Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0140170 | sp|Q5S1U6|IFRD1_PIG | 24.887 | 442 | 265 | 14 | 16 | 432 | 41 | 440 | 4.80e-26 | 113 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0140170 | A0A072V2D3 | 96.000 | 450 | 11 | 1 | 1 | 450 | 1 | 443 | 0.0 | 884 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0010770 | Msa0140170 | 0.805356 | 1.388789e-49 | -8.615850e-47 |
Msa0026870 | Msa0140170 | 0.809802 | 1.580462e-50 | -8.615850e-47 |
Msa0038020 | Msa0140170 | 0.855635 | 5.528045e-62 | -8.615850e-47 |
Msa0042550 | Msa0140170 | 0.810299 | 1.235203e-50 | -8.615850e-47 |
Msa0052860 | Msa0140170 | 0.821502 | 3.901559e-53 | -8.615850e-47 |
Msa0055070 | Msa0140170 | 0.821393 | 4.136087e-53 | -8.615850e-47 |
Msa0072170 | Msa0140170 | 0.824876 | 6.363519e-54 | -8.615850e-47 |
Msa0085720 | Msa0140170 | 0.877927 | 4.242756e-69 | -8.615850e-47 |
Msa0090030 | Msa0140170 | 0.820794 | 5.680750e-53 | -8.615850e-47 |
Msa0101020 | Msa0140170 | 0.814466 | 1.519103e-51 | -8.615850e-47 |
Msa0108850 | Msa0140170 | 0.814071 | 1.856406e-51 | -8.615850e-47 |
Msa0108870 | Msa0140170 | 0.802539 | 5.348635e-49 | -8.615850e-47 |
Msa0119320 | Msa0140170 | 0.800335 | 1.512871e-48 | -8.615850e-47 |
Msa0120370 | Msa0140170 | -0.820483 | 6.696797e-53 | -8.615850e-47 |
Msa0120540 | Msa0140170 | 0.825094 | 5.652717e-54 | -8.615850e-47 |
Msa0124550 | Msa0140170 | 0.800641 | 1.310505e-48 | -8.615850e-47 |
Msa0128650 | Msa0140170 | 0.827210 | 1.774126e-54 | -8.615850e-47 |
Msa0139340 | Msa0140170 | -0.834526 | 2.848094e-56 | -8.615850e-47 |
Msa0140170 | Msa0140400 | 0.814244 | 1.700440e-51 | -8.615850e-47 |
Msa0140170 | Msa0145110 | 0.819184 | 1.327251e-52 | -8.615850e-47 |
Msa0140170 | Msa0151940 | 0.807985 | 3.868841e-50 | -8.615850e-47 |
Msa0140170 | Msa0151950 | 0.802338 | 5.881740e-49 | -8.615850e-47 |
Msa0140170 | Msa0163620 | -0.807949 | 3.936361e-50 | -8.615850e-47 |
Msa0140170 | Msa0173330 | 0.821347 | 4.237451e-53 | -8.615850e-47 |
Msa0140170 | Msa0174690 | 0.829948 | 3.867797e-55 | -8.615850e-47 |
Msa0140170 | Msa0175050 | 0.851234 | 1.013167e-60 | -8.615850e-47 |
Msa0140170 | Msa0177270 | 0.801175 | 1.019443e-48 | -8.615850e-47 |
Msa0140170 | Msa0178510 | 0.811872 | 5.634596e-51 | -8.615850e-47 |
Msa0140170 | Msa0193540 | 0.865923 | 4.150630e-65 | -8.615850e-47 |
Msa0140170 | Msa0198520 | 0.823876 | 1.094025e-53 | -8.615850e-47 |
Msa0140170 | Msa0198530 | 0.814393 | 1.576231e-51 | -8.615850e-47 |
Msa0140170 | Msa0208020 | 0.818117 | 2.317415e-52 | -8.615850e-47 |
Msa0140170 | Msa0208110 | 0.800229 | 1.589579e-48 | -8.615850e-47 |
Msa0140170 | Msa0208810 | 0.823335 | 1.464263e-53 | -8.615850e-47 |
Msa0140170 | Msa0210250 | 0.810195 | 1.300670e-50 | -8.615850e-47 |
Msa0140170 | Msa0227230 | 0.806338 | 8.633539e-50 | -8.615850e-47 |
Msa0140170 | Msa0233610 | 0.853762 | 1.928542e-61 | -8.615850e-47 |
Msa0140170 | Msa0235470 | 0.851361 | 9.329757e-61 | -8.615850e-47 |
Msa0140170 | Msa0244930 | 0.803241 | 3.828680e-49 | -8.615850e-47 |
Msa0140170 | Msa0250670 | 0.836961 | 6.884844e-57 | -8.615850e-47 |
Msa0140170 | Msa0252240 | 0.822643 | 2.122913e-53 | -8.615850e-47 |
Msa0140170 | Msa0259270 | 0.823537 | 1.313006e-53 | -8.615850e-47 |
Msa0140170 | Msa0264530 | 0.801597 | 8.353372e-49 | -8.615850e-47 |
Msa0140170 | Msa0266210 | 0.839698 | 1.355973e-57 | -8.615850e-47 |
Msa0140170 | Msa0266240 | 0.800888 | 1.166482e-48 | -8.615850e-47 |
Msa0140170 | Msa0274630 | 0.867765 | 1.075440e-65 | -8.615850e-47 |
Msa0140170 | Msa0279210 | -0.803615 | 3.202893e-49 | -8.615850e-47 |
Msa0140170 | Msa0281480 | 0.846260 | 2.428325e-59 | -8.615850e-47 |
Msa0140170 | Msa0287670 | 0.840210 | 9.975429e-58 | -8.615850e-47 |
Msa0140170 | Msa0288730 | 0.807119 | 5.905326e-50 | -8.615850e-47 |
Msa0140170 | Msa0289400 | 0.859118 | 5.157912e-63 | -8.615850e-47 |
Msa0140170 | Msa0295000 | -0.810190 | 1.303927e-50 | -8.615850e-47 |
Msa0140170 | Msa0307560 | 0.818401 | 1.997879e-52 | -8.615850e-47 |
Msa0140170 | Msa0312310 | 0.830917 | 2.241982e-55 | -8.615850e-47 |
Msa0140170 | Msa0314060 | 0.852897 | 3.414968e-61 | -8.615850e-47 |
Msa0140170 | Msa0320610 | 0.831296 | 1.809349e-55 | -8.615850e-47 |
Msa0140170 | Msa0322680 | 0.803921 | 2.766917e-49 | -8.615850e-47 |
Msa0140170 | Msa0329430 | 0.827853 | 1.243355e-54 | -8.615850e-47 |
Msa0140170 | Msa0342460 | -0.830880 | 2.288709e-55 | -8.615850e-47 |
Msa0140170 | Msa0362060 | 0.816383 | 5.690397e-52 | -8.615850e-47 |
Msa0140170 | Msa0363100 | 0.803935 | 2.748959e-49 | -8.615850e-47 |
Msa0140170 | Msa0363170 | 0.833933 | 4.010879e-56 | -8.615850e-47 |
Msa0140170 | Msa0370310 | 0.825213 | 5.297451e-54 | -8.615850e-47 |
Msa0140170 | Msa0370870 | 0.828711 | 7.721958e-55 | -8.615850e-47 |
Msa0140170 | Msa0377440 | 0.814682 | 1.360327e-51 | -8.615850e-47 |
Msa0140170 | Msa0388030 | -0.823064 | 1.693668e-53 | -8.615850e-47 |
Msa0140170 | Msa0390960 | 0.809486 | 1.848054e-50 | -8.615850e-47 |
Msa0140170 | Msa0404700 | 0.829497 | 4.979500e-55 | -8.615850e-47 |
Msa0140170 | Msa0410300 | 0.801892 | 7.266580e-49 | -8.615850e-47 |
Msa0140170 | Msa0417650 | 0.834462 | 2.956517e-56 | -8.615850e-47 |
Msa0140170 | Msa0417730 | 0.819781 | 9.700592e-53 | -8.615850e-47 |
Msa0140170 | Msa0431020 | 0.853000 | 3.190439e-61 | -8.615850e-47 |
Msa0140170 | Msa0442650 | 0.831593 | 1.528822e-55 | -8.615850e-47 |
Msa0140170 | Msa0461590 | 0.814187 | 1.750116e-51 | -8.615850e-47 |
Msa0140170 | Msa0462540 | 0.810635 | 1.044866e-50 | -8.615850e-47 |
Msa0140170 | Msa0464900 | 0.844018 | 9.804609e-59 | -8.615850e-47 |
Msa0140170 | Msa0482180 | 0.832376 | 9.791194e-56 | -8.615850e-47 |
Msa0140170 | Msa0519390 | 0.995562 | 1.610968e-217 | -8.615850e-47 |
Msa0140170 | Msa0530650 | 0.829586 | 4.739159e-55 | -8.615850e-47 |
Msa0140170 | Msa0537770 | 0.815403 | 9.412887e-52 | -8.615850e-47 |
Msa0140170 | Msa0573040 | 0.833936 | 4.005555e-56 | -8.615850e-47 |
Msa0140170 | Msa0578090 | 0.804437 | 2.161092e-49 | -8.615850e-47 |
Msa0140170 | Msa0587190 | 0.837735 | 4.362112e-57 | -8.615850e-47 |
Msa0140170 | Msa0614990 | 0.805680 | 1.187530e-49 | -8.615850e-47 |
Msa0140170 | Msa0615360 | 0.850047 | 2.184964e-60 | -8.615850e-47 |
Msa0140170 | Msa0620330 | 0.802295 | 6.002375e-49 | -8.615850e-47 |
Msa0140170 | Msa0621650 | 0.805047 | 1.611533e-49 | -8.615850e-47 |
Msa0140170 | Msa0626990 | 0.829498 | 4.976800e-55 | -8.615850e-47 |
Msa0140170 | Msa0627350 | 0.824103 | 9.677305e-54 | -8.615850e-47 |
Msa0140170 | Msa0628290 | 0.808681 | 2.748916e-50 | -8.615850e-47 |
Msa0140170 | Msa0628500 | 0.801482 | 8.819472e-49 | -8.615850e-47 |
Msa0140170 | Msa0643250 | 0.813712 | 2.227963e-51 | -8.615850e-47 |
Msa0140170 | Msa0653320 | -0.810254 | 1.263000e-50 | -8.615850e-47 |
Msa0140170 | Msa0662170 | 0.830368 | 3.055573e-55 | -8.615850e-47 |
Msa0140170 | Msa0664760 | 0.816502 | 5.349714e-52 | -8.615850e-47 |
Msa0140170 | Msa0679550 | 0.845858 | 3.123363e-59 | -8.615850e-47 |
Msa0140170 | Msa0682950 | 0.803377 | 3.588394e-49 | -8.615850e-47 |
Msa0140170 | Msa0693100 | 0.827137 | 1.847027e-54 | -8.615850e-47 |
Msa0140170 | Msa0715110 | 0.815720 | 7.999268e-52 | -8.615850e-47 |
Msa0140170 | Msa0724950 | 0.820277 | 7.468594e-53 | -8.615850e-47 |
Msa0140170 | Msa0735620 | -0.805071 | 1.593064e-49 | -8.615850e-47 |
Msa0140170 | Msa0737800 | 0.829138 | 6.086182e-55 | -8.615850e-47 |
Msa0140170 | Msa0748730 | 0.815886 | 7.345367e-52 | -8.615850e-47 |
Msa0140170 | Msa0757050 | 0.809113 | 2.221414e-50 | -8.615850e-47 |
Msa0140170 | Msa0763080 | 0.816065 | 6.700290e-52 | -8.615850e-47 |
Msa0140170 | Msa0764690 | 0.805464 | 1.317976e-49 | -8.615850e-47 |
Msa0140170 | Msa0798030 | 0.808574 | 2.897064e-50 | -8.615850e-47 |
Msa0140170 | Msa0817260 | 0.811058 | 8.466337e-51 | -8.615850e-47 |
Msa0140170 | Msa0817270 | 0.828834 | 7.213985e-55 | -8.615850e-47 |
Msa0140170 | Msa0827470 | 0.800332 | 1.514622e-48 | -8.615850e-47 |
Msa0140170 | Msa0845070 | 0.829847 | 4.092753e-55 | -8.615850e-47 |
Msa0140170 | Msa0849810 | 0.809452 | 1.879379e-50 | -8.615850e-47 |
Msa0140170 | Msa0853950 | 0.801329 | 9.476736e-49 | -8.615850e-47 |
Msa0140170 | Msa0881580 | 0.813957 | 1.967161e-51 | -8.615850e-47 |
Msa0140170 | Msa0908170 | 0.811734 | 6.036890e-51 | -8.615850e-47 |
Msa0140170 | Msa0922030 | 0.819232 | 1.293664e-52 | -8.615850e-47 |
Msa0140170 | Msa0944730 | 0.873601 | 1.295922e-67 | -8.615850e-47 |
Msa0140170 | Msa0981310 | 0.809634 | 1.717098e-50 | -8.615850e-47 |
Msa0140170 | Msa0993530 | 0.813219 | 2.859743e-51 | -8.615850e-47 |
Msa0140170 | Msa1010460 | 0.831786 | 1.370399e-55 | -8.615850e-47 |
Msa0140170 | Msa1012500 | 0.811799 | 5.842374e-51 | -8.615850e-47 |
Msa0140170 | Msa1021510 | 0.838611 | 2.595230e-57 | -8.615850e-47 |
Msa0140170 | Msa1031770 | 0.813553 | 2.415393e-51 | -8.615850e-47 |
Msa0140170 | Msa1032640 | 0.813448 | 2.546678e-51 | -8.615850e-47 |
Msa0140170 | Msa1039760 | 0.802760 | 4.814078e-49 | -8.615850e-47 |
Msa0140170 | Msa1040520 | 0.812823 | 3.492740e-51 | -8.615850e-47 |
Msa0140170 | Msa1048700 | 0.821064 | 4.925597e-53 | -8.615850e-47 |
Msa0140170 | Msa1056460 | 0.802379 | 5.770390e-49 | -8.615850e-47 |
Msa0140170 | Msa1070840 | 0.816758 | 4.688810e-52 | -8.615850e-47 |
Msa0140170 | Msa1072530 | -0.844830 | 5.929173e-59 | -8.615850e-47 |
Msa0140170 | Msa1096550 | 0.811905 | 5.540578e-51 | -8.615850e-47 |
Msa0140170 | Msa1098270 | 0.808588 | 2.876468e-50 | -8.615850e-47 |
Msa0140170 | Msa1105500 | 0.828779 | 7.434959e-55 | -8.615850e-47 |
Msa0140170 | Msa1118760 | 0.810935 | 8.998273e-51 | -8.615850e-47 |
Msa0140170 | Msa1127770 | 0.810351 | 1.203341e-50 | -8.615850e-47 |
Msa0140170 | Msa1128330 | 0.849389 | 3.336664e-60 | -8.615850e-47 |
Msa0140170 | Msa1130530 | 0.826194 | 3.101599e-54 | -8.615850e-47 |
Msa0140170 | Msa1130670 | -0.807527 | 4.838900e-50 | -8.615850e-47 |
Msa0140170 | Msa1133570 | 0.851397 | 9.116918e-61 | -8.615850e-47 |
Msa0140170 | Msa1135880 | 0.812206 | 4.763339e-51 | -8.615850e-47 |
Msa0140170 | Msa1148650 | 0.808993 | 2.356579e-50 | -8.615850e-47 |
Msa0140170 | Msa1158660 | 0.837567 | 4.818000e-57 | -8.615850e-47 |
Msa0140170 | Msa1165220 | 0.824666 | 7.133223e-54 | -8.615850e-47 |
Msa0140170 | Msa1174310 | 0.832525 | 8.995174e-56 | -8.615850e-47 |
Msa0140170 | Msa1174460 | -0.800769 | 1.233755e-48 | -8.615850e-47 |
Msa0140170 | Msa1182640 | 0.819859 | 9.310043e-53 | -8.615850e-47 |
Msa0140170 | Msa1202750 | 0.825880 | 3.682323e-54 | -8.615850e-47 |
Msa0140170 | Msa1215890 | 0.805075 | 1.590167e-49 | -8.615850e-47 |
Msa0140170 | Msa1215920 | 0.811730 | 6.048720e-51 | -8.615850e-47 |
Msa0140170 | Msa1229850 | 0.844695 | 6.446404e-59 | -8.615850e-47 |
Msa0140170 | Msa1235400 | 0.815316 | 9.841780e-52 | -8.615850e-47 |
Msa0140170 | Msa1241800 | 0.813061 | 3.097688e-51 | -8.615850e-47 |
Msa0140170 | Msa1258370 | 0.821754 | 3.412477e-53 | -8.615850e-47 |
Msa0140170 | Msa1272520 | 0.829821 | 4.153308e-55 | -8.615850e-47 |
Msa0140170 | Msa1280620 | 0.857504 | 1.560867e-62 | -8.615850e-47 |
Msa0140170 | Msa1294960 | 0.818203 | 2.215282e-52 | -8.615850e-47 |
Msa0140170 | Msa1300860 | 0.822034 | 2.939922e-53 | -8.615850e-47 |
Msa0140170 | Msa1310660 | 0.863432 | 2.499983e-64 | -8.615850e-47 |
Msa0140170 | Msa1314770 | 0.832594 | 8.646344e-56 | -8.615850e-47 |
Msa0140170 | Msa1341490 | 0.820197 | 7.787899e-53 | -8.615850e-47 |
Msa0140170 | Msa1350690 | 0.840570 | 8.030548e-58 | -8.615850e-47 |
Msa0140170 | Msa1359920 | 0.804535 | 2.062071e-49 | -8.615850e-47 |
Msa0140170 | Msa1360240 | 0.806510 | 7.944595e-50 | -8.615850e-47 |
Msa0140170 | Msa1360280 | 0.833545 | 5.016085e-56 | -8.615850e-47 |
Msa0140170 | Msa1363700 | 0.824170 | 9.332905e-54 | -8.615850e-47 |
Msa0140170 | Msa1371090 | 0.815148 | 1.072247e-51 | -8.615850e-47 |
Msa0140170 | Msa1371240 | 0.810172 | 1.315389e-50 | -8.615850e-47 |
Msa0140170 | Msa1372150 | 0.814331 | 1.626612e-51 | -8.615850e-47 |
Msa0140170 | Msa1390790 | 0.808349 | 3.235591e-50 | -8.615850e-47 |
Msa0140170 | Msa1400070 | 0.845986 | 2.883570e-59 | -8.615850e-47 |
Msa0140170 | Msa1402270 | 0.817307 | 3.530058e-52 | -8.615850e-47 |
Msa0140170 | Msa1415940 | 0.800027 | 1.747079e-48 | -8.615850e-47 |
Msa0140170 | Msa1422840 | 0.834636 | 2.673426e-56 | -8.615850e-47 |
Msa0140170 | Msa1426570 | 0.829328 | 5.472719e-55 | -8.615850e-47 |
Msa0140170 | Msa1435400 | 0.830753 | 2.459089e-55 | -8.615850e-47 |
Msa0140170 | Msa1440940 | 0.800088 | 1.698338e-48 | -8.615850e-47 |
Msa0140170 | Msa1445220 | 0.847370 | 1.207077e-59 | -8.615850e-47 |
Msa0140170 | Msa1449050 | 0.811612 | 6.418182e-51 | -8.615850e-47 |
Msa0140170 | Msa1458030 | 0.819100 | 1.386346e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0140170 | MtrunA17_Chr3g0134791 | 96.000 | 450 | 11 | 1 | 1 | 450 | 1 | 443 | 0.0 | 884 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0140170 | AT1G27760.3 | 56.703 | 455 | 176 | 6 | 1 | 449 | 1 | 440 | 5.83e-177 | 503 |
Msa0140170 | AT1G27760.1 | 56.264 | 455 | 174 | 7 | 1 | 449 | 1 | 436 | 4.05e-173 | 493 |
Msa0140170 | AT1G27760.2 | 56.909 | 427 | 159 | 7 | 29 | 449 | 18 | 425 | 2.10e-171 | 488 |
Find 95 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATACATTGGAACCTAATT+TGG | 0.073567 | 1_3:-74337929 | None:intergenic |
ATATGATGCAGTGCTTTATT+TGG | 0.158188 | 1_3:+74340351 | Msa0140170:three_prime_UTR |
CCAATCTTCATTGAAATTTC+AGG | 0.167869 | 1_3:-74339484 | None:intergenic |
GCCTTGTTCAAAACTGAATT+TGG | 0.179293 | 1_3:-74340031 | None:intergenic |
CCCATTGTAACAGTTGTTTC+TGG | 0.235321 | 1_3:-74336555 | None:intergenic |
GTTTCTGGTGGTTTGTTGTT+AGG | 0.258699 | 1_3:-74336540 | None:intergenic |
ATCCACAAGTAAATCAATTT+AGG | 0.266902 | 1_3:-74340601 | None:intergenic |
CTGACTATTAAGATCTTTCT+TGG | 0.273029 | 1_3:-74339292 | None:intergenic |
TCTTGAATAAGCTGTGTATT+AGG | 0.276385 | 1_3:-74336299 | None:intergenic |
ATGAAAGATGAAGAATAATT+AGG | 0.279534 | 1_3:-74336479 | None:intergenic |
ATATTCTTACAAGGATTAAA+AGG | 0.280325 | 1_3:+74339213 | Msa0140170:CDS |
ACTCTTGAAAGCATCAATTA+TGG | 0.282875 | 1_3:-74336986 | None:intergenic |
ACCGCTGCTTATTGAGTAAC+TGG | 0.290403 | 1_3:-74340060 | None:intergenic |
TATGATGCAGTGCTTTATTT+GGG | 0.309736 | 1_3:+74340352 | Msa0140170:three_prime_UTR |
TCATTCCATTGCAGGTTGTT+TGG | 0.310885 | 1_3:+74337613 | Msa0140170:intron |
TGGGGATTCAATTATTCATT+TGG | 0.317931 | 1_3:+74340371 | Msa0140170:three_prime_UTR |
TTGATGCATTAGATGTAAAA+AGG | 0.332269 | 1_3:+74336840 | Msa0140170:CDS |
CGGCCATTATTCAGTCAATA+TGG | 0.334875 | 1_3:+74340300 | Msa0140170:CDS |
ATCTAGAAGACCGGATAAAT+AGG | 0.347265 | 1_3:-74339049 | None:intergenic |
CCGCTGATTGCTGTGTTGTC+TGG | 0.353005 | 1_3:+74340411 | Msa0140170:three_prime_UTR |
TTTCTGGTGGTTTGTTGTTA+GGG | 0.357800 | 1_3:-74336539 | None:intergenic |
TGAAGAATCTGTTACCCCTT+TGG | 0.370160 | 1_3:+74337676 | Msa0140170:CDS |
CAGCTTATTCAAGATTGTTT+CGG | 0.373983 | 1_3:+74336308 | Msa0140170:five_prime_UTR |
GAACCTGTTCAGAGATATCT+TGG | 0.374329 | 1_3:+74339317 | Msa0140170:CDS |
CATACATTGGAACCTAATTT+GGG | 0.377504 | 1_3:-74337928 | None:intergenic |
AATTTCATCAAGCACTTCCT+TGG | 0.377807 | 1_3:+74339660 | Msa0140170:CDS |
AGCATCAATTATGGCTGAAA+AGG | 0.383011 | 1_3:-74336977 | None:intergenic |
CGAGTGATCCATCCCAAATT+AGG | 0.396381 | 1_3:+74337916 | Msa0140170:CDS |
ATCAAGCACTTCCTTGGAGG+GGG | 0.412529 | 1_3:+74339666 | Msa0140170:CDS |
AGATGCAAGAGTTATCTCTT+TGG | 0.428662 | 1_3:-74337509 | None:intergenic |
CCTGAAATTTCAATGAAGAT+TGG | 0.428816 | 1_3:+74339484 | Msa0140170:CDS |
CATCCATATTGACTGAATAA+TGG | 0.431054 | 1_3:-74340303 | None:intergenic |
AATCCAAGATATCTCTGAAC+AGG | 0.433115 | 1_3:-74339320 | None:intergenic |
TCTGTGGAGGCTGGTGGAAA+AGG | 0.441263 | 1_3:+74339264 | Msa0140170:CDS |
TGTATAGTTGCTGGACTGCT+TGG | 0.454319 | 1_3:+74337828 | Msa0140170:intron |
CGAAGTAGATTCGCGTACTA+CGG | 0.466555 | 1_3:+74340456 | Msa0140170:three_prime_UTR |
ACCAGAAACAACTGTTACAA+TGG | 0.475750 | 1_3:+74336554 | Msa0140170:exon |
AATGGCGAACATAGAATGTC+TGG | 0.477792 | 1_3:+74339881 | Msa0140170:CDS |
GGATGAGACATGAGTTTAAG+TGG | 0.479097 | 1_3:+74340321 | Msa0140170:exon |
GCAGTTATTAATTGAGCAGA+AGG | 0.482620 | 1_3:-74338107 | None:intergenic |
TCTGATCTCATGAATGTGTC+TGG | 0.484091 | 1_3:+74336770 | Msa0140170:CDS |
TAACAAGAGATTCATCCAAA+GGG | 0.486083 | 1_3:-74337691 | None:intergenic |
AACCTAAATTGATTTACTTG+TGG | 0.491543 | 1_3:+74340599 | Msa0140170:three_prime_UTR |
TTCATCAAGCACTTCCTTGG+AGG | 0.494607 | 1_3:+74339663 | Msa0140170:CDS |
CTTATTGAGTAACTGGGTCC+TGG | 0.494718 | 1_3:-74340053 | None:intergenic |
AGTTCAATAGCCTATTTATC+CGG | 0.495022 | 1_3:+74339039 | Msa0140170:intron |
TTTACAAGAACGAAAACAAA+GGG | 0.500771 | 1_3:-74336456 | None:intergenic |
ATCACTTGCATTCTTAGCCT+CGG | 0.503479 | 1_3:-74339154 | None:intergenic |
GGGGTTCATTAAACATATGC+AGG | 0.506623 | 1_3:+74339686 | Msa0140170:CDS |
AGAAACTAAAGACATCTTGT+AGG | 0.508490 | 1_3:-74339835 | None:intergenic |
GGTTGTTTGGCCTTGACAGT+TGG | 0.510973 | 1_3:+74337626 | Msa0140170:intron |
GTCGTGGTCTCAAATGATAC+AGG | 0.513312 | 1_3:+74339528 | Msa0140170:CDS |
TCATCAAGCACTTCCTTGGA+GGG | 0.513702 | 1_3:+74339664 | Msa0140170:CDS |
AGAAGAAACAGAGCGATCAA+TGG | 0.515869 | 1_3:+74337882 | Msa0140170:CDS |
GTCTTCTTTATCTAGAAGAC+CGG | 0.516274 | 1_3:-74339058 | None:intergenic |
CCAGAAACAACTGTTACAAT+GGG | 0.518714 | 1_3:+74336555 | Msa0140170:exon |
AATTGCTGCTGGTGAAGCAC+TGG | 0.528366 | 1_3:+74339092 | Msa0140170:CDS |
AATCAACAGGGCAGGAACTT+CGG | 0.529037 | 1_3:+74340280 | Msa0140170:intron |
TAGAATGTCTGGTGGTGAAA+AGG | 0.530016 | 1_3:+74339892 | Msa0140170:CDS |
CATCAAGCACTTCCTTGGAG+GGG | 0.533991 | 1_3:+74339665 | Msa0140170:CDS |
AATCTTTCTGTGGAGGCTGG+TGG | 0.542256 | 1_3:+74339258 | Msa0140170:CDS |
TGAAGCTGAATTCAAAACAT+TGG | 0.544268 | 1_3:+74338174 | Msa0140170:CDS |
GAAAGTTACATATTCTTACA+AGG | 0.545343 | 1_3:+74339204 | Msa0140170:CDS |
TCAAGCACTTCCTTGGAGGG+GGG | 0.547072 | 1_3:+74339667 | Msa0140170:CDS |
ACTCTTGCATCTCAAGCCAT+TGG | 0.553154 | 1_3:+74337520 | Msa0140170:CDS |
CATTGGAACCTAATTTGGGA+TGG | 0.553532 | 1_3:-74337924 | None:intergenic |
GACACATTCATGAGATCAGA+TGG | 0.557531 | 1_3:-74336767 | None:intergenic |
ATTGTAACAGTTGTTTCTGG+TGG | 0.561054 | 1_3:-74336552 | None:intergenic |
CTAACAAGAGATTCATCCAA+AGG | 0.563908 | 1_3:-74337692 | None:intergenic |
TAACTGCTGTGGTGTCTGCA+TGG | 0.566660 | 1_3:+74338123 | Msa0140170:CDS |
GTCTTCTAGATAAAGAAGAC+AGG | 0.574234 | 1_3:+74339061 | Msa0140170:CDS |
TGAATTCAAAACATTGGCAA+AGG | 0.585766 | 1_3:+74338180 | Msa0140170:CDS |
GAAATTTCAATGAAGATTGG+TGG | 0.588523 | 1_3:+74339487 | Msa0140170:CDS |
AAGAATATGTAACTTTCCTG+TGG | 0.588647 | 1_3:-74339198 | None:intergenic |
TAAGCAGCGGTTACAATCTG+AGG | 0.591489 | 1_3:+74340072 | Msa0140170:CDS |
TCAGATTGCCTACGGTAGAG+AGG | 0.593998 | 1_3:-74338154 | None:intergenic |
AGAAAGATCTTAATAGTCAG+AGG | 0.594407 | 1_3:+74339295 | Msa0140170:CDS |
ATTCAGCTTCAGATTGCCTA+CGG | 0.596364 | 1_3:-74338162 | None:intergenic |
ATGATGCAGTGCTTTATTTG+GGG | 0.609299 | 1_3:+74340353 | Msa0140170:three_prime_UTR |
CGAAAACAAAGGGAATTGAA+AGG | 0.618578 | 1_3:-74336446 | None:intergenic |
AGGTCAGTAAGAATTGCTGC+TGG | 0.620402 | 1_3:+74339081 | Msa0140170:CDS |
ATCACTACATCCAACTGTCA+AGG | 0.621289 | 1_3:-74337636 | None:intergenic |
AGCGATCAATGGACATAATG+TGG | 0.622561 | 1_3:+74337893 | Msa0140170:CDS |
TCAAGAAGAGAGTAAACCAC+AGG | 0.630235 | 1_3:+74339182 | Msa0140170:CDS |
TGCTCAATTAATAACTGCTG+TGG | 0.636366 | 1_3:+74338112 | Msa0140170:CDS |
GATGAGACATGAGTTTAAGT+GGG | 0.636453 | 1_3:+74340322 | Msa0140170:exon |
GTTTACAAGAACGAAAACAA+AGG | 0.637113 | 1_3:-74336457 | None:intergenic |
CCCAGTTACTCAATAAGCAG+CGG | 0.664075 | 1_3:+74340059 | Msa0140170:CDS |
CCGCTGCTTATTGAGTAACT+GGG | 0.664335 | 1_3:-74340059 | None:intergenic |
AACAAGAGATTCATCCAAAG+GGG | 0.670534 | 1_3:-74337690 | None:intergenic |
CCAGACAACACAGCAATCAG+CGG | 0.682498 | 1_3:-74340411 | None:intergenic |
TTTATTTAAGGGGTACCACG+AGG | 0.685031 | 1_3:+74336947 | Msa0140170:intron |
TTATTTAAGGGGTACCACGA+GGG | 0.697090 | 1_3:+74336948 | Msa0140170:intron |
ATTCTCTACAGACATCGTCG+TGG | 0.723009 | 1_3:+74339512 | Msa0140170:CDS |
GGCGAACATAGAATGTCTGG+TGG | 0.743950 | 1_3:+74339884 | Msa0140170:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTGTTAAAAAAATGAAT+CGG | - | chr1_3:74336516-74336535 | None:intergenic | 10.0% |
!!! | ATATAACTTGATTATTTTTT+AGG | + | chr1_3:74337063-74337082 | Msa0140170:intron | 10.0% |
!!! | ATCAATATTTAACTTAATGA+TGG | - | chr1_3:74336885-74336904 | None:intergenic | 15.0% |
!!! | TAAATATTGATGATTATTGA+AGG | + | chr1_3:74336894-74336913 | Msa0140170:intron | 15.0% |
!!! | TTTTCTGTTGAATTTATTTA+AGG | + | chr1_3:74336935-74336954 | Msa0140170:intron | 15.0% |
!! | TTTCTGTTGAATTTATTTAA+GGG | + | chr1_3:74336936-74336955 | Msa0140170:intron | 15.0% |
!!! | TATTTTTTAGGTTTTTGTTT+TGG | + | chr1_3:74337075-74337094 | Msa0140170:intron | 15.0% |
!!! | GAGTTTTTTTTTTTTTTTGA+AGG | - | chr1_3:74337148-74337167 | None:intergenic | 15.0% |
!! | ACATACATTATATATGAAAA+AGG | - | chr1_3:74337567-74337586 | None:intergenic | 15.0% |
!! | TATAACATCAAAAACATAAA+AGG | - | chr1_3:74337783-74337802 | None:intergenic | 15.0% |
!!! | CAAAATAAGTTGAAAAATAT+CGG | - | chr1_3:74338685-74338704 | None:intergenic | 15.0% |
!!! | CAACTTATTTTGATAATTTA+AGG | + | chr1_3:74338693-74338712 | Msa0140170:intron | 15.0% |
!! | ACTAAATTATTAGGAAAAAA+AGG | + | chr1_3:74338779-74338798 | Msa0140170:intron | 15.0% |
!! | CTAAATTATTAGGAAAAAAA+GGG | + | chr1_3:74338780-74338799 | Msa0140170:intron | 15.0% |
!!! | TTTGCTTATATTTAAGATTT+AGG | - | chr1_3:74338806-74338825 | None:intergenic | 15.0% |
!! | TCAAATAATAGTAACAATAA+GGG | - | chr1_3:74339383-74339402 | None:intergenic | 15.0% |
!! | TAAATAAATGAAAGAAAACA+AGG | - | chr1_3:74339558-74339577 | None:intergenic | 15.0% |
!!! | GTTGCTTTTTTTTTTTTTTT+TGG | + | chr1_3:74339719-74339738 | Msa0140170:intron | 15.0% |
!! | ATGAAAGATGAAGAATAATT+AGG | - | chr1_3:74336482-74336501 | None:intergenic | 20.0% |
!! | TTCTGTTGAATTTATTTAAG+GGG | + | chr1_3:74336937-74336956 | Msa0140170:intron | 20.0% |
!! | TGTTAGAAGTAAAAATGTTT+CGG | + | chr1_3:74337709-74337728 | Msa0140170:CDS | 20.0% |
!!! | ACTTTTTAAAAATGAAAGCA+TGG | - | chr1_3:74338409-74338428 | None:intergenic | 20.0% |
!!! | TTTTTCCTAATAATTTAGTC+CGG | - | chr1_3:74338778-74338797 | None:intergenic | 20.0% |
!! | ACATAATTTCACACTTATTA+AGG | - | chr1_3:74338865-74338884 | None:intergenic | 20.0% |
!!! | TGTATTTTTACTTATAGTAG+AGG | + | chr1_3:74338882-74338901 | Msa0140170:intron | 20.0% |
!! | ATATTCTTACAAGGATTAAA+AGG | + | chr1_3:74339213-74339232 | Msa0140170:CDS | 20.0% |
!! | CTCAAATAATAGTAACAATA+AGG | - | chr1_3:74339384-74339403 | None:intergenic | 20.0% |
!!! | TTGTTTAGATACTTTTTCTT+GGG | - | chr1_3:74339863-74339882 | None:intergenic | 20.0% |
!!! | ATTGTTTAGATACTTTTTCT+TGG | - | chr1_3:74339864-74339883 | None:intergenic | 20.0% |
!!! | AAGAAAAAGTATCTAAACAA+TGG | + | chr1_3:74339863-74339882 | Msa0140170:CDS | 20.0% |
!!! | CATTCTTACTATATTTTGTT+AGG | + | chr1_3:74340099-74340118 | Msa0140170:intron | 20.0% |
!!! | TAACACTGATTTTGATGATT+CGG | - | chr1_3:74336408-74336427 | None:intergenic | 25.0% |
! | TTTACAAGAACGAAAACAAA+GGG | - | chr1_3:74336459-74336478 | None:intergenic | 25.0% |
! | AAAAAATGAATCGGAATTTG+AGG | - | chr1_3:74336507-74336526 | None:intergenic | 25.0% |
! | TTGATGCATTAGATGTAAAA+AGG | + | chr1_3:74336840-74336859 | Msa0140170:CDS | 25.0% |
!! | ATATTGATGATTATTGAAGG+TGG | + | chr1_3:74336897-74336916 | Msa0140170:intron | 25.0% |
!!! | GGTACAATTTTTTGAATAAC+AGG | + | chr1_3:74337100-74337119 | Msa0140170:intron | 25.0% |
! | TCAAATATGTCAATTCAAAC+AGG | + | chr1_3:74337348-74337367 | Msa0140170:intron | 25.0% |
! | TTAAAGACATACATTACACA+AGG | - | chr1_3:74337374-74337393 | None:intergenic | 25.0% |
! | AAAACAAATAAATCACAGCA+TGG | - | chr1_3:74337421-74337440 | None:intergenic | 25.0% |
! | TGTCTTGCTTCAATAAAAAA+GGG | + | chr1_3:74337469-74337488 | Msa0140170:CDS | 25.0% |
! | AATAAAAAAGGGATCAAAGA+AGG | + | chr1_3:74337480-74337499 | Msa0140170:CDS | 25.0% |
! | TTTAGTCAAAATCTTACCAA+TGG | - | chr1_3:74337539-74337558 | None:intergenic | 25.0% |
! | ATTAAATTTCATTCCATTGC+AGG | + | chr1_3:74337605-74337624 | Msa0140170:intron | 25.0% |
! | AAAAACATAAAAGGAGAACA+GGG | - | chr1_3:74337774-74337793 | None:intergenic | 25.0% |
!!! | ATTTTAACAGATGCATACAT+TGG | - | chr1_3:74337944-74337963 | None:intergenic | 25.0% |
! | TAAATAAAGGGAAGACAAAT+GGG | - | chr1_3:74338047-74338066 | None:intergenic | 25.0% |
! | TAATTAAGTGATTTAAGCAG+TGG | - | chr1_3:74338341-74338360 | None:intergenic | 25.0% |
!! | TTGATCAATTTGAAACTGTT+TGG | + | chr1_3:74338428-74338447 | Msa0140170:intron | 25.0% |
! | AGCAACAACAAAATATAAGT+GGG | - | chr1_3:74338651-74338670 | None:intergenic | 25.0% |
!! | TAATTTAAGGTTTAGAGTCT+TGG | + | chr1_3:74338706-74338725 | Msa0140170:intron | 25.0% |
! | AATTTCACACTTATTAAGGA+TGG | - | chr1_3:74338861-74338880 | None:intergenic | 25.0% |
! | TACAAATCTATATGTAGGAT+AGG | - | chr1_3:74338961-74338980 | None:intergenic | 25.0% |
! | AGGAATACAAATCTATATGT+AGG | - | chr1_3:74338966-74338985 | None:intergenic | 25.0% |
! | GCATGGAAAATAAAATCAAT+AGG | - | chr1_3:74339019-74339038 | None:intergenic | 25.0% |
! | GAAAGTTACATATTCTTACA+AGG | + | chr1_3:74339204-74339223 | Msa0140170:CDS | 25.0% |
!!! | AGATATCTTGGATTTTTTTG+AGG | + | chr1_3:74339329-74339348 | Msa0140170:CDS | 25.0% |
!!! | TTTGTTCCTTTTAATTTGAC+TGG | + | chr1_3:74340243-74340262 | Msa0140170:intron | 25.0% |
! | AGCTGTCAAAAAATAAAGTA+GGG | - | chr1_3:74340496-74340515 | None:intergenic | 25.0% |
! | TAGCTGTCAAAAAATAAAGT+AGG | - | chr1_3:74340497-74340516 | None:intergenic | 25.0% |
!! | AACCTAAATTGATTTACTTG+TGG | + | chr1_3:74340599-74340618 | Msa0140170:three_prime_UTR | 25.0% |
! | ATCCACAAGTAAATCAATTT+AGG | - | chr1_3:74340604-74340623 | None:intergenic | 25.0% |
TCTTGAATAAGCTGTGTATT+AGG | - | chr1_3:74336302-74336321 | None:intergenic | 30.0% | |
CAGCTTATTCAAGATTGTTT+CGG | + | chr1_3:74336308-74336327 | Msa0140170:five_prime_UTR | 30.0% | |
! | AGTAGTGTTCGAATTTTGAA+TGG | + | chr1_3:74336370-74336389 | Msa0140170:five_prime_UTR | 30.0% |
GTTTACAAGAACGAAAACAA+AGG | - | chr1_3:74336460-74336479 | None:intergenic | 30.0% | |
!! | GTGTTTGTTATGTTGTGTTT+AGG | + | chr1_3:74336671-74336690 | Msa0140170:intron | 30.0% |
!! | ACTCTTGAAAGCATCAATTA+TGG | - | chr1_3:74336989-74337008 | None:intergenic | 30.0% |
!!! | TTTTAGGTTTTTGTTTTGGC+TGG | + | chr1_3:74337079-74337098 | Msa0140170:intron | 30.0% |
AAAAAAACTCACTAGACACT+AGG | + | chr1_3:74337158-74337177 | Msa0140170:intron | 30.0% | |
AAAAAACTCACTAGACACTA+GGG | + | chr1_3:74337159-74337178 | Msa0140170:intron | 30.0% | |
!! | GTTGTTTTCATAAGCTATCT+TGG | + | chr1_3:74337232-74337251 | Msa0140170:intron | 30.0% |
CTGTCTTGCTTCAATAAAAA+AGG | + | chr1_3:74337468-74337487 | Msa0140170:CDS | 30.0% | |
TAACAAGAGATTCATCCAAA+GGG | - | chr1_3:74337694-74337713 | None:intergenic | 30.0% | |
CAAAAACATAAAAGGAGAAC+AGG | - | chr1_3:74337775-74337794 | None:intergenic | 30.0% | |
!! | TCATTTTTGTGTATAGTTGC+TGG | + | chr1_3:74337819-74337838 | Msa0140170:intron | 30.0% |
!! | TTGGCTATAATCACTTTTGT+TGG | + | chr1_3:74337847-74337866 | Msa0140170:CDS | 30.0% |
!! | CTATAATCACTTTTGTTGGA+GGG | + | chr1_3:74337851-74337870 | Msa0140170:CDS | 30.0% |
CATACATTGGAACCTAATTT+GGG | - | chr1_3:74337931-74337950 | None:intergenic | 30.0% | |
AAATAAAGGGAAGACAAATG+GGG | - | chr1_3:74338046-74338065 | None:intergenic | 30.0% | |
GTAAATAAAGGGAAGACAAA+TGG | - | chr1_3:74338048-74338067 | None:intergenic | 30.0% | |
TGAAGCTGAATTCAAAACAT+TGG | + | chr1_3:74338174-74338193 | Msa0140170:CDS | 30.0% | |
TGAATTCAAAACATTGGCAA+AGG | + | chr1_3:74338180-74338199 | Msa0140170:CDS | 30.0% | |
TATATGAGTTACATCGTCTA+TGG | - | chr1_3:74338373-74338392 | None:intergenic | 30.0% | |
! | TTTTTCATCCCTCTTTCTAT+GGG | - | chr1_3:74338542-74338561 | None:intergenic | 30.0% |
!!! | TTTTTTCATCCCTCTTTCTA+TGG | - | chr1_3:74338543-74338562 | None:intergenic | 30.0% |
TGGGATTACATTTCTCTTAA+GGG | - | chr1_3:74338632-74338651 | None:intergenic | 30.0% | |
CAGCAACAACAAAATATAAG+TGG | - | chr1_3:74338652-74338671 | None:intergenic | 30.0% | |
!! | TATTTTAGATTTACTCCCTC+CGG | + | chr1_3:74338756-74338775 | Msa0140170:intron | 30.0% |
ATCTATATGTAGGATAGGTA+GGG | - | chr1_3:74338956-74338975 | None:intergenic | 30.0% | |
AATCTATATGTAGGATAGGT+AGG | - | chr1_3:74338957-74338976 | None:intergenic | 30.0% | |
GGAAAATAAAATCAATAGGC+TGG | - | chr1_3:74339015-74339034 | None:intergenic | 30.0% | |
AGTTCAATAGCCTATTTATC+CGG | + | chr1_3:74339039-74339058 | Msa0140170:intron | 30.0% | |
! | TATTGATAAATTTTCGACCG+AGG | + | chr1_3:74339137-74339156 | Msa0140170:CDS | 30.0% |
AAGAATATGTAACTTTCCTG+TGG | - | chr1_3:74339201-74339220 | None:intergenic | 30.0% | |
TCAATGCAAAAATCTTTCTG+TGG | + | chr1_3:74339248-74339267 | Msa0140170:CDS | 30.0% | |
CTGACTATTAAGATCTTTCT+TGG | - | chr1_3:74339295-74339314 | None:intergenic | 30.0% | |
AGAAAGATCTTAATAGTCAG+AGG | + | chr1_3:74339295-74339314 | Msa0140170:CDS | 30.0% | |
!!! | TGGATTTTTTTGAGGTATGT+TGG | + | chr1_3:74339337-74339356 | Msa0140170:intron | 30.0% |
!!! | ATTTTTTTGAGGTATGTTGG+TGG | + | chr1_3:74339340-74339359 | Msa0140170:intron | 30.0% |
ACTTATGAATAAGAGTCAGA+AGG | + | chr1_3:74339418-74339437 | Msa0140170:intron | 30.0% | |
! | TGATCTTTTATTGTCATGCT+AGG | + | chr1_3:74339450-74339469 | Msa0140170:intron | 30.0% |
CCAATCTTCATTGAAATTTC+AGG | - | chr1_3:74339487-74339506 | None:intergenic | 30.0% | |
CCTGAAATTTCAATGAAGAT+TGG | + | chr1_3:74339484-74339503 | Msa0140170:CDS | 30.0% | |
GAAATTTCAATGAAGATTGG+TGG | + | chr1_3:74339487-74339506 | Msa0140170:CDS | 30.0% | |
TTCATTAAACATATGCAGGT+TGG | + | chr1_3:74339690-74339709 | Msa0140170:intron | 30.0% | |
AGAAACTAAAGACATCTTGT+AGG | - | chr1_3:74339838-74339857 | None:intergenic | 30.0% | |
! | CTAAATAAGTCTTGTGATGT+CGG | + | chr1_3:74339925-74339944 | Msa0140170:intron | 30.0% |
!!! | ACCAAATTCAGTTTTGAACA+AGG | + | chr1_3:74340030-74340049 | Msa0140170:CDS | 30.0% |
AAATGCTACTGTACATCATA+CGG | - | chr1_3:74340160-74340179 | None:intergenic | 30.0% | |
AGGAATCCAGTCAAATTAAA+AGG | - | chr1_3:74340252-74340271 | None:intergenic | 30.0% | |
TTCCTTATTGTTGAATCAAC+AGG | + | chr1_3:74340267-74340286 | Msa0140170:intron | 30.0% | |
TCCTTATTGTTGAATCAACA+GGG | + | chr1_3:74340268-74340287 | Msa0140170:intron | 30.0% | |
! | CATCCATATTGACTGAATAA+TGG | - | chr1_3:74340306-74340325 | None:intergenic | 30.0% |
! | ATATGATGCAGTGCTTTATT+TGG | + | chr1_3:74340351-74340370 | Msa0140170:three_prime_UTR | 30.0% |
!! | TATGATGCAGTGCTTTATTT+GGG | + | chr1_3:74340352-74340371 | Msa0140170:three_prime_UTR | 30.0% |
TGGGGATTCAATTATTCATT+TGG | + | chr1_3:74340371-74340390 | Msa0140170:three_prime_UTR | 30.0% | |
CGAAAACAAAGGGAATTGAA+AGG | - | chr1_3:74336449-74336468 | None:intergenic | 35.0% | |
!! | TTTCTGGTGGTTTGTTGTTA+GGG | - | chr1_3:74336542-74336561 | None:intergenic | 35.0% |
!! | ATTGTAACAGTTGTTTCTGG+TGG | - | chr1_3:74336555-74336574 | None:intergenic | 35.0% |
ACCAGAAACAACTGTTACAA+TGG | + | chr1_3:74336554-74336573 | Msa0140170:exon | 35.0% | |
CCAGAAACAACTGTTACAAT+GGG | + | chr1_3:74336555-74336574 | Msa0140170:exon | 35.0% | |
ATGGGTAAACGTAAGTTTCT+AGG | + | chr1_3:74336573-74336592 | Msa0140170:intron | 35.0% | |
TGGGTAAACGTAAGTTTCTA+GGG | + | chr1_3:74336574-74336593 | Msa0140170:intron | 35.0% | |
AGCATCAATTATGGCTGAAA+AGG | - | chr1_3:74336980-74336999 | None:intergenic | 35.0% | |
AGATGCAAGAGTTATCTCTT+TGG | - | chr1_3:74337512-74337531 | None:intergenic | 35.0% | |
AACAAGAGATTCATCCAAAG+GGG | - | chr1_3:74337693-74337712 | None:intergenic | 35.0% | |
CTAACAAGAGATTCATCCAA+AGG | - | chr1_3:74337695-74337714 | None:intergenic | 35.0% | |
GAAGTAAAAATGTTTCGGTG+AGG | + | chr1_3:74337714-74337733 | Msa0140170:intron | 35.0% | |
!! | GCTATAATCACTTTTGTTGG+AGG | + | chr1_3:74337850-74337869 | Msa0140170:CDS | 35.0% |
GCATACATTGGAACCTAATT+TGG | - | chr1_3:74337932-74337951 | None:intergenic | 35.0% | |
AAGCTGAAGCGGTAAATAAA+GGG | - | chr1_3:74338059-74338078 | None:intergenic | 35.0% | |
TAAGCTGAAGCGGTAAATAA+AGG | - | chr1_3:74338060-74338079 | None:intergenic | 35.0% | |
AAAGAGTGAATAAGCTGAAG+CGG | - | chr1_3:74338070-74338089 | None:intergenic | 35.0% | |
CTTCAGCTTATTCACTCTTT+AGG | + | chr1_3:74338070-74338089 | Msa0140170:intron | 35.0% | |
GCAGTTATTAATTGAGCAGA+AGG | - | chr1_3:74338110-74338129 | None:intergenic | 35.0% | |
TGCTCAATTAATAACTGCTG+TGG | + | chr1_3:74338112-74338131 | Msa0140170:CDS | 35.0% | |
GTCGATATTATACCTCTTAC+AGG | - | chr1_3:74338280-74338299 | None:intergenic | 35.0% | |
! | TGTTTGGAGTTTCACACAAT+AGG | + | chr1_3:74338444-74338463 | Msa0140170:intron | 35.0% |
! | GTTTGGAGTTTCACACAATA+GGG | + | chr1_3:74338445-74338464 | Msa0140170:intron | 35.0% |
! | GAATAACACTTCACGCATTT+TGG | + | chr1_3:74338511-74338530 | Msa0140170:intron | 35.0% |
GTGGGATTACATTTCTCTTA+AGG | - | chr1_3:74338633-74338652 | None:intergenic | 35.0% | |
GGCAATCTATTCTATAGACT+AGG | + | chr1_3:74338727-74338746 | Msa0140170:intron | 35.0% | |
TCCTAATAATTTAGTCCGGA+GGG | - | chr1_3:74338774-74338793 | None:intergenic | 35.0% | |
TTCCTAATAATTTAGTCCGG+AGG | - | chr1_3:74338775-74338794 | None:intergenic | 35.0% | |
TAGATAAAATGTACTCCCTC+TGG | - | chr1_3:74338908-74338927 | None:intergenic | 35.0% | |
TCTATATGTAGGATAGGTAG+GGG | - | chr1_3:74338955-74338974 | None:intergenic | 35.0% | |
AAATAGGCTATTGAACTGCA+TGG | - | chr1_3:74339036-74339055 | None:intergenic | 35.0% | |
ATCTAGAAGACCGGATAAAT+AGG | - | chr1_3:74339052-74339071 | None:intergenic | 35.0% | |
GTCTTCTTTATCTAGAAGAC+CGG | - | chr1_3:74339061-74339080 | None:intergenic | 35.0% | |
GTCTTCTAGATAAAGAAGAC+AGG | + | chr1_3:74339061-74339080 | Msa0140170:CDS | 35.0% | |
!!! | CTGGCTCTAATTTTTGAGAT+TGG | + | chr1_3:74339111-74339130 | Msa0140170:CDS | 35.0% |
ATGCAAAAATCTTTCTGTGG+AGG | + | chr1_3:74339251-74339270 | Msa0140170:CDS | 35.0% | |
AATCCAAGATATCTCTGAAC+AGG | - | chr1_3:74339323-74339342 | None:intergenic | 35.0% | |
! | CTTTTATTGTCATGCTAGGA+TGG | + | chr1_3:74339454-74339473 | Msa0140170:intron | 35.0% |
AATTTCATCAAGCACTTCCT+TGG | + | chr1_3:74339660-74339679 | Msa0140170:CDS | 35.0% | |
AAGAGGGTCAGAAAAACAAA+AGG | - | chr1_3:74339789-74339808 | None:intergenic | 35.0% | |
ATCAGCAGATAACAAGTGAA+AGG | - | chr1_3:74339974-74339993 | None:intergenic | 35.0% | |
! | GCCTTGTTCAAAACTGAATT+TGG | - | chr1_3:74340034-74340053 | None:intergenic | 35.0% |
GATGAGACATGAGTTTAAGT+GGG | + | chr1_3:74340322-74340341 | Msa0140170:exon | 35.0% | |
!! | ATGATGCAGTGCTTTATTTG+GGG | + | chr1_3:74340353-74340372 | Msa0140170:three_prime_UTR | 35.0% |
!! | GTTTCTGGTGGTTTGTTGTT+AGG | - | chr1_3:74336543-74336562 | None:intergenic | 40.0% |
! | CCCATTGTAACAGTTGTTTC+TGG | - | chr1_3:74336558-74336577 | None:intergenic | 40.0% |
GACACATTCATGAGATCAGA+TGG | - | chr1_3:74336770-74336789 | None:intergenic | 40.0% | |
TCTGATCTCATGAATGTGTC+TGG | + | chr1_3:74336770-74336789 | Msa0140170:CDS | 40.0% | |
!! | TTTATTTAAGGGGTACCACG+AGG | + | chr1_3:74336947-74336966 | Msa0140170:intron | 40.0% |
!! | TTATTTAAGGGGTACCACGA+GGG | + | chr1_3:74336948-74336967 | Msa0140170:intron | 40.0% |
!! | TCTACACTTCTGAGACTGTT+CGG | - | chr1_3:74337323-74337342 | None:intergenic | 40.0% |
TCATTCCATTGCAGGTTGTT+TGG | + | chr1_3:74337613-74337632 | Msa0140170:intron | 40.0% | |
ATCACTACATCCAACTGTCA+AGG | - | chr1_3:74337639-74337658 | None:intergenic | 40.0% | |
TGAAGAATCTGTTACCCCTT+TGG | + | chr1_3:74337676-74337695 | Msa0140170:CDS | 40.0% | |
AGAAGAAACAGAGCGATCAA+TGG | + | chr1_3:74337882-74337901 | Msa0140170:CDS | 40.0% | |
AGCGATCAATGGACATAATG+TGG | + | chr1_3:74337893-74337912 | Msa0140170:CDS | 40.0% | |
CATTGGAACCTAATTTGGGA+TGG | - | chr1_3:74337927-74337946 | None:intergenic | 40.0% | |
ATTCAGCTTCAGATTGCCTA+CGG | - | chr1_3:74338165-74338184 | None:intergenic | 40.0% | |
CTCAATGCCATAGATGATGT+AGG | + | chr1_3:74338314-74338333 | Msa0140170:intron | 40.0% | |
! | TGCGTGAAGTGTTATTCTAG+TGG | - | chr1_3:74338508-74338527 | None:intergenic | 40.0% |
TTGGACTAACCCATAGAAAG+AGG | + | chr1_3:74338530-74338549 | Msa0140170:intron | 40.0% | |
TGGACTAACCCATAGAAAGA+GGG | + | chr1_3:74338531-74338550 | Msa0140170:intron | 40.0% | |
TCCCTCCGGACTAAATTATT+AGG | + | chr1_3:74338770-74338789 | Msa0140170:intron | 40.0% | |
TTACTTATAGTAGAGGCCAG+AGG | + | chr1_3:74338889-74338908 | Msa0140170:intron | 40.0% | |
TACTTATAGTAGAGGCCAGA+GGG | + | chr1_3:74338890-74338909 | Msa0140170:intron | 40.0% | |
!! | TTCCTTGTGTAGCTGTTTCT+TGG | + | chr1_3:74338981-74339000 | Msa0140170:intron | 40.0% |
AAATCAATAGGCTGGAACCA+AGG | - | chr1_3:74339007-74339026 | None:intergenic | 40.0% | |
ATCACTTGCATTCTTAGCCT+CGG | - | chr1_3:74339157-74339176 | None:intergenic | 40.0% | |
TCAAGAAGAGAGTAAACCAC+AGG | + | chr1_3:74339182-74339201 | Msa0140170:CDS | 40.0% | |
AAAAATCTTTCTGTGGAGGC+TGG | + | chr1_3:74339255-74339274 | Msa0140170:CDS | 40.0% | |
GAACCTGTTCAGAGATATCT+TGG | + | chr1_3:74339317-74339336 | Msa0140170:CDS | 40.0% | |
GGGGTTCATTAAACATATGC+AGG | + | chr1_3:74339686-74339705 | Msa0140170:CDS | 40.0% | |
! | ACAAGCTTTTGACAGCAACT+AGG | - | chr1_3:74339747-74339766 | None:intergenic | 40.0% |
AAGTCGTTGTCCTAATACCA+CGG | - | chr1_3:74339815-74339834 | None:intergenic | 40.0% | |
AATGGCGAACATAGAATGTC+TGG | + | chr1_3:74339881-74339900 | Msa0140170:CDS | 40.0% | |
! | TAGAATGTCTGGTGGTGAAA+AGG | + | chr1_3:74339892-74339911 | Msa0140170:CDS | 40.0% |
AGTGAAAGGAGAAAATCCAG+CGG | - | chr1_3:74339960-74339979 | None:intergenic | 40.0% | |
! | ACCTATTCTTTTACGTGCAG+AGG | + | chr1_3:74339996-74340015 | Msa0140170:intron | 40.0% |
TCCTCTGCACGTAAAAGAAT+AGG | - | chr1_3:74340000-74340019 | None:intergenic | 40.0% | |
!!! | ATTCAGTTTTGAACAAGGCC+AGG | + | chr1_3:74340035-74340054 | Msa0140170:CDS | 40.0% |
!! | GCCCTGTTGATTCAACAATA+AGG | - | chr1_3:74340272-74340291 | None:intergenic | 40.0% |
TATTGTTGAATCAACAGGGC+AGG | + | chr1_3:74340272-74340291 | Msa0140170:intron | 40.0% | |
CGGCCATTATTCAGTCAATA+TGG | + | chr1_3:74340300-74340319 | Msa0140170:CDS | 40.0% | |
GGATGAGACATGAGTTTAAG+TGG | + | chr1_3:74340321-74340340 | Msa0140170:exon | 40.0% | |
!!! | TGAAAAGGCATTTTCCCTCG+TGG | - | chr1_3:74336965-74336984 | None:intergenic | 45.0% |
!! | CTAGACACTAGGGCATTGTT+TGG | + | chr1_3:74337169-74337188 | Msa0140170:intron | 45.0% |
!! | CTACACTTCTGAGACTGTTC+GGG | - | chr1_3:74337322-74337341 | None:intergenic | 45.0% |
ACTCTTGCATCTCAAGCCAT+TGG | + | chr1_3:74337520-74337539 | Msa0140170:CDS | 45.0% | |
TGTATAGTTGCTGGACTGCT+TGG | + | chr1_3:74337828-74337847 | Msa0140170:intron | 45.0% | |
CGAGTGATCCATCCCAAATT+AGG | + | chr1_3:74337916-74337935 | Msa0140170:CDS | 45.0% | |
! | TCTTTTCTCCTCTCTACCGT+AGG | + | chr1_3:74338146-74338165 | Msa0140170:CDS | 45.0% |
! | CCTCTTACAGGAAGCATGAA+TGG | - | chr1_3:74338268-74338287 | None:intergenic | 45.0% |
CCATTCATGCTTCCTGTAAG+AGG | + | chr1_3:74338265-74338284 | Msa0140170:intron | 45.0% | |
CAGTGGTCCTACATCATCTA+TGG | - | chr1_3:74338324-74338343 | None:intergenic | 45.0% | |
GAGTTACATCGTCTATGGAC+TGG | - | chr1_3:74338368-74338387 | None:intergenic | 45.0% | |
AGGTCAGTAAGAATTGCTGC+TGG | + | chr1_3:74339081-74339100 | Msa0140170:CDS | 45.0% | |
ATTCTCTACAGACATCGTCG+TGG | + | chr1_3:74339512-74339531 | Msa0140170:CDS | 45.0% | |
GTCGTGGTCTCAAATGATAC+AGG | + | chr1_3:74339528-74339547 | Msa0140170:CDS | 45.0% | |
TTCATCAAGCACTTCCTTGG+AGG | + | chr1_3:74339663-74339682 | Msa0140170:CDS | 45.0% | |
TCATCAAGCACTTCCTTGGA+GGG | + | chr1_3:74339664-74339683 | Msa0140170:CDS | 45.0% | |
! | TAAGTCTTGTGATGTCGGTG+AGG | + | chr1_3:74339930-74339949 | Msa0140170:intron | 45.0% |
CTTATTGAGTAACTGGGTCC+TGG | - | chr1_3:74340056-74340075 | None:intergenic | 45.0% | |
CCGCTGCTTATTGAGTAACT+GGG | - | chr1_3:74340062-74340081 | None:intergenic | 45.0% | |
CCCAGTTACTCAATAAGCAG+CGG | + | chr1_3:74340059-74340078 | Msa0140170:CDS | 45.0% | |
ACCGCTGCTTATTGAGTAAC+TGG | - | chr1_3:74340063-74340082 | None:intergenic | 45.0% | |
TAAGCAGCGGTTACAATCTG+AGG | + | chr1_3:74340072-74340091 | Msa0140170:CDS | 45.0% | |
GCATAAATGACAGCGAAGCA+AGG | - | chr1_3:74340186-74340205 | None:intergenic | 45.0% | |
AATCAACAGGGCAGGAACTT+CGG | + | chr1_3:74340280-74340299 | Msa0140170:intron | 45.0% | |
CGAAGTAGATTCGCGTACTA+CGG | + | chr1_3:74340456-74340475 | Msa0140170:three_prime_UTR | 45.0% | |
CAAGGCCAAACAACCTGCAA+TGG | - | chr1_3:74337621-74337640 | None:intergenic | 50.0% | |
!! | GGTTGTTTGGCCTTGACAGT+TGG | + | chr1_3:74337626-74337645 | Msa0140170:intron | 50.0% |
TAACTGCTGTGGTGTCTGCA+TGG | + | chr1_3:74338123-74338142 | Msa0140170:CDS | 50.0% | |
TCAGATTGCCTACGGTAGAG+AGG | - | chr1_3:74338157-74338176 | None:intergenic | 50.0% | |
GGCCAAGAAACAGCTACACA+AGG | - | chr1_3:74338986-74339005 | None:intergenic | 50.0% | |
!! | GTGTAGCTGTTTCTTGGCCT+TGG | + | chr1_3:74338987-74339006 | Msa0140170:intron | 50.0% |
AATTGCTGCTGGTGAAGCAC+TGG | + | chr1_3:74339092-74339111 | Msa0140170:CDS | 50.0% | |
AATCTTTCTGTGGAGGCTGG+TGG | + | chr1_3:74339258-74339277 | Msa0140170:CDS | 50.0% | |
CATCAAGCACTTCCTTGGAG+GGG | + | chr1_3:74339665-74339684 | Msa0140170:CDS | 50.0% | |
ATCAAGCACTTCCTTGGAGG+GGG | + | chr1_3:74339666-74339685 | Msa0140170:CDS | 50.0% | |
GTTTAATGAACCCCCCTCCA+AGG | - | chr1_3:74339680-74339699 | None:intergenic | 50.0% | |
CCTAATACCACGGAGGAAGA+GGG | - | chr1_3:74339805-74339824 | None:intergenic | 50.0% | |
TCCTAATACCACGGAGGAAG+AGG | - | chr1_3:74339806-74339825 | None:intergenic | 50.0% | |
TCGTTGTCCTAATACCACGG+AGG | - | chr1_3:74339812-74339831 | None:intergenic | 50.0% | |
GGCGAACATAGAATGTCTGG+TGG | + | chr1_3:74339884-74339903 | Msa0140170:CDS | 50.0% | |
CCAGACAACACAGCAATCAG+CGG | - | chr1_3:74340414-74340433 | None:intergenic | 50.0% | |
TCTGTGGAGGCTGGTGGAAA+AGG | + | chr1_3:74339264-74339283 | Msa0140170:CDS | 55.0% | |
TCAAGCACTTCCTTGGAGGG+GGG | + | chr1_3:74339667-74339686 | Msa0140170:CDS | 55.0% | |
TTTCTGACCCTCTTCCTCCG+TGG | + | chr1_3:74339795-74339814 | Msa0140170:intron | 55.0% | |
CCCTCTTCCTCCGTGGTATT+AGG | + | chr1_3:74339802-74339821 | Msa0140170:intron | 55.0% | |
! | CCGCTGATTGCTGTGTTGTC+TGG | + | chr1_3:74340411-74340430 | Msa0140170:three_prime_UTR | 55.0% |
ATGTCGGTGAGGACTTCCGC+TGG | + | chr1_3:74339941-74339960 | Msa0140170:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 74336270 | 74340653 | 74336270 | ID=Msa0140170;Name=Msa0140170 |
chr1_3 | mRNA | 74336270 | 74340653 | 74336270 | ID=Msa0140170-mRNA-1;Parent=Msa0140170;Name=Msa0140170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=303|0.91|0.92|1|1|1|13|320|450 |
chr1_3 | exon | 74336270 | 74336582 | 74336270 | ID=Msa0140170-mRNA-1:exon:25854;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74336693 | 74336861 | 74336693 | ID=Msa0140170-mRNA-1:exon:25855;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74336957 | 74337037 | 74336957 | ID=Msa0140170-mRNA-1:exon:25856;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74337447 | 74337541 | 74337447 | ID=Msa0140170-mRNA-1:exon:25857;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74337627 | 74337730 | 74337627 | ID=Msa0140170-mRNA-1:exon:25858;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74337835 | 74337945 | 74337835 | ID=Msa0140170-mRNA-1:exon:25859;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74338092 | 74338222 | 74338092 | ID=Msa0140170-mRNA-1:exon:25860;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74339041 | 74339350 | 74339041 | ID=Msa0140170-mRNA-1:exon:25861;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74339472 | 74339549 | 74339472 | ID=Msa0140170-mRNA-1:exon:25862;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74339657 | 74339707 | 74339657 | ID=Msa0140170-mRNA-1:exon:25863;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74339824 | 74339913 | 74339824 | ID=Msa0140170-mRNA-1:exon:25864;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74340016 | 74340093 | 74340016 | ID=Msa0140170-mRNA-1:exon:25865;Parent=Msa0140170-mRNA-1 |
chr1_3 | exon | 74340289 | 74340653 | 74340289 | ID=Msa0140170-mRNA-1:exon:25866;Parent=Msa0140170-mRNA-1 |
chr1_3 | five_prime_UTR | 74336270 | 74336572 | 74336270 | ID=Msa0140170-mRNA-1:five_prime_utr;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74336573 | 74336582 | 74336573 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74336693 | 74336861 | 74336693 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74336957 | 74337037 | 74336957 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74337447 | 74337541 | 74337447 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74337627 | 74337730 | 74337627 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74337835 | 74337945 | 74337835 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74338092 | 74338222 | 74338092 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74339041 | 74339350 | 74339041 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74339472 | 74339549 | 74339472 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74339657 | 74339707 | 74339657 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74339824 | 74339913 | 74339824 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74340016 | 74340093 | 74340016 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | CDS | 74340289 | 74340333 | 74340289 | ID=Msa0140170-mRNA-1:cds;Parent=Msa0140170-mRNA-1 |
chr1_3 | three_prime_UTR | 74340334 | 74340653 | 74340334 | ID=Msa0140170-mRNA-1:three_prime_utr;Parent=Msa0140170-mRNA-1 |
Gene Sequence |
Protein sequence |