Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163620 | A0A072VJQ4 | 90.160 | 376 | 11 | 1 | 1 | 350 | 1 | 376 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038020 | Msa0163620 | -0.800314 | 1.527229e-48 | -8.615850e-47 |
| Msa0120370 | Msa0163620 | 0.989660 | 4.383724e-179 | -8.615850e-47 |
| Msa0140170 | Msa0163620 | -0.807949 | 3.936361e-50 | -8.615850e-47 |
| Msa0163620 | Msa0279210 | 0.803780 | 2.960049e-49 | -8.615850e-47 |
| Msa0163620 | Msa0363170 | -0.810974 | 8.824475e-51 | -8.615850e-47 |
| Msa0163620 | Msa0388030 | 0.847295 | 1.266134e-59 | -8.615850e-47 |
| Msa0163620 | Msa0462540 | -0.808114 | 3.631016e-50 | -8.615850e-47 |
| Msa0163620 | Msa0464900 | -0.824884 | 6.337449e-54 | -8.615850e-47 |
| Msa0163620 | Msa0519390 | -0.805643 | 1.208961e-49 | -8.615850e-47 |
| Msa0163620 | Msa0617410 | 0.804292 | 2.317196e-49 | -8.615850e-47 |
| Msa0163620 | Msa0930400 | 0.807105 | 5.945343e-50 | -8.615850e-47 |
| Msa0163620 | Msa0944730 | -0.801027 | 1.092685e-48 | -8.615850e-47 |
| Msa0163620 | Msa0946690 | 0.821411 | 4.096946e-53 | -8.615850e-47 |
| Msa0163620 | Msa1029080 | 0.826832 | 2.184518e-54 | -8.615850e-47 |
| Msa0163620 | Msa1145250 | 0.802430 | 5.630761e-49 | -8.615850e-47 |
| Msa0163620 | Msa1156170 | 0.827158 | 1.825358e-54 | -8.615850e-47 |
| Msa0163620 | Msa1229850 | -0.806268 | 8.934086e-50 | -8.615850e-47 |
| Msa0163620 | Msa1236070 | 0.800974 | 1.120225e-48 | -8.615850e-47 |
| Msa0163620 | Msa1459760 | 0.804017 | 2.643009e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163620 | MtrunA17_Chr1g0178721 | 90.160 | 376 | 11 | 1 | 1 | 350 | 1 | 376 | 0.0 | 694 |
| Msa0163620 | MtrunA17_Chr1g0178741 | 84.309 | 376 | 33 | 1 | 1 | 350 | 26 | 401 | 0.0 | 653 |
| Msa0163620 | MtrunA17_Chr1g0171181 | 50.147 | 341 | 114 | 3 | 33 | 347 | 1 | 311 | 1.95e-118 | 345 |
| Msa0163620 | MtrunA17_Chr2g0321341 | 48.094 | 341 | 145 | 4 | 33 | 347 | 2 | 336 | 4.12e-116 | 340 |
| Msa0163620 | MtrunA17_Chr2g0321351 | 43.210 | 324 | 150 | 5 | 51 | 347 | 28 | 344 | 1.41e-87 | 268 |
| Msa0163620 | MtrunA17_Chr4g0026421 | 41.643 | 353 | 158 | 8 | 33 | 347 | 1 | 343 | 6.26e-86 | 263 |
| Msa0163620 | MtrunA17_Chr3g0136021 | 40.066 | 302 | 149 | 4 | 73 | 347 | 130 | 426 | 1.41e-73 | 234 |
| Msa0163620 | MtrunA17_Chr4g0029971 | 25.067 | 375 | 208 | 11 | 38 | 349 | 86 | 450 | 2.79e-24 | 103 |
| Msa0163620 | MtrunA17_Chr7g0263721 | 24.332 | 337 | 198 | 9 | 67 | 349 | 151 | 484 | 1.10e-21 | 95.9 |
| Msa0163620 | MtrunA17_Chr2g0321371 | 43.662 | 71 | 36 | 1 | 281 | 347 | 1 | 71 | 5.35e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163620 | AT3G48410.1 | 57.923 | 366 | 124 | 3 | 8 | 347 | 10 | 371 | 3.17e-151 | 431 |
| Msa0163620 | AT3G48410.2 | 57.923 | 366 | 124 | 3 | 8 | 347 | 52 | 413 | 7.82e-151 | 431 |
| Msa0163620 | AT2G36290.1 | 58.453 | 349 | 116 | 2 | 31 | 350 | 15 | 363 | 8.50e-151 | 429 |
| Msa0163620 | AT2G36290.2 | 58.213 | 347 | 116 | 2 | 33 | 350 | 3 | 349 | 4.71e-149 | 424 |
| Msa0163620 | AT1G74300.1 | 58.359 | 329 | 110 | 2 | 46 | 347 | 16 | 344 | 2.17e-143 | 409 |
| Msa0163620 | AT1G74280.1 | 54.878 | 328 | 121 | 2 | 47 | 347 | 34 | 361 | 5.13e-133 | 384 |
| Msa0163620 | AT1G74290.1 | 50.000 | 364 | 147 | 4 | 9 | 343 | 1 | 358 | 8.91e-129 | 374 |
| Msa0163620 | AT3G54240.1 | 46.939 | 343 | 155 | 2 | 33 | 349 | 5 | 346 | 1.66e-120 | 352 |
| Msa0163620 | AT5G22460.2 | 45.455 | 341 | 156 | 3 | 33 | 347 | 2 | 338 | 9.58e-110 | 324 |
| Msa0163620 | AT5G22460.3 | 45.455 | 341 | 156 | 3 | 33 | 347 | 2 | 338 | 9.58e-110 | 324 |
| Msa0163620 | AT5G22460.1 | 45.455 | 341 | 156 | 3 | 33 | 347 | 2 | 338 | 9.58e-110 | 324 |
| Msa0163620 | AT1G74300.2 | 56.327 | 245 | 81 | 1 | 129 | 347 | 1 | 245 | 1.67e-98 | 292 |
| Msa0163620 | AT3G03240.1 | 42.244 | 303 | 140 | 6 | 71 | 345 | 35 | 330 | 6.42e-77 | 240 |
| Msa0163620 | AT3G03230.1 | 43.092 | 304 | 135 | 7 | 71 | 345 | 35 | 329 | 3.49e-75 | 235 |
| Msa0163620 | AT3G44510.2 | 38.689 | 305 | 152 | 4 | 73 | 347 | 8 | 307 | 7.52e-69 | 219 |
| Msa0163620 | AT1G08310.2 | 37.785 | 307 | 159 | 4 | 68 | 347 | 5 | 306 | 6.27e-68 | 216 |
| Msa0163620 | AT1G08310.1 | 38.111 | 307 | 155 | 5 | 68 | 347 | 5 | 303 | 1.73e-66 | 213 |
| Msa0163620 | AT1G08310.3 | 38.793 | 232 | 108 | 6 | 68 | 271 | 5 | 230 | 1.33e-40 | 143 |
| Msa0163620 | AT3G44510.3 | 39.196 | 199 | 90 | 3 | 73 | 245 | 8 | 201 | 1.64e-39 | 140 |
| Msa0163620 | AT3G44510.1 | 35.165 | 182 | 112 | 2 | 170 | 347 | 22 | 201 | 9.50e-35 | 127 |
| Msa0163620 | AT3G44510.5 | 35.165 | 182 | 112 | 2 | 170 | 347 | 22 | 201 | 9.50e-35 | 127 |
| Msa0163620 | AT3G44510.4 | 35.165 | 182 | 112 | 2 | 170 | 347 | 22 | 201 | 9.50e-35 | 127 |
| Msa0163620 | AT3G09690.1 | 24.779 | 339 | 191 | 7 | 68 | 348 | 160 | 492 | 4.00e-22 | 97.8 |
| Msa0163620 | AT3G09690.2 | 24.779 | 339 | 191 | 7 | 68 | 348 | 160 | 492 | 4.00e-22 | 97.8 |
| Msa0163620 | AT5G02970.1 | 23.691 | 363 | 221 | 7 | 40 | 348 | 129 | 489 | 3.00e-21 | 95.1 |
Find 135 sgRNAs with CRISPR-Local
Find 394 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGATGTTGTTAAGGAATT+AGG | 0.119593 | 1_4:-41860301 | Msa0163620:CDS |
| CCATCTCTTAGTTTGATTCT+TGG | 0.143000 | 1_4:+41860539 | None:intergenic |
| CCAGTAATCACACTAAAATT+TGG | 0.175854 | 1_4:+41859617 | None:intergenic |
| CTCCACCGTGATTTAAATAT+TGG | 0.211155 | 1_4:-41858818 | Msa0163620:CDS |
| CATTAGCAGTGTTGTTTATT+GGG | 0.217421 | 1_4:-41860643 | Msa0163620:CDS |
| AAAACCAATGACATAGAATT+TGG | 0.233953 | 1_4:+41860159 | None:intergenic |
| ACATTAGCAGTGTTGTTTAT+TGG | 0.237727 | 1_4:-41860644 | Msa0163620:CDS |
| AGAAGATTTGTTGGCCCTTC+TGG | 0.238734 | 1_4:+41863077 | None:intergenic |
| GCATTTGATGGAGGATTGTT+AGG | 0.260738 | 1_4:-41858264 | Msa0163620:three_prime_UTR |
| TTGATTCTTGGTGCTGTTAT+AGG | 0.262071 | 1_4:+41860551 | None:intergenic |
| CGTGATTTAAATATTGGATT+TGG | 0.285521 | 1_4:-41858812 | Msa0163620:CDS |
| GCGTCGGCATTTATCATCTT+TGG | 0.286518 | 1_4:-41858524 | Msa0163620:three_prime_UTR |
| ATGAAGGTTCTGTTCATCTT+TGG | 0.289079 | 1_4:-41858742 | Msa0163620:CDS |
| ATTGGTCATGCAATTTCATT+TGG | 0.296395 | 1_4:+41859705 | None:intergenic |
| GCATGGAGATGAAGATATTA+TGG | 0.301895 | 1_4:-41858720 | Msa0163620:CDS |
| GAACCTTCATTGTTTGGAAA+TGG | 0.313934 | 1_4:+41858755 | None:intergenic |
| AGGATGTTGTTAAGGAATTA+GGG | 0.314598 | 1_4:-41860300 | Msa0163620:CDS |
| TGAACAGAACCTTCATTGTT+TGG | 0.321816 | 1_4:+41858749 | None:intergenic |
| ATGCAATTTCATTTGGGAAT+AGG | 0.323079 | 1_4:+41859712 | None:intergenic |
| ATGCTCTTTAACGTACGATT+TGG | 0.323126 | 1_4:+41860226 | None:intergenic |
| TATAGAAAATTACGGGTGAT+AGG | 0.332100 | 1_4:+41860405 | None:intergenic |
| TCACTCACACCATCAGCATT+AGG | 0.353928 | 1_4:+41858614 | None:intergenic |
| GGCAAGCTCTTCTATATCTA+AGG | 0.355031 | 1_4:+41860201 | None:intergenic |
| AGAAGAGCTTGCCGATCAAT+TGG | 0.361536 | 1_4:-41860191 | Msa0163620:CDS |
| TAAATATTGGATTTGGAAGA+TGG | 0.363591 | 1_4:-41858805 | Msa0163620:CDS |
| TGAATCTTTACATGATCAAT+AGG | 0.364089 | 1_4:-41858092 | Msa0163620:three_prime_UTR |
| CAGTAATCACACTAAAATTT+GGG | 0.367452 | 1_4:+41859618 | None:intergenic |
| GCTTCGGCCGTTAAGTTTGC+AGG | 0.370202 | 1_4:+41859734 | None:intergenic |
| TCGTAAATGAATGCATTTGA+TGG | 0.384455 | 1_4:-41858276 | Msa0163620:three_prime_UTR |
| CTTGCCGATCAATTGGGATT+GGG | 0.401337 | 1_4:-41860184 | Msa0163620:CDS |
| CACTTGCAGGCATGACGCTT+TGG | 0.401773 | 1_4:-41860438 | Msa0163620:CDS |
| TCAATAGGCGCCTTGCTGTT+AGG | 0.402360 | 1_4:-41858077 | Msa0163620:three_prime_UTR |
| AGAGCTTGTAACTAAGTTGA+TGG | 0.403717 | 1_4:-41859564 | Msa0163620:CDS |
| TGTTTATTGGGGTTCTAGCA+TGG | 0.403951 | 1_4:-41860631 | Msa0163620:CDS |
| ACACGCCATGGCTAACATAC+TGG | 0.404122 | 1_4:-41859661 | Msa0163620:CDS |
| GGGTCCAAATTCTATGTCAT+TGG | 0.407370 | 1_4:-41860163 | Msa0163620:intron |
| TTCTCTTAACAAATGAATCA+AGG | 0.407413 | 1_4:+41858183 | None:intergenic |
| ATCAGGAGAGCCACATACTT+TGG | 0.411608 | 1_4:+41860580 | None:intergenic |
| TCTTGTTTCGAAAGGATGTC+TGG | 0.420380 | 1_4:+41859590 | None:intergenic |
| CACTCACACCATCAGCATTA+GGG | 0.421844 | 1_4:+41858615 | None:intergenic |
| TTGTTAAGAGAAAATTCAAT+TGG | 0.422569 | 1_4:-41858172 | Msa0163620:three_prime_UTR |
| GTTAAGTTTGCAGGAAGATC+AGG | 0.425710 | 1_4:+41859743 | None:intergenic |
| CTGAAAAGAAGAAGATTTGT+TGG | 0.426482 | 1_4:+41863068 | None:intergenic |
| TCAGGAGAGCCACATACTTT+GGG | 0.427545 | 1_4:+41860581 | None:intergenic |
| GGGAAGAGGTGGCCAGATCC+TGG | 0.429510 | 1_4:+41858635 | None:intergenic |
| TTTCATTTGGGAATAGGCTT+CGG | 0.430276 | 1_4:+41859718 | None:intergenic |
| GTTTATTGGGGTTCTAGCAT+GGG | 0.432543 | 1_4:-41860630 | Msa0163620:CDS |
| TGTATCGGTCACCGGCTATC+CGG | 0.433382 | 1_4:-41858552 | Msa0163620:three_prime_UTR |
| GCTTGCCGATCAATTGGGAT+TGG | 0.439212 | 1_4:-41860185 | Msa0163620:CDS |
| ATTCACTACCATGAACTTCC+AGG | 0.442710 | 1_4:-41858653 | Msa0163620:CDS |
| GCTCAAAGTTTATCATATAG+AGG | 0.443839 | 1_4:+41858471 | None:intergenic |
| ACTAAGAGATGGAAGGCATT+TGG | 0.447348 | 1_4:-41860528 | Msa0163620:CDS |
| TTGGTCATGCAATTTCATTT+GGG | 0.449054 | 1_4:+41859706 | None:intergenic |
| GCTTGCCCAGGATGTTGTTA+AGG | 0.451047 | 1_4:-41860308 | Msa0163620:intron |
| TCCATGGTATCAACACTTGC+AGG | 0.459625 | 1_4:-41860451 | Msa0163620:CDS |
| TACCATGAACTTCCAGGATC+TGG | 0.460945 | 1_4:-41858647 | Msa0163620:CDS |
| AAATATTGGATTTGGAAGAT+GGG | 0.467038 | 1_4:-41858804 | Msa0163620:CDS |
| AATCCATTTCCAAACAATGA+AGG | 0.474443 | 1_4:-41858758 | Msa0163620:CDS |
| AAGATGGGAATATACACCTT+TGG | 0.477397 | 1_4:-41858789 | Msa0163620:CDS |
| CATTTGATGGAGGATTGTTA+GGG | 0.479944 | 1_4:-41858263 | Msa0163620:three_prime_UTR |
| TGATCTTCCTGCAAACTTAA+CGG | 0.480686 | 1_4:-41859741 | Msa0163620:CDS |
| GCTGTTATAGGTGGTCCATC+AGG | 0.480952 | 1_4:+41860563 | None:intergenic |
| ATAGAAAATTACGGGTGATA+GGG | 0.484130 | 1_4:+41860406 | None:intergenic |
| AATGAAATTGCATGACCAAT+GGG | 0.485786 | 1_4:-41859702 | Msa0163620:CDS |
| CAGAGAGTTCAAACTGAAGA+TGG | 0.486671 | 1_4:-41858499 | Msa0163620:three_prime_UTR |
| TTTAAAATTTAACAGAAGCT+GGG | 0.488669 | 1_4:-41858404 | Msa0163620:three_prime_UTR |
| GGCCAGATCCTGGAAGTTCA+TGG | 0.494202 | 1_4:+41858645 | None:intergenic |
| GAAGAGCTTGCCGATCAATT+GGG | 0.497312 | 1_4:-41860190 | Msa0163620:CDS |
| TAGCTCCAGTCGTCAACTAC+TGG | 0.500593 | 1_4:-41859769 | Msa0163620:CDS |
| TGTTAAGAGAAAATTCAATT+GGG | 0.502772 | 1_4:-41858171 | Msa0163620:three_prime_UTR |
| TTTCTTACAACAATGGCCAC+TGG | 0.505102 | 1_4:-41863141 | Msa0163620:exon |
| TCCTTTGATAGACCTGGTTA+CGG | 0.505551 | 1_4:-41860265 | Msa0163620:CDS |
| TTTAACGTACGATTTGGATC+GGG | 0.515423 | 1_4:+41860232 | None:intergenic |
| CACCTCTTCCCTAATGCTGA+TGG | 0.515464 | 1_4:-41858623 | Msa0163620:CDS |
| ATGTATCGTTGTAGTGTGAC+AGG | 0.520150 | 1_4:+41858695 | None:intergenic |
| CTTTAACGTACGATTTGGAT+CGG | 0.520977 | 1_4:+41860231 | None:intergenic |
| GGTTCTGTTCATCTTTGGCA+TGG | 0.521605 | 1_4:-41858737 | Msa0163620:CDS |
| CACCATCAGCATTAGGGAAG+AGG | 0.523364 | 1_4:+41858621 | None:intergenic |
| TTGCCGATCAATTGGGATTG+GGG | 0.524605 | 1_4:-41860183 | Msa0163620:CDS |
| GCTCTTTGTCTTGTTTCGAA+AGG | 0.526126 | 1_4:+41859582 | None:intergenic |
| GCGCAACACGAAGCGCCCAT+TGG | 0.527286 | 1_4:+41859687 | None:intergenic |
| TAGGCGCCTTGCTGTTAGGT+TGG | 0.527769 | 1_4:-41858073 | None:intergenic |
| AAATGAAATTGCATGACCAA+TGG | 0.528987 | 1_4:-41859703 | Msa0163620:CDS |
| AGAGAAAATTCAATTGGGAG+GGG | 0.530755 | 1_4:-41858166 | Msa0163620:three_prime_UTR |
| CAAATCCAATATTTAAATCA+CGG | 0.531733 | 1_4:+41858813 | None:intergenic |
| AAGAGAAAATTCAATTGGGA+GGG | 0.532081 | 1_4:-41858167 | Msa0163620:three_prime_UTR |
| AAAGTATGTGGCTCTCCTGA+TGG | 0.532692 | 1_4:-41860578 | Msa0163620:CDS |
| TATAAAATCATCTATGTCCA+TGG | 0.533222 | 1_4:-41860467 | Msa0163620:CDS |
| ATTAGCAGTGTTGTTTATTG+GGG | 0.534811 | 1_4:-41860642 | Msa0163620:CDS |
| CGACGCTAACACCGGATAGC+CGG | 0.540300 | 1_4:+41858541 | None:intergenic |
| ATGATAAACTTTGAGCAATG+TGG | 0.541257 | 1_4:-41858464 | Msa0163620:three_prime_UTR |
| CCAAGAATCAAACTAAGAGA+TGG | 0.548477 | 1_4:-41860539 | Msa0163620:CDS |
| ATTGTATCCTTTGATAGACC+TGG | 0.548650 | 1_4:-41860271 | Msa0163620:CDS |
| TAAGAGAAAATTCAATTGGG+AGG | 0.549114 | 1_4:-41858168 | Msa0163620:three_prime_UTR |
| GGCCACCAGTAGTTGACGAC+TGG | 0.552181 | 1_4:+41859764 | None:intergenic |
| GGACCCCAATCCCAATTGAT+CGG | 0.554953 | 1_4:+41860180 | None:intergenic |
| GGATCACTTTCTCCGTAACC+AGG | 0.558675 | 1_4:+41860253 | None:intergenic |
| ATAAATGCCGACGCTAACAC+CGG | 0.559779 | 1_4:+41858533 | None:intergenic |
| CAATATTTAAATCACGGTGG+AGG | 0.564703 | 1_4:+41858819 | None:intergenic |
| CACAAAGTGCATGTTCATGT+AGG | 0.569805 | 1_4:+41858324 | None:intergenic |
| CGGCTATCCGGTGTTAGCGT+CGG | 0.570068 | 1_4:-41858540 | Msa0163620:three_prime_UTR |
| CAGCTCGTTCTCACACCAGA+AGG | 0.572309 | 1_4:-41863092 | Msa0163620:CDS |
| AAAGTGCATGTTCATGTAGG+TGG | 0.572373 | 1_4:+41858327 | None:intergenic |
| TAAATGAATGCATTTGATGG+AGG | 0.573271 | 1_4:-41858273 | Msa0163620:three_prime_UTR |
| ATTCTTGGTGCTGTTATAGG+TGG | 0.577130 | 1_4:+41860554 | None:intergenic |
| GAGCCACATACTTTGGGAGG+AGG | 0.579969 | 1_4:+41860587 | None:intergenic |
| GCTCCTCCTCCCAAAGTATG+TGG | 0.583919 | 1_4:-41860590 | Msa0163620:CDS |
| GGAAAATAAAGAGAATTATG+TGG | 0.587730 | 1_4:-41859543 | Msa0163620:intron |
| ATCTCTATCGAGGAACATGT+TGG | 0.590212 | 1_4:+41858125 | None:intergenic |
| ACTGGTGGAACACTCAAAGA+TGG | 0.597899 | 1_4:-41859643 | Msa0163620:CDS |
| TTCCACCAGTATGTTAGCCA+TGG | 0.599195 | 1_4:+41859656 | None:intergenic |
| TGATAAACTTTGAGCAATGT+GGG | 0.602932 | 1_4:-41858463 | Msa0163620:three_prime_UTR |
| ACATCGCGCAAAACCTTCCG+TGG | 0.606359 | 1_4:-41858676 | Msa0163620:CDS |
| CTTTGAGCAATGTGGGCTGT+AGG | 0.612917 | 1_4:-41858456 | Msa0163620:three_prime_UTR |
| CGCCATGGCTAACATACTGG+TGG | 0.613077 | 1_4:-41859658 | Msa0163620:CDS |
| TCCGTAACCAGGTCTATCAA+AGG | 0.615706 | 1_4:+41860264 | None:intergenic |
| CTCCAGTCGTCAACTACTGG+TGG | 0.617432 | 1_4:-41859766 | Msa0163620:CDS |
| CATGGTAGTGAATCCACGGA+AGG | 0.618391 | 1_4:+41858663 | None:intergenic |
| AGTTCATGGTAGTGAATCCA+CGG | 0.620512 | 1_4:+41858659 | None:intergenic |
| TTTCTAGGGTGAGGGGTATG+CGG | 0.620550 | 1_4:-41858212 | Msa0163620:three_prime_UTR |
| AATTACGGGTGATAGGGTGT+TGG | 0.623286 | 1_4:+41860412 | None:intergenic |
| ACATGTTGGACATATAAGAC+AGG | 0.623350 | 1_4:+41858139 | None:intergenic |
| CATCAGCATTAGGGAAGAGG+TGG | 0.623642 | 1_4:+41858624 | None:intergenic |
| GAATCAAACTAAGAGATGGA+AGG | 0.623906 | 1_4:-41860535 | Msa0163620:CDS |
| TAATGCTGATGGTGTGAGTG+AGG | 0.627115 | 1_4:-41858612 | Msa0163620:CDS |
| GGAGAGCCACATACTTTGGG+AGG | 0.630582 | 1_4:+41860584 | None:intergenic |
| GCCTGCAAGTGTTGATACCA+TGG | 0.637681 | 1_4:+41860450 | None:intergenic |
| AGCTCGTTCTCACACCAGAA+GGG | 0.638872 | 1_4:-41863091 | Msa0163620:CDS |
| GGATGTTGTTAAGGAATTAG+GGG | 0.640316 | 1_4:-41860299 | Msa0163620:CDS |
| CAGAAGCAGATAAGACAACA+AGG | 0.640633 | 1_4:-41858854 | Msa0163620:CDS |
| CATTTGGCATACAAAGAGCA+TGG | 0.641716 | 1_4:-41860512 | Msa0163620:CDS |
| GTGTTGCGCACTACACGCCA+TGG | 0.662267 | 1_4:-41859673 | Msa0163620:CDS |
| ACATATCCAACCTAACAGCA+AGG | 0.667776 | 1_4:+41858067 | None:intergenic |
| ATCCAATATTTAAATCACGG+TGG | 0.678229 | 1_4:+41858816 | None:intergenic |
| ACTGTGACTAATCTCTATCG+AGG | 0.705798 | 1_4:+41858115 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTAAAACATAAATTA+TGG | + | chr1_4:41860560-41860579 | None:intergenic | 10.0% |
| !! | ATTATAATATAGAAAATTAC+GGG | + | chr1_4:41860881-41860900 | None:intergenic | 10.0% |
| !!! | TAAATTTATAACTTTTTATG+TGG | - | chr1_4:41862396-41862415 | Msa0163620:intron | 10.0% |
| !!! | TGTATTTTGATATTTACTTA+TGG | - | chr1_4:41860526-41860545 | Msa0163620:CDS | 15.0% |
| !! | ATTATGACTATGAAAATAAT+TGG | - | chr1_4:41862141-41862160 | Msa0163620:intron | 15.0% |
| !! | TAAAACTAATTTACTATTAG+TGG | + | chr1_4:41862199-41862218 | None:intergenic | 15.0% |
| !!! | TTTTTAGTTATTTTCTTTCT+AGG | - | chr1_4:41863049-41863068 | Msa0163620:intron | 15.0% |
| !!! | TTTTAGTTATTTTCTTTCTA+GGG | - | chr1_4:41863050-41863069 | Msa0163620:intron | 15.0% |
| !!! | TTTTACCATTCAAATTTGAA+TGG | - | chr1_4:41858294-41858313 | Msa0163620:three_prime_UTR | 20.0% |
| !! | TTTACCATTCAAATTTGAAT+GGG | - | chr1_4:41858295-41858314 | Msa0163620:three_prime_UTR | 20.0% |
| !! | AGAAAAGATTAGAATGAATA+TGG | - | chr1_4:41858353-41858372 | Msa0163620:three_prime_UTR | 20.0% |
| !! | TGATATCAATATCATTGAAA+AGG | - | chr1_4:41859235-41859254 | Msa0163620:intron | 20.0% |
| !! | GATATCAATATCATTGAAAA+GGG | - | chr1_4:41859236-41859255 | Msa0163620:intron | 20.0% |
| !!! | TAATTGTAATTTGTCTATTC+TGG | + | chr1_4:41859934-41859953 | None:intergenic | 20.0% |
| !! | TAGCTATAAATCTCATATTA+AGG | + | chr1_4:41860470-41860489 | None:intergenic | 20.0% |
| !! | GTTTGTAATTCCAAATTAAA+AGG | + | chr1_4:41860592-41860611 | None:intergenic | 20.0% |
| !! | TTATAAGCTTGTAGTTAATT+TGG | - | chr1_4:41861401-41861420 | Msa0163620:intron | 20.0% |
| !! | ATAGAAGAAAACTACAAATA+AGG | + | chr1_4:41861440-41861459 | None:intergenic | 20.0% |
| !! | TACATGTGTTTATATTCTTA+TGG | - | chr1_4:41861882-41861901 | Msa0163620:intron | 20.0% |
| !! | AATAATTTGAAAACAGCTTA+TGG | + | chr1_4:41862087-41862106 | None:intergenic | 20.0% |
| !! | TCTGTATTCATAAATTATCT+TGG | + | chr1_4:41862122-41862141 | None:intergenic | 20.0% |
| !! | CAAATCCAATATTTAAATCA+CGG | + | chr1_4:41862466-41862485 | None:intergenic | 20.0% |
| !!! | TTTTAAAATTTAACAGAAGC+TGG | - | chr1_4:41862871-41862890 | Msa0163620:intron | 20.0% |
| !!! | TTTAAAATTTAACAGAAGCT+GGG | - | chr1_4:41862872-41862891 | Msa0163620:intron | 20.0% |
| !! | TTGTTAAGAGAAAATTCAAT+TGG | - | chr1_4:41863104-41863123 | Msa0163620:CDS | 20.0% |
| !! | TGTTAAGAGAAAATTCAATT+GGG | - | chr1_4:41863105-41863124 | Msa0163620:CDS | 20.0% |
| !! | TCATTCTTTTCTTACAACAA+TGG | - | chr1_4:41858128-41858147 | Msa0163620:three_prime_UTR | 25.0% |
| ! | AGAATATGAAAACTATCCAT+TGG | + | chr1_4:41858704-41858723 | None:intergenic | 25.0% |
| !!! | ATATTGCTACTTTTTTCCTA+GGG | + | chr1_4:41858986-41859005 | None:intergenic | 25.0% |
| !!! | AATATTGCTACTTTTTTCCT+AGG | + | chr1_4:41858987-41859006 | None:intergenic | 25.0% |
| !!! | AAGTAGCAATATTTTTAGAG+TGG | - | chr1_4:41858994-41859013 | Msa0163620:intron | 25.0% |
| ! | AGTTGCTTAAATCATTGTAT+AGG | + | chr1_4:41859647-41859666 | None:intergenic | 25.0% |
| !! | CAAATTACAATTAGTTTCCA+AGG | - | chr1_4:41859941-41859960 | Msa0163620:intron | 25.0% |
| ! | AATTACAAATGTAATCCTGA+AGG | - | chr1_4:41860138-41860157 | Msa0163620:intron | 25.0% |
| ! | TATTTGTATTCGGAAATCAA+AGG | - | chr1_4:41860195-41860214 | Msa0163620:CDS | 25.0% |
| ! | TCATGACTAAAAACAATTGT+TGG | + | chr1_4:41860432-41860451 | None:intergenic | 25.0% |
| !!! | TATGTATCTGCCTTTTAATT+TGG | - | chr1_4:41860579-41860598 | Msa0163620:CDS | 25.0% |
| ! | TATAAAATCATCTATGTCCA+TGG | - | chr1_4:41860809-41860828 | Msa0163620:intron | 25.0% |
| ! | AAAACCAATGACATAGAATT+TGG | + | chr1_4:41861120-41861139 | None:intergenic | 25.0% |
| ! | ACTTATTAGAGTTTATCTAC+TGG | - | chr1_4:41861216-41861235 | Msa0163620:intron | 25.0% |
| !!! | TGTTTTGATATAAGCTATCT+TGG | + | chr1_4:41861331-41861350 | None:intergenic | 25.0% |
| ! | AACTACAAATAAGGTATGTT+TGG | + | chr1_4:41861431-41861450 | None:intergenic | 25.0% |
| ! | CAGTAATCACACTAAAATTT+GGG | + | chr1_4:41861661-41861680 | None:intergenic | 25.0% |
| ! | GGAAAATAAAGAGAATTATG+TGG | - | chr1_4:41861733-41861752 | Msa0163620:intron | 25.0% |
| ! | GAATATAAACACATGTATCA+CGG | + | chr1_4:41861879-41861898 | None:intergenic | 25.0% |
| ! | AAAAATAAACACATGCATCA+TGG | + | chr1_4:41861915-41861934 | None:intergenic | 25.0% |
| ! | TTCATGAATGACTTCAAAAA+CGG | + | chr1_4:41861966-41861985 | None:intergenic | 25.0% |
| ! | TATTATGCTCAATTGAATTG+AGG | + | chr1_4:41862278-41862297 | None:intergenic | 25.0% |
| !!! | ATAATATGTCTTGTTTCGAT+TGG | - | chr1_4:41862347-41862366 | Msa0163620:intron | 25.0% |
| ! | CGTGATTTAAATATTGGATT+TGG | - | chr1_4:41862464-41862483 | Msa0163620:intron | 25.0% |
| ! | TAAATATTGGATTTGGAAGA+TGG | - | chr1_4:41862471-41862490 | Msa0163620:intron | 25.0% |
| ! | AAATATTGGATTTGGAAGAT+GGG | - | chr1_4:41862472-41862491 | Msa0163620:intron | 25.0% |
| !!! | TGTTGTTTTTGAGATGTATT+TGG | - | chr1_4:41862896-41862915 | Msa0163620:intron | 25.0% |
| ! | TTCTCTTAACAAATGAATCA+AGG | + | chr1_4:41863096-41863115 | None:intergenic | 25.0% |
| ! | TGAATCTTTACATGATCAAT+AGG | - | chr1_4:41863184-41863203 | Msa0163620:five_prime_UTR | 25.0% |
| ! | AATTTTTCTACTAACTCCAG+TGG | + | chr1_4:41858154-41858173 | None:intergenic | 30.0% |
| CTGAAAAGAAGAAGATTTGT+TGG | + | chr1_4:41858211-41858230 | None:intergenic | 30.0% | |
| GATGAAGTTTATATACATGC+TGG | - | chr1_4:41858469-41858488 | Msa0163620:three_prime_UTR | 30.0% | |
| AGTATCAATCTTCAACTTGT+GGG | + | chr1_4:41858571-41858590 | None:intergenic | 30.0% | |
| AAGTATCAATCTTCAACTTG+TGG | + | chr1_4:41858572-41858591 | None:intergenic | 30.0% | |
| AATAGAAGCTTGTAATGAGA+TGG | - | chr1_4:41858599-41858618 | Msa0163620:CDS | 30.0% | |
| !! | CAAAACCTGTTTTTCATGAA+CGG | + | chr1_4:41858765-41858784 | None:intergenic | 30.0% |
| TGTAGAATGCTATGTAATCA+AGG | - | chr1_4:41858956-41858975 | Msa0163620:intron | 30.0% | |
| !!! | TATTGCTACTTTTTTCCTAG+GGG | + | chr1_4:41858985-41859004 | None:intergenic | 30.0% |
| CGGTTATAGTAATTCCAATT+GGG | + | chr1_4:41859039-41859058 | None:intergenic | 30.0% | |
| ACGGTTATAGTAATTCCAAT+TGG | + | chr1_4:41859040-41859059 | None:intergenic | 30.0% | |
| AATTCTTCTCTAGATCTACA+CGG | + | chr1_4:41859059-41859078 | None:intergenic | 30.0% | |
| ACATTTACTTAACGACCATT+AGG | + | chr1_4:41859216-41859235 | None:intergenic | 30.0% | |
| GCCATCTTAAAATTCTTTCT+GGG | + | chr1_4:41859407-41859426 | None:intergenic | 30.0% | |
| TGCCATCTTAAAATTCTTTC+TGG | + | chr1_4:41859408-41859427 | None:intergenic | 30.0% | |
| ATAAATGAGGAGGATTGTAT+AGG | - | chr1_4:41859517-41859536 | Msa0163620:intron | 30.0% | |
| TTTCCTTCATTGTGAGTTAA+AGG | + | chr1_4:41859729-41859748 | None:intergenic | 30.0% | |
| ! | TTGCCTTTGCTATCATTAAA+GGG | + | chr1_4:41859784-41859803 | None:intergenic | 30.0% |
| ! | ATTGCCTTTGCTATCATTAA+AGG | + | chr1_4:41859785-41859804 | None:intergenic | 30.0% |
| AGGAAATATTGAGACAATAG+AGG | - | chr1_4:41860075-41860094 | Msa0163620:intron | 30.0% | |
| !! | ACAATAGAGGTATTCATGAA+TGG | - | chr1_4:41860088-41860107 | Msa0163620:intron | 30.0% |
| AATGGAATTAGTGCAATTAG+AGG | - | chr1_4:41860106-41860125 | Msa0163620:intron | 30.0% | |
| TGTGAGTGTCTATTTGTATT+CGG | - | chr1_4:41860185-41860204 | Msa0163620:CDS | 30.0% | |
| AATTACATTATGCTGAACAC+AGG | + | chr1_4:41860499-41860518 | None:intergenic | 30.0% | |
| ! | ATTTGGAATTACAAACTCTC+AGG | - | chr1_4:41860596-41860615 | Msa0163620:CDS | 30.0% |
| !! | ACATTAGCAGTGTTGTTTAT+TGG | - | chr1_4:41860632-41860651 | Msa0163620:CDS | 30.0% |
| !! | CATTAGCAGTGTTGTTTATT+GGG | - | chr1_4:41860633-41860652 | Msa0163620:CDS | 30.0% |
| !! | ATTAGCAGTGTTGTTTATTG+GGG | - | chr1_4:41860634-41860653 | Msa0163620:CDS | 30.0% |
| ATAGAAAATTACGGGTGATA+GGG | + | chr1_4:41860873-41860892 | None:intergenic | 30.0% | |
| TATAGAAAATTACGGGTGAT+AGG | + | chr1_4:41860874-41860893 | None:intergenic | 30.0% | |
| TAATTCCTTAACAACATCCT+GGG | + | chr1_4:41860976-41860995 | None:intergenic | 30.0% | |
| AGGATGTTGTTAAGGAATTA+GGG | - | chr1_4:41860976-41860995 | Msa0163620:intron | 30.0% | |
| !!! | TATGTCATTGGTTTTTCCAT+GGG | - | chr1_4:41861125-41861144 | Msa0163620:intron | 30.0% |
| !!! | CTAACTTTTTCAATACTGAC+AGG | - | chr1_4:41861465-41861484 | Msa0163620:intron | 30.0% |
| ATGCAATTTCATTTGGGAAT+AGG | + | chr1_4:41861567-41861586 | None:intergenic | 30.0% | |
| TTGGTCATGCAATTTCATTT+GGG | + | chr1_4:41861573-41861592 | None:intergenic | 30.0% | |
| ATTGGTCATGCAATTTCATT+TGG | + | chr1_4:41861574-41861593 | None:intergenic | 30.0% | |
| AAATGAAATTGCATGACCAA+TGG | - | chr1_4:41861573-41861592 | Msa0163620:intron | 30.0% | |
| AATGAAATTGCATGACCAAT+GGG | - | chr1_4:41861574-41861593 | Msa0163620:intron | 30.0% | |
| CCAGTAATCACACTAAAATT+TGG | + | chr1_4:41861662-41861681 | None:intergenic | 30.0% | |
| !! | CCAAATTTTAGTGTGATTAC+TGG | - | chr1_4:41861659-41861678 | Msa0163620:intron | 30.0% |
| ! | CTTTTAGATGATCGCAAATT+TGG | - | chr1_4:41861767-41861786 | Msa0163620:intron | 30.0% |
| !! | ATTTTGCTGATCGTTTTGAT+TGG | - | chr1_4:41861821-41861840 | Msa0163620:intron | 30.0% |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr1_4:41862006-41862025 | None:intergenic | 30.0% | |
| AGCATTTATGAGACTGTTTA+TGG | - | chr1_4:41862043-41862062 | Msa0163620:intron | 30.0% | |
| AAATTATCTTGGAGAGCTTA+TGG | + | chr1_4:41862111-41862130 | None:intergenic | 30.0% | |
| ATCCAATATTTAAATCACGG+TGG | + | chr1_4:41862463-41862482 | None:intergenic | 30.0% | |
| AATCCATTTCCAAACAATGA+AGG | - | chr1_4:41862518-41862537 | Msa0163620:intron | 30.0% | |
| !!! | GCTATCATTAAGTCACTTTT+AGG | - | chr1_4:41862686-41862705 | Msa0163620:intron | 30.0% |
| ! | TGTGAAATAGGCTTTTGTAT+CGG | - | chr1_4:41862709-41862728 | Msa0163620:intron | 30.0% |
| GCTCAAAGTTTATCATATAG+AGG | + | chr1_4:41862808-41862827 | None:intergenic | 30.0% | |
| ATGATAAACTTTGAGCAATG+TGG | - | chr1_4:41862812-41862831 | Msa0163620:intron | 30.0% | |
| TGATAAACTTTGAGCAATGT+GGG | - | chr1_4:41862813-41862832 | Msa0163620:intron | 30.0% | |
| TCGTAAATGAATGCATTTGA+TGG | - | chr1_4:41863000-41863019 | Msa0163620:intron | 30.0% | |
| TAAATGAATGCATTTGATGG+AGG | - | chr1_4:41863003-41863022 | Msa0163620:intron | 30.0% | |
| !!! | TTATTTTCTTTCTAGGGTGA+GGG | - | chr1_4:41863056-41863075 | Msa0163620:intron | 30.0% |
| TAAGAGAAAATTCAATTGGG+AGG | - | chr1_4:41863108-41863127 | Msa0163620:CDS | 30.0% | |
| AAGAGAAAATTCAATTGGGA+GGG | - | chr1_4:41863109-41863128 | Msa0163620:CDS | 30.0% | |
| ACGACCCATTCAAATTTGAA+TGG | + | chr1_4:41858302-41858321 | None:intergenic | 35.0% | |
| GTTCTTCAGCTTTACAATTG+TGG | - | chr1_4:41858325-41858344 | Msa0163620:three_prime_UTR | 35.0% | |
| CTGTACTAGTTCAGTTAGTT+AGG | - | chr1_4:41858499-41858518 | Msa0163620:three_prime_UTR | 35.0% | |
| TATCAATCTTCAACTTGTGG+GGG | + | chr1_4:41858569-41858588 | None:intergenic | 35.0% | |
| GTATCAATCTTCAACTTGTG+GGG | + | chr1_4:41858570-41858589 | None:intergenic | 35.0% | |
| TCATGAGATTGATTGTCATG+CGG | + | chr1_4:41858734-41858753 | None:intergenic | 35.0% | |
| TTTGTCCGTTCATGAAAAAC+AGG | - | chr1_4:41858757-41858776 | Msa0163620:CDS | 35.0% | |
| ! | AAACAGGTTTTGCAGTATTG+TGG | - | chr1_4:41858773-41858792 | Msa0163620:CDS | 35.0% |
| TATAGTAATTCCAATTGGGC+TGG | + | chr1_4:41859035-41859054 | None:intergenic | 35.0% | |
| ! | TTCAGGGAATTTTCTTCAGT+GGG | + | chr1_4:41859082-41859101 | None:intergenic | 35.0% |
| !! | TTGAAAGGTTTACTGGTTCA+GGG | + | chr1_4:41859098-41859117 | None:intergenic | 35.0% |
| TCACTACTTGAAAGGTTTAC+TGG | + | chr1_4:41859105-41859124 | None:intergenic | 35.0% | |
| !! | ACTAGCCTTGGATAGAAATT+GGG | - | chr1_4:41859155-41859174 | Msa0163620:intron | 35.0% |
| CTCACTTTACTTTCTGTCTT+GGG | + | chr1_4:41859329-41859348 | None:intergenic | 35.0% | |
| !! | GCCCAGAAAGAATTTTAAGA+TGG | - | chr1_4:41859403-41859422 | Msa0163620:intron | 35.0% |
| TTATGCCAAAGTTGTTGTCA+AGG | - | chr1_4:41859435-41859454 | Msa0163620:intron | 35.0% | |
| AGTATCCTTGACAACAACTT+TGG | + | chr1_4:41859443-41859462 | None:intergenic | 35.0% | |
| TACAATCCTCCTCATTTATG+CGG | + | chr1_4:41859516-41859535 | None:intergenic | 35.0% | |
| ATAGGAGTAAGTTGTGATGT+TGG | - | chr1_4:41859535-41859554 | Msa0163620:intron | 35.0% | |
| GAATGCTAAGCTCAAATGTA+AGG | - | chr1_4:41859589-41859608 | Msa0163620:CDS | 35.0% | |
| GTATAGGCTAATACAGAGAA+TGG | + | chr1_4:41859631-41859650 | None:intergenic | 35.0% | |
| TTCATTGTGAGTTAAAGGAG+GGG | + | chr1_4:41859724-41859743 | None:intergenic | 35.0% | |
| CTTCATTGTGAGTTAAAGGA+GGG | + | chr1_4:41859725-41859744 | None:intergenic | 35.0% | |
| TTGCTAAAATGGCTACTATG+AGG | + | chr1_4:41859814-41859833 | None:intergenic | 35.0% | |
| !! | CATTTTAGCAACCTGACAAA+CGG | - | chr1_4:41859823-41859842 | Msa0163620:intron | 35.0% |
| TCTATTCTGGACAAACTTGT+TGG | + | chr1_4:41859921-41859940 | None:intergenic | 35.0% | |
| GAACAGAGAATTAAAAGCCT+TGG | + | chr1_4:41859961-41859980 | None:intergenic | 35.0% | |
| AGATGGATAGGATAAAGTAG+TGG | - | chr1_4:41860224-41860243 | Msa0163620:CDS | 35.0% | |
| ! | ATAGGATAAAGTAGTGGAGT+GGG | - | chr1_4:41860230-41860249 | Msa0163620:CDS | 35.0% |
| ! | ATGAGGAAGGATCTTTTGAA+TGG | - | chr1_4:41860292-41860311 | Msa0163620:CDS | 35.0% |
| ! | TGAGGAAGGATCTTTTGAAT+GGG | - | chr1_4:41860293-41860312 | Msa0163620:CDS | 35.0% |
| TGAATGGGAAAATCTTCTCA+TGG | - | chr1_4:41860308-41860327 | Msa0163620:intron | 35.0% | |
| TCTAGAGACTAGAAACTAAC+AGG | - | chr1_4:41860342-41860361 | Msa0163620:intron | 35.0% | |
| AACAAGACTCAGATGACTAT+AGG | - | chr1_4:41860372-41860391 | Msa0163620:intron | 35.0% | |
| ATCTCATATTAAGGCCAACA+GGG | + | chr1_4:41860461-41860480 | None:intergenic | 35.0% | |
| AATCTCATATTAAGGCCAAC+AGG | + | chr1_4:41860462-41860481 | None:intergenic | 35.0% | |
| !! | TTGATTCTTGGTGCTGTTAT+AGG | + | chr1_4:41860728-41860747 | None:intergenic | 35.0% |
| ! | CCATCTCTTAGTTTGATTCT+TGG | + | chr1_4:41860740-41860759 | None:intergenic | 35.0% |
| CCAAGAATCAAACTAAGAGA+TGG | - | chr1_4:41860737-41860756 | Msa0163620:intron | 35.0% | |
| GAATCAAACTAAGAGATGGA+AGG | - | chr1_4:41860741-41860760 | Msa0163620:intron | 35.0% | |
| CGCATTCTCATATTTCTTCA+TGG | - | chr1_4:41860921-41860940 | Msa0163620:intron | 35.0% | |
| CTAATTCCTTAACAACATCC+TGG | + | chr1_4:41860977-41860996 | None:intergenic | 35.0% | |
| CAGGATGTTGTTAAGGAATT+AGG | - | chr1_4:41860975-41860994 | Msa0163620:intron | 35.0% | |
| GGATGTTGTTAAGGAATTAG+GGG | - | chr1_4:41860977-41860996 | Msa0163620:intron | 35.0% | |
| ATTGTATCCTTTGATAGACC+TGG | - | chr1_4:41861005-41861024 | Msa0163620:intron | 35.0% | |
| ! | TTTAACGTACGATTTGGATC+GGG | + | chr1_4:41861047-41861066 | None:intergenic | 35.0% |
| ! | CTTTAACGTACGATTTGGAT+CGG | + | chr1_4:41861048-41861067 | None:intergenic | 35.0% |
| ATGCTCTTTAACGTACGATT+TGG | + | chr1_4:41861053-41861072 | None:intergenic | 35.0% | |
| !!! | CTATGTCATTGGTTTTTCCA+TGG | - | chr1_4:41861124-41861143 | Msa0163620:intron | 35.0% |
| TAAACACTTGTGAGACTGTT+AGG | - | chr1_4:41861241-41861260 | Msa0163620:intron | 35.0% | |
| AGACTGTTAGGAAGAGTTTA+TGG | - | chr1_4:41861253-41861272 | Msa0163620:intron | 35.0% | |
| TGATCTTCCTGCAAACTTAA+CGG | - | chr1_4:41861535-41861554 | Msa0163620:intron | 35.0% | |
| TTTCATTTGGGAATAGGCTT+CGG | + | chr1_4:41861561-41861580 | None:intergenic | 35.0% | |
| ! | AGAGCTTGTAACTAAGTTGA+TGG | - | chr1_4:41861712-41861731 | Msa0163620:intron | 35.0% |
| TCAAAAACGGAAGACATTGT+AGG | + | chr1_4:41861953-41861972 | None:intergenic | 35.0% | |
| CAATCGAACCTTCAAATTAG+TGG | - | chr1_4:41862169-41862188 | Msa0163620:intron | 35.0% | |
| ! | GAGGCTAATCTGAAATTTGA+AGG | + | chr1_4:41862259-41862278 | None:intergenic | 35.0% |
| CAATATTTAAATCACGGTGG+AGG | + | chr1_4:41862460-41862479 | None:intergenic | 35.0% | |
| CTCCACCGTGATTTAAATAT+TGG | - | chr1_4:41862458-41862477 | Msa0163620:intron | 35.0% | |
| AAGATGGGAATATACACCTT+TGG | - | chr1_4:41862487-41862506 | Msa0163620:intron | 35.0% | |
| !!! | AATGGATTTTGAAGCTCCAA+AGG | + | chr1_4:41862506-41862525 | None:intergenic | 35.0% |
| GAACCTTCATTGTTTGGAAA+TGG | + | chr1_4:41862524-41862543 | None:intergenic | 35.0% | |
| TGAACAGAACCTTCATTGTT+TGG | + | chr1_4:41862530-41862549 | None:intergenic | 35.0% | |
| ATGAAGGTTCTGTTCATCTT+TGG | - | chr1_4:41862534-41862553 | Msa0163620:intron | 35.0% | |
| !!! | GTCACTTTTAGGTGTGAAAT+AGG | - | chr1_4:41862697-41862716 | Msa0163620:intron | 35.0% |
| CATTTGATGGAGGATTGTTA+GGG | - | chr1_4:41863013-41863032 | Msa0163620:intron | 35.0% | |
| !!! | GTTATTTTCTTTCTAGGGTG+AGG | - | chr1_4:41863055-41863074 | Msa0163620:intron | 35.0% |
| !!! | TATTTTCTTTCTAGGGTGAG+GGG | - | chr1_4:41863057-41863076 | Msa0163620:intron | 35.0% |
| AGAGAAAATTCAATTGGGAG+GGG | - | chr1_4:41863110-41863129 | Msa0163620:CDS | 35.0% | |
| ACATGTTGGACATATAAGAC+AGG | + | chr1_4:41863140-41863159 | None:intergenic | 35.0% | |
| TTTCTTACAACAATGGCCAC+TGG | - | chr1_4:41858135-41858154 | Msa0163620:three_prime_UTR | 40.0% | |
| ! | TCTTCTTTTCAGCTTCCTTC+AGG | - | chr1_4:41858219-41858238 | Msa0163620:three_prime_UTR | 40.0% |
| TTTGGTGAAGATCGGATGTT+TGG | - | chr1_4:41858645-41858664 | Msa0163620:CDS | 40.0% | |
| ! | AGGTTTTGCAGTATTGTGGA+AGG | - | chr1_4:41858777-41858796 | Msa0163620:CDS | 40.0% |
| ATGTAATCAAGGAATCCCCT+AGG | - | chr1_4:41858967-41858986 | Msa0163620:intron | 40.0% | |
| !!! | ATTTTTAGAGTGGCGTGAGT+CGG | - | chr1_4:41859004-41859023 | Msa0163620:intron | 40.0% |
| ! | GTTCAGGGAATTTTCTTCAG+TGG | + | chr1_4:41859083-41859102 | None:intergenic | 40.0% |
| !! | CTTGAAAGGTTTACTGGTTC+AGG | + | chr1_4:41859099-41859118 | None:intergenic | 40.0% |
| !! | AAGGCTAGTGTGTCATTTCA+AGG | + | chr1_4:41859144-41859163 | None:intergenic | 40.0% |
| ! | TTGAAATGACACACTAGCCT+TGG | - | chr1_4:41859143-41859162 | Msa0163620:intron | 40.0% |
| !! | CACTAGCCTTGGATAGAAAT+TGG | - | chr1_4:41859154-41859173 | Msa0163620:intron | 40.0% |
| ACTCTCCCAATTTCTATCCA+AGG | + | chr1_4:41859163-41859182 | None:intergenic | 40.0% | |
| AAATTGGGAGAGTAGCTGAA+CGG | - | chr1_4:41859170-41859189 | Msa0163620:intron | 40.0% | |
| GGTTCCATAGAAGTTGAAAC+CGG | - | chr1_4:41859287-41859306 | Msa0163620:intron | 40.0% | |
| ! | CAAACCGGTTTCAACTTCTA+TGG | + | chr1_4:41859294-41859313 | None:intergenic | 40.0% |
| CCTCACTTTACTTTCTGTCT+TGG | + | chr1_4:41859330-41859349 | None:intergenic | 40.0% | |
| CCAAGACAGAAAGTAAAGTG+AGG | - | chr1_4:41859327-41859346 | Msa0163620:intron | 40.0% | |
| TGGCAAATGGAAATGCCTTT+AGG | - | chr1_4:41859362-41859381 | Msa0163620:intron | 40.0% | |
| TGTCAAGGATACTCTTGATC+CGG | - | chr1_4:41859450-41859469 | Msa0163620:intron | 40.0% | |
| TGCTAAGCTCAAATGTAAGG+TGG | - | chr1_4:41859592-41859611 | Msa0163620:CDS | 40.0% | |
| AGGGAAGAGTTCATGAAACT+TGG | - | chr1_4:41859681-41859700 | Msa0163620:CDS | 40.0% | |
| GGGAAGAGTTCATGAAACTT+GGG | - | chr1_4:41859682-41859701 | Msa0163620:CDS | 40.0% | |
| GGAAGAGTTCATGAAACTTG+GGG | - | chr1_4:41859683-41859702 | Msa0163620:CDS | 40.0% | |
| TCATTGTGAGTTAAAGGAGG+GGG | + | chr1_4:41859723-41859742 | None:intergenic | 40.0% | |
| CCTTCATTGTGAGTTAAAGG+AGG | + | chr1_4:41859726-41859745 | None:intergenic | 40.0% | |
| CCTCCTTTAACTCACAATGA+AGG | - | chr1_4:41859723-41859742 | Msa0163620:CDS | 40.0% | |
| GCACATTCAACAATGAAACG+TGG | + | chr1_4:41859759-41859778 | None:intergenic | 40.0% | |
| ! | CCTTTGCTATCATTAAAGGG+CGG | + | chr1_4:41859781-41859800 | None:intergenic | 40.0% |
| ! | CGTTTGTCAGGTTGCTAAAA+TGG | + | chr1_4:41859825-41859844 | None:intergenic | 40.0% |
| ! | ATTGATTTCCACCGTTTGTC+AGG | + | chr1_4:41859837-41859856 | None:intergenic | 40.0% |
| ACGGTGGAAATCAATCTCTT+CGG | - | chr1_4:41859842-41859861 | Msa0163620:intron | 40.0% | |
| AATGGGTGTAGAGAGTCAAA+AGG | + | chr1_4:41859878-41859897 | None:intergenic | 40.0% | |
| TGACTCTCTACACCCATTTA+CGG | - | chr1_4:41859880-41859899 | Msa0163620:intron | 40.0% | |
| TCGAAGTAGTTAGAGGATTC+AGG | - | chr1_4:41860014-41860033 | Msa0163620:intron | 40.0% | |
| CGAAGTAGTTAGAGGATTCA+GGG | - | chr1_4:41860015-41860034 | Msa0163620:intron | 40.0% | |
| ! | GGTAAAAGGCATAATCCTTG+TGG | - | chr1_4:41860048-41860067 | Msa0163620:intron | 40.0% |
| CAATATTTCCTCTAGCCACA+AGG | + | chr1_4:41860066-41860085 | None:intergenic | 40.0% | |
| GGAATTAGTGCAATTAGAGG+TGG | - | chr1_4:41860109-41860128 | Msa0163620:intron | 40.0% | |
| ATTAGTGCAATTAGAGGTGG+AGG | - | chr1_4:41860112-41860131 | Msa0163620:intron | 40.0% | |
| CAAATGTAATCCTGAAGGTG+TGG | - | chr1_4:41860143-41860162 | Msa0163620:intron | 40.0% | |
| CTTTATCCTATCCATCTTCC+TGG | + | chr1_4:41860221-41860240 | None:intergenic | 40.0% | |
| ! | GATAGGATAAAGTAGTGGAG+TGG | - | chr1_4:41860229-41860248 | Msa0163620:CDS | 40.0% |
| TGGGAAAATCTTCTCATGGA+AGG | - | chr1_4:41860312-41860331 | Msa0163620:intron | 40.0% | |
| ! | TGTTTATTGGGGTTCTAGCA+TGG | - | chr1_4:41860645-41860664 | Msa0163620:CDS | 40.0% |
| ! | GTTTATTGGGGTTCTAGCAT+GGG | - | chr1_4:41860646-41860665 | Msa0163620:CDS | 40.0% |
| !! | ATTCTTGGTGCTGTTATAGG+TGG | + | chr1_4:41860725-41860744 | None:intergenic | 40.0% |
| !! | ACTAAGAGATGGAAGGCATT+TGG | - | chr1_4:41860748-41860767 | Msa0163620:intron | 40.0% |
| CATTTGGCATACAAAGAGCA+TGG | - | chr1_4:41860764-41860783 | Msa0163620:intron | 40.0% | |
| TATTTAATGTGAGCTTGCCC+AGG | - | chr1_4:41860956-41860975 | Msa0163620:intron | 40.0% | |
| TCCTTTGATAGACCTGGTTA+CGG | - | chr1_4:41861011-41861030 | Msa0163620:intron | 40.0% | |
| GGCAAGCTCTTCTATATCTA+AGG | + | chr1_4:41861078-41861097 | None:intergenic | 40.0% | |
| GGGTCCAAATTCTATGTCAT+TGG | - | chr1_4:41861113-41861132 | Msa0163620:intron | 40.0% | |
| AACTCTAAATCGTACCTGTG+AGG | + | chr1_4:41861185-41861204 | None:intergenic | 40.0% | |
| AAGCTATCTTGGAGAGCTTA+TGG | + | chr1_4:41861320-41861339 | None:intergenic | 40.0% | |
| !!! | CTTTTTCAATACTGACAGGC+TGG | - | chr1_4:41861469-41861488 | Msa0163620:intron | 40.0% |
| GTTAAGTTTGCAGGAAGATC+AGG | + | chr1_4:41861536-41861555 | None:intergenic | 40.0% | |
| ! | TCTTGTTTCGAAAGGATGTC+TGG | + | chr1_4:41861689-41861708 | None:intergenic | 40.0% |
| !! | GCTCTTTGTCTTGTTTCGAA+AGG | + | chr1_4:41861697-41861716 | None:intergenic | 40.0% |
| TCATGAACAACTCACTGCTT+AGG | - | chr1_4:41861979-41861998 | Msa0163620:intron | 40.0% | |
| GTGGACAACCACTAATTTGA+AGG | + | chr1_4:41862180-41862199 | None:intergenic | 40.0% | |
| GAGAATCTGATGATCTGAAG+TGG | - | chr1_4:41862220-41862239 | Msa0163620:intron | 40.0% | |
| CAGAAGCAGATAAGACAACA+AGG | - | chr1_4:41862422-41862441 | Msa0163620:intron | 40.0% | |
| ATGTATCGTTGTAGTGTGAC+AGG | + | chr1_4:41862584-41862603 | None:intergenic | 40.0% | |
| ! | AGTTCATGGTAGTGAATCCA+CGG | + | chr1_4:41862620-41862639 | None:intergenic | 40.0% |
| ATTCACTACCATGAACTTCC+AGG | - | chr1_4:41862623-41862642 | Msa0163620:intron | 40.0% | |
| CAGAGAGTTCAAACTGAAGA+TGG | - | chr1_4:41862777-41862796 | Msa0163620:intron | 40.0% | |
| AAAGTGCATGTTCATGTAGG+TGG | + | chr1_4:41862952-41862971 | None:intergenic | 40.0% | |
| CACAAAGTGCATGTTCATGT+AGG | + | chr1_4:41862955-41862974 | None:intergenic | 40.0% | |
| GCATTTGATGGAGGATTGTT+AGG | - | chr1_4:41863012-41863031 | Msa0163620:intron | 40.0% | |
| ATCTCTATCGAGGAACATGT+TGG | + | chr1_4:41863154-41863173 | None:intergenic | 40.0% | |
| ACTGTGACTAATCTCTATCG+AGG | + | chr1_4:41863164-41863183 | None:intergenic | 40.0% | |
| !! | AGAAGATTTGTTGGCCCTTC+TGG | + | chr1_4:41858202-41858221 | None:intergenic | 45.0% |
| ! | TCTTTTCAGCTTCCTTCAGG+TGG | - | chr1_4:41858222-41858241 | Msa0163620:three_prime_UTR | 45.0% |
| ! | CTTTTCAGCTTCCTTCAGGT+GGG | - | chr1_4:41858223-41858242 | Msa0163620:three_prime_UTR | 45.0% |
| ATGAGATGGAAGAAATGCCC+AGG | - | chr1_4:41858613-41858632 | Msa0163620:CDS | 45.0% | |
| !! | AGGAGTGCTTTGGTGAAGAT+CGG | - | chr1_4:41858637-41858656 | Msa0163620:CDS | 45.0% |
| CAGCAGCTTCATGAATCCAA+TGG | - | chr1_4:41858685-41858704 | Msa0163620:CDS | 45.0% | |
| AGATTGATTGTCATGCGGTG+CGG | + | chr1_4:41858729-41858748 | None:intergenic | 45.0% | |
| AGCTCGCATCACTACTTGAA+AGG | + | chr1_4:41859113-41859132 | None:intergenic | 45.0% | |
| AATTGGGAGAGTAGCTGAAC+GGG | - | chr1_4:41859171-41859190 | Msa0163620:intron | 45.0% | |
| CGGGAAATGTGTGTGATATC+AGG | - | chr1_4:41859190-41859209 | Msa0163620:intron | 45.0% | |
| GTGTGTGATATCAGGCCTAA+TGG | - | chr1_4:41859198-41859217 | Msa0163620:intron | 45.0% | |
| TTCATCTGCACCACGATGAT+GGG | + | chr1_4:41859262-41859281 | None:intergenic | 45.0% | |
| TTTCATCTGCACCACGATGA+TGG | + | chr1_4:41859263-41859282 | None:intergenic | 45.0% | |
| TCGTGGTGCAGATGAAAACT+AGG | - | chr1_4:41859266-41859285 | Msa0163620:intron | 45.0% | |
| AAGTGAGGCAGTGTTGTAGT+TGG | - | chr1_4:41859342-41859361 | Msa0163620:intron | 45.0% | |
| GCAGTGTTGTAGTTGGCAAA+TGG | - | chr1_4:41859349-41859368 | Msa0163620:intron | 45.0% | |
| GTCAAGGATACTCTTGATCC+GGG | - | chr1_4:41859451-41859470 | Msa0163620:intron | 45.0% | |
| ATCCTCAACCTGGACAATGT+CGG | - | chr1_4:41859490-41859509 | Msa0163620:intron | 45.0% | |
| CAACTTGCAAACCCTGTGAA+GGG | - | chr1_4:41859662-41859681 | Msa0163620:CDS | 45.0% | |
| CATGAACTCTTCCCTTCACA+GGG | + | chr1_4:41859676-41859695 | None:intergenic | 45.0% | |
| TCATGAACTCTTCCCTTCAC+AGG | + | chr1_4:41859677-41859696 | None:intergenic | 45.0% | |
| CCGCCCTTTAATGATAGCAA+AGG | - | chr1_4:41859778-41859797 | Msa0163620:intron | 45.0% | |
| TTTAGCAACCTGACAAACGG+TGG | - | chr1_4:41859826-41859845 | Msa0163620:intron | 45.0% | |
| CACTTCTATCGGCCGTAAAT+GGG | + | chr1_4:41859895-41859914 | None:intergenic | 45.0% | |
| TCACTTCTATCGGCCGTAAA+TGG | + | chr1_4:41859896-41859915 | None:intergenic | 45.0% | |
| CTTGTTGGCGTCACTTCTAT+CGG | + | chr1_4:41859906-41859925 | None:intergenic | 45.0% | |
| TTCTTAGCCTCAACCCAACA+TGG | - | chr1_4:41859978-41859997 | Msa0163620:intron | 45.0% | |
| TCTTAGCCTCAACCCAACAT+GGG | - | chr1_4:41859979-41859998 | Msa0163620:intron | 45.0% | |
| ! | AGGGATAGCATCGAGGTAAA+AGG | - | chr1_4:41860034-41860053 | Msa0163620:intron | 45.0% |
| ! | ATGTAATCCTGAAGGTGTGG+TGG | - | chr1_4:41860146-41860165 | Msa0163620:intron | 45.0% |
| !! | AAGGTGTGGTGGTGGTTTAT+GGG | - | chr1_4:41860157-41860176 | Msa0163620:intron | 45.0% |
| GTATTCGGAAATCAAAGGCC+AGG | - | chr1_4:41860200-41860219 | Msa0163620:CDS | 45.0% | |
| GAAATCAAAGGCCAGGAAGA+TGG | - | chr1_4:41860207-41860226 | Msa0163620:CDS | 45.0% | |
| AGTCATGAATCAGTCCCTGT+TGG | - | chr1_4:41860444-41860463 | Msa0163620:CDS | 45.0% | |
| TCAGGAGAGCCACATACTTT+GGG | + | chr1_4:41860698-41860717 | None:intergenic | 45.0% | |
| ATCAGGAGAGCCACATACTT+TGG | + | chr1_4:41860699-41860718 | None:intergenic | 45.0% | |
| AAAGTATGTGGCTCTCCTGA+TGG | - | chr1_4:41860698-41860717 | Msa0163620:intron | 45.0% | |
| TCCATGGTATCAACACTTGC+AGG | - | chr1_4:41860825-41860844 | Msa0163620:intron | 45.0% | |
| AATTACGGGTGATAGGGTGT+TGG | + | chr1_4:41860867-41860886 | None:intergenic | 45.0% | |
| TCCGTAACCAGGTCTATCAA+AGG | + | chr1_4:41861015-41861034 | None:intergenic | 45.0% | |
| AGAAGAGCTTGCCGATCAAT+TGG | - | chr1_4:41861085-41861104 | Msa0163620:intron | 45.0% | |
| GAAGAGCTTGCCGATCAATT+GGG | - | chr1_4:41861086-41861105 | Msa0163620:intron | 45.0% | |
| CTTGCCGATCAATTGGGATT+GGG | - | chr1_4:41861092-41861111 | Msa0163620:intron | 45.0% | |
| TTGCCGATCAATTGGGATTG+GGG | - | chr1_4:41861093-41861112 | Msa0163620:intron | 45.0% | |
| !!! | GTCATTGGTTTTTCCATGGG+TGG | - | chr1_4:41861128-41861147 | Msa0163620:intron | 45.0% |
| CCAAACAATTTGTCCACCCA+TGG | + | chr1_4:41861144-41861163 | None:intergenic | 45.0% | |
| CCATGGGTGGACAAATTGTT+TGG | - | chr1_4:41861141-41861160 | Msa0163620:intron | 45.0% | |
| ACCTGTGAGGTATGTGCTTA+AGG | + | chr1_4:41861172-41861191 | None:intergenic | 45.0% | |
| TTCCACCAGTATGTTAGCCA+TGG | + | chr1_4:41861623-41861642 | None:intergenic | 45.0% | |
| ACTGGTGGAACACTCAAAGA+TGG | - | chr1_4:41861633-41861652 | Msa0163620:intron | 45.0% | |
| GGTTCTGTTCATCTTTGGCA+TGG | - | chr1_4:41862539-41862558 | Msa0163620:intron | 45.0% | |
| TACCATGAACTTCCAGGATC+TGG | - | chr1_4:41862629-41862648 | Msa0163620:intron | 45.0% | |
| CACTCACACCATCAGCATTA+GGG | + | chr1_4:41862664-41862683 | None:intergenic | 45.0% | |
| TCACTCACACCATCAGCATT+AGG | + | chr1_4:41862665-41862684 | None:intergenic | 45.0% | |
| ! | TAATGCTGATGGTGTGAGTG+AGG | - | chr1_4:41862664-41862683 | Msa0163620:intron | 45.0% |
| !! | TAGGCTTTTGTATCGGTCAC+CGG | - | chr1_4:41862716-41862735 | Msa0163620:intron | 45.0% |
| ATAAATGCCGACGCTAACAC+CGG | + | chr1_4:41862746-41862765 | None:intergenic | 45.0% | |
| ! | GCGTCGGCATTTATCATCTT+TGG | - | chr1_4:41862752-41862771 | Msa0163620:intron | 45.0% |
| !! | AATTATAATATAGAAAATTA+CGG | + | chr1_4:41860882-41860901 | None:intergenic | 5.0% |
| AGCTCGTTCTCACACCAGAA+GGG | - | chr1_4:41858185-41858204 | Msa0163620:three_prime_UTR | 50.0% | |
| AAGAGCTAAGACCCACCTGA+AGG | + | chr1_4:41858237-41858256 | None:intergenic | 50.0% | |
| GATGGAAGAAATGCCCAGGA+AGG | - | chr1_4:41858617-41858636 | Msa0163620:CDS | 50.0% | |
| ! | TCACCAAAGCACTCCTTCCT+GGG | + | chr1_4:41858633-41858652 | None:intergenic | 50.0% |
| ! | TTCACCAAAGCACTCCTTCC+TGG | + | chr1_4:41858634-41858653 | None:intergenic | 50.0% |
| CAGCCACTGCAATTCACAAG+TGG | - | chr1_4:41858876-41858895 | Msa0163620:intron | 50.0% | |
| CAGCCACTTGTGAATTGCAG+TGG | + | chr1_4:41858882-41858901 | None:intergenic | 50.0% | |
| TTGAAAAGGGCCCATCATCG+TGG | - | chr1_4:41859249-41859268 | Msa0163620:intron | 50.0% | |
| !! | TTGAAACCGGTTTGCTGCCA+AGG | - | chr1_4:41859300-41859319 | Msa0163620:intron | 50.0% |
| GACGTTGCTCACTCACCTAA+AGG | + | chr1_4:41859380-41859399 | None:intergenic | 50.0% | |
| TAGGTGAGTGAGCAACGTCA+AGG | - | chr1_4:41859381-41859400 | Msa0163620:intron | 50.0% | |
| ATCATCTTTCCGAGCTCTCC+CGG | + | chr1_4:41859472-41859491 | None:intergenic | 50.0% | |
| CGGAAAGATGATCCTCAACC+TGG | - | chr1_4:41859480-41859499 | Msa0163620:intron | 50.0% | |
| CAATGTCGGCCGCATAAATG+AGG | - | chr1_4:41859504-41859523 | Msa0163620:intron | 50.0% | |
| GCAACTTGCAAACCCTGTGA+AGG | - | chr1_4:41859661-41859680 | Msa0163620:CDS | 50.0% | |
| AGTTCATGAAACTTGGGGCG+TGG | - | chr1_4:41859688-41859707 | Msa0163620:CDS | 50.0% | |
| CCTCTAACTACTTCGAAGCC+AGG | + | chr1_4:41860010-41860029 | None:intergenic | 50.0% | |
| CCTGGCTTCGAAGTAGTTAG+AGG | - | chr1_4:41860007-41860026 | Msa0163620:intron | 50.0% | |
| AGGATTCAGGGATAGCATCG+AGG | - | chr1_4:41860027-41860046 | Msa0163620:intron | 50.0% | |
| GGCATAATCCTTGTGGCTAG+AGG | - | chr1_4:41860055-41860074 | Msa0163620:intron | 50.0% | |
| AGTGCAATTAGAGGTGGAGG+AGG | - | chr1_4:41860115-41860134 | Msa0163620:intron | 50.0% | |
| ! | TAATCCTGAAGGTGTGGTGG+TGG | - | chr1_4:41860149-41860168 | Msa0163620:intron | 50.0% |
| TAAACCACCACCACACCTTC+AGG | + | chr1_4:41860156-41860175 | None:intergenic | 50.0% | |
| !! | GAAGGTGTGGTGGTGGTTTA+TGG | - | chr1_4:41860156-41860175 | Msa0163620:intron | 50.0% |
| CAAAGGCCAGGAAGATGGAT+AGG | - | chr1_4:41860212-41860231 | Msa0163620:CDS | 50.0% | |
| CTGGGAAGAGGTTCCAACAT+TGG | - | chr1_4:41860260-41860279 | Msa0163620:CDS | 50.0% | |
| !! | AGAGGTTCCAACATTGGCTC+TGG | - | chr1_4:41860266-41860285 | Msa0163620:CDS | 50.0% |
| !! | GAGGTTCCAACATTGGCTCT+GGG | - | chr1_4:41860267-41860286 | Msa0163620:CDS | 50.0% |
| TCATCACCCAGAGCCAATGT+TGG | + | chr1_4:41860276-41860295 | None:intergenic | 50.0% | |
| !! | AACATTGGCTCTGGGTGATG+AGG | - | chr1_4:41860275-41860294 | Msa0163620:CDS | 50.0% |
| GCTGTTATAGGTGGTCCATC+AGG | + | chr1_4:41860716-41860735 | None:intergenic | 50.0% | |
| !! | GCCTGCAAGTGTTGATACCA+TGG | + | chr1_4:41860829-41860848 | None:intergenic | 50.0% |
| GCTTGCCCAGGATGTTGTTA+AGG | - | chr1_4:41860968-41860987 | Msa0163620:intron | 50.0% | |
| GGATCACTTTCTCCGTAACC+AGG | + | chr1_4:41861026-41861045 | None:intergenic | 50.0% | |
| GCTTGCCGATCAATTGGGAT+TGG | - | chr1_4:41861091-41861110 | Msa0163620:intron | 50.0% | |
| GGACCCCAATCCCAATTGAT+CGG | + | chr1_4:41861099-41861118 | None:intergenic | 50.0% | |
| GCCTTAAGCACATACCTCAC+AGG | - | chr1_4:41861168-41861187 | Msa0163620:intron | 50.0% | |
| TTCAATACTGACAGGCTGGC+AGG | - | chr1_4:41861473-41861492 | Msa0163620:intron | 50.0% | |
| TAGCTCCAGTCGTCAACTAC+TGG | - | chr1_4:41861507-41861526 | Msa0163620:intron | 50.0% | |
| ACACGCCATGGCTAACATAC+TGG | - | chr1_4:41861615-41861634 | Msa0163620:intron | 50.0% | |
| CTCACTGCTTAGGACCTGTT+TGG | - | chr1_4:41861989-41862008 | Msa0163620:intron | 50.0% | |
| ! | CATGGTAGTGAATCCACGGA+AGG | + | chr1_4:41862616-41862635 | None:intergenic | 50.0% |
| CATCAGCATTAGGGAAGAGG+TGG | + | chr1_4:41862655-41862674 | None:intergenic | 50.0% | |
| CACCTCTTCCCTAATGCTGA+TGG | - | chr1_4:41862653-41862672 | Msa0163620:intron | 50.0% | |
| CACCATCAGCATTAGGGAAG+AGG | + | chr1_4:41862658-41862677 | None:intergenic | 50.0% | |
| ! | CTTTGAGCAATGTGGGCTGT+AGG | - | chr1_4:41862820-41862839 | Msa0163620:intron | 50.0% |
| !! | TTTCTAGGGTGAGGGGTATG+CGG | - | chr1_4:41863064-41863083 | Msa0163620:CDS | 50.0% |
| !! | TCAATAGGCGCCTTGCTGTT+AGG | - | chr1_4:41863199-41863218 | Msa0163620:five_prime_UTR | 50.0% |
| CAGCTCGTTCTCACACCAGA+AGG | - | chr1_4:41858184-41858203 | Msa0163620:three_prime_UTR | 55.0% | |
| !! | ATGCCCAGGAAGGAGTGCTT+TGG | - | chr1_4:41858627-41858646 | Msa0163620:CDS | 55.0% |
| GTCGGAACAACCAGCCCAAT+TGG | - | chr1_4:41859022-41859041 | Msa0163620:intron | 55.0% | |
| CTTTCTGTCTTGGGCGTCCT+TGG | + | chr1_4:41859320-41859339 | None:intergenic | 55.0% | |
| ACTCTTGATCCGGGAGAGCT+CGG | - | chr1_4:41859460-41859479 | Msa0163620:intron | 55.0% | |
| TTATGCGGCCGACATTGTCC+AGG | + | chr1_4:41859501-41859520 | None:intergenic | 55.0% | |
| TGTCGGCCGCATAAATGAGG+AGG | - | chr1_4:41859507-41859526 | Msa0163620:intron | 55.0% | |
| ! | GAAGCACCCATGTTGGGTTG+AGG | + | chr1_4:41859988-41860007 | None:intergenic | 55.0% |
| AACCCAACATGGGTGCTTCC+TGG | - | chr1_4:41859989-41860008 | Msa0163620:intron | 55.0% | |
| !! | AGCCAGGAAGCACCCATGTT+GGG | + | chr1_4:41859994-41860013 | None:intergenic | 55.0% |
| !! | AAGCCAGGAAGCACCCATGT+TGG | + | chr1_4:41859995-41860014 | None:intergenic | 55.0% |
| TAGTGGAGTGGGAGAAGAGC+TGG | - | chr1_4:41860241-41860260 | Msa0163620:CDS | 55.0% | |
| AGTGGAGTGGGAGAAGAGCT+GGG | - | chr1_4:41860242-41860261 | Msa0163620:CDS | 55.0% | |
| !! | TTGGCTCTGGGTGATGAGGA+AGG | - | chr1_4:41860279-41860298 | Msa0163620:CDS | 55.0% |
| GCTCCTCCTCCCAAAGTATG+TGG | - | chr1_4:41860686-41860705 | Msa0163620:intron | 55.0% | |
| ! | GAGCCACATACTTTGGGAGG+AGG | + | chr1_4:41860692-41860711 | None:intergenic | 55.0% |
| GGAGAGCCACATACTTTGGG+AGG | + | chr1_4:41860695-41860714 | None:intergenic | 55.0% | |
| CACTTGCAGGCATGACGCTT+TGG | - | chr1_4:41860838-41860857 | Msa0163620:intron | 55.0% | |
| CTCCAGTCGTCAACTACTGG+TGG | - | chr1_4:41861510-41861529 | Msa0163620:intron | 55.0% | |
| GCTTCGGCCGTTAAGTTTGC+AGG | + | chr1_4:41861545-41861564 | None:intergenic | 55.0% | |
| CGCCATGGCTAACATACTGG+TGG | - | chr1_4:41861618-41861637 | Msa0163620:intron | 55.0% | |
| ACATCGCGCAAAACCTTCCG+TGG | - | chr1_4:41862600-41862619 | Msa0163620:intron | 55.0% | |
| GGCCAGATCCTGGAAGTTCA+TGG | + | chr1_4:41862634-41862653 | None:intergenic | 55.0% | |
| ! | TGTATCGGTCACCGGCTATC+CGG | - | chr1_4:41862724-41862743 | Msa0163620:intron | 55.0% |
| GGCCGACATTGTCCAGGTTG+AGG | + | chr1_4:41859495-41859514 | None:intergenic | 60.0% | |
| GTGGGAGAAGAGCTGGGAAG+AGG | - | chr1_4:41860248-41860267 | Msa0163620:CDS | 60.0% | |
| GGCCACCAGTAGTTGACGAC+TGG | + | chr1_4:41861515-41861534 | None:intergenic | 60.0% | |
| GTGTTGCGCACTACACGCCA+TGG | - | chr1_4:41861603-41861622 | Msa0163620:intron | 60.0% | |
| CGACGCTAACACCGGATAGC+CGG | + | chr1_4:41862738-41862757 | None:intergenic | 60.0% | |
| ! | CGGCTATCCGGTGTTAGCGT+CGG | - | chr1_4:41862736-41862755 | Msa0163620:intron | 60.0% |
| GGGCGTCCTTGGCAGCAAAC+CGG | + | chr1_4:41859309-41859328 | None:intergenic | 65.0% | |
| ! | GCGCAACACGAAGCGCCCAT+TGG | + | chr1_4:41861592-41861611 | None:intergenic | 65.0% |
| GGGAAGAGGTGGCCAGATCC+TGG | + | chr1_4:41862644-41862663 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 41858076 | 41863222 | 41858076 | ID=Msa0163620;Name=Msa0163620 |
| chr1_4 | mRNA | 41858076 | 41863222 | 41858076 | ID=Msa0163620-mRNA-1;Parent=Msa0163620;Name=Msa0163620-mRNA-1;_AED=0.28;_eAED=0.28;_QI=71|0.75|0.6|1|1|1|5|504|350 |
| chr1_4 | exon | 41858076 | 41858873 | 41858076 | ID=Msa0163620-mRNA-1:exon:12118;Parent=Msa0163620-mRNA-1 |
| chr1_4 | exon | 41859544 | 41859788 | 41859544 | ID=Msa0163620-mRNA-1:exon:12117;Parent=Msa0163620-mRNA-1 |
| chr1_4 | exon | 41860164 | 41860320 | 41860164 | ID=Msa0163620-mRNA-1:exon:12116;Parent=Msa0163620-mRNA-1 |
| chr1_4 | exon | 41860418 | 41860680 | 41860418 | ID=Msa0163620-mRNA-1:exon:12115;Parent=Msa0163620-mRNA-1 |
| chr1_4 | exon | 41863058 | 41863222 | 41863058 | ID=Msa0163620-mRNA-1:exon:12114;Parent=Msa0163620-mRNA-1 |
| chr1_4 | five_prime_UTR | 41863152 | 41863222 | 41863152 | ID=Msa0163620-mRNA-1:five_prime_utr;Parent=Msa0163620-mRNA-1 |
| chr1_4 | CDS | 41863058 | 41863151 | 41863058 | ID=Msa0163620-mRNA-1:cds;Parent=Msa0163620-mRNA-1 |
| chr1_4 | CDS | 41860418 | 41860680 | 41860418 | ID=Msa0163620-mRNA-1:cds;Parent=Msa0163620-mRNA-1 |
| chr1_4 | CDS | 41860164 | 41860320 | 41860164 | ID=Msa0163620-mRNA-1:cds;Parent=Msa0163620-mRNA-1 |
| chr1_4 | CDS | 41859544 | 41859788 | 41859544 | ID=Msa0163620-mRNA-1:cds;Parent=Msa0163620-mRNA-1 |
| chr1_4 | CDS | 41858580 | 41858873 | 41858580 | ID=Msa0163620-mRNA-1:cds;Parent=Msa0163620-mRNA-1 |
| chr1_4 | three_prime_UTR | 41858076 | 41858579 | 41858076 | ID=Msa0163620-mRNA-1:three_prime_utr;Parent=Msa0163620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
