Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363170 | XP_013459310.1 | 99.329 | 298 | 2 | 0 | 16 | 313 | 26 | 323 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363170 | sp|O24646|HY5_ARATH | 72.519 | 131 | 35 | 1 | 181 | 310 | 33 | 163 | 1.32e-54 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363170 | A0A072UVE3 | 99.329 | 298 | 2 | 0 | 16 | 313 | 26 | 323 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0363170 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0363170 | -0.861328 | 1.108407e-63 | -8.615850e-47 |
| Msa0000590 | Msa0363170 | 0.803944 | 2.737029e-49 | -8.615850e-47 |
| Msa0036370 | Msa0363170 | 0.803736 | 3.023056e-49 | -8.615850e-47 |
| Msa0038020 | Msa0363170 | 0.817287 | 3.566219e-52 | -8.615850e-47 |
| Msa0043730 | Msa0363170 | 0.807842 | 4.148135e-50 | -8.615850e-47 |
| Msa0072170 | Msa0363170 | 0.802623 | 5.138518e-49 | -8.615850e-47 |
| Msa0085720 | Msa0363170 | 0.842186 | 3.015234e-58 | -8.615850e-47 |
| Msa0090030 | Msa0363170 | 0.820662 | 6.092157e-53 | -8.615850e-47 |
| Msa0099510 | Msa0363170 | 0.804519 | 2.077823e-49 | -8.615850e-47 |
| Msa0108850 | Msa0363170 | 0.815648 | 8.299597e-52 | -8.615850e-47 |
| Msa0120370 | Msa0363170 | -0.826850 | 2.163230e-54 | -8.615850e-47 |
| Msa0120540 | Msa0363170 | 0.804984 | 1.661126e-49 | -8.615850e-47 |
| Msa0140170 | Msa0363170 | 0.833933 | 4.010879e-56 | -8.615850e-47 |
| Msa0140400 | Msa0363170 | 0.802790 | 4.745320e-49 | -8.615850e-47 |
| Msa0148120 | Msa0363170 | 0.807322 | 5.350051e-50 | -8.615850e-47 |
| Msa0151950 | Msa0363170 | 0.804696 | 1.908360e-49 | -8.615850e-47 |
| Msa0163560 | Msa0363170 | 0.820678 | 6.042058e-53 | -8.615850e-47 |
| Msa0163620 | Msa0363170 | -0.810974 | 8.824475e-51 | -8.615850e-47 |
| Msa0173330 | Msa0363170 | 0.850197 | 1.984639e-60 | -8.615850e-47 |
| Msa0175050 | Msa0363170 | 0.820118 | 8.119041e-53 | -8.615850e-47 |
| Msa0194720 | Msa0363170 | 0.823465 | 1.365414e-53 | -8.615850e-47 |
| Msa0196020 | Msa0363170 | -0.803671 | 3.119174e-49 | -8.615850e-47 |
| Msa0198940 | Msa0363170 | 0.842660 | 2.257676e-58 | -8.615850e-47 |
| Msa0208810 | Msa0363170 | 0.839744 | 1.318956e-57 | -8.615850e-47 |
| Msa0212750 | Msa0363170 | -0.804789 | 1.824733e-49 | -8.615850e-47 |
| Msa0223100 | Msa0363170 | 0.860450 | 2.048778e-63 | -8.615850e-47 |
| Msa0223290 | Msa0363170 | 0.865038 | 7.887228e-65 | -8.615850e-47 |
| Msa0223380 | Msa0363170 | 0.848213 | 7.072719e-60 | -8.615850e-47 |
| Msa0239940 | Msa0363170 | 0.846736 | 1.801188e-59 | -8.615850e-47 |
| Msa0241740 | Msa0363170 | 0.849240 | 3.672500e-60 | -8.615850e-47 |
| Msa0250670 | Msa0363170 | 0.818723 | 1.689333e-52 | -8.615850e-47 |
| Msa0252240 | Msa0363170 | 0.801451 | 8.950523e-49 | -8.615850e-47 |
| Msa0266210 | Msa0363170 | 0.862281 | 5.664107e-64 | -8.615850e-47 |
| Msa0268090 | Msa0363170 | 0.804559 | 2.038481e-49 | -8.615850e-47 |
| Msa0275400 | Msa0363170 | -0.827579 | 1.446998e-54 | -8.615850e-47 |
| Msa0279210 | Msa0363170 | -0.810561 | 1.084060e-50 | -8.615850e-47 |
| Msa0287670 | Msa0363170 | 0.867854 | 1.006790e-65 | -8.615850e-47 |
| Msa0288320 | Msa0363170 | 0.825680 | 4.107721e-54 | -8.615850e-47 |
| Msa0288730 | Msa0363170 | 0.837790 | 4.222772e-57 | -8.615850e-47 |
| Msa0289400 | Msa0363170 | 0.845911 | 3.022681e-59 | -8.615850e-47 |
| Msa0302650 | Msa0363170 | 0.870935 | 1.001753e-66 | -8.615850e-47 |
| Msa0308200 | Msa0363170 | 0.840899 | 6.583130e-58 | -8.615850e-47 |
| Msa0308220 | Msa0363170 | 0.833334 | 5.661905e-56 | -8.615850e-47 |
| Msa0312310 | Msa0363170 | 0.840388 | 8.960852e-58 | -8.615850e-47 |
| Msa0314120 | Msa0363170 | 0.819289 | 1.256096e-52 | -8.615850e-47 |
| Msa0320610 | Msa0363170 | 0.824586 | 7.451363e-54 | -8.615850e-47 |
| Msa0327410 | Msa0363170 | 0.803049 | 4.196828e-49 | -8.615850e-47 |
| Msa0328380 | Msa0363170 | 0.817855 | 2.655684e-52 | -8.615850e-47 |
| Msa0362060 | Msa0363170 | 0.879685 | 1.018705e-69 | -8.615850e-47 |
| Msa0363100 | Msa0363170 | 0.941636 | 2.942890e-101 | -8.615850e-47 |
| Msa0363170 | Msa0365490 | 0.803627 | 3.185177e-49 | -8.615850e-47 |
| Msa0363170 | Msa0370310 | 0.842723 | 2.172014e-58 | -8.615850e-47 |
| Msa0363170 | Msa0370870 | 0.895196 | 1.205554e-75 | -8.615850e-47 |
| Msa0363170 | Msa0377530 | 0.858674 | 7.004193e-63 | -8.615850e-47 |
| Msa0363170 | Msa0379540 | 0.810526 | 1.103244e-50 | -8.615850e-47 |
| Msa0363170 | Msa0381220 | 0.801040 | 1.086224e-48 | -8.615850e-47 |
| Msa0363170 | Msa0387910 | 0.807778 | 4.280626e-50 | -8.615850e-47 |
| Msa0363170 | Msa0388030 | -0.862386 | 5.258407e-64 | -8.615850e-47 |
| Msa0363170 | Msa0388040 | -0.800821 | 1.204169e-48 | -8.615850e-47 |
| Msa0363170 | Msa0388710 | 0.805723 | 1.163012e-49 | -8.615850e-47 |
| Msa0363170 | Msa0389810 | 0.811647 | 6.307058e-51 | -8.615850e-47 |
| Msa0363170 | Msa0394410 | -0.805937 | 1.048952e-49 | -8.615850e-47 |
| Msa0363170 | Msa0404220 | 0.831887 | 1.293992e-55 | -8.615850e-47 |
| Msa0363170 | Msa0404700 | 0.986400 | 1.164232e-166 | -8.615850e-47 |
| Msa0363170 | Msa0416320 | 0.865875 | 4.300408e-65 | -8.615850e-47 |
| Msa0363170 | Msa0419050 | 0.837997 | 3.736333e-57 | -8.615850e-47 |
| Msa0363170 | Msa0426810 | 0.870795 | 1.113616e-66 | -8.615850e-47 |
| Msa0363170 | Msa0436190 | 0.805086 | 1.581483e-49 | -8.615850e-47 |
| Msa0363170 | Msa0442250 | 0.814265 | 1.682222e-51 | -8.615850e-47 |
| Msa0363170 | Msa0442650 | 0.802026 | 6.819747e-49 | -8.615850e-47 |
| Msa0363170 | Msa0462540 | 0.950164 | 2.894972e-108 | -8.615850e-47 |
| Msa0363170 | Msa0464420 | 0.824898 | 6.288505e-54 | -8.615850e-47 |
| Msa0363170 | Msa0464900 | 0.876338 | 1.511587e-68 | -8.615850e-47 |
| Msa0363170 | Msa0465920 | 0.808896 | 2.471822e-50 | -8.615850e-47 |
| Msa0363170 | Msa0468130 | 0.830313 | 3.151114e-55 | -8.615850e-47 |
| Msa0363170 | Msa0471790 | 0.807740 | 4.359962e-50 | -8.615850e-47 |
| Msa0363170 | Msa0473240 | 0.807148 | 5.822350e-50 | -8.615850e-47 |
| Msa0363170 | Msa0489610 | 0.820224 | 7.679477e-53 | -8.615850e-47 |
| Msa0363170 | Msa0491500 | 0.801246 | 9.858442e-49 | -8.615850e-47 |
| Msa0363170 | Msa0491520 | 0.812440 | 4.234990e-51 | -8.615850e-47 |
| Msa0363170 | Msa0493920 | 0.803647 | 3.155415e-49 | -8.615850e-47 |
| Msa0363170 | Msa0505060 | 0.840661 | 7.602318e-58 | -8.615850e-47 |
| Msa0363170 | Msa0510040 | 0.825888 | 3.667254e-54 | -8.615850e-47 |
| Msa0363170 | Msa0510560 | 0.846547 | 2.028451e-59 | -8.615850e-47 |
| Msa0363170 | Msa0517490 | 0.852385 | 4.778626e-61 | -8.615850e-47 |
| Msa0363170 | Msa0519390 | 0.826966 | 2.029593e-54 | -8.615850e-47 |
| Msa0363170 | Msa0524600 | 0.807459 | 5.002272e-50 | -8.615850e-47 |
| Msa0363170 | Msa0527980 | -0.810182 | 1.308785e-50 | -8.615850e-47 |
| Msa0363170 | Msa0530380 | 0.809716 | 1.649492e-50 | -8.615850e-47 |
| Msa0363170 | Msa0547400 | 0.819323 | 1.233683e-52 | -8.615850e-47 |
| Msa0363170 | Msa0557950 | -0.815822 | 7.591334e-52 | -8.615850e-47 |
| Msa0363170 | Msa0565620 | -0.818166 | 2.258747e-52 | -8.615850e-47 |
| Msa0363170 | Msa0578090 | 0.803131 | 4.035051e-49 | -8.615850e-47 |
| Msa0363170 | Msa0579340 | 0.800679 | 1.287297e-48 | -8.615850e-47 |
| Msa0363170 | Msa0579370 | 0.804178 | 2.447250e-49 | -8.615850e-47 |
| Msa0363170 | Msa0581920 | 0.814619 | 1.404873e-51 | -8.615850e-47 |
| Msa0363170 | Msa0587190 | 0.804687 | 1.916853e-49 | -8.615850e-47 |
| Msa0363170 | Msa0598560 | 0.820872 | 5.452481e-53 | -8.615850e-47 |
| Msa0363170 | Msa0602120 | 0.814297 | 1.655417e-51 | -8.615850e-47 |
| Msa0363170 | Msa0609970 | 0.841292 | 5.190376e-58 | -8.615850e-47 |
| Msa0363170 | Msa0614990 | 0.839214 | 1.810982e-57 | -8.615850e-47 |
| Msa0363170 | Msa0622340 | 0.832494 | 9.157227e-56 | -8.615850e-47 |
| Msa0363170 | Msa0643250 | 0.831852 | 1.319524e-55 | -8.615850e-47 |
| Msa0363170 | Msa0650620 | 0.833544 | 5.017665e-56 | -8.615850e-47 |
| Msa0363170 | Msa0650730 | 0.806404 | 8.361108e-50 | -8.615850e-47 |
| Msa0363170 | Msa0653320 | -0.831247 | 1.860163e-55 | -8.615850e-47 |
| Msa0363170 | Msa0679550 | 0.820260 | 7.536563e-53 | -8.615850e-47 |
| Msa0363170 | Msa0682950 | 0.805354 | 1.389990e-49 | -8.615850e-47 |
| Msa0363170 | Msa0693790 | 0.830145 | 3.463336e-55 | -8.615850e-47 |
| Msa0363170 | Msa0696420 | 0.820963 | 5.194560e-53 | -8.615850e-47 |
| Msa0363170 | Msa0700230 | 0.800071 | 1.711404e-48 | -8.615850e-47 |
| Msa0363170 | Msa0715110 | 0.819358 | 1.210973e-52 | -8.615850e-47 |
| Msa0363170 | Msa0724950 | 0.829127 | 6.124192e-55 | -8.615850e-47 |
| Msa0363170 | Msa0737800 | 0.837621 | 4.665691e-57 | -8.615850e-47 |
| Msa0363170 | Msa0755080 | 0.823306 | 1.487195e-53 | -8.615850e-47 |
| Msa0363170 | Msa0763080 | 0.809150 | 2.181844e-50 | -8.615850e-47 |
| Msa0363170 | Msa0784620 | 0.801857 | 7.387918e-49 | -8.615850e-47 |
| Msa0363170 | Msa0785430 | 0.806027 | 1.003884e-49 | -8.615850e-47 |
| Msa0363170 | Msa0799060 | 0.837819 | 4.150753e-57 | -8.615850e-47 |
| Msa0363170 | Msa0817260 | 0.835539 | 1.582097e-56 | -8.615850e-47 |
| Msa0363170 | Msa0817270 | 0.842015 | 3.346099e-58 | -8.615850e-47 |
| Msa0363170 | Msa0820530 | -0.814433 | 1.544575e-51 | -8.615850e-47 |
| Msa0363170 | Msa0824730 | 0.820284 | 7.438365e-53 | -8.615850e-47 |
| Msa0363170 | Msa0834450 | 0.820783 | 5.716316e-53 | -8.615850e-47 |
| Msa0363170 | Msa0836620 | 0.809514 | 1.822483e-50 | -8.615850e-47 |
| Msa0363170 | Msa0845070 | 0.819730 | 9.960455e-53 | -8.615850e-47 |
| Msa0363170 | Msa0876860 | -0.845263 | 4.527976e-59 | -8.615850e-47 |
| Msa0363170 | Msa0908170 | 0.842657 | 2.261377e-58 | -8.615850e-47 |
| Msa0363170 | Msa0944730 | 0.851504 | 8.501124e-61 | -8.615850e-47 |
| Msa0363170 | Msa0956520 | -0.806940 | 6.442863e-50 | -8.615850e-47 |
| Msa0363170 | Msa0959010 | 0.833050 | 6.660821e-56 | -8.615850e-47 |
| Msa0363170 | Msa0982270 | 0.805692 | 1.180946e-49 | -8.615850e-47 |
| Msa0363170 | Msa0982590 | 0.860148 | 2.528100e-63 | -8.615850e-47 |
| Msa0363170 | Msa0993530 | 0.806166 | 9.387001e-50 | -8.615850e-47 |
| Msa0363170 | Msa1021510 | 0.812579 | 3.949014e-51 | -8.615850e-47 |
| Msa0363170 | Msa1032640 | 0.829665 | 4.533456e-55 | -8.615850e-47 |
| Msa0363170 | Msa1037020 | 0.829384 | 5.305205e-55 | -8.615850e-47 |
| Msa0363170 | Msa1047720 | 0.815986 | 6.979739e-52 | -8.615850e-47 |
| Msa0363170 | Msa1048700 | 0.836015 | 1.198712e-56 | -8.615850e-47 |
| Msa0363170 | Msa1072530 | -0.815594 | 8.533348e-52 | -8.615850e-47 |
| Msa0363170 | Msa1075590 | 0.803505 | 3.375513e-49 | -8.615850e-47 |
| Msa0363170 | Msa1077670 | 0.831310 | 1.795010e-55 | -8.615850e-47 |
| Msa0363170 | Msa1084160 | -0.801419 | 9.085384e-49 | -8.615850e-47 |
| Msa0363170 | Msa1129400 | 0.816210 | 6.218840e-52 | -8.615850e-47 |
| Msa0363170 | Msa1130210 | -0.832253 | 1.050370e-55 | -8.615850e-47 |
| Msa0363170 | Msa1132860 | -0.804590 | 2.007883e-49 | -8.615850e-47 |
| Msa0363170 | Msa1135150 | 0.806293 | 8.824006e-50 | -8.615850e-47 |
| Msa0363170 | Msa1135880 | 0.804261 | 2.351758e-49 | -8.615850e-47 |
| Msa0363170 | Msa1143790 | 0.808774 | 2.625127e-50 | -8.615850e-47 |
| Msa0363170 | Msa1162980 | 0.822288 | 2.566577e-53 | -8.615850e-47 |
| Msa0363170 | Msa1164530 | 0.839683 | 1.368640e-57 | -8.615850e-47 |
| Msa0363170 | Msa1168040 | -0.813662 | 2.284859e-51 | -8.615850e-47 |
| Msa0363170 | Msa1174310 | 0.850572 | 1.557026e-60 | -8.615850e-47 |
| Msa0363170 | Msa1182630 | 0.832144 | 1.117792e-55 | -8.615850e-47 |
| Msa0363170 | Msa1182640 | 0.901186 | 3.455244e-78 | -8.615850e-47 |
| Msa0363170 | Msa1207460 | -0.830738 | 2.479876e-55 | -8.615850e-47 |
| Msa0363170 | Msa1218650 | 0.833885 | 4.123008e-56 | -8.615850e-47 |
| Msa0363170 | Msa1229850 | 0.857969 | 1.136091e-62 | -8.615850e-47 |
| Msa0363170 | Msa1235020 | 0.823879 | 1.092068e-53 | -8.615850e-47 |
| Msa0363170 | Msa1235400 | 0.828292 | 9.748976e-55 | -8.615850e-47 |
| Msa0363170 | Msa1236070 | -0.804724 | 1.883110e-49 | -8.615850e-47 |
| Msa0363170 | Msa1241800 | 0.803704 | 3.070538e-49 | -8.615850e-47 |
| Msa0363170 | Msa1249920 | 0.812770 | 3.587160e-51 | -8.615850e-47 |
| Msa0363170 | Msa1272520 | 0.864026 | 1.634709e-64 | -8.615850e-47 |
| Msa0363170 | Msa1276510 | 0.811309 | 7.465433e-51 | -8.615850e-47 |
| Msa0363170 | Msa1280620 | 0.810890 | 9.204762e-51 | -8.615850e-47 |
| Msa0363170 | Msa1291350 | 0.805691 | 1.181170e-49 | -8.615850e-47 |
| Msa0363170 | Msa1300860 | 0.814550 | 1.455119e-51 | -8.615850e-47 |
| Msa0363170 | Msa1307740 | 0.823960 | 1.045481e-53 | -8.615850e-47 |
| Msa0363170 | Msa1310660 | 0.880782 | 4.134647e-70 | -8.615850e-47 |
| Msa0363170 | Msa1314770 | 0.851295 | 9.740688e-61 | -8.615850e-47 |
| Msa0363170 | Msa1340830 | 0.809288 | 2.037642e-50 | -8.615850e-47 |
| Msa0363170 | Msa1350690 | 0.868006 | 8.994079e-66 | -8.615850e-47 |
| Msa0363170 | Msa1360280 | 0.857850 | 1.232358e-62 | -8.615850e-47 |
| Msa0363170 | Msa1363700 | 0.824540 | 7.636799e-54 | -8.615850e-47 |
| Msa0363170 | Msa1371090 | 0.807885 | 4.062068e-50 | -8.615850e-47 |
| Msa0363170 | Msa1383480 | 0.866241 | 3.292359e-65 | -8.615850e-47 |
| Msa0363170 | Msa1404720 | 0.805685 | 1.184894e-49 | -8.615850e-47 |
| Msa0363170 | Msa1415920 | 0.844596 | 6.855481e-59 | -8.615850e-47 |
| Msa0363170 | Msa1419110 | 0.826882 | 2.126078e-54 | -8.615850e-47 |
| Msa0363170 | Msa1422840 | 0.825991 | 3.465852e-54 | -8.615850e-47 |
| Msa0363170 | Msa1435400 | 0.806012 | 1.011260e-49 | -8.615850e-47 |
| Msa0363170 | Msa1437720 | 0.801657 | 8.121132e-49 | -8.615850e-47 |
| Msa0363170 | Msa1439230 | 0.826613 | 2.463942e-54 | -8.615850e-47 |
| Msa0363170 | Msa1442220 | -0.824146 | 9.453683e-54 | -8.615850e-47 |
| Msa0363170 | Msa1452470 | 0.801591 | 8.374888e-49 | -8.615850e-47 |
| Msa0363170 | Msa1459760 | -0.813532 | 2.440065e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363170 | MtrunA17_Chr3g0094861 | 99.329 | 298 | 2 | 0 | 16 | 313 | 26 | 323 | 0.0 | 613 |
| Msa0363170 | MtrunA17_Chr3g0137951 | 60.843 | 166 | 60 | 3 | 17 | 180 | 30 | 192 | 2.68e-45 | 164 |
| Msa0363170 | MtrunA17_Chr1g0201731 | 55.422 | 83 | 37 | 0 | 22 | 104 | 38 | 120 | 1.59e-27 | 112 |
| Msa0363170 | MtrunA17_Chr3g0088821 | 31.579 | 228 | 125 | 5 | 17 | 231 | 11 | 220 | 1.09e-25 | 107 |
| Msa0363170 | MtrunA17_Chr4g0073711 | 63.380 | 71 | 26 | 0 | 15 | 85 | 25 | 95 | 6.13e-25 | 105 |
| Msa0363170 | MtrunA17_Chr8g0352231 | 38.286 | 175 | 87 | 8 | 17 | 174 | 11 | 181 | 2.36e-24 | 103 |
| Msa0363170 | MtrunA17_Chr7g0236891 | 50.000 | 132 | 60 | 1 | 183 | 308 | 40 | 171 | 1.42e-23 | 95.1 |
| Msa0363170 | MtrunA17_Chr8g0364641 | 59.155 | 71 | 29 | 0 | 15 | 85 | 25 | 95 | 1.03e-21 | 95.9 |
| Msa0363170 | MtrunA17_Chr8g0383701 | 34.574 | 188 | 85 | 6 | 17 | 180 | 29 | 202 | 2.94e-21 | 94.4 |
| Msa0363170 | MtrunA17_Chr2g0296991 | 49.412 | 85 | 42 | 1 | 18 | 101 | 28 | 112 | 6.43e-21 | 93.6 |
| Msa0363170 | MtrunA17_Chr3g0078671 | 53.731 | 67 | 31 | 0 | 19 | 85 | 31 | 97 | 1.16e-17 | 83.6 |
| Msa0363170 | MtrunA17_Chr7g0267741 | 48.387 | 62 | 32 | 0 | 19 | 80 | 1 | 62 | 8.11e-14 | 65.5 |
| Msa0363170 | MtrunA17_Chr8g0379241 | 38.710 | 62 | 38 | 0 | 24 | 85 | 6 | 67 | 9.02e-12 | 65.9 |
| Msa0363170 | MtrunA17_Chr2g0284211 | 43.548 | 62 | 32 | 1 | 27 | 85 | 9 | 70 | 6.73e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363170 | AT5G11260.1 | 72.519 | 131 | 35 | 1 | 181 | 310 | 33 | 163 | 1.34e-55 | 178 |
| Msa0363170 | AT5G11260.2 | 72.174 | 115 | 31 | 1 | 181 | 294 | 33 | 147 | 3.77e-50 | 164 |
| Msa0363170 | AT4G32410.1 | 59.639 | 166 | 61 | 4 | 16 | 180 | 28 | 188 | 1.24e-48 | 174 |
| Msa0363170 | AT2G25540.1 | 59.091 | 132 | 50 | 2 | 17 | 147 | 23 | 151 | 4.89e-41 | 152 |
| Msa0363170 | AT3G17609.2 | 55.372 | 121 | 47 | 3 | 183 | 298 | 23 | 141 | 6.72e-33 | 119 |
| Msa0363170 | AT3G17609.3 | 54.867 | 113 | 44 | 3 | 191 | 298 | 2 | 112 | 3.35e-30 | 111 |
| Msa0363170 | AT3G17609.4 | 63.750 | 80 | 29 | 0 | 219 | 298 | 47 | 126 | 2.72e-28 | 106 |
| Msa0363170 | AT3G17609.1 | 63.750 | 80 | 29 | 0 | 219 | 298 | 48 | 127 | 2.74e-28 | 106 |
| Msa0363170 | AT5G17420.1 | 55.294 | 85 | 32 | 1 | 1 | 85 | 17 | 95 | 1.05e-26 | 110 |
| Msa0363170 | AT5G05170.1 | 39.130 | 184 | 80 | 7 | 17 | 177 | 10 | 184 | 8.46e-24 | 102 |
| Msa0363170 | AT5G09870.1 | 40.625 | 160 | 86 | 5 | 19 | 177 | 31 | 182 | 5.35e-22 | 97.1 |
| Msa0363170 | AT4G39350.1 | 58.209 | 67 | 28 | 0 | 19 | 85 | 31 | 97 | 2.26e-20 | 92.4 |
| Msa0363170 | AT5G64740.1 | 59.701 | 67 | 27 | 0 | 19 | 85 | 31 | 97 | 6.24e-20 | 90.9 |
| Msa0363170 | AT5G44030.2 | 42.529 | 87 | 48 | 1 | 21 | 105 | 17 | 103 | 7.37e-20 | 90.9 |
| Msa0363170 | AT5G44030.1 | 46.067 | 89 | 42 | 3 | 21 | 105 | 17 | 103 | 6.44e-17 | 82.0 |
| Msa0363170 | AT2G21770.1 | 56.250 | 64 | 28 | 0 | 22 | 85 | 34 | 97 | 9.15e-17 | 81.6 |
| Msa0363170 | AT4G18780.1 | 33.333 | 111 | 64 | 2 | 26 | 135 | 8 | 109 | 2.89e-13 | 70.9 |
Find 103 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCATTCAAATTCTTTA+AGG | 0.156035 | 3_1:-55349381 | None:intergenic |
| CCATTCAAATTTAGGTAGTA+TGG | 0.223722 | 3_1:+55352568 | Msa0363170:three_prime_UTR |
| AAGATGATGTCGACGATTTA+AGG | 0.228388 | 3_1:+55349685 | Msa0363170:CDS |
| AACTTTCTCCATTCAAATTT+AGG | 0.256523 | 3_1:+55352560 | Msa0363170:three_prime_UTR |
| ACCATTTGTTGAGGATATAA+AGG | 0.258610 | 3_1:+55352636 | Msa0363170:three_prime_UTR |
| TGCTGGTCCAGAACGTGTTC+AGG | 0.289263 | 3_1:+55351265 | Msa0363170:CDS |
| TAGCCGTTTGCTTTCTTTGT+CGG | 0.302350 | 3_1:-55351327 | None:intergenic |
| AACTCTGTACCTGGTTGCTT+TGG | 0.303795 | 3_1:-55350470 | None:intergenic |
| CTAATTTCATTCAGCATTGT+TGG | 0.308963 | 3_1:-55352225 | None:intergenic |
| GCTGACCTCTCTTCATCTTC+TGG | 0.318002 | 3_1:+55349768 | Msa0363170:CDS |
| GCAAGCAAGGGAGAGGAAAA+AGG | 0.332419 | 3_1:+55351500 | Msa0363170:CDS |
| GCAGATTCACCTCCCATATC+TGG | 0.342040 | 3_1:-55351206 | None:intergenic |
| ATTCTTTCTAGGTGTGCATT+TGG | 0.342651 | 3_1:+55352322 | Msa0363170:three_prime_UTR |
| CCAGCACCCTGAACACGTTC+TGG | 0.345136 | 3_1:-55351272 | None:intergenic |
| GCAAACTACATCAGGTCCTT+TGG | 0.365962 | 3_1:+55350409 | Msa0363170:CDS |
| TTTACGAGAGGCTGATGTTC+CGG | 0.366238 | 3_1:-55351228 | None:intergenic |
| TGACCATTCAAATTCTTTAA+GGG | 0.374526 | 3_1:-55349380 | None:intergenic |
| GATCAGAAGAGTGCCAGATA+TGG | 0.377906 | 3_1:+55351193 | Msa0363170:CDS |
| CGTTTGCTTTCTTTGTCGGC+TGG | 0.382290 | 3_1:-55351323 | None:intergenic |
| TCTTGCATTGTGGACATGAT+TGG | 0.409151 | 3_1:-55349526 | None:intergenic |
| ATTTATTGTCTTAAACCTCT+TGG | 0.412809 | 3_1:+55352705 | Msa0363170:three_prime_UTR |
| CCAGAACGTGTTCAGGGTGC+TGG | 0.423989 | 3_1:+55351272 | Msa0363170:CDS |
| TTAAGGAATGAGGTCAAGTA+TGG | 0.424236 | 3_1:+55349702 | Msa0363170:CDS |
| CCATTTGTTGAGGATATAAA+GGG | 0.426493 | 3_1:+55352637 | Msa0363170:three_prime_UTR |
| GGTATACTATATATAGATAG+TGG | 0.427771 | 3_1:+55352726 | Msa0363170:three_prime_UTR |
| CAAACTACATCAGGTCCTTT+GGG | 0.435196 | 3_1:+55350410 | Msa0363170:CDS |
| CCATCTCACAAATGGACAAC+TGG | 0.446482 | 3_1:+55349815 | Msa0363170:CDS |
| AGGCTTAAATCGTGCTTGTA+TGG | 0.446599 | 3_1:+55349310 | Msa0363170:exon |
| CAAAATCCCCATCTCACAAA+TGG | 0.448984 | 3_1:+55349807 | Msa0363170:CDS |
| CCCTTTATATCCTCAACAAA+TGG | 0.452208 | 3_1:-55352637 | None:intergenic |
| CAGTTGTCCATTTGTGAGAT+GGG | 0.452668 | 3_1:-55349814 | None:intergenic |
| GCTCTGAATTCTTCTTCTCT+AGG | 0.454026 | 3_1:-55351557 | None:intergenic |
| AAACCCTTAAAGAATTTGAA+TGG | 0.465051 | 3_1:+55349377 | Msa0363170:CDS |
| CCAGTTGTCCATTTGTGAGA+TGG | 0.468711 | 3_1:-55349815 | None:intergenic |
| GTTTGCTTTCTTTGTCGGCT+GGG | 0.469429 | 3_1:-55351322 | None:intergenic |
| TAGTGATAATCAAAACTTAG+AGG | 0.472931 | 3_1:+55352245 | Msa0363170:three_prime_UTR |
| GTGAAGCACTGACATGAAAA+CGG | 0.473292 | 3_1:+55352403 | Msa0363170:three_prime_UTR |
| CAATCTGTGCAAACTACATC+AGG | 0.479607 | 3_1:+55350401 | Msa0363170:CDS |
| ACGGGACATGTAATTGACTT+TGG | 0.479948 | 3_1:+55352422 | Msa0363170:three_prime_UTR |
| ATCAGAAGAGTGCCAGATAT+GGG | 0.480465 | 3_1:+55351194 | Msa0363170:CDS |
| GTATGATATAACTTCACAAA+TGG | 0.481787 | 3_1:-55352671 | None:intergenic |
| CCATACTACCTAAATTTGAA+TGG | 0.483920 | 3_1:-55352568 | None:intergenic |
| TAACTTGTGAGAAATTGATC+TGG | 0.490744 | 3_1:+55349285 | Msa0363170:five_prime_UTR |
| GAGTTTCAGCTCAGCAAGCA+AGG | 0.496174 | 3_1:+55351487 | Msa0363170:CDS |
| AAAGGCACTGGTTCAACTGC+TGG | 0.500784 | 3_1:+55351248 | Msa0363170:CDS |
| TGCTAAGGCAGGATGGCAAT+GGG | 0.509509 | 3_1:+55349737 | Msa0363170:CDS |
| TGAAAATCAAATGCTGAGAC+AGG | 0.509539 | 3_1:+55351608 | Msa0363170:CDS |
| TGAAGCACTGACATGAAAAC+GGG | 0.511180 | 3_1:+55352404 | Msa0363170:three_prime_UTR |
| ATTCTTGTTATGAATACGAA+TGG | 0.515816 | 3_1:+55349492 | Msa0363170:CDS |
| CAGCCGACAAAGAAAGCAAA+CGG | 0.518077 | 3_1:+55351324 | Msa0363170:CDS |
| AAGAAAGCAAACGGCTAAAG+AGG | 0.525143 | 3_1:+55351333 | Msa0363170:CDS |
| ATGCTAAGGCAGGATGGCAA+TGG | 0.525935 | 3_1:+55349736 | Msa0363170:CDS |
| CAAATATGTGGTGATACTGT+TGG | 0.528030 | 3_1:+55349410 | Msa0363170:CDS |
| CAGCTCAGCAAGCAAGGGAG+AGG | 0.533112 | 3_1:+55351493 | Msa0363170:CDS |
| GCTGGTCCAGAACGTGTTCA+GGG | 0.533529 | 3_1:+55351266 | Msa0363170:CDS |
| CGTGTTCAGGGTGCTGGAGA+GGG | 0.536653 | 3_1:+55351278 | Msa0363170:CDS |
| TCAGATGATCCTCGAGTGAA+AGG | 0.541668 | 3_1:+55349651 | Msa0363170:intron |
| ATGGATGTTACCATTTGTTG+AGG | 0.552414 | 3_1:+55352627 | Msa0363170:three_prime_UTR |
| TGTGAGAAATTGATCTGGAT+AGG | 0.554184 | 3_1:+55349290 | Msa0363170:five_prime_UTR |
| CAAGGAAATAATGCTAAGGC+AGG | 0.555264 | 3_1:+55349726 | Msa0363170:CDS |
| TGGTTGCTTTGGATCAACAT+AGG | 0.561478 | 3_1:-55350459 | None:intergenic |
| AAAGGCATACTTGAGTGACT+TGG | 0.562983 | 3_1:+55351518 | Msa0363170:CDS |
| AACACTACAGCTAGCAGGAG+AGG | 0.568592 | 3_1:+55352188 | Msa0363170:CDS |
| ACGTGTTCAGGGTGCTGGAG+AGG | 0.570680 | 3_1:+55351277 | Msa0363170:CDS |
| TCAGCCTCTCGTAAAGGCAC+TGG | 0.570711 | 3_1:+55351236 | Msa0363170:CDS |
| GGAACATCAGCCTCTCGTAA+AGG | 0.572244 | 3_1:+55351230 | Msa0363170:CDS |
| TGAAGAACACTACAGCTAGC+AGG | 0.574364 | 3_1:+55352183 | Msa0363170:CDS |
| GAAATAATGCTAAGGCAGGA+TGG | 0.579382 | 3_1:+55349730 | Msa0363170:CDS |
| GTATGGAGGTGAGTTACTAT+CGG | 0.580071 | 3_1:+55352585 | Msa0363170:three_prime_UTR |
| AGTGATAATCAAAACTTAGA+GGG | 0.583680 | 3_1:+55352246 | Msa0363170:three_prime_UTR |
| TCATCACCTCCTTTCACTCG+AGG | 0.584150 | 3_1:-55349660 | None:intergenic |
| GTGCATTTGGAATTTCATGA+AGG | 0.584245 | 3_1:+55352335 | Msa0363170:three_prime_UTR |
| AGTTGTCCATTTGTGAGATG+GGG | 0.584444 | 3_1:-55349813 | None:intergenic |
| AATGAGGTCAAGTATGGTCA+AGG | 0.586685 | 3_1:+55349708 | Msa0363170:CDS |
| ACTGTTGGATTAACAGCCAC+CGG | 0.592728 | 3_1:+55349425 | Msa0363170:CDS |
| AGTTTCAGCTCAGCAAGCAA+GGG | 0.598096 | 3_1:+55351488 | Msa0363170:CDS |
| TGGTCAAGGAAATAATGCTA+AGG | 0.601648 | 3_1:+55349722 | Msa0363170:CDS |
| GTATACTATATATAGATAGT+GGG | 0.604487 | 3_1:+55352727 | Msa0363170:three_prime_UTR |
| GGTCAAATCTGTCAAATATG+TGG | 0.604762 | 3_1:+55349398 | Msa0363170:CDS |
| TTGAATCTAGTCTTGCATTG+TGG | 0.607208 | 3_1:-55349536 | None:intergenic |
| CATAACAAGAATAACAAAGT+GGG | 0.607961 | 3_1:-55349481 | None:intergenic |
| TGTCGACGATTTAAGGAATG+AGG | 0.608917 | 3_1:+55349692 | Msa0363170:CDS |
| TTCAAATTTAGGTAGTATGG+AGG | 0.610153 | 3_1:+55352571 | Msa0363170:three_prime_UTR |
| AGCAGGAGAGGAAGCAACGG+TGG | 0.611550 | 3_1:+55352200 | Msa0363170:CDS |
| GCAAGCAACAAAGACTTCGC+CGG | 0.615968 | 3_1:-55349444 | None:intergenic |
| GCTAGCAGGAGAGGAAGCAA+CGG | 0.617888 | 3_1:+55352197 | Msa0363170:CDS |
| TATGTTGATCCAAAGCAACC+AGG | 0.626073 | 3_1:+55350461 | Msa0363170:CDS |
| AGCAACAAAGACTTCGCCGG+TGG | 0.627106 | 3_1:-55349441 | None:intergenic |
| TGAACCAGTGCCTTTACGAG+AGG | 0.628738 | 3_1:-55351240 | None:intergenic |
| TCATAACAAGAATAACAAAG+TGG | 0.629424 | 3_1:-55349482 | None:intergenic |
| ACTAGATTCAAAAGTCACAA+AGG | 0.638228 | 3_1:+55349548 | Msa0363170:CDS |
| GATATGGGAGGTGAATCTGC+CGG | 0.641842 | 3_1:+55351209 | Msa0363170:CDS |
| GGAGAGGGTCAAAAGAAGAG+AGG | 0.648990 | 3_1:+55351293 | Msa0363170:CDS |
| CATGTCCAGAAGATGAAGAG+AGG | 0.650710 | 3_1:-55349773 | None:intergenic |
| AAAATGGTAATAGGCTACTG+AGG | 0.652705 | 3_1:+55351460 | Msa0363170:intron |
| GATGATCCTCGAGTGAAAGG+AGG | 0.657821 | 3_1:+55349654 | Msa0363170:intron |
| ACAAGAATAACAAAGTGGGA+AGG | 0.660604 | 3_1:-55349477 | None:intergenic |
| TGAGTATCAGAAGTAGCACA+TGG | 0.676546 | 3_1:-55350380 | None:intergenic |
| TCTATATATAGTATACCAAG+AGG | 0.679813 | 3_1:-55352720 | None:intergenic |
| GTGTAAAACACTGATACATG+AGG | 0.689531 | 3_1:-55352490 | None:intergenic |
| AGAAGAGTGCCAGATATGGG+AGG | 0.694389 | 3_1:+55351197 | Msa0363170:CDS |
| AAAGTGGGAAGGAACACTCG+TGG | 0.715900 | 3_1:-55349466 | None:intergenic |
| TCCAGGTCTTGAGAGTGACG+AGG | 0.727846 | 3_1:+55351169 | Msa0363170:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATGTGAAATAATATT+TGG | + | chr3_1:55350296-55350315 | Msa0363170:intron | 10.0% |
| !!! | TTTTTGTAATAATTTCATTA+TGG | + | chr3_1:55352608-55352627 | Msa0363170:three_prime_UTR | 10.0% |
| !! | TTAACTTATATATTCACAAT+TGG | + | chr3_1:55349906-55349925 | Msa0363170:intron | 15.0% |
| !!! | TCATTTGAACTTTTTAAAAT+CGG | + | chr3_1:55350079-55350098 | Msa0363170:intron | 15.0% |
| !! | GTTTAAGAAAGTAAAATTTA+TGG | + | chr3_1:55350146-55350165 | Msa0363170:intron | 15.0% |
| !!! | ATACTAACTGTATATTTTTA+TGG | + | chr3_1:55350338-55350357 | Msa0363170:intron | 15.0% |
| !!! | TCTAAAATATTGTTTTAGAA+AGG | + | chr3_1:55351823-55351842 | Msa0363170:intron | 15.0% |
| !! | AAAGTTTATGCATATTGAAA+AGG | - | chr3_1:55350590-55350609 | None:intergenic | 20.0% |
| !! | ATAGAAGTAAAAGTCTTTAT+AGG | + | chr3_1:55350644-55350663 | Msa0363170:intron | 20.0% |
| !! | CTCAATTTAGAAAATGAAAA+AGG | - | chr3_1:55350709-55350728 | None:intergenic | 20.0% |
| !! | ATACATTAAAGGAATTCTAT+CGG | - | chr3_1:55350901-55350920 | None:intergenic | 20.0% |
| !! | CATCACATGAATAAATAAAA+TGG | + | chr3_1:55351087-55351106 | Msa0363170:intron | 20.0% |
| !! | AATAAAATGGTAATCTTGAT+TGG | + | chr3_1:55351100-55351119 | Msa0363170:intron | 20.0% |
| !! | AATACTAACAATATTGACAT+AGG | - | chr3_1:55352006-55352025 | None:intergenic | 20.0% |
| !! | TTCATTTAATGGTATATGAT+TGG | + | chr3_1:55352146-55352165 | Msa0363170:intron | 20.0% |
| !! | GTATACTATATATAGATAGT+GGG | + | chr3_1:55352727-55352746 | Msa0363170:three_prime_UTR | 20.0% |
| ! | AAACCCTTAAAGAATTTGAA+TGG | + | chr3_1:55349377-55349396 | Msa0363170:CDS | 25.0% |
| ! | TGACCATTCAAATTCTTTAA+GGG | - | chr3_1:55349383-55349402 | None:intergenic | 25.0% |
| ! | TTGACCATTCAAATTCTTTA+AGG | - | chr3_1:55349384-55349403 | None:intergenic | 25.0% |
| ! | CATAACAAGAATAACAAAGT+GGG | - | chr3_1:55349484-55349503 | None:intergenic | 25.0% |
| ! | TCATAACAAGAATAACAAAG+TGG | - | chr3_1:55349485-55349504 | None:intergenic | 25.0% |
| !! | ATTCTTGTTATGAATACGAA+TGG | + | chr3_1:55349492-55349511 | Msa0363170:CDS | 25.0% |
| !! | AATTTTCAGACTCTTGAATT+CGG | + | chr3_1:55349853-55349872 | Msa0363170:intron | 25.0% |
| !! | ATAAGTTAACACATTTTTGC+AGG | - | chr3_1:55349895-55349914 | None:intergenic | 25.0% |
| ! | AACATTAAAAGTGAAGAAGT+AGG | - | chr3_1:55349957-55349976 | None:intergenic | 25.0% |
| !!! | TTCTATTGTGAGTATTTTGA+AGG | - | chr3_1:55350630-55350649 | None:intergenic | 25.0% |
| !! | TTCCATTTTCTCATTATTAC+CGG | + | chr3_1:55351017-55351036 | Msa0363170:intron | 25.0% |
| !!! | ATAAAATACTAGCATTGACA+TGG | - | chr3_1:55351058-55351077 | None:intergenic | 25.0% |
| ! | ATGAATCAATCATAGGAAAA+AGG | - | chr3_1:55351401-55351420 | None:intergenic | 25.0% |
| ! | AAATGCTATGAATCAATCAT+AGG | - | chr3_1:55351408-55351427 | None:intergenic | 25.0% |
| !!! | GTAATTTGTTTGTTACATTG+TGG | + | chr3_1:55351431-55351450 | Msa0363170:intron | 25.0% |
| ! | GGTATTATTGTTCTTTAGAT+AGG | + | chr3_1:55351719-55351738 | Msa0363170:intron | 25.0% |
| !!! | AAATGACACTCATTTTGAAA+TGG | - | chr3_1:55351861-55351880 | None:intergenic | 25.0% |
| !!! | TTCAAAATGAGTGTCATTTA+AGG | + | chr3_1:55351862-55351881 | Msa0363170:intron | 25.0% |
| ! | ATACACACCAATAATTGATA+GGG | - | chr3_1:55351950-55351969 | None:intergenic | 25.0% |
| ! | TGTTAGTATTATGTTTAGAG+TGG | + | chr3_1:55352016-55352035 | Msa0363170:intron | 25.0% |
| !! | GTTAGTATTATGTTTAGAGT+GGG | + | chr3_1:55352017-55352036 | Msa0363170:intron | 25.0% |
| !! | TTAGTATTATGTTTAGAGTG+GGG | + | chr3_1:55352018-55352037 | Msa0363170:intron | 25.0% |
| !!! | AATTTTTGGGGATAAAATGA+TGG | - | chr3_1:55352092-55352111 | None:intergenic | 25.0% |
| ! | TGAACTAGAATATGCAAATT+TGG | - | chr3_1:55352130-55352149 | None:intergenic | 25.0% |
| !!! | GCATATTCTAGTTCATTTAA+TGG | + | chr3_1:55352135-55352154 | Msa0363170:intron | 25.0% |
| ! | TAGTGATAATCAAAACTTAG+AGG | + | chr3_1:55352245-55352264 | Msa0363170:three_prime_UTR | 25.0% |
| ! | AGTGATAATCAAAACTTAGA+GGG | + | chr3_1:55352246-55352265 | Msa0363170:three_prime_UTR | 25.0% |
| !!! | TAGTTTTGATGATTCTTTCT+AGG | + | chr3_1:55352311-55352330 | Msa0363170:three_prime_UTR | 25.0% |
| !! | ATATCAAAACACGATGTTTT+AGG | - | chr3_1:55352383-55352402 | None:intergenic | 25.0% |
| ! | AACTTTCTCCATTCAAATTT+AGG | + | chr3_1:55352560-55352579 | Msa0363170:three_prime_UTR | 25.0% |
| ! | GTATGATATAACTTCACAAA+TGG | - | chr3_1:55352674-55352693 | None:intergenic | 25.0% |
| ! | ATTTATTGTCTTAAACCTCT+TGG | + | chr3_1:55352705-55352724 | Msa0363170:three_prime_UTR | 25.0% |
| ! | TCTATATATAGTATACCAAG+AGG | - | chr3_1:55352723-55352742 | None:intergenic | 25.0% |
| ! | GGTATACTATATATAGATAG+TGG | + | chr3_1:55352726-55352745 | Msa0363170:three_prime_UTR | 25.0% |
| ! | TAACTTGTGAGAAATTGATC+TGG | + | chr3_1:55349285-55349304 | Msa0363170:five_prime_UTR | 30.0% |
| ACTAGATTCAAAAGTCACAA+AGG | + | chr3_1:55349548-55349567 | Msa0363170:CDS | 30.0% | |
| !! | TATTTTTATGGTCAGATGTC+TGG | + | chr3_1:55350350-55350369 | Msa0363170:intron | 30.0% |
| GACACAGAAAAACAAAATTG+TGG | - | chr3_1:55350672-55350691 | None:intergenic | 30.0% | |
| ! | TCTAAATTGAGAGTCAGTTT+TGG | + | chr3_1:55350718-55350737 | Msa0363170:intron | 30.0% |
| ! | ACTTTTGAACAAACACTTGT+AGG | + | chr3_1:55350744-55350763 | Msa0363170:intron | 30.0% |
| ! | ATTGGCCTAGATAATTTACT+TGG | + | chr3_1:55351118-55351137 | Msa0363170:intron | 30.0% |
| TTGGCCTAGATAATTTACTT+GGG | + | chr3_1:55351119-55351138 | Msa0363170:intron | 30.0% | |
| CAAACCCAAGTAAATTATCT+AGG | - | chr3_1:55351126-55351145 | None:intergenic | 30.0% | |
| AGAACAATAATACCATGACA+GGG | - | chr3_1:55351713-55351732 | None:intergenic | 30.0% | |
| AAGAACAATAATACCATGAC+AGG | - | chr3_1:55351714-55351733 | None:intergenic | 30.0% | |
| AAACCAACCCTATCAATTAT+TGG | + | chr3_1:55351940-55351959 | Msa0363170:intron | 30.0% | |
| GATACACACCAATAATTGAT+AGG | - | chr3_1:55351951-55351970 | None:intergenic | 30.0% | |
| ! | ATTCACAGGGAGAAATTTTT+GGG | - | chr3_1:55352105-55352124 | None:intergenic | 30.0% |
| ! | AATTCACAGGGAGAAATTTT+TGG | - | chr3_1:55352106-55352125 | None:intergenic | 30.0% |
| CTAATTTCATTCAGCATTGT+TGG | - | chr3_1:55352228-55352247 | None:intergenic | 30.0% | |
| CCATACTACCTAAATTTGAA+TGG | - | chr3_1:55352571-55352590 | None:intergenic | 30.0% | |
| CCATTCAAATTTAGGTAGTA+TGG | + | chr3_1:55352568-55352587 | Msa0363170:three_prime_UTR | 30.0% | |
| TTCAAATTTAGGTAGTATGG+AGG | + | chr3_1:55352571-55352590 | Msa0363170:three_prime_UTR | 30.0% | |
| ! | ACCATTTGTTGAGGATATAA+AGG | + | chr3_1:55352636-55352655 | Msa0363170:three_prime_UTR | 30.0% |
| ! | CCATTTGTTGAGGATATAAA+GGG | + | chr3_1:55352637-55352656 | Msa0363170:three_prime_UTR | 30.0% |
| TGTGAGAAATTGATCTGGAT+AGG | + | chr3_1:55349290-55349309 | Msa0363170:five_prime_UTR | 35.0% | |
| GGTCAAATCTGTCAAATATG+TGG | + | chr3_1:55349398-55349417 | Msa0363170:CDS | 35.0% | |
| CAAATATGTGGTGATACTGT+TGG | + | chr3_1:55349410-55349429 | Msa0363170:CDS | 35.0% | |
| ACAAGAATAACAAAGTGGGA+AGG | - | chr3_1:55349480-55349499 | None:intergenic | 35.0% | |
| !! | TTGAATCTAGTCTTGCATTG+TGG | - | chr3_1:55349539-55349558 | None:intergenic | 35.0% |
| ATCCACATTCATCTTGTTCA+TGG | - | chr3_1:55349630-55349649 | None:intergenic | 35.0% | |
| AAGATGATGTCGACGATTTA+AGG | + | chr3_1:55349685-55349704 | Msa0363170:CDS | 35.0% | |
| TTAAGGAATGAGGTCAAGTA+TGG | + | chr3_1:55349702-55349721 | Msa0363170:CDS | 35.0% | |
| TGGTCAAGGAAATAATGCTA+AGG | + | chr3_1:55349722-55349741 | Msa0363170:CDS | 35.0% | |
| ! | ATTTTGAGCCAAGATGTAGA+AGG | + | chr3_1:55350212-55350231 | Msa0363170:intron | 35.0% |
| ! | TTTTGAGCCAAGATGTAGAA+GGG | + | chr3_1:55350213-55350232 | Msa0363170:intron | 35.0% |
| TGCTACACTACAATCATTTC+AGG | - | chr3_1:55350498-55350517 | None:intergenic | 35.0% | |
| GTGTAGCATATCACATTTCA+TGG | + | chr3_1:55350510-55350529 | Msa0363170:intron | 35.0% | |
| !! | GTATTTTGAAGGAACTGGAA+AGG | - | chr3_1:55350619-55350638 | None:intergenic | 35.0% |
| !! | TGTGAGTATTTTGAAGGAAC+TGG | - | chr3_1:55350624-55350643 | None:intergenic | 35.0% |
| CAACAGGAGTGATACATTAA+AGG | - | chr3_1:55350912-55350931 | None:intergenic | 35.0% | |
| ! | CTGAAGTGTTAGTATCACAT+GGG | - | chr3_1:55350946-55350965 | None:intergenic | 35.0% |
| ! | TCTGAAGTGTTAGTATCACA+TGG | - | chr3_1:55350947-55350966 | None:intergenic | 35.0% |
| CACCGGTAATAATGAGAAAA+TGG | - | chr3_1:55351022-55351041 | None:intergenic | 35.0% | |
| GTTTGAACTCTTAGTGACTT+TGG | + | chr3_1:55351141-55351160 | Msa0363170:intron | 35.0% | |
| !! | TAGTGACTTTGGAATAATCC+AGG | + | chr3_1:55351152-55351171 | Msa0363170:intron | 35.0% |
| CAATCATAGGAAAAAGGAGT+TGG | - | chr3_1:55351395-55351414 | None:intergenic | 35.0% | |
| TACATTGTGGCGTGTAAAAA+TGG | + | chr3_1:55351444-55351463 | Msa0363170:intron | 35.0% | |
| TGGCGTGTAAAAATGGTAAT+AGG | + | chr3_1:55351451-55351470 | Msa0363170:intron | 35.0% | |
| AAAATGGTAATAGGCTACTG+AGG | + | chr3_1:55351460-55351479 | Msa0363170:intron | 35.0% | |
| TGAAAATCAAATGCTGAGAC+AGG | + | chr3_1:55351608-55351627 | Msa0363170:CDS | 35.0% | |
| ! | CAAAGGCATGTTGATGTAAT+TGG | - | chr3_1:55351652-55351671 | None:intergenic | 35.0% |
| TTTAGATAGGTTACATGAGC+TGG | + | chr3_1:55351732-55351751 | Msa0363170:intron | 35.0% | |
| !!! | GACACTCATTTTGAAATGGA+GGG | - | chr3_1:55351857-55351876 | None:intergenic | 35.0% |
| !!! | TGACACTCATTTTGAAATGG+AGG | - | chr3_1:55351858-55351877 | None:intergenic | 35.0% |
| ACACCAATAATTGATAGGGT+TGG | - | chr3_1:55351946-55351965 | None:intergenic | 35.0% | |
| !! | AAAATGATGGTTTGGTGGAA+GGG | - | chr3_1:55352079-55352098 | None:intergenic | 35.0% |
| !! | TAAAATGATGGTTTGGTGGA+AGG | - | chr3_1:55352080-55352099 | None:intergenic | 35.0% |
| TTGGGGATAAAATGATGGTT+TGG | - | chr3_1:55352087-55352106 | None:intergenic | 35.0% | |
| ! | TTCACAGGGAGAAATTTTTG+GGG | - | chr3_1:55352104-55352123 | None:intergenic | 35.0% |
| TGCAAATTTGGCAATTCACA+GGG | - | chr3_1:55352118-55352137 | None:intergenic | 35.0% | |
| ATGCAAATTTGGCAATTCAC+AGG | - | chr3_1:55352119-55352138 | None:intergenic | 35.0% | |
| ATTCTTTCTAGGTGTGCATT+TGG | + | chr3_1:55352322-55352341 | Msa0363170:three_prime_UTR | 35.0% | |
| ! | GTGCATTTGGAATTTCATGA+AGG | + | chr3_1:55352335-55352354 | Msa0363170:three_prime_UTR | 35.0% |
| GTGTAAAACACTGATACATG+AGG | - | chr3_1:55352493-55352512 | None:intergenic | 35.0% | |
| ! | ATGGATGTTACCATTTGTTG+AGG | + | chr3_1:55352627-55352646 | Msa0363170:three_prime_UTR | 35.0% |
| CCCTTTATATCCTCAACAAA+TGG | - | chr3_1:55352640-55352659 | None:intergenic | 35.0% | |
| AGGCTTAAATCGTGCTTGTA+TGG | + | chr3_1:55349310-55349329 | Msa0363170:exon | 40.0% | |
| TCTTGCATTGTGGACATGAT+TGG | - | chr3_1:55349529-55349548 | None:intergenic | 40.0% | |
| !! | AAGGTTAGCTTGTGATCACA+TGG | + | chr3_1:55349567-55349586 | Msa0363170:intron | 40.0% |
| TCATGGCAAAATCTGATGAG+AGG | - | chr3_1:55349613-55349632 | None:intergenic | 40.0% | |
| TGCCATGAACAAGATGAATG+TGG | + | chr3_1:55349625-55349644 | Msa0363170:intron | 40.0% | |
| TGTCGACGATTTAAGGAATG+AGG | + | chr3_1:55349692-55349711 | Msa0363170:CDS | 40.0% | |
| AATGAGGTCAAGTATGGTCA+AGG | + | chr3_1:55349708-55349727 | Msa0363170:CDS | 40.0% | |
| CAAGGAAATAATGCTAAGGC+AGG | + | chr3_1:55349726-55349745 | Msa0363170:CDS | 40.0% | |
| GAAATAATGCTAAGGCAGGA+TGG | + | chr3_1:55349730-55349749 | Msa0363170:CDS | 40.0% | |
| CAAAATCCCCATCTCACAAA+TGG | + | chr3_1:55349807-55349826 | Msa0363170:CDS | 40.0% | |
| AGTTGTCCATTTGTGAGATG+GGG | - | chr3_1:55349816-55349835 | None:intergenic | 40.0% | |
| CAGTTGTCCATTTGTGAGAT+GGG | - | chr3_1:55349817-55349836 | None:intergenic | 40.0% | |
| TGAGTATCAGAAGTAGCACA+TGG | - | chr3_1:55350383-55350402 | None:intergenic | 40.0% | |
| CAATCTGTGCAAACTACATC+AGG | + | chr3_1:55350401-55350420 | Msa0363170:CDS | 40.0% | |
| CAAACTACATCAGGTCCTTT+GGG | + | chr3_1:55350410-55350429 | Msa0363170:CDS | 40.0% | |
| ! | ACATTTTCGGATTGACCCAA+AGG | - | chr3_1:55350428-55350447 | None:intergenic | 40.0% |
| ! | TGGTTGCTTTGGATCAACAT+AGG | - | chr3_1:55350462-55350481 | None:intergenic | 40.0% |
| TATGTTGATCCAAAGCAACC+AGG | + | chr3_1:55350461-55350480 | Msa0363170:CDS | 40.0% | |
| AAGAGGATTACTGGTGCTTA+TGG | - | chr3_1:55350876-55350895 | None:intergenic | 40.0% | |
| AAGGAATTCTATCGGTCAAG+AGG | - | chr3_1:55350893-55350912 | None:intergenic | 40.0% | |
| ! | CTTCAGATTGAAAGCATGTC+CGG | + | chr3_1:55350960-55350979 | Msa0363170:intron | 40.0% |
| ATTATTACCGGTGTCCTGTT+AGG | + | chr3_1:55351029-55351048 | Msa0363170:intron | 40.0% | |
| !! | ATCAGAAGAGTGCCAGATAT+GGG | + | chr3_1:55351194-55351213 | Msa0363170:CDS | 40.0% |
| TAGCCGTTTGCTTTCTTTGT+CGG | - | chr3_1:55351330-55351349 | None:intergenic | 40.0% | |
| AAGAAAGCAAACGGCTAAAG+AGG | + | chr3_1:55351333-55351352 | Msa0363170:CDS | 40.0% | |
| GAAAAAGGAGTTGGAGTTCA+TGG | - | chr3_1:55351386-55351405 | None:intergenic | 40.0% | |
| ! | AAAGGCATACTTGAGTGACT+TGG | + | chr3_1:55351518-55351537 | Msa0363170:CDS | 40.0% |
| ! | GCTCTGAATTCTTCTTCTCT+AGG | - | chr3_1:55351560-55351579 | None:intergenic | 40.0% |
| ! | ACACAATGATGACGAGACAA+AGG | - | chr3_1:55351669-55351688 | None:intergenic | 40.0% |
| !! | AAATGATGGTTTGGTGGAAG+GGG | - | chr3_1:55352078-55352097 | None:intergenic | 40.0% |
| ! | GGGATAAAATGATGGTTTGG+TGG | - | chr3_1:55352084-55352103 | None:intergenic | 40.0% |
| !! | GTGAAGCACTGACATGAAAA+CGG | + | chr3_1:55352403-55352422 | Msa0363170:three_prime_UTR | 40.0% |
| !! | TGAAGCACTGACATGAAAAC+GGG | + | chr3_1:55352404-55352423 | Msa0363170:three_prime_UTR | 40.0% |
| ! | ACGGGACATGTAATTGACTT+TGG | + | chr3_1:55352422-55352441 | Msa0363170:three_prime_UTR | 40.0% |
| GTATGGAGGTGAGTTACTAT+CGG | + | chr3_1:55352585-55352604 | Msa0363170:three_prime_UTR | 40.0% | |
| ACTGTTGGATTAACAGCCAC+CGG | + | chr3_1:55349425-55349444 | Msa0363170:CDS | 45.0% | |
| TCAGATGATCCTCGAGTGAA+AGG | + | chr3_1:55349651-55349670 | Msa0363170:intron | 45.0% | |
| CATGTCCAGAAGATGAAGAG+AGG | - | chr3_1:55349776-55349795 | None:intergenic | 45.0% | |
| CCAGTTGTCCATTTGTGAGA+TGG | - | chr3_1:55349818-55349837 | None:intergenic | 45.0% | |
| CCATCTCACAAATGGACAAC+TGG | + | chr3_1:55349815-55349834 | Msa0363170:CDS | 45.0% | |
| TGCTGTTCCCTTCTACATCT+TGG | - | chr3_1:55350223-55350242 | None:intergenic | 45.0% | |
| GCAAACTACATCAGGTCCTT+TGG | + | chr3_1:55350409-55350428 | Msa0363170:CDS | 45.0% | |
| ! | GGCACGTGAGTGAACATTTT+CGG | - | chr3_1:55350441-55350460 | None:intergenic | 45.0% |
| AACTCTGTACCTGGTTGCTT+TGG | - | chr3_1:55350473-55350492 | None:intergenic | 45.0% | |
| TTTCAGGCTAACTCTGTACC+TGG | - | chr3_1:55350482-55350501 | None:intergenic | 45.0% | |
| !! | GCGAGTTTCTGAAATAGTCG+AGG | - | chr3_1:55350840-55350859 | None:intergenic | 45.0% |
| CTATCGGTCAAGAGGATTAC+TGG | - | chr3_1:55350885-55350904 | None:intergenic | 45.0% | |
| ATGGGTGAGTACTACACAAC+AGG | - | chr3_1:55350928-55350947 | None:intergenic | 45.0% | |
| CATTGACATGGACACCTAAC+AGG | - | chr3_1:55351046-55351065 | None:intergenic | 45.0% | |
| !! | GATCAGAAGAGTGCCAGATA+TGG | + | chr3_1:55351193-55351212 | Msa0363170:CDS | 45.0% |
| TTTACGAGAGGCTGATGTTC+CGG | - | chr3_1:55351231-55351250 | None:intergenic | 45.0% | |
| ! | GTTTGCTTTCTTTGTCGGCT+GGG | - | chr3_1:55351325-55351344 | None:intergenic | 45.0% |
| CAGCCGACAAAGAAAGCAAA+CGG | + | chr3_1:55351324-55351343 | Msa0363170:CDS | 45.0% | |
| AGTTTCAGCTCAGCAAGCAA+GGG | + | chr3_1:55351488-55351507 | Msa0363170:CDS | 45.0% | |
| ! | TCTGTAAAGCATCCCTGTCA+TGG | + | chr3_1:55351698-55351717 | Msa0363170:intron | 45.0% |
| GGTGGAAGAGTAAAGTAAGG+AGG | - | chr3_1:55352057-55352076 | None:intergenic | 45.0% | |
| AGGGGTGGAAGAGTAAAGTA+AGG | - | chr3_1:55352060-55352079 | None:intergenic | 45.0% | |
| TGAAGAACACTACAGCTAGC+AGG | + | chr3_1:55352183-55352202 | Msa0363170:CDS | 45.0% | |
| GCAAGCAACAAAGACTTCGC+CGG | - | chr3_1:55349447-55349466 | None:intergenic | 50.0% | |
| AAAGTGGGAAGGAACACTCG+TGG | - | chr3_1:55349469-55349488 | None:intergenic | 50.0% | |
| GATGATCCTCGAGTGAAAGG+AGG | + | chr3_1:55349654-55349673 | Msa0363170:intron | 50.0% | |
| TCATCACCTCCTTTCACTCG+AGG | - | chr3_1:55349663-55349682 | None:intergenic | 50.0% | |
| ATGCTAAGGCAGGATGGCAA+TGG | + | chr3_1:55349736-55349755 | Msa0363170:CDS | 50.0% | |
| TGCTAAGGCAGGATGGCAAT+GGG | + | chr3_1:55349737-55349756 | Msa0363170:CDS | 50.0% | |
| GCTGACCTCTCTTCATCTTC+TGG | + | chr3_1:55349768-55349787 | Msa0363170:CDS | 50.0% | |
| ! | CACGTGTCATTGTCAGACAC+CGG | - | chr3_1:55350982-55351001 | None:intergenic | 50.0% |
| ATGGACACCTAACAGGACAC+CGG | - | chr3_1:55351039-55351058 | None:intergenic | 50.0% | |
| !! | AGAAGAGTGCCAGATATGGG+AGG | + | chr3_1:55351197-55351216 | Msa0363170:CDS | 50.0% |
| GCAGATTCACCTCCCATATC+TGG | - | chr3_1:55351209-55351228 | None:intergenic | 50.0% | |
| GATATGGGAGGTGAATCTGC+CGG | + | chr3_1:55351209-55351228 | Msa0363170:CDS | 50.0% | |
| GGAACATCAGCCTCTCGTAA+AGG | + | chr3_1:55351230-55351249 | Msa0363170:CDS | 50.0% | |
| TGAACCAGTGCCTTTACGAG+AGG | - | chr3_1:55351243-55351262 | None:intergenic | 50.0% | |
| !! | AAAGGCACTGGTTCAACTGC+TGG | + | chr3_1:55351248-55351267 | Msa0363170:CDS | 50.0% |
| GGAGAGGGTCAAAAGAAGAG+AGG | + | chr3_1:55351293-55351312 | Msa0363170:CDS | 50.0% | |
| CGTTTGCTTTCTTTGTCGGC+TGG | - | chr3_1:55351326-55351345 | None:intergenic | 50.0% | |
| GAGTTTCAGCTCAGCAAGCA+AGG | + | chr3_1:55351487-55351506 | Msa0363170:CDS | 50.0% | |
| GCAAGCAAGGGAGAGGAAAA+AGG | + | chr3_1:55351500-55351519 | Msa0363170:CDS | 50.0% | |
| AACACTACAGCTAGCAGGAG+AGG | + | chr3_1:55352188-55352207 | Msa0363170:CDS | 50.0% | |
| AGCAACAAAGACTTCGCCGG+TGG | - | chr3_1:55349444-55349463 | None:intergenic | 55.0% | |
| TCCAGGTCTTGAGAGTGACG+AGG | + | chr3_1:55351169-55351188 | Msa0363170:intron | 55.0% | |
| TCCTCGTCACTCTCAAGACC+TGG | - | chr3_1:55351173-55351192 | None:intergenic | 55.0% | |
| ! | TCAGCCTCTCGTAAAGGCAC+TGG | + | chr3_1:55351236-55351255 | Msa0363170:CDS | 55.0% |
| TGCTGGTCCAGAACGTGTTC+AGG | + | chr3_1:55351265-55351284 | Msa0363170:CDS | 55.0% | |
| GCTGGTCCAGAACGTGTTCA+GGG | + | chr3_1:55351266-55351285 | Msa0363170:CDS | 55.0% | |
| !! | TGATGGTTTGGTGGAAGGGG+TGG | - | chr3_1:55352075-55352094 | None:intergenic | 55.0% |
| GCTAGCAGGAGAGGAAGCAA+CGG | + | chr3_1:55352197-55352216 | Msa0363170:CDS | 55.0% | |
| CCAGCACCCTGAACACGTTC+TGG | - | chr3_1:55351275-55351294 | None:intergenic | 60.0% | |
| CCAGAACGTGTTCAGGGTGC+TGG | + | chr3_1:55351272-55351291 | Msa0363170:CDS | 60.0% | |
| !! | ACGTGTTCAGGGTGCTGGAG+AGG | + | chr3_1:55351277-55351296 | Msa0363170:CDS | 60.0% |
| !! | CGTGTTCAGGGTGCTGGAGA+GGG | + | chr3_1:55351278-55351297 | Msa0363170:CDS | 60.0% |
| CAGCTCAGCAAGCAAGGGAG+AGG | + | chr3_1:55351493-55351512 | Msa0363170:CDS | 60.0% | |
| AGCAGGAGAGGAAGCAACGG+TGG | + | chr3_1:55352200-55352219 | Msa0363170:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 55349259 | 55352754 | 55349259 | ID=Msa0363170;Name=Msa0363170 |
| chr3_1 | mRNA | 55349259 | 55352754 | 55349259 | ID=Msa0363170-mRNA-1;Parent=Msa0363170;Name=Msa0363170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=70|1|1|1|1|1|6|513|313 |
| chr3_1 | exon | 55349259 | 55349569 | 55349259 | ID=Msa0363170-mRNA-1:exon:10072;Parent=Msa0363170-mRNA-1 |
| chr3_1 | exon | 55349655 | 55349836 | 55349655 | ID=Msa0363170-mRNA-1:exon:10073;Parent=Msa0363170-mRNA-1 |
| chr3_1 | exon | 55350365 | 55350482 | 55350365 | ID=Msa0363170-mRNA-1:exon:10074;Parent=Msa0363170-mRNA-1 |
| chr3_1 | exon | 55351174 | 55351354 | 55351174 | ID=Msa0363170-mRNA-1:exon:10075;Parent=Msa0363170-mRNA-1 |
| chr3_1 | exon | 55351473 | 55351629 | 55351473 | ID=Msa0363170-mRNA-1:exon:10076;Parent=Msa0363170-mRNA-1 |
| chr3_1 | exon | 55352179 | 55352754 | 55352179 | ID=Msa0363170-mRNA-1:exon:10077;Parent=Msa0363170-mRNA-1 |
| chr3_1 | five_prime_UTR | 55349259 | 55349328 | 55349259 | ID=Msa0363170-mRNA-1:five_prime_utr;Parent=Msa0363170-mRNA-1 |
| chr3_1 | CDS | 55349329 | 55349569 | 55349329 | ID=Msa0363170-mRNA-1:cds;Parent=Msa0363170-mRNA-1 |
| chr3_1 | CDS | 55349655 | 55349836 | 55349655 | ID=Msa0363170-mRNA-1:cds;Parent=Msa0363170-mRNA-1 |
| chr3_1 | CDS | 55350365 | 55350482 | 55350365 | ID=Msa0363170-mRNA-1:cds;Parent=Msa0363170-mRNA-1 |
| chr3_1 | CDS | 55351174 | 55351354 | 55351174 | ID=Msa0363170-mRNA-1:cds;Parent=Msa0363170-mRNA-1 |
| chr3_1 | CDS | 55351473 | 55351629 | 55351473 | ID=Msa0363170-mRNA-1:cds;Parent=Msa0363170-mRNA-1 |
| chr3_1 | CDS | 55352179 | 55352241 | 55352179 | ID=Msa0363170-mRNA-1:cds;Parent=Msa0363170-mRNA-1 |
| chr3_1 | three_prime_UTR | 55352242 | 55352754 | 55352242 | ID=Msa0363170-mRNA-1:three_prime_utr;Parent=Msa0363170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
