1_1:27150895-27150914 | None:intergenic | 40.0% | |
| ! | AAGTTGGTCCTTTCACAAGA+AGG | + | chr1_1:27150894-27150913 | Msa0016340:three_prime_UTR | 40.0% |
| TCATCAACCTTGGATGTTCA+TGG | + | chr1_1:27150978-27150997 | Msa0016340:three_prime_UTR | 40.0% | |
| !! | GAAGCAGCTTCTAGGGTTTA+GGG | - | chr1_1:27146040-27146059 | None:intergenic | 45.0% |
| !! | AGAAGCAGCTTCTAGGGTTT+AGG | - | chr1_1:27146041-27146060 | None:intergenic | 45.0% |
| ! | CTCTAGAAGAAGCAGCTTCT+AGG | - | chr1_1:27146048-27146067 | None:intergenic | 45.0% |
| !!! | CGCTGCAGAGTTGTTTTTGA+AGG | - | chr1_1:27146082-27146101 | None:intergenic | 45.0% |
| GTACATGGTGTGGTTGGAAT+TGG | - | chr1_1:27146163-27146182 | None:intergenic | 45.0% | |
| AAAACGGTACATGGTGTGGT+TGG | - | chr1_1:27146169-27146188 | None:intergenic | 45.0% | |
| AAGCAAAACGGTACATGGTG+TGG | - | chr1_1:27146173-27146192 | None:intergenic | 45.0% | |
| TGCATAGATTGGAAGTAGGG+TGG | + | chr1_1:27146624-27146643 | Msa0016340:intron | 45.0% | |
| AGAGATCAAATTTGGCGTGG+AGG | + | chr1_1:27146672-27146691 | Msa0016340:CDS | 45.0% | |
| GCTCGTGCTTTGATGCTTAA+GGG | + | chr1_1:27146694-27146713 | Msa0016340:CDS | 45.0% | |
| CTTAGTTACCTTAGGACCCA+TGG | - | chr1_1:27146752-27146771 | None:intergenic | 45.0% | |
| TCGCAGTGGAATGATGTCTT+TGG | + | chr1_1:27146797-27146816 | Msa0016340:intron | 45.0% | |
| ! | AGAGGGAAGAACACTAGCTT+TGG | + | chr1_1:27146903-27146922 | Msa0016340:intron | 45.0% |
| !! | TAGCTTTGGTTGTAGCCTGT+AGG | + | chr1_1:27146917-27146936 | Msa0016340:intron | 45.0% |
| GTGGTGATTGAGCAAAGCTT+TGG | + | chr1_1:27147024-27147043 | Msa0016340:CDS | 45.0% | |
| GCCCCTAAAGTGACAAAAGA+TGG | + | chr1_1:27147048-27147067 | Msa0016340:CDS | 45.0% | |
| GACAAAAGATGGAGTCACTG+TGG | + | chr1_1:27147059-27147078 | Msa0016340:CDS | 45.0% | |
| TGCAACCTGCTTTACAAGAC+TGG | - | chr1_1:27147127-27147146 | None:intergenic | 45.0% | |
| AATGCTACCAATGATGTGGC+TGG | + | chr1_1:27147147-27147166 | Msa0016340:CDS | 45.0% | |
| !!! | TCGGTTTTATTCCTAGGACG+TGG | + | chr1_1:27147233-27147252 | Msa0016340:intron | 45.0% |
| TTCCTAGGACGTGGTTGATT+CGG | + | chr1_1:27147242-27147261 | Msa0016340:intron | 45.0% | |
| !!! | CTGGTTTTATTCCTAGGACG+TGG | + | chr1_1:27147367-27147386 | Msa0016340:intron | 45.0% |
| GGTAAGAACTGTAGCACAAG+TGG | - | chr1_1:27147501-27147520 | None:intergenic | 45.0% | |
| CTTGTGCTACAGTTCTTACC+CGG | + | chr1_1:27147501-27147520 | Msa0016340:CDS | 45.0% | |
| TTGTGCTACAGTTCTTACCC+GGG | + | chr1_1:27147502-27147521 | Msa0016340:CDS | 45.0% | |
| TCCTTCCGTAAATATTGCCC+GGG | - | chr1_1:27147522-27147541 | None:intergenic | 45.0% | |
| TGCAGCTGGAATGAATGCAA+TGG | + | chr1_1:27147553-27147572 | Msa0016340:CDS | 45.0% | |
| GAATGAATGCAATGGACCTG+AGG | + | chr1_1:27147561-27147580 | Msa0016340:CDS | 45.0% | |
| CCATATTTATACCTCGCCTC+AGG | - | chr1_1:27147580-27147599 | None:intergenic | 45.0% | |
| CCTGAGGCGAGGTATAAATA+TGG | + | chr1_1:27147577-27147596 | Msa0016340:CDS | 45.0% | |
| ATATTAGCCACAAGGACTGC+AGG | + | chr1_1:27147703-27147722 | Msa0016340:intron | 45.0% | |
| GCAAAAGCCATGGAGAAAGT+TGG | + | chr1_1:27147819-27147838 | Msa0016340:CDS | 45.0% | |
| CACGGCAAGATGACAATAAG+TGG | - | chr1_1:27147989-27148008 | None:intergenic | 45.0% | |
| CCAGCATATCACAAAGTGCA+CGG | - | chr1_1:27148007-27148026 | None:intergenic | 45.0% | |
| CGTGCACTTTGTGATATGCT+GGG | + | chr1_1:27148005-27148024 | Msa0016340:intron | 45.0% | |
| ATGCTGGGTTATCACGTTTC+AGG | + | chr1_1:27148020-27148039 | Msa0016340:intron | 45.0% | |
| TGGGTTATCACGTTTCAGGA+TGG | + | chr1_1:27148024-27148043 | Msa0016340:intron | 45.0% | |
| ATGATGCTCCACTACTATCG+TGG | - | chr1_1:27148241-27148260 | None:intergenic | 45.0% | |
| TCATGACAATGCATGGAGCA+AGG | - | chr1_1:27148474-27148493 | None:intergenic | 45.0% | |
| TTTGTTACCACAGGAACTCG+AGG | + | chr1_1:27148533-27148552 | Msa0016340:intron | 45.0% | |
| ! | TCCTGTTTTCCCCAAAACCA+GGG | - | chr1_1:27148931-27148950 | None:intergenic | 45.0% |
| ! | TTCCTGTTTTCCCCAAAACC+AGG | - | chr1_1:27148932-27148951 | None:intergenic | 45.0% |
| AAACAGGAAATCTGGTCTCC+AGG | + | chr1_1:27148943-27148962 | Msa0016340:CDS | 45.0% | |
| ! | CGGTTCTTGCAAAAAGGTAC+TGG | + | chr1_1:27149133-27149152 | Msa0016340:intron | 45.0% |
| ! | GAAAGATTGGCCAAGCTTTC+TGG | + | chr1_1:27149532-27149551 | Msa0016340:CDS | 45.0% |
| !! | GGCTGAAGTTGGTGAGAAAA+AGG | + | chr1_1:27149690-27149709 | Msa0016340:CDS | 45.0% |
| AGCTGCCTTGGTTGCATTTA+AGG | - | chr1_1:27149731-27149750 | None:intergenic | 45.0% | |
| !! | GTATGTTTTTGCACAGGTGG+TGG | + | chr1_1:27149839-27149858 | Msa0016340:intron | 45.0% |
| AGCCTGAAAGGAATTGACGA+GGG | - | chr1_1:27150017-27150036 | None:intergenic | 45.0% | |
| AAGCCTGAAAGGAATTGACG+AGG | - | chr1_1:27150018-27150037 | None:intergenic | 45.0% | |
| TGCATCAAATGCTGGAGTAG+AGG | + | chr1_1:27150162-27150181 | Msa0016340:CDS | 45.0% | |
| GCATCAAATGCTGGAGTAGA+GGG | + | chr1_1:27150163-27150182 | Msa0016340:CDS | 45.0% | |
| GCTGCTATGAAGACTTGGAT+TGG | + | chr1_1:27150651-27150670 | Msa0016340:exon | 45.0% | |
| CCATCAACCATGAACATCCA+AGG | - | chr1_1:27150988-27151007 | None:intergenic | 45.0% | |
| CCTTGGATGTTCATGGTTGA+TGG | + | chr1_1:27150985-27151004 | Msa0016340:three_prime_UTR | 45.0% | |
| !! | TAAAAAAAAGATATTAATAA+AGG | - | chr1_1:27146596-27146615 | None:intergenic | 5.0% |
| !! | TTAGAAATTAAATTTAAATA+CGG | + | chr1_1:27147396-27147415 | Msa0016340:intron | 5.0% |
| !!! | AAGAAAATATTAATATATTT+TGG | + | chr1_1:27149010-27149029 | Msa0016340:intron | 5.0% |
| CATCACTTGCCTCCAAAGCT+CGG | + | chr1_1:27146193-27146212 | Msa0016340:CDS | 50.0% | |
| ! | GATGACTTACCGAGCTTTGG+AGG | - | chr1_1:27146205-27146224 | None:intergenic | 50.0% |
| TGCTAGGAGCAACGCTAATC+AGG | + | chr1_1:27146501-27146520 | Msa0016340:CDS | 50.0% | |
| AGATTGGAAGTAGGGTGGCA+TGG | + | chr1_1:27146629-27146648 | Msa0016340:intron | 50.0% | |
| GGCTCGTGCTTTGATGCTTA+AGG | + | chr1_1:27146693-27146712 | Msa0016340:CDS | 50.0% | |
| !! | GGGTGTTGAAGAACTTGCTG+AGG | + | chr1_1:27146714-27146733 | Msa0016340:CDS | 50.0% |
| GAACACGTGAAGGAAACGGA+AGG | - | chr1_1:27146779-27146798 | None:intergenic | 50.0% | |
| CTGCGAACACGTGAAGGAAA+CGG | - | chr1_1:27146783-27146802 | None:intergenic | 50.0% | |
| TTTCCTTCACGTGTTCGCAG+TGG | + | chr1_1:27146783-27146802 | Msa0016340:intron | 50.0% | |
| ATTCCACTGCGAACACGTGA+AGG | - | chr1_1:27146789-27146808 | None:intergenic | 50.0% | |
| TTGGTTGTAGCCTGTAGGAC+TGG | + | chr1_1:27146922-27146941 | Msa0016340:intron | 50.0% | |
| CACGTTACGGCCCTAAAAAC+AGG | - | chr1_1:27147007-27147026 | None:intergenic | 50.0% | |
| !!! | CTGTTTTTAGGGCCGTAACG+TGG | + | chr1_1:27147005-27147024 | Msa0016340:intron | 50.0% |
| ! | TGGTGCCAGTCTTGTAAAGC+AGG | + | chr1_1:27147119-27147138 | Msa0016340:CDS | 50.0% |
| ACCAATGATGTGGCTGGTGA+TGG | + | chr1_1:27147153-27147172 | Msa0016340:CDS | 50.0% | |
| ACCATCACCAGCCACATCAT+TGG | - | chr1_1:27147157-27147176 | None:intergenic | 50.0% | |
| AACCGAATCAACCACGTCCT+AGG | - | chr1_1:27147247-27147266 | None:intergenic | 50.0% | |
| ACCCGGGCAATATTTACGGA+AGG | + | chr1_1:27147518-27147537 | Msa0016340:CDS | 50.0% | |
| GGATGCAAATCAGTTGCAGC+TGG | + | chr1_1:27147539-27147558 | Msa0016340:CDS | 50.0% | |
| CCGTGCACTTTGTGATATGC+TGG | + | chr1_1:27148004-27148023 | Msa0016340:intron | 50.0% | |
| GAAGGAATGAAGCTTGACCG+AGG | + | chr1_1:27148078-27148097 | Msa0016340:CDS | 50.0% | |
| !! | CGATCAAAGCCCCTGGTTTT+GGG | + | chr1_1:27148918-27148937 | Msa0016340:CDS | 50.0% |
| !!! | GATCAAAGCCCCTGGTTTTG+GGG | + | chr1_1:27148919-27148938 | Msa0016340:CDS | 50.0% |
| ! | CCTGTTTTCCCCAAAACCAG+GGG | - | chr1_1:27148930-27148949 | None:intergenic | 50.0% |
| CTGTAAGAACAGCGAGATCC+TGG | - | chr1_1:27148964-27148983 | None:intergenic | 50.0% | |
| CAGGATCTCGCTGTTCTTAC+AGG | + | chr1_1:27148962-27148981 | Msa0016340:CDS | 50.0% | |
| GATCTCGCTGTTCTTACAGG+AGG | + | chr1_1:27148965-27148984 | Msa0016340:CDS | 50.0% | |
| CAGCTTATCACCGAAGAGCT+TGG | + | chr1_1:27149077-27149096 | Msa0016340:intron | 50.0% | |
| ! | AGATTGGCCAAGCTTTCTGG+AGG | + | chr1_1:27149535-27149554 | Msa0016340:CDS | 50.0% |
| TGCAACTCCTCCAGAAAGCT+TGG | - | chr1_1:27149545-27149564 | None:intergenic | 50.0% | |
| TGGAGGAGTTGCAGTGCTTA+AGG | + | chr1_1:27149552-27149571 | Msa0016340:CDS | 50.0% | |
| CGAGGGAGGAGAATGGAATA+TGG | - | chr1_1:27150000-27150019 | None:intergenic | 50.0% | |
| GAATTGACGAGGGAGGAGAA+TGG | - | chr1_1:27150007-27150026 | None:intergenic | 50.0% | |
| CTGAAAGGAATTGACGAGGG+AGG | - | chr1_1:27150014-27150033 | None:intergenic | 50.0% | |
| CTCCCTCGTCAATTCCTTTC+AGG | + | chr1_1:27150012-27150031 | Msa0016340:intron | 50.0% | |
| !! | GTAGAGGGTGCTGTTGTTGT+TGG | + | chr1_1:27150178-27150197 | Msa0016340:CDS | 50.0% |
| CAAGGAACACTGACCTTTGG+CGG | - | chr1_1:27150245-27150264 | None:intergenic | 50.0% | |
| GCGGTCCTAATCACCTTCAA+TGG | - | chr1_1:27150423-27150442 | None:intergenic | 50.0% | |
| TAGTCCATACCACCCATACC+AGG | - | chr1_1:27150628-27150647 | None:intergenic | 50.0% | |
| AATGCAATGGACCTGAGGCG+AGG | + | chr1_1:27147566-27147585 | Msa0016340:CDS | 55.0% | |
| CTACTGTCCTGCAGTCCTTG+TGG | - | chr1_1:27147713-27147732 | None:intergenic | 55.0% | |
| TCGTTGTCAGGTGTCCGTGT+CGG | + | chr1_1:27148445-27148464 | Msa0016340:intron | 55.0% | |
| ATGGAGCAAGGACACCGACA+CGG | - | chr1_1:27148462-27148481 | None:intergenic | 55.0% | |
| AGAGGATCCTCGAGTTCCTG+TGG | - | chr1_1:27148543-27148562 | None:intergenic | 55.0% | |
| GTATGTGCGATCAAAGCCCC+TGG | + | chr1_1:27148911-27148930 | Msa0016340:CDS | 55.0% | |
| ! | GCGATCAAAGCCCCTGGTTT+TGG | + | chr1_1:27148917-27148936 | Msa0016340:CDS | 55.0% |
| !!! | CCCCTGGTTTTGGGGAAAAC+AGG | + | chr1_1:27148927-27148946 | Msa0016340:CDS | 55.0% |
| GAAGATTGGAGGAGCCAGTG+AGG | + | chr1_1:27149669-27149688 | Msa0016340:intron | 55.0% | |
| CTCACCAACTTCAGCCTCAC+TGG | - | chr1_1:27149686-27149705 | None:intergenic | 55.0% | |
| TGCAACCAAGGCAGCTGTAG+AGG | + | chr1_1:27149735-27149754 | Msa0016340:CDS | 55.0% | |
| AACCAAGGCAGCTGTAGAGG+AGG | + | chr1_1:27149738-27149757 | Msa0016340:CDS | 55.0% | |
| ACCAAGGCAGCTGTAGAGGA+GGG | + | chr1_1:27149739-27149758 | Msa0016340:CDS | 55.0% | |
| ! | GTAGAGGAGGGCATAGTACC+TGG | + | chr1_1:27149751-27149770 | Msa0016340:CDS | 55.0% |
| GCGGCATCGTAACCAAGATC+AGG | - | chr1_1:27150226-27150245 | None:intergenic | 55.0% | |
| CTTGGTTACGATGCCGCCAA+AGG | + | chr1_1:27150229-27150248 | Msa0016340:CDS | 55.0% | |
| GAAGGTGATTAGGACCGCCT+TGG | + | chr1_1:27150425-27150444 | Msa0016340:CDS | 55.0% | |
| AAAGATGCTCCTGCCATGCC+TGG | + | chr1_1:27150607-27150626 | Msa0016340:CDS | 55.0% | |
| CATACCACCCATACCAGGCA+TGG | - | chr1_1:27150623-27150642 | None:intergenic | 55.0% | |
| CATGCCTGGTATGGGTGGTA+TGG | + | chr1_1:27150621-27150640 | Msa0016340:CDS | 55.0% | |
| GGAGCCAGTGAGGCTGAAGT+TGG | + | chr1_1:27149679-27149698 | Msa0016340:CDS | 60.0% | |
| CTACCTGGCTGCGTCAACCA+AGG | - | chr1_1:27150445-27150464 | None:intergenic | 60.0% | |
| CTTGGTTGACGCAGCCAGGT+AGG | + | chr1_1:27150443-27150462 | Msa0016340:intron | 60.0% | |
| TGCTCCTGCCATGCCTGGTA+TGG | + | chr1_1:27150612-27150631 | Msa0016340:CDS | 60.0% | |
| GCTCCTGCCATGCCTGGTAT+GGG | + | chr1_1:27150613-27150632 | Msa0016340:CDS | 60.0% | |
| GCCCTCCTCTACAGCTGCCT+TGG | - | chr1_1:27149743-27149762 | None:intergenic | 65.0% | |
| CCTGGCTGCGTCAACCAAGG+CGG | - | chr1_1:27150442-27150461 | None:intergenic | 65.0% | |
| CCACCCATACCAGGCATGGC+AGG | - | chr1_1:27150619-27150638 | None:intergenic | 65.0% | |
| CCTGCCATGCCTGGTATGGG+TGG | + | chr1_1:27150616-27150635 | Msa0016340:CDS | 65.0% | |
| CCGCCTTGGTTGACGCAGCC+AGG | + | chr1_1:27150439-27150458 | Msa0016340:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 27146017 | 27151062 | 27146017 | ID=Msa0016340;Name=Msa0016340 |
| chr1_1 | mRNA | 27146017 | 27151062 | 27146017 | ID=Msa0016340-mRNA-1;Parent=Msa0016340;Name=Msa0016340-mRNA-1;_AED=0.31;_eAED=0.31;_QI=160|1|1|1|1|1|18|411|574 |
| chr1_1 | exon | 27146017 | 27146214 | 27146017 | ID=Msa0016340-mRNA-1:exon:9116;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27146498 | 27146522 | 27146498 | ID=Msa0016340-mRNA-1:exon:9117;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27146631 | 27146762 | 27146631 | ID=Msa0016340-mRNA-1:exon:9118;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27147015 | 27147174 | 27147015 | ID=Msa0016340-mRNA-1:exon:9119;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27147495 | 27147670 | 27147495 | ID=Msa0016340-mRNA-1:exon:9120;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27147771 | 27147866 | 27147771 | ID=Msa0016340-mRNA-1:exon:9121;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27148042 | 27148146 | 27148042 | ID=Msa0016340-mRNA-1:exon:9122;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27148546 | 27148632 | 27148546 | ID=Msa0016340-mRNA-1:exon:9123;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27148719 | 27148808 | 27148719 | ID=Msa0016340-mRNA-1:exon:9124;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27148911 | 27148991 | 27148911 | ID=Msa0016340-mRNA-1:exon:9125;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27149080 | 27149148 | 27149080 | ID=Msa0016340-mRNA-1:exon:9126;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27149274 | 27149351 | 27149274 | ID=Msa0016340-mRNA-1:exon:9127;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27149478 | 27149573 | 27149478 | ID=Msa0016340-mRNA-1:exon:9128;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27149673 | 27149772 | 27149673 | ID=Msa0016340-mRNA-1:exon:9129;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27149855 | 27149958 | 27149855 | ID=Msa0016340-mRNA-1:exon:9130;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27150145 | 27150250 | 27150145 | ID=Msa0016340-mRNA-1:exon:9131;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27150382 | 27150460 | 27150382 | ID=Msa0016340-mRNA-1:exon:9132;Parent=Msa0016340-mRNA-1 |
| chr1_1 | exon | 27150549 | 27151062 | 27150549 | ID=Msa0016340-mRNA-1:exon:9133;Parent=Msa0016340-mRNA-1 |
| chr1_1 | five_prime_UTR | 27146017 | 27146176 | 27146017 | ID=Msa0016340-mRNA-1:five_prime_utr;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27146177 | 27146214 | 27146177 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27146498 | 27146522 | 27146498 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27146631 | 27146762 | 27146631 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27147015 | 27147174 | 27147015 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27147495 | 27147670 | 27147495 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27147771 | 27147866 | 27147771 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27148042 | 27148146 | 27148042 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27148546 | 27148632 | 27148546 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27148719 | 27148808 | 27148719 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27148911 | 27148991 | 27148911 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27149080 | 27149148 | 27149080 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27149274 | 27149351 | 27149274 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27149478 | 27149573 | 27149478 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27149673 | 27149772 | 27149673 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27149855 | 27149958 | 27149855 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27150145 | 27150250 | 27150145 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27150382 | 27150460 | 27150382 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | CDS | 27150549 | 27150651 | 27150549 | ID=Msa0016340-mRNA-1:cds;Parent=Msa0016340-mRNA-1 |
| chr1_1 | three_prime_UTR | 27150652 | 27151062 | 27150652 | ID=Msa0016340-mRNA-1:three_prime_utr;Parent=Msa0016340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
