Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120370 | XP_013468000.1 | 90.160 | 376 | 11 | 1 | 1 | 350 | 1 | 376 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120370 | A0A072VJQ4 | 90.160 | 376 | 11 | 1 | 1 | 350 | 1 | 376 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0120370 | 0.804309 | 2.297685e-49 | -8.615850e-47 |
| Msa0038020 | Msa0120370 | -0.800897 | 1.161449e-48 | -8.615850e-47 |
| Msa0120370 | Msa0140170 | -0.820483 | 6.696797e-53 | -8.615850e-47 |
| Msa0120370 | Msa0163620 | 0.989660 | 4.383724e-179 | -8.615850e-47 |
| Msa0120370 | Msa0173330 | -0.804202 | 2.418982e-49 | -8.615850e-47 |
| Msa0120370 | Msa0279210 | 0.812034 | 5.194758e-51 | -8.615850e-47 |
| Msa0120370 | Msa0281480 | -0.801019 | 1.097098e-48 | -8.615850e-47 |
| Msa0120370 | Msa0320610 | -0.802356 | 5.832765e-49 | -8.615850e-47 |
| Msa0120370 | Msa0363100 | -0.806453 | 8.167284e-50 | -8.615850e-47 |
| Msa0120370 | Msa0363170 | -0.826850 | 2.163230e-54 | -8.615850e-47 |
| Msa0120370 | Msa0388030 | 0.852737 | 3.793910e-61 | -8.615850e-47 |
| Msa0120370 | Msa0388040 | 0.809729 | 1.638674e-50 | -8.615850e-47 |
| Msa0120370 | Msa0404700 | -0.815184 | 1.053055e-51 | -8.615850e-47 |
| Msa0120370 | Msa0462540 | -0.822857 | 1.892445e-53 | -8.615850e-47 |
| Msa0120370 | Msa0464900 | -0.824043 | 9.997265e-54 | -8.615850e-47 |
| Msa0120370 | Msa0519390 | -0.815939 | 7.148431e-52 | -8.615850e-47 |
| Msa0120370 | Msa0617410 | 0.800904 | 1.158015e-48 | -8.615850e-47 |
| Msa0120370 | Msa0628290 | -0.801854 | 7.398967e-49 | -8.615850e-47 |
| Msa0120370 | Msa0737800 | -0.812298 | 4.548534e-51 | -8.615850e-47 |
| Msa0120370 | Msa0799060 | -0.808315 | 3.289871e-50 | -8.615850e-47 |
| Msa0120370 | Msa0817270 | -0.811796 | 5.853448e-51 | -8.615850e-47 |
| Msa0120370 | Msa0864470 | 0.801391 | 9.203841e-49 | -8.615850e-47 |
| Msa0120370 | Msa0891600 | 0.802695 | 4.966270e-49 | -8.615850e-47 |
| Msa0120370 | Msa0930400 | 0.812197 | 4.784768e-51 | -8.615850e-47 |
| Msa0120370 | Msa0944730 | -0.806945 | 6.427212e-50 | -8.615850e-47 |
| Msa0120370 | Msa0946690 | 0.807687 | 4.474365e-50 | -8.615850e-47 |
| Msa0120370 | Msa0963090 | 0.804420 | 2.178705e-49 | -8.615850e-47 |
| Msa0120370 | Msa1029080 | 0.828812 | 7.300560e-55 | -8.615850e-47 |
| Msa0120370 | Msa1072530 | 0.802550 | 5.319930e-49 | -8.615850e-47 |
| Msa0120370 | Msa1103660 | 0.811080 | 8.371102e-51 | -8.615850e-47 |
| Msa0120370 | Msa1130670 | 0.802165 | 6.386757e-49 | -8.615850e-47 |
| Msa0120370 | Msa1156170 | 0.827752 | 1.315433e-54 | -8.615850e-47 |
| Msa0120370 | Msa1229850 | -0.820503 | 6.625860e-53 | -8.615850e-47 |
| Msa0120370 | Msa1236070 | 0.823388 | 1.423176e-53 | -8.615850e-47 |
| Msa0120370 | Msa1272520 | -0.810405 | 1.171492e-50 | -8.615850e-47 |
| Msa0120370 | Msa1310660 | -0.803758 | 2.992306e-49 | -8.615850e-47 |
| Msa0120370 | Msa1449350 | 0.800200 | 1.611491e-48 | -8.615850e-47 |
| Msa0120370 | Msa1459760 | 0.811569 | 6.557236e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120370 | MtrunA17_Chr1g0178721 | 90.160 | 376 | 11 | 1 | 1 | 350 | 1 | 376 | 0.0 | 694 |
| Msa0120370 | MtrunA17_Chr1g0178741 | 84.309 | 376 | 33 | 1 | 1 | 350 | 26 | 401 | 0.0 | 653 |
| Msa0120370 | MtrunA17_Chr1g0171181 | 50.147 | 341 | 114 | 3 | 33 | 347 | 1 | 311 | 1.95e-118 | 345 |
| Msa0120370 | MtrunA17_Chr2g0321341 | 48.094 | 341 | 145 | 4 | 33 | 347 | 2 | 336 | 4.12e-116 | 340 |
| Msa0120370 | MtrunA17_Chr2g0321351 | 43.210 | 324 | 150 | 5 | 51 | 347 | 28 | 344 | 1.41e-87 | 268 |
| Msa0120370 | MtrunA17_Chr4g0026421 | 41.643 | 353 | 158 | 8 | 33 | 347 | 1 | 343 | 6.26e-86 | 263 |
| Msa0120370 | MtrunA17_Chr3g0136021 | 40.066 | 302 | 149 | 4 | 73 | 347 | 130 | 426 | 1.41e-73 | 234 |
| Msa0120370 | MtrunA17_Chr4g0029971 | 25.067 | 375 | 208 | 11 | 38 | 349 | 86 | 450 | 2.79e-24 | 103 |
| Msa0120370 | MtrunA17_Chr7g0263721 | 24.332 | 337 | 198 | 9 | 67 | 349 | 151 | 484 | 1.10e-21 | 95.9 |
| Msa0120370 | MtrunA17_Chr2g0321371 | 43.662 | 71 | 36 | 1 | 281 | 347 | 1 | 71 | 5.35e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120370 | AT3G48410.1 | 57.923 | 366 | 124 | 3 | 8 | 347 | 10 | 371 | 3.17e-151 | 431 |
| Msa0120370 | AT3G48410.2 | 57.923 | 366 | 124 | 3 | 8 | 347 | 52 | 413 | 7.82e-151 | 431 |
| Msa0120370 | AT2G36290.1 | 58.453 | 349 | 116 | 2 | 31 | 350 | 15 | 363 | 8.50e-151 | 429 |
| Msa0120370 | AT2G36290.2 | 58.213 | 347 | 116 | 2 | 33 | 350 | 3 | 349 | 4.71e-149 | 424 |
| Msa0120370 | AT1G74300.1 | 58.359 | 329 | 110 | 2 | 46 | 347 | 16 | 344 | 2.17e-143 | 409 |
| Msa0120370 | AT1G74280.1 | 54.878 | 328 | 121 | 2 | 47 | 347 | 34 | 361 | 5.13e-133 | 384 |
| Msa0120370 | AT1G74290.1 | 50.000 | 364 | 147 | 4 | 9 | 343 | 1 | 358 | 8.91e-129 | 374 |
| Msa0120370 | AT3G54240.1 | 46.939 | 343 | 155 | 2 | 33 | 349 | 5 | 346 | 1.66e-120 | 352 |
| Msa0120370 | AT5G22460.2 | 45.455 | 341 | 156 | 3 | 33 | 347 | 2 | 338 | 9.58e-110 | 324 |
| Msa0120370 | AT5G22460.3 | 45.455 | 341 | 156 | 3 | 33 | 347 | 2 | 338 | 9.58e-110 | 324 |
| Msa0120370 | AT5G22460.1 | 45.455 | 341 | 156 | 3 | 33 | 347 | 2 | 338 | 9.58e-110 | 324 |
| Msa0120370 | AT1G74300.2 | 56.327 | 245 | 81 | 1 | 129 | 347 | 1 | 245 | 1.67e-98 | 292 |
| Msa0120370 | AT3G03240.1 | 42.244 | 303 | 140 | 6 | 71 | 345 | 35 | 330 | 6.42e-77 | 240 |
| Msa0120370 | AT3G03230.1 | 43.092 | 304 | 135 | 7 | 71 | 345 | 35 | 329 | 3.49e-75 | 235 |
| Msa0120370 | AT3G44510.2 | 38.689 | 305 | 152 | 4 | 73 | 347 | 8 | 307 | 7.52e-69 | 219 |
| Msa0120370 | AT1G08310.2 | 37.785 | 307 | 159 | 4 | 68 | 347 | 5 | 306 | 6.27e-68 | 216 |
| Msa0120370 | AT1G08310.1 | 38.111 | 307 | 155 | 5 | 68 | 347 | 5 | 303 | 1.73e-66 | 213 |
| Msa0120370 | AT1G08310.3 | 38.793 | 232 | 108 | 6 | 68 | 271 | 5 | 230 | 1.33e-40 | 143 |
| Msa0120370 | AT3G44510.3 | 39.196 | 199 | 90 | 3 | 73 | 245 | 8 | 201 | 1.64e-39 | 140 |
| Msa0120370 | AT3G44510.1 | 35.165 | 182 | 112 | 2 | 170 | 347 | 22 | 201 | 9.50e-35 | 127 |
| Msa0120370 | AT3G44510.5 | 35.165 | 182 | 112 | 2 | 170 | 347 | 22 | 201 | 9.50e-35 | 127 |
| Msa0120370 | AT3G44510.4 | 35.165 | 182 | 112 | 2 | 170 | 347 | 22 | 201 | 9.50e-35 | 127 |
| Msa0120370 | AT3G09690.1 | 24.779 | 339 | 191 | 7 | 68 | 348 | 160 | 492 | 4.00e-22 | 97.8 |
| Msa0120370 | AT3G09690.2 | 24.779 | 339 | 191 | 7 | 68 | 348 | 160 | 492 | 4.00e-22 | 97.8 |
| Msa0120370 | AT5G02970.1 | 23.691 | 363 | 221 | 7 | 40 | 348 | 129 | 489 | 3.00e-21 | 95.1 |
Find 135 sgRNAs with CRISPR-Local
Find 394 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGATGTTGTTAAGGAATT+AGG | 0.119593 | 1_3:-45074799 | Msa0120370:CDS |
| CCATCTCTTAGTTTGATTCT+TGG | 0.143000 | 1_3:+45075037 | None:intergenic |
| CCAGTAATCACACTAAAATT+TGG | 0.175854 | 1_3:+45074115 | None:intergenic |
| CTCCACCGTGATTTAAATAT+TGG | 0.211155 | 1_3:-45073316 | Msa0120370:CDS |
| CATTAGCAGTGTTGTTTATT+GGG | 0.217421 | 1_3:-45075141 | Msa0120370:CDS |
| AAAACCAATGACATAGAATT+TGG | 0.233953 | 1_3:+45074657 | None:intergenic |
| ACATTAGCAGTGTTGTTTAT+TGG | 0.237727 | 1_3:-45075142 | Msa0120370:CDS |
| AGAAGATTTGTTGGCCCTTC+TGG | 0.238734 | 1_3:+45077575 | None:intergenic |
| GCATTTGATGGAGGATTGTT+AGG | 0.260738 | 1_3:-45072762 | Msa0120370:three_prime_UTR |
| TTGATTCTTGGTGCTGTTAT+AGG | 0.262071 | 1_3:+45075049 | None:intergenic |
| CGTGATTTAAATATTGGATT+TGG | 0.285521 | 1_3:-45073310 | Msa0120370:CDS |
| GCGTCGGCATTTATCATCTT+TGG | 0.286518 | 1_3:-45073022 | Msa0120370:three_prime_UTR |
| ATGAAGGTTCTGTTCATCTT+TGG | 0.289079 | 1_3:-45073240 | Msa0120370:CDS |
| ATTGGTCATGCAATTTCATT+TGG | 0.296395 | 1_3:+45074203 | None:intergenic |
| GCATGGAGATGAAGATATTA+TGG | 0.301895 | 1_3:-45073218 | Msa0120370:CDS |
| GAACCTTCATTGTTTGGAAA+TGG | 0.313934 | 1_3:+45073253 | None:intergenic |
| AGGATGTTGTTAAGGAATTA+GGG | 0.314598 | 1_3:-45074798 | Msa0120370:CDS |
| TGAACAGAACCTTCATTGTT+TGG | 0.321816 | 1_3:+45073247 | None:intergenic |
| ATGCAATTTCATTTGGGAAT+AGG | 0.323079 | 1_3:+45074210 | None:intergenic |
| ATGCTCTTTAACGTACGATT+TGG | 0.323126 | 1_3:+45074724 | None:intergenic |
| TATAGAAAATTACGGGTGAT+AGG | 0.332100 | 1_3:+45074903 | None:intergenic |
| TCACTCACACCATCAGCATT+AGG | 0.353928 | 1_3:+45073112 | None:intergenic |
| GGCAAGCTCTTCTATATCTA+AGG | 0.355031 | 1_3:+45074699 | None:intergenic |
| AGAAGAGCTTGCCGATCAAT+TGG | 0.361536 | 1_3:-45074689 | Msa0120370:CDS |
| TAAATATTGGATTTGGAAGA+TGG | 0.363591 | 1_3:-45073303 | Msa0120370:CDS |
| TGAATCTTTACATGATCAAT+AGG | 0.364089 | 1_3:-45072590 | Msa0120370:three_prime_UTR |
| CAGTAATCACACTAAAATTT+GGG | 0.367452 | 1_3:+45074116 | None:intergenic |
| GCTTCGGCCGTTAAGTTTGC+AGG | 0.370202 | 1_3:+45074232 | None:intergenic |
| TCGTAAATGAATGCATTTGA+TGG | 0.384455 | 1_3:-45072774 | Msa0120370:three_prime_UTR |
| CTTGCCGATCAATTGGGATT+GGG | 0.401337 | 1_3:-45074682 | Msa0120370:CDS |
| CACTTGCAGGCATGACGCTT+TGG | 0.401773 | 1_3:-45074936 | Msa0120370:CDS |
| TCAATAGGCGCCTTGCTGTT+AGG | 0.402360 | 1_3:-45072575 | Msa0120370:three_prime_UTR |
| AGAGCTTGTAACTAAGTTGA+TGG | 0.403717 | 1_3:-45074062 | Msa0120370:CDS |
| TGTTTATTGGGGTTCTAGCA+TGG | 0.403951 | 1_3:-45075129 | Msa0120370:CDS |
| ACACGCCATGGCTAACATAC+TGG | 0.404122 | 1_3:-45074159 | Msa0120370:CDS |
| GGGTCCAAATTCTATGTCAT+TGG | 0.407370 | 1_3:-45074661 | Msa0120370:intron |
| TTCTCTTAACAAATGAATCA+AGG | 0.407413 | 1_3:+45072681 | None:intergenic |
| ATCAGGAGAGCCACATACTT+TGG | 0.411608 | 1_3:+45075078 | None:intergenic |
| TCTTGTTTCGAAAGGATGTC+TGG | 0.420380 | 1_3:+45074088 | None:intergenic |
| CACTCACACCATCAGCATTA+GGG | 0.421844 | 1_3:+45073113 | None:intergenic |
| TTGTTAAGAGAAAATTCAAT+TGG | 0.422569 | 1_3:-45072670 | Msa0120370:three_prime_UTR |
| GTTAAGTTTGCAGGAAGATC+AGG | 0.425710 | 1_3:+45074241 | None:intergenic |
| CTGAAAAGAAGAAGATTTGT+TGG | 0.426482 | 1_3:+45077566 | None:intergenic |
| TCAGGAGAGCCACATACTTT+GGG | 0.427545 | 1_3:+45075079 | None:intergenic |
| GGGAAGAGGTGGCCAGATCC+TGG | 0.429510 | 1_3:+45073133 | None:intergenic |
| TTTCATTTGGGAATAGGCTT+CGG | 0.430276 | 1_3:+45074216 | None:intergenic |
| GTTTATTGGGGTTCTAGCAT+GGG | 0.432543 | 1_3:-45075128 | Msa0120370:CDS |
| TGTATCGGTCACCGGCTATC+CGG | 0.433382 | 1_3:-45073050 | Msa0120370:three_prime_UTR |
| GCTTGCCGATCAATTGGGAT+TGG | 0.439212 | 1_3:-45074683 | Msa0120370:CDS |
| ATTCACTACCATGAACTTCC+AGG | 0.442710 | 1_3:-45073151 | Msa0120370:CDS |
| GCTCAAAGTTTATCATATAG+AGG | 0.443839 | 1_3:+45072969 | None:intergenic |
| ACTAAGAGATGGAAGGCATT+TGG | 0.447348 | 1_3:-45075026 | Msa0120370:CDS |
| TTGGTCATGCAATTTCATTT+GGG | 0.449054 | 1_3:+45074204 | None:intergenic |
| GCTTGCCCAGGATGTTGTTA+AGG | 0.451047 | 1_3:-45074806 | Msa0120370:intron |
| TCCATGGTATCAACACTTGC+AGG | 0.459625 | 1_3:-45074949 | Msa0120370:CDS |
| TACCATGAACTTCCAGGATC+TGG | 0.460945 | 1_3:-45073145 | Msa0120370:CDS |
| AAATATTGGATTTGGAAGAT+GGG | 0.467038 | 1_3:-45073302 | Msa0120370:CDS |
| AATCCATTTCCAAACAATGA+AGG | 0.474443 | 1_3:-45073256 | Msa0120370:CDS |
| AAGATGGGAATATACACCTT+TGG | 0.477397 | 1_3:-45073287 | Msa0120370:CDS |
| CATTTGATGGAGGATTGTTA+GGG | 0.479944 | 1_3:-45072761 | Msa0120370:three_prime_UTR |
| TGATCTTCCTGCAAACTTAA+CGG | 0.480686 | 1_3:-45074239 | Msa0120370:CDS |
| GCTGTTATAGGTGGTCCATC+AGG | 0.480952 | 1_3:+45075061 | None:intergenic |
| ATAGAAAATTACGGGTGATA+GGG | 0.484130 | 1_3:+45074904 | None:intergenic |
| AATGAAATTGCATGACCAAT+GGG | 0.485786 | 1_3:-45074200 | Msa0120370:CDS |
| CAGAGAGTTCAAACTGAAGA+TGG | 0.486671 | 1_3:-45072997 | Msa0120370:three_prime_UTR |
| TTTAAAATTTAACAGAAGCT+GGG | 0.488669 | 1_3:-45072902 | Msa0120370:three_prime_UTR |
| GGCCAGATCCTGGAAGTTCA+TGG | 0.494202 | 1_3:+45073143 | None:intergenic |
| GAAGAGCTTGCCGATCAATT+GGG | 0.497312 | 1_3:-45074688 | Msa0120370:CDS |
| TAGCTCCAGTCGTCAACTAC+TGG | 0.500593 | 1_3:-45074267 | Msa0120370:CDS |
| TGTTAAGAGAAAATTCAATT+GGG | 0.502772 | 1_3:-45072669 | Msa0120370:three_prime_UTR |
| TTTCTTACAACAATGGCCAC+TGG | 0.505102 | 1_3:-45077639 | Msa0120370:exon |
| TCCTTTGATAGACCTGGTTA+CGG | 0.505551 | 1_3:-45074763 | Msa0120370:CDS |
| TTTAACGTACGATTTGGATC+GGG | 0.515423 | 1_3:+45074730 | None:intergenic |
| CACCTCTTCCCTAATGCTGA+TGG | 0.515464 | 1_3:-45073121 | Msa0120370:CDS |
| ATGTATCGTTGTAGTGTGAC+AGG | 0.520150 | 1_3:+45073193 | None:intergenic |
| CTTTAACGTACGATTTGGAT+CGG | 0.520977 | 1_3:+45074729 | None:intergenic |
| GGTTCTGTTCATCTTTGGCA+TGG | 0.521605 | 1_3:-45073235 | Msa0120370:CDS |
| CACCATCAGCATTAGGGAAG+AGG | 0.523364 | 1_3:+45073119 | None:intergenic |
| TTGCCGATCAATTGGGATTG+GGG | 0.524605 | 1_3:-45074681 | Msa0120370:CDS |
| GCTCTTTGTCTTGTTTCGAA+AGG | 0.526126 | 1_3:+45074080 | None:intergenic |
| GCGCAACACGAAGCGCCCAT+TGG | 0.527286 | 1_3:+45074185 | None:intergenic |
| TAGGCGCCTTGCTGTTAGGT+TGG | 0.527769 | 1_3:-45072571 | None:intergenic |
| AAATGAAATTGCATGACCAA+TGG | 0.528987 | 1_3:-45074201 | Msa0120370:CDS |
| AGAGAAAATTCAATTGGGAG+GGG | 0.530755 | 1_3:-45072664 | Msa0120370:three_prime_UTR |
| CAAATCCAATATTTAAATCA+CGG | 0.531733 | 1_3:+45073311 | None:intergenic |
| AAGAGAAAATTCAATTGGGA+GGG | 0.532081 | 1_3:-45072665 | Msa0120370:three_prime_UTR |
| AAAGTATGTGGCTCTCCTGA+TGG | 0.532692 | 1_3:-45075076 | Msa0120370:CDS |
| TATAAAATCATCTATGTCCA+TGG | 0.533222 | 1_3:-45074965 | Msa0120370:CDS |
| ATTAGCAGTGTTGTTTATTG+GGG | 0.534811 | 1_3:-45075140 | Msa0120370:CDS |
| CGACGCTAACACCGGATAGC+CGG | 0.540300 | 1_3:+45073039 | None:intergenic |
| ATGATAAACTTTGAGCAATG+TGG | 0.541257 | 1_3:-45072962 | Msa0120370:three_prime_UTR |
| CCAAGAATCAAACTAAGAGA+TGG | 0.548477 | 1_3:-45075037 | Msa0120370:CDS |
| ATTGTATCCTTTGATAGACC+TGG | 0.548650 | 1_3:-45074769 | Msa0120370:CDS |
| TAAGAGAAAATTCAATTGGG+AGG | 0.549114 | 1_3:-45072666 | Msa0120370:three_prime_UTR |
| GGCCACCAGTAGTTGACGAC+TGG | 0.552181 | 1_3:+45074262 | None:intergenic |
| GGACCCCAATCCCAATTGAT+CGG | 0.554953 | 1_3:+45074678 | None:intergenic |
| GGATCACTTTCTCCGTAACC+AGG | 0.558675 | 1_3:+45074751 | None:intergenic |
| ATAAATGCCGACGCTAACAC+CGG | 0.559779 | 1_3:+45073031 | None:intergenic |
| CAATATTTAAATCACGGTGG+AGG | 0.564703 | 1_3:+45073317 | None:intergenic |
| CACAAAGTGCATGTTCATGT+AGG | 0.569805 | 1_3:+45072822 | None:intergenic |
| CGGCTATCCGGTGTTAGCGT+CGG | 0.570068 | 1_3:-45073038 | Msa0120370:three_prime_UTR |
| CAGCTCGTTCTCACACCAGA+AGG | 0.572309 | 1_3:-45077590 | Msa0120370:CDS |
| AAAGTGCATGTTCATGTAGG+TGG | 0.572373 | 1_3:+45072825 | None:intergenic |
| TAAATGAATGCATTTGATGG+AGG | 0.573271 | 1_3:-45072771 | Msa0120370:three_prime_UTR |
| ATTCTTGGTGCTGTTATAGG+TGG | 0.577130 | 1_3:+45075052 | None:intergenic |
| GAGCCACATACTTTGGGAGG+AGG | 0.579969 | 1_3:+45075085 | None:intergenic |
| GCTCCTCCTCCCAAAGTATG+TGG | 0.583919 | 1_3:-45075088 | Msa0120370:CDS |
| GGAAAATAAAGAGAATTATG+TGG | 0.587730 | 1_3:-45074041 | Msa0120370:intron |
| ATCTCTATCGAGGAACATGT+TGG | 0.590212 | 1_3:+45072623 | None:intergenic |
| ACTGGTGGAACACTCAAAGA+TGG | 0.597899 | 1_3:-45074141 | Msa0120370:CDS |
| TTCCACCAGTATGTTAGCCA+TGG | 0.599195 | 1_3:+45074154 | None:intergenic |
| TGATAAACTTTGAGCAATGT+GGG | 0.602932 | 1_3:-45072961 | Msa0120370:three_prime_UTR |
| ACATCGCGCAAAACCTTCCG+TGG | 0.606359 | 1_3:-45073174 | Msa0120370:CDS |
| CTTTGAGCAATGTGGGCTGT+AGG | 0.612917 | 1_3:-45072954 | Msa0120370:three_prime_UTR |
| CGCCATGGCTAACATACTGG+TGG | 0.613077 | 1_3:-45074156 | Msa0120370:CDS |
| TCCGTAACCAGGTCTATCAA+AGG | 0.615706 | 1_3:+45074762 | None:intergenic |
| CTCCAGTCGTCAACTACTGG+TGG | 0.617432 | 1_3:-45074264 | Msa0120370:CDS |
| CATGGTAGTGAATCCACGGA+AGG | 0.618391 | 1_3:+45073161 | None:intergenic |
| AGTTCATGGTAGTGAATCCA+CGG | 0.620512 | 1_3:+45073157 | None:intergenic |
| TTTCTAGGGTGAGGGGTATG+CGG | 0.620550 | 1_3:-45072710 | Msa0120370:three_prime_UTR |
| AATTACGGGTGATAGGGTGT+TGG | 0.623286 | 1_3:+45074910 | None:intergenic |
| ACATGTTGGACATATAAGAC+AGG | 0.623350 | 1_3:+45072637 | None:intergenic |
| CATCAGCATTAGGGAAGAGG+TGG | 0.623642 | 1_3:+45073122 | None:intergenic |
| GAATCAAACTAAGAGATGGA+AGG | 0.623906 | 1_3:-45075033 | Msa0120370:CDS |
| TAATGCTGATGGTGTGAGTG+AGG | 0.627115 | 1_3:-45073110 | Msa0120370:CDS |
| GGAGAGCCACATACTTTGGG+AGG | 0.630582 | 1_3:+45075082 | None:intergenic |
| GCCTGCAAGTGTTGATACCA+TGG | 0.637681 | 1_3:+45074948 | None:intergenic |
| AGCTCGTTCTCACACCAGAA+GGG | 0.638872 | 1_3:-45077589 | Msa0120370:CDS |
| GGATGTTGTTAAGGAATTAG+GGG | 0.640316 | 1_3:-45074797 | Msa0120370:CDS |
| CAGAAGCAGATAAGACAACA+AGG | 0.640633 | 1_3:-45073352 | Msa0120370:CDS |
| CATTTGGCATACAAAGAGCA+TGG | 0.641716 | 1_3:-45075010 | Msa0120370:CDS |
| GTGTTGCGCACTACACGCCA+TGG | 0.662267 | 1_3:-45074171 | Msa0120370:CDS |
| ACATATCCAACCTAACAGCA+AGG | 0.667776 | 1_3:+45072565 | None:intergenic |
| ATCCAATATTTAAATCACGG+TGG | 0.678229 | 1_3:+45073314 | None:intergenic |
| ACTGTGACTAATCTCTATCG+AGG | 0.705798 | 1_3:+45072613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTAAAACATAAATTA+TGG | + | chr1_3:45075058-45075077 | None:intergenic | 10.0% |
| !! | ATTATAATATAGAAAATTAC+GGG | + | chr1_3:45075379-45075398 | None:intergenic | 10.0% |
| !!! | TAAATTTATAACTTTTTATG+TGG | - | chr1_3:45076894-45076913 | Msa0120370:intron | 10.0% |
| !!! | TGTATTTTGATATTTACTTA+TGG | - | chr1_3:45075024-45075043 | Msa0120370:CDS | 15.0% |
| !! | ATTATGACTATGAAAATAAT+TGG | - | chr1_3:45076639-45076658 | Msa0120370:intron | 15.0% |
| !! | TAAAACTAATTTACTATTAG+TGG | + | chr1_3:45076697-45076716 | None:intergenic | 15.0% |
| !!! | TTTTTAGTTATTTTCTTTCT+AGG | - | chr1_3:45077547-45077566 | Msa0120370:intron | 15.0% |
| !!! | TTTTAGTTATTTTCTTTCTA+GGG | - | chr1_3:45077548-45077567 | Msa0120370:intron | 15.0% |
| !!! | TTTTACCATTCAAATTTGAA+TGG | - | chr1_3:45072792-45072811 | Msa0120370:three_prime_UTR | 20.0% |
| !! | TTTACCATTCAAATTTGAAT+GGG | - | chr1_3:45072793-45072812 | Msa0120370:three_prime_UTR | 20.0% |
| !! | AGAAAAGATTAGAATGAATA+TGG | - | chr1_3:45072851-45072870 | Msa0120370:three_prime_UTR | 20.0% |
| !! | TGATATCAATATCATTGAAA+AGG | - | chr1_3:45073733-45073752 | Msa0120370:intron | 20.0% |
| !! | GATATCAATATCATTGAAAA+GGG | - | chr1_3:45073734-45073753 | Msa0120370:intron | 20.0% |
| !!! | TAATTGTAATTTGTCTATTC+TGG | + | chr1_3:45074432-45074451 | None:intergenic | 20.0% |
| !! | TAGCTATAAATCTCATATTA+AGG | + | chr1_3:45074968-45074987 | None:intergenic | 20.0% |
| !! | GTTTGTAATTCCAAATTAAA+AGG | + | chr1_3:45075090-45075109 | None:intergenic | 20.0% |
| !! | TTATAAGCTTGTAGTTAATT+TGG | - | chr1_3:45075899-45075918 | Msa0120370:intron | 20.0% |
| !! | ATAGAAGAAAACTACAAATA+AGG | + | chr1_3:45075938-45075957 | None:intergenic | 20.0% |
| !! | TACATGTGTTTATATTCTTA+TGG | - | chr1_3:45076380-45076399 | Msa0120370:intron | 20.0% |
| !! | AATAATTTGAAAACAGCTTA+TGG | + | chr1_3:45076585-45076604 | None:intergenic | 20.0% |
| !! | TCTGTATTCATAAATTATCT+TGG | + | chr1_3:45076620-45076639 | None:intergenic | 20.0% |
| !! | CAAATCCAATATTTAAATCA+CGG | + | chr1_3:45076964-45076983 | None:intergenic | 20.0% |
| !!! | TTTTAAAATTTAACAGAAGC+TGG | - | chr1_3:45077369-45077388 | Msa0120370:intron | 20.0% |
| !!! | TTTAAAATTTAACAGAAGCT+GGG | - | chr1_3:45077370-45077389 | Msa0120370:intron | 20.0% |
| !! | TTGTTAAGAGAAAATTCAAT+TGG | - | chr1_3:45077602-45077621 | Msa0120370:CDS | 20.0% |
| !! | TGTTAAGAGAAAATTCAATT+GGG | - | chr1_3:45077603-45077622 | Msa0120370:CDS | 20.0% |
| !! | TCATTCTTTTCTTACAACAA+TGG | - | chr1_3:45072626-45072645 | Msa0120370:three_prime_UTR | 25.0% |
| ! | AGAATATGAAAACTATCCAT+TGG | + | chr1_3:45073202-45073221 | None:intergenic | 25.0% |
| !!! | ATATTGCTACTTTTTTCCTA+GGG | + | chr1_3:45073484-45073503 | None:intergenic | 25.0% |
| !!! | AATATTGCTACTTTTTTCCT+AGG | + | chr1_3:45073485-45073504 | None:intergenic | 25.0% |
| !!! | AAGTAGCAATATTTTTAGAG+TGG | - | chr1_3:45073492-45073511 | Msa0120370:intron | 25.0% |
| ! | AGTTGCTTAAATCATTGTAT+AGG | + | chr1_3:45074145-45074164 | None:intergenic | 25.0% |
| !! | CAAATTACAATTAGTTTCCA+AGG | - | chr1_3:45074439-45074458 | Msa0120370:intron | 25.0% |
| ! | AATTACAAATGTAATCCTGA+AGG | - | chr1_3:45074636-45074655 | Msa0120370:intron | 25.0% |
| ! | TATTTGTATTCGGAAATCAA+AGG | - | chr1_3:45074693-45074712 | Msa0120370:CDS | 25.0% |
| ! | TCATGACTAAAAACAATTGT+TGG | + | chr1_3:45074930-45074949 | None:intergenic | 25.0% |
| !!! | TATGTATCTGCCTTTTAATT+TGG | - | chr1_3:45075077-45075096 | Msa0120370:CDS | 25.0% |
| ! | TATAAAATCATCTATGTCCA+TGG | - | chr1_3:45075307-45075326 | Msa0120370:intron | 25.0% |
| ! | AAAACCAATGACATAGAATT+TGG | + | chr1_3:45075618-45075637 | None:intergenic | 25.0% |
| ! | ACTTATTAGAGTTTATCTAC+TGG | - | chr1_3:45075714-45075733 | Msa0120370:intron | 25.0% |
| !!! | TGTTTTGATATAAGCTATCT+TGG | + | chr1_3:45075829-45075848 | None:intergenic | 25.0% |
| ! | AACTACAAATAAGGTATGTT+TGG | + | chr1_3:45075929-45075948 | None:intergenic | 25.0% |
| ! | CAGTAATCACACTAAAATTT+GGG | + | chr1_3:45076159-45076178 | None:intergenic | 25.0% |
| ! | GGAAAATAAAGAGAATTATG+TGG | - | chr1_3:45076231-45076250 | Msa0120370:intron | 25.0% |
| ! | GAATATAAACACATGTATCA+CGG | + | chr1_3:45076377-45076396 | None:intergenic | 25.0% |
| ! | AAAAATAAACACATGCATCA+TGG | + | chr1_3:45076413-45076432 | None:intergenic | 25.0% |
| ! | TTCATGAATGACTTCAAAAA+CGG | + | chr1_3:45076464-45076483 | None:intergenic | 25.0% |
| ! | TATTATGCTCAATTGAATTG+AGG | + | chr1_3:45076776-45076795 | None:intergenic | 25.0% |
| !!! | ATAATATGTCTTGTTTCGAT+TGG | - | chr1_3:45076845-45076864 | Msa0120370:intron | 25.0% |
| ! | CGTGATTTAAATATTGGATT+TGG | - | chr1_3:45076962-45076981 | Msa0120370:intron | 25.0% |
| ! | TAAATATTGGATTTGGAAGA+TGG | - | chr1_3:45076969-45076988 | Msa0120370:intron | 25.0% |
| ! | AAATATTGGATTTGGAAGAT+GGG | - | chr1_3:45076970-45076989 | Msa0120370:intron | 25.0% |
| !!! | TGTTGTTTTTGAGATGTATT+TGG | - | chr1_3:45077394-45077413 | Msa0120370:intron | 25.0% |
| ! | TTCTCTTAACAAATGAATCA+AGG | + | chr1_3:45077594-45077613 | None:intergenic | 25.0% |
| ! | TGAATCTTTACATGATCAAT+AGG | - | chr1_3:45077682-45077701 | Msa0120370:five_prime_UTR | 25.0% |
| ! | AATTTTTCTACTAACTCCAG+TGG | + | chr1_3:45072652-45072671 | None:intergenic | 30.0% |
| CTGAAAAGAAGAAGATTTGT+TGG | + | chr1_3:45072709-45072728 | None:intergenic | 30.0% | |
| GATGAAGTTTATATACATGC+TGG | - | chr1_3:45072967-45072986 | Msa0120370:three_prime_UTR | 30.0% | |
| AGTATCAATCTTCAACTTGT+GGG | + | chr1_3:45073069-45073088 | None:intergenic | 30.0% | |
| AAGTATCAATCTTCAACTTG+TGG | + | chr1_3:45073070-45073089 | None:intergenic | 30.0% | |
| AATAGAAGCTTGTAATGAGA+TGG | - | chr1_3:45073097-45073116 | Msa0120370:CDS | 30.0% | |
| !! | CAAAACCTGTTTTTCATGAA+CGG | + | chr1_3:45073263-45073282 | None:intergenic | 30.0% |
| TGTAGAATGCTATGTAATCA+AGG | - | chr1_3:45073454-45073473 | Msa0120370:intron | 30.0% | |
| !!! | TATTGCTACTTTTTTCCTAG+GGG | + | chr1_3:45073483-45073502 | None:intergenic | 30.0% |
| CGGTTATAGTAATTCCAATT+GGG | + | chr1_3:45073537-45073556 | None:intergenic | 30.0% | |
| ACGGTTATAGTAATTCCAAT+TGG | + | chr1_3:45073538-45073557 | None:intergenic | 30.0% | |
| AATTCTTCTCTAGATCTACA+CGG | + | chr1_3:45073557-45073576 | None:intergenic | 30.0% | |
| ACATTTACTTAACGACCATT+AGG | + | chr1_3:45073714-45073733 | None:intergenic | 30.0% | |
| GCCATCTTAAAATTCTTTCT+GGG | + | chr1_3:45073905-45073924 | None:intergenic | 30.0% | |
| TGCCATCTTAAAATTCTTTC+TGG | + | chr1_3:45073906-45073925 | None:intergenic | 30.0% | |
| ATAAATGAGGAGGATTGTAT+AGG | - | chr1_3:45074015-45074034 | Msa0120370:intron | 30.0% | |
| TTTCCTTCATTGTGAGTTAA+AGG | + | chr1_3:45074227-45074246 | None:intergenic | 30.0% | |
| ! | TTGCCTTTGCTATCATTAAA+GGG | + | chr1_3:45074282-45074301 | None:intergenic | 30.0% |
| ! | ATTGCCTTTGCTATCATTAA+AGG | + | chr1_3:45074283-45074302 | None:intergenic | 30.0% |
| AGGAAATATTGAGACAATAG+AGG | - | chr1_3:45074573-45074592 | Msa0120370:intron | 30.0% | |
| !! | ACAATAGAGGTATTCATGAA+TGG | - | chr1_3:45074586-45074605 | Msa0120370:intron | 30.0% |
| AATGGAATTAGTGCAATTAG+AGG | - | chr1_3:45074604-45074623 | Msa0120370:intron | 30.0% | |
| TGTGAGTGTCTATTTGTATT+CGG | - | chr1_3:45074683-45074702 | Msa0120370:CDS | 30.0% | |
| AATTACATTATGCTGAACAC+AGG | + | chr1_3:45074997-45075016 | None:intergenic | 30.0% | |
| ! | ATTTGGAATTACAAACTCTC+AGG | - | chr1_3:45075094-45075113 | Msa0120370:CDS | 30.0% |
| !! | ACATTAGCAGTGTTGTTTAT+TGG | - | chr1_3:45075130-45075149 | Msa0120370:CDS | 30.0% |
| !! | CATTAGCAGTGTTGTTTATT+GGG | - | chr1_3:45075131-45075150 | Msa0120370:CDS | 30.0% |
| !! | ATTAGCAGTGTTGTTTATTG+GGG | - | chr1_3:45075132-45075151 | Msa0120370:CDS | 30.0% |
| ATAGAAAATTACGGGTGATA+GGG | + | chr1_3:45075371-45075390 | None:intergenic | 30.0% | |
| TATAGAAAATTACGGGTGAT+AGG | + | chr1_3:45075372-45075391 | None:intergenic | 30.0% | |
| TAATTCCTTAACAACATCCT+GGG | + | chr1_3:45075474-45075493 | None:intergenic | 30.0% | |
| AGGATGTTGTTAAGGAATTA+GGG | - | chr1_3:45075474-45075493 | Msa0120370:intron | 30.0% | |
| !!! | TATGTCATTGGTTTTTCCAT+GGG | - | chr1_3:45075623-45075642 | Msa0120370:intron | 30.0% |
| !!! | CTAACTTTTTCAATACTGAC+AGG | - | chr1_3:45075963-45075982 | Msa0120370:intron | 30.0% |
| ATGCAATTTCATTTGGGAAT+AGG | + | chr1_3:45076065-45076084 | None:intergenic | 30.0% | |
| TTGGTCATGCAATTTCATTT+GGG | + | chr1_3:45076071-45076090 | None:intergenic | 30.0% | |
| ATTGGTCATGCAATTTCATT+TGG | + | chr1_3:45076072-45076091 | None:intergenic | 30.0% | |
| AAATGAAATTGCATGACCAA+TGG | - | chr1_3:45076071-45076090 | Msa0120370:intron | 30.0% | |
| AATGAAATTGCATGACCAAT+GGG | - | chr1_3:45076072-45076091 | Msa0120370:intron | 30.0% | |
| CCAGTAATCACACTAAAATT+TGG | + | chr1_3:45076160-45076179 | None:intergenic | 30.0% | |
| !! | CCAAATTTTAGTGTGATTAC+TGG | - | chr1_3:45076157-45076176 | Msa0120370:intron | 30.0% |
| ! | CTTTTAGATGATCGCAAATT+TGG | - | chr1_3:45076265-45076284 | Msa0120370:intron | 30.0% |
| !! | ATTTTGCTGATCGTTTTGAT+TGG | - | chr1_3:45076319-45076338 | Msa0120370:intron | 30.0% |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr1_3:45076504-45076523 | None:intergenic | 30.0% | |
| AGCATTTATGAGACTGTTTA+TGG | - | chr1_3:45076541-45076560 | Msa0120370:intron | 30.0% | |
| AAATTATCTTGGAGAGCTTA+TGG | + | chr1_3:45076609-45076628 | None:intergenic | 30.0% | |
| ATCCAATATTTAAATCACGG+TGG | + | chr1_3:45076961-45076980 | None:intergenic | 30.0% | |
| AATCCATTTCCAAACAATGA+AGG | - | chr1_3:45077016-45077035 | Msa0120370:intron | 30.0% | |
| !!! | GCTATCATTAAGTCACTTTT+AGG | - | chr1_3:45077184-45077203 | Msa0120370:intron | 30.0% |
| ! | TGTGAAATAGGCTTTTGTAT+CGG | - | chr1_3:45077207-45077226 | Msa0120370:intron | 30.0% |
| GCTCAAAGTTTATCATATAG+AGG | + | chr1_3:45077306-45077325 | None:intergenic | 30.0% | |
| ATGATAAACTTTGAGCAATG+TGG | - | chr1_3:45077310-45077329 | Msa0120370:intron | 30.0% | |
| TGATAAACTTTGAGCAATGT+GGG | - | chr1_3:45077311-45077330 | Msa0120370:intron | 30.0% | |
| TCGTAAATGAATGCATTTGA+TGG | - | chr1_3:45077498-45077517 | Msa0120370:intron | 30.0% | |
| TAAATGAATGCATTTGATGG+AGG | - | chr1_3:45077501-45077520 | Msa0120370:intron | 30.0% | |
| !!! | TTATTTTCTTTCTAGGGTGA+GGG | - | chr1_3:45077554-45077573 | Msa0120370:intron | 30.0% |
| TAAGAGAAAATTCAATTGGG+AGG | - | chr1_3:45077606-45077625 | Msa0120370:CDS | 30.0% | |
| AAGAGAAAATTCAATTGGGA+GGG | - | chr1_3:45077607-45077626 | Msa0120370:CDS | 30.0% | |
| ACGACCCATTCAAATTTGAA+TGG | + | chr1_3:45072800-45072819 | None:intergenic | 35.0% | |
| GTTCTTCAGCTTTACAATTG+TGG | - | chr1_3:45072823-45072842 | Msa0120370:three_prime_UTR | 35.0% | |
| CTGTACTAGTTCAGTTAGTT+AGG | - | chr1_3:45072997-45073016 | Msa0120370:three_prime_UTR | 35.0% | |
| TATCAATCTTCAACTTGTGG+GGG | + | chr1_3:45073067-45073086 | None:intergenic | 35.0% | |
| GTATCAATCTTCAACTTGTG+GGG | + | chr1_3:45073068-45073087 | None:intergenic | 35.0% | |
| TCATGAGATTGATTGTCATG+CGG | + | chr1_3:45073232-45073251 | None:intergenic | 35.0% | |
| TTTGTCCGTTCATGAAAAAC+AGG | - | chr1_3:45073255-45073274 | Msa0120370:CDS | 35.0% | |
| ! | AAACAGGTTTTGCAGTATTG+TGG | - | chr1_3:45073271-45073290 | Msa0120370:CDS | 35.0% |
| TATAGTAATTCCAATTGGGC+TGG | + | chr1_3:45073533-45073552 | None:intergenic | 35.0% | |
| ! | TTCAGGGAATTTTCTTCAGT+GGG | + | chr1_3:45073580-45073599 | None:intergenic | 35.0% |
| !! | TTGAAAGGTTTACTGGTTCA+GGG | + | chr1_3:45073596-45073615 | None:intergenic | 35.0% |
| TCACTACTTGAAAGGTTTAC+TGG | + | chr1_3:45073603-45073622 | None:intergenic | 35.0% | |
| !! | ACTAGCCTTGGATAGAAATT+GGG | - | chr1_3:45073653-45073672 | Msa0120370:intron | 35.0% |
| CTCACTTTACTTTCTGTCTT+GGG | + | chr1_3:45073827-45073846 | None:intergenic | 35.0% | |
| !! | GCCCAGAAAGAATTTTAAGA+TGG | - | chr1_3:45073901-45073920 | Msa0120370:intron | 35.0% |
| TTATGCCAAAGTTGTTGTCA+AGG | - | chr1_3:45073933-45073952 | Msa0120370:intron | 35.0% | |
| AGTATCCTTGACAACAACTT+TGG | + | chr1_3:45073941-45073960 | None:intergenic | 35.0% | |
| TACAATCCTCCTCATTTATG+CGG | + | chr1_3:45074014-45074033 | None:intergenic | 35.0% | |
| ATAGGAGTAAGTTGTGATGT+TGG | - | chr1_3:45074033-45074052 | Msa0120370:intron | 35.0% | |
| GAATGCTAAGCTCAAATGTA+AGG | - | chr1_3:45074087-45074106 | Msa0120370:CDS | 35.0% | |
| GTATAGGCTAATACAGAGAA+TGG | + | chr1_3:45074129-45074148 | None:intergenic | 35.0% | |
| TTCATTGTGAGTTAAAGGAG+GGG | + | chr1_3:45074222-45074241 | None:intergenic | 35.0% | |
| CTTCATTGTGAGTTAAAGGA+GGG | + | chr1_3:45074223-45074242 | None:intergenic | 35.0% | |
| TTGCTAAAATGGCTACTATG+AGG | + | chr1_3:45074312-45074331 | None:intergenic | 35.0% | |
| !! | CATTTTAGCAACCTGACAAA+CGG | - | chr1_3:45074321-45074340 | Msa0120370:intron | 35.0% |
| TCTATTCTGGACAAACTTGT+TGG | + | chr1_3:45074419-45074438 | None:intergenic | 35.0% | |
| GAACAGAGAATTAAAAGCCT+TGG | + | chr1_3:45074459-45074478 | None:intergenic | 35.0% | |
| AGATGGATAGGATAAAGTAG+TGG | - | chr1_3:45074722-45074741 | Msa0120370:CDS | 35.0% | |
| ! | ATAGGATAAAGTAGTGGAGT+GGG | - | chr1_3:45074728-45074747 | Msa0120370:CDS | 35.0% |
| ! | ATGAGGAAGGATCTTTTGAA+TGG | - | chr1_3:45074790-45074809 | Msa0120370:CDS | 35.0% |
| ! | TGAGGAAGGATCTTTTGAAT+GGG | - | chr1_3:45074791-45074810 | Msa0120370:CDS | 35.0% |
| TGAATGGGAAAATCTTCTCA+TGG | - | chr1_3:45074806-45074825 | Msa0120370:intron | 35.0% | |
| TCTAGAGACTAGAAACTAAC+AGG | - | chr1_3:45074840-45074859 | Msa0120370:intron | 35.0% | |
| AACAAGACTCAGATGACTAT+AGG | - | chr1_3:45074870-45074889 | Msa0120370:intron | 35.0% | |
| ATCTCATATTAAGGCCAACA+GGG | + | chr1_3:45074959-45074978 | None:intergenic | 35.0% | |
| AATCTCATATTAAGGCCAAC+AGG | + | chr1_3:45074960-45074979 | None:intergenic | 35.0% | |
| !! | TTGATTCTTGGTGCTGTTAT+AGG | + | chr1_3:45075226-45075245 | None:intergenic | 35.0% |
| ! | CCATCTCTTAGTTTGATTCT+TGG | + | chr1_3:45075238-45075257 | None:intergenic | 35.0% |
| CCAAGAATCAAACTAAGAGA+TGG | - | chr1_3:45075235-45075254 | Msa0120370:intron | 35.0% | |
| GAATCAAACTAAGAGATGGA+AGG | - | chr1_3:45075239-45075258 | Msa0120370:intron | 35.0% | |
| CGCATTCTCATATTTCTTCA+TGG | - | chr1_3:45075419-45075438 | Msa0120370:intron | 35.0% | |
| CTAATTCCTTAACAACATCC+TGG | + | chr1_3:45075475-45075494 | None:intergenic | 35.0% | |
| CAGGATGTTGTTAAGGAATT+AGG | - | chr1_3:45075473-45075492 | Msa0120370:intron | 35.0% | |
| GGATGTTGTTAAGGAATTAG+GGG | - | chr1_3:45075475-45075494 | Msa0120370:intron | 35.0% | |
| ATTGTATCCTTTGATAGACC+TGG | - | chr1_3:45075503-45075522 | Msa0120370:intron | 35.0% | |
| ! | TTTAACGTACGATTTGGATC+GGG | + | chr1_3:45075545-45075564 | None:intergenic | 35.0% |
| ! | CTTTAACGTACGATTTGGAT+CGG | + | chr1_3:45075546-45075565 | None:intergenic | 35.0% |
| ATGCTCTTTAACGTACGATT+TGG | + | chr1_3:45075551-45075570 | None:intergenic | 35.0% | |
| !!! | CTATGTCATTGGTTTTTCCA+TGG | - | chr1_3:45075622-45075641 | Msa0120370:intron | 35.0% |
| TAAACACTTGTGAGACTGTT+AGG | - | chr1_3:45075739-45075758 | Msa0120370:intron | 35.0% | |
| AGACTGTTAGGAAGAGTTTA+TGG | - | chr1_3:45075751-45075770 | Msa0120370:intron | 35.0% | |
| TGATCTTCCTGCAAACTTAA+CGG | - | chr1_3:45076033-45076052 | Msa0120370:intron | 35.0% | |
| TTTCATTTGGGAATAGGCTT+CGG | + | chr1_3:45076059-45076078 | None:intergenic | 35.0% | |
| ! | AGAGCTTGTAACTAAGTTGA+TGG | - | chr1_3:45076210-45076229 | Msa0120370:intron | 35.0% |
| TCAAAAACGGAAGACATTGT+AGG | + | chr1_3:45076451-45076470 | None:intergenic | 35.0% | |
| CAATCGAACCTTCAAATTAG+TGG | - | chr1_3:45076667-45076686 | Msa0120370:intron | 35.0% | |
| ! | GAGGCTAATCTGAAATTTGA+AGG | + | chr1_3:45076757-45076776 | None:intergenic | 35.0% |
| CAATATTTAAATCACGGTGG+AGG | + | chr1_3:45076958-45076977 | None:intergenic | 35.0% | |
| CTCCACCGTGATTTAAATAT+TGG | - | chr1_3:45076956-45076975 | Msa0120370:intron | 35.0% | |
| AAGATGGGAATATACACCTT+TGG | - | chr1_3:45076985-45077004 | Msa0120370:intron | 35.0% | |
| !!! | AATGGATTTTGAAGCTCCAA+AGG | + | chr1_3:45077004-45077023 | None:intergenic | 35.0% |
| GAACCTTCATTGTTTGGAAA+TGG | + | chr1_3:45077022-45077041 | None:intergenic | 35.0% | |
| TGAACAGAACCTTCATTGTT+TGG | + | chr1_3:45077028-45077047 | None:intergenic | 35.0% | |
| ATGAAGGTTCTGTTCATCTT+TGG | - | chr1_3:45077032-45077051 | Msa0120370:intron | 35.0% | |
| !!! | GTCACTTTTAGGTGTGAAAT+AGG | - | chr1_3:45077195-45077214 | Msa0120370:intron | 35.0% |
| CATTTGATGGAGGATTGTTA+GGG | - | chr1_3:45077511-45077530 | Msa0120370:intron | 35.0% | |
| !!! | GTTATTTTCTTTCTAGGGTG+AGG | - | chr1_3:45077553-45077572 | Msa0120370:intron | 35.0% |
| !!! | TATTTTCTTTCTAGGGTGAG+GGG | - | chr1_3:45077555-45077574 | Msa0120370:intron | 35.0% |
| AGAGAAAATTCAATTGGGAG+GGG | - | chr1_3:45077608-45077627 | Msa0120370:CDS | 35.0% | |
| ACATGTTGGACATATAAGAC+AGG | + | chr1_3:45077638-45077657 | None:intergenic | 35.0% | |
| TTTCTTACAACAATGGCCAC+TGG | - | chr1_3:45072633-45072652 | Msa0120370:three_prime_UTR | 40.0% | |
| ! | TCTTCTTTTCAGCTTCCTTC+AGG | - | chr1_3:45072717-45072736 | Msa0120370:three_prime_UTR | 40.0% |
| TTTGGTGAAGATCGGATGTT+TGG | - | chr1_3:45073143-45073162 | Msa0120370:CDS | 40.0% | |
| ! | AGGTTTTGCAGTATTGTGGA+AGG | - | chr1_3:45073275-45073294 | Msa0120370:CDS | 40.0% |
| ATGTAATCAAGGAATCCCCT+AGG | - | chr1_3:45073465-45073484 | Msa0120370:intron | 40.0% | |
| !!! | ATTTTTAGAGTGGCGTGAGT+CGG | - | chr1_3:45073502-45073521 | Msa0120370:intron | 40.0% |
| ! | GTTCAGGGAATTTTCTTCAG+TGG | + | chr1_3:45073581-45073600 | None:intergenic | 40.0% |
| !! | CTTGAAAGGTTTACTGGTTC+AGG | + | chr1_3:45073597-45073616 | None:intergenic | 40.0% |
| !! | AAGGCTAGTGTGTCATTTCA+AGG | + | chr1_3:45073642-45073661 | None:intergenic | 40.0% |
| ! | TTGAAATGACACACTAGCCT+TGG | - | chr1_3:45073641-45073660 | Msa0120370:intron | 40.0% |
| !! | CACTAGCCTTGGATAGAAAT+TGG | - | chr1_3:45073652-45073671 | Msa0120370:intron | 40.0% |
| ACTCTCCCAATTTCTATCCA+AGG | + | chr1_3:45073661-45073680 | None:intergenic | 40.0% | |
| AAATTGGGAGAGTAGCTGAA+CGG | - | chr1_3:45073668-45073687 | Msa0120370:intron | 40.0% | |
| GGTTCCATAGAAGTTGAAAC+CGG | - | chr1_3:45073785-45073804 | Msa0120370:intron | 40.0% | |
| ! | CAAACCGGTTTCAACTTCTA+TGG | + | chr1_3:45073792-45073811 | None:intergenic | 40.0% |
| CCTCACTTTACTTTCTGTCT+TGG | + | chr1_3:45073828-45073847 | None:intergenic | 40.0% | |
| CCAAGACAGAAAGTAAAGTG+AGG | - | chr1_3:45073825-45073844 | Msa0120370:intron | 40.0% | |
| TGGCAAATGGAAATGCCTTT+AGG | - | chr1_3:45073860-45073879 | Msa0120370:intron | 40.0% | |
| TGTCAAGGATACTCTTGATC+CGG | - | chr1_3:45073948-45073967 | Msa0120370:intron | 40.0% | |
| TGCTAAGCTCAAATGTAAGG+TGG | - | chr1_3:45074090-45074109 | Msa0120370:CDS | 40.0% | |
| AGGGAAGAGTTCATGAAACT+TGG | - | chr1_3:45074179-45074198 | Msa0120370:CDS | 40.0% | |
| GGGAAGAGTTCATGAAACTT+GGG | - | chr1_3:45074180-45074199 | Msa0120370:CDS | 40.0% | |
| GGAAGAGTTCATGAAACTTG+GGG | - | chr1_3:45074181-45074200 | Msa0120370:CDS | 40.0% | |
| TCATTGTGAGTTAAAGGAGG+GGG | + | chr1_3:45074221-45074240 | None:intergenic | 40.0% | |
| CCTTCATTGTGAGTTAAAGG+AGG | + | chr1_3:45074224-45074243 | None:intergenic | 40.0% | |
| CCTCCTTTAACTCACAATGA+AGG | - | chr1_3:45074221-45074240 | Msa0120370:CDS | 40.0% | |
| GCACATTCAACAATGAAACG+TGG | + | chr1_3:45074257-45074276 | None:intergenic | 40.0% | |
| ! | CCTTTGCTATCATTAAAGGG+CGG | + | chr1_3:45074279-45074298 | None:intergenic | 40.0% |
| ! | CGTTTGTCAGGTTGCTAAAA+TGG | + | chr1_3:45074323-45074342 | None:intergenic | 40.0% |
| ! | ATTGATTTCCACCGTTTGTC+AGG | + | chr1_3:45074335-45074354 | None:intergenic | 40.0% |
| ACGGTGGAAATCAATCTCTT+CGG | - | chr1_3:45074340-45074359 | Msa0120370:intron | 40.0% | |
| AATGGGTGTAGAGAGTCAAA+AGG | + | chr1_3:45074376-45074395 | None:intergenic | 40.0% | |
| TGACTCTCTACACCCATTTA+CGG | - | chr1_3:45074378-45074397 | Msa0120370:intron | 40.0% | |
| TCGAAGTAGTTAGAGGATTC+AGG | - | chr1_3:45074512-45074531 | Msa0120370:intron | 40.0% | |
| CGAAGTAGTTAGAGGATTCA+GGG | - | chr1_3:45074513-45074532 | Msa0120370:intron | 40.0% | |
| ! | GGTAAAAGGCATAATCCTTG+TGG | - | chr1_3:45074546-45074565 | Msa0120370:intron | 40.0% |
| CAATATTTCCTCTAGCCACA+AGG | + | chr1_3:45074564-45074583 | None:intergenic | 40.0% | |
| GGAATTAGTGCAATTAGAGG+TGG | - | chr1_3:45074607-45074626 | Msa0120370:intron | 40.0% | |
| ATTAGTGCAATTAGAGGTGG+AGG | - | chr1_3:45074610-45074629 | Msa0120370:intron | 40.0% | |
| CAAATGTAATCCTGAAGGTG+TGG | - | chr1_3:45074641-45074660 | Msa0120370:intron | 40.0% | |
| CTTTATCCTATCCATCTTCC+TGG | + | chr1_3:45074719-45074738 | None:intergenic | 40.0% | |
| ! | GATAGGATAAAGTAGTGGAG+TGG | - | chr1_3:45074727-45074746 | Msa0120370:CDS | 40.0% |
| TGGGAAAATCTTCTCATGGA+AGG | - | chr1_3:45074810-45074829 | Msa0120370:intron | 40.0% | |
| ! | TGTTTATTGGGGTTCTAGCA+TGG | - | chr1_3:45075143-45075162 | Msa0120370:CDS | 40.0% |
| ! | GTTTATTGGGGTTCTAGCAT+GGG | - | chr1_3:45075144-45075163 | Msa0120370:CDS | 40.0% |
| !! | ATTCTTGGTGCTGTTATAGG+TGG | + | chr1_3:45075223-45075242 | None:intergenic | 40.0% |
| !! | ACTAAGAGATGGAAGGCATT+TGG | - | chr1_3:45075246-45075265 | Msa0120370:intron | 40.0% |
| CATTTGGCATACAAAGAGCA+TGG | - | chr1_3:45075262-45075281 | Msa0120370:intron | 40.0% | |
| TATTTAATGTGAGCTTGCCC+AGG | - | chr1_3:45075454-45075473 | Msa0120370:intron | 40.0% | |
| TCCTTTGATAGACCTGGTTA+CGG | - | chr1_3:45075509-45075528 | Msa0120370:intron | 40.0% | |
| GGCAAGCTCTTCTATATCTA+AGG | + | chr1_3:45075576-45075595 | None:intergenic | 40.0% | |
| GGGTCCAAATTCTATGTCAT+TGG | - | chr1_3:45075611-45075630 | Msa0120370:intron | 40.0% | |
| AACTCTAAATCGTACCTGTG+AGG | + | chr1_3:45075683-45075702 | None:intergenic | 40.0% | |
| AAGCTATCTTGGAGAGCTTA+TGG | + | chr1_3:45075818-45075837 | None:intergenic | 40.0% | |
| !!! | CTTTTTCAATACTGACAGGC+TGG | - | chr1_3:45075967-45075986 | Msa0120370:intron | 40.0% |
| GTTAAGTTTGCAGGAAGATC+AGG | + | chr1_3:45076034-45076053 | None:intergenic | 40.0% | |
| ! | TCTTGTTTCGAAAGGATGTC+TGG | + | chr1_3:45076187-45076206 | None:intergenic | 40.0% |
| !! | GCTCTTTGTCTTGTTTCGAA+AGG | + | chr1_3:45076195-45076214 | None:intergenic | 40.0% |
| TCATGAACAACTCACTGCTT+AGG | - | chr1_3:45076477-45076496 | Msa0120370:intron | 40.0% | |
| GTGGACAACCACTAATTTGA+AGG | + | chr1_3:45076678-45076697 | None:intergenic | 40.0% | |
| GAGAATCTGATGATCTGAAG+TGG | - | chr1_3:45076718-45076737 | Msa0120370:intron | 40.0% | |
| CAGAAGCAGATAAGACAACA+AGG | - | chr1_3:45076920-45076939 | Msa0120370:intron | 40.0% | |
| ATGTATCGTTGTAGTGTGAC+AGG | + | chr1_3:45077082-45077101 | None:intergenic | 40.0% | |
| ! | AGTTCATGGTAGTGAATCCA+CGG | + | chr1_3:45077118-45077137 | None:intergenic | 40.0% |
| ATTCACTACCATGAACTTCC+AGG | - | chr1_3:45077121-45077140 | Msa0120370:intron | 40.0% | |
| CAGAGAGTTCAAACTGAAGA+TGG | - | chr1_3:45077275-45077294 | Msa0120370:intron | 40.0% | |
| AAAGTGCATGTTCATGTAGG+TGG | + | chr1_3:45077450-45077469 | None:intergenic | 40.0% | |
| CACAAAGTGCATGTTCATGT+AGG | + | chr1_3:45077453-45077472 | None:intergenic | 40.0% | |
| GCATTTGATGGAGGATTGTT+AGG | - | chr1_3:45077510-45077529 | Msa0120370:intron | 40.0% | |
| ATCTCTATCGAGGAACATGT+TGG | + | chr1_3:45077652-45077671 | None:intergenic | 40.0% | |
| ACTGTGACTAATCTCTATCG+AGG | + | chr1_3:45077662-45077681 | None:intergenic | 40.0% | |
| !! | AGAAGATTTGTTGGCCCTTC+TGG | + | chr1_3:45072700-45072719 | None:intergenic | 45.0% |
| ! | TCTTTTCAGCTTCCTTCAGG+TGG | - | chr1_3:45072720-45072739 | Msa0120370:three_prime_UTR | 45.0% |
| ! | CTTTTCAGCTTCCTTCAGGT+GGG | - | chr1_3:45072721-45072740 | Msa0120370:three_prime_UTR | 45.0% |
| ATGAGATGGAAGAAATGCCC+AGG | - | chr1_3:45073111-45073130 | Msa0120370:CDS | 45.0% | |
| !! | AGGAGTGCTTTGGTGAAGAT+CGG | - | chr1_3:45073135-45073154 | Msa0120370:CDS | 45.0% |
| CAGCAGCTTCATGAATCCAA+TGG | - | chr1_3:45073183-45073202 | Msa0120370:CDS | 45.0% | |
| AGATTGATTGTCATGCGGTG+CGG | + | chr1_3:45073227-45073246 | None:intergenic | 45.0% | |
| AGCTCGCATCACTACTTGAA+AGG | + | chr1_3:45073611-45073630 | None:intergenic | 45.0% | |
| AATTGGGAGAGTAGCTGAAC+GGG | - | chr1_3:45073669-45073688 | Msa0120370:intron | 45.0% | |
| CGGGAAATGTGTGTGATATC+AGG | - | chr1_3:45073688-45073707 | Msa0120370:intron | 45.0% | |
| GTGTGTGATATCAGGCCTAA+TGG | - | chr1_3:45073696-45073715 | Msa0120370:intron | 45.0% | |
| TTCATCTGCACCACGATGAT+GGG | + | chr1_3:45073760-45073779 | None:intergenic | 45.0% | |
| TTTCATCTGCACCACGATGA+TGG | + | chr1_3:45073761-45073780 | None:intergenic | 45.0% | |
| TCGTGGTGCAGATGAAAACT+AGG | - | chr1_3:45073764-45073783 | Msa0120370:intron | 45.0% | |
| AAGTGAGGCAGTGTTGTAGT+TGG | - | chr1_3:45073840-45073859 | Msa0120370:intron | 45.0% | |
| GCAGTGTTGTAGTTGGCAAA+TGG | - | chr1_3:45073847-45073866 | Msa0120370:intron | 45.0% | |
| GTCAAGGATACTCTTGATCC+GGG | - | chr1_3:45073949-45073968 | Msa0120370:intron | 45.0% | |
| ATCCTCAACCTGGACAATGT+CGG | - | chr1_3:45073988-45074007 | Msa0120370:intron | 45.0% | |
| CAACTTGCAAACCCTGTGAA+GGG | - | chr1_3:45074160-45074179 | Msa0120370:CDS | 45.0% | |
| CATGAACTCTTCCCTTCACA+GGG | + | chr1_3:45074174-45074193 | None:intergenic | 45.0% | |
| TCATGAACTCTTCCCTTCAC+AGG | + | chr1_3:45074175-45074194 | None:intergenic | 45.0% | |
| CCGCCCTTTAATGATAGCAA+AGG | - | chr1_3:45074276-45074295 | Msa0120370:intron | 45.0% | |
| TTTAGCAACCTGACAAACGG+TGG | - | chr1_3:45074324-45074343 | Msa0120370:intron | 45.0% | |
| CACTTCTATCGGCCGTAAAT+GGG | + | chr1_3:45074393-45074412 | None:intergenic | 45.0% | |
| TCACTTCTATCGGCCGTAAA+TGG | + | chr1_3:45074394-45074413 | None:intergenic | 45.0% | |
| CTTGTTGGCGTCACTTCTAT+CGG | + | chr1_3:45074404-45074423 | None:intergenic | 45.0% | |
| TTCTTAGCCTCAACCCAACA+TGG | - | chr1_3:45074476-45074495 | Msa0120370:intron | 45.0% | |
| TCTTAGCCTCAACCCAACAT+GGG | - | chr1_3:45074477-45074496 | Msa0120370:intron | 45.0% | |
| ! | AGGGATAGCATCGAGGTAAA+AGG | - | chr1_3:45074532-45074551 | Msa0120370:intron | 45.0% |
| ! | ATGTAATCCTGAAGGTGTGG+TGG | - | chr1_3:45074644-45074663 | Msa0120370:intron | 45.0% |
| !! | AAGGTGTGGTGGTGGTTTAT+GGG | - | chr1_3:45074655-45074674 | Msa0120370:intron | 45.0% |
| GTATTCGGAAATCAAAGGCC+AGG | - | chr1_3:45074698-45074717 | Msa0120370:CDS | 45.0% | |
| GAAATCAAAGGCCAGGAAGA+TGG | - | chr1_3:45074705-45074724 | Msa0120370:CDS | 45.0% | |
| AGTCATGAATCAGTCCCTGT+TGG | - | chr1_3:45074942-45074961 | Msa0120370:CDS | 45.0% | |
| TCAGGAGAGCCACATACTTT+GGG | + | chr1_3:45075196-45075215 | None:intergenic | 45.0% | |
| ATCAGGAGAGCCACATACTT+TGG | + | chr1_3:45075197-45075216 | None:intergenic | 45.0% | |
| AAAGTATGTGGCTCTCCTGA+TGG | - | chr1_3:45075196-45075215 | Msa0120370:intron | 45.0% | |
| TCCATGGTATCAACACTTGC+AGG | - | chr1_3:45075323-45075342 | Msa0120370:intron | 45.0% | |
| AATTACGGGTGATAGGGTGT+TGG | + | chr1_3:45075365-45075384 | None:intergenic | 45.0% | |
| TCCGTAACCAGGTCTATCAA+AGG | + | chr1_3:45075513-45075532 | None:intergenic | 45.0% | |
| AGAAGAGCTTGCCGATCAAT+TGG | - | chr1_3:45075583-45075602 | Msa0120370:intron | 45.0% | |
| GAAGAGCTTGCCGATCAATT+GGG | - | chr1_3:45075584-45075603 | Msa0120370:intron | 45.0% | |
| CTTGCCGATCAATTGGGATT+GGG | - | chr1_3:45075590-45075609 | Msa0120370:intron | 45.0% | |
| TTGCCGATCAATTGGGATTG+GGG | - | chr1_3:45075591-45075610 | Msa0120370:intron | 45.0% | |
| !!! | GTCATTGGTTTTTCCATGGG+TGG | - | chr1_3:45075626-45075645 | Msa0120370:intron | 45.0% |
| CCAAACAATTTGTCCACCCA+TGG | + | chr1_3:45075642-45075661 | None:intergenic | 45.0% | |
| CCATGGGTGGACAAATTGTT+TGG | - | chr1_3:45075639-45075658 | Msa0120370:intron | 45.0% | |
| ACCTGTGAGGTATGTGCTTA+AGG | + | chr1_3:45075670-45075689 | None:intergenic | 45.0% | |
| TTCCACCAGTATGTTAGCCA+TGG | + | chr1_3:45076121-45076140 | None:intergenic | 45.0% | |
| ACTGGTGGAACACTCAAAGA+TGG | - | chr1_3:45076131-45076150 | Msa0120370:intron | 45.0% | |
| GGTTCTGTTCATCTTTGGCA+TGG | - | chr1_3:45077037-45077056 | Msa0120370:intron | 45.0% | |
| TACCATGAACTTCCAGGATC+TGG | - | chr1_3:45077127-45077146 | Msa0120370:intron | 45.0% | |
| CACTCACACCATCAGCATTA+GGG | + | chr1_3:45077162-45077181 | None:intergenic | 45.0% | |
| TCACTCACACCATCAGCATT+AGG | + | chr1_3:45077163-45077182 | None:intergenic | 45.0% | |
| ! | TAATGCTGATGGTGTGAGTG+AGG | - | chr1_3:45077162-45077181 | Msa0120370:intron | 45.0% |
| !! | TAGGCTTTTGTATCGGTCAC+CGG | - | chr1_3:45077214-45077233 | Msa0120370:intron | 45.0% |
| ATAAATGCCGACGCTAACAC+CGG | + | chr1_3:45077244-45077263 | None:intergenic | 45.0% | |
| ! | GCGTCGGCATTTATCATCTT+TGG | - | chr1_3:45077250-45077269 | Msa0120370:intron | 45.0% |
| !! | AATTATAATATAGAAAATTA+CGG | + | chr1_3:45075380-45075399 | None:intergenic | 5.0% |
| AGCTCGTTCTCACACCAGAA+GGG | - | chr1_3:45072683-45072702 | Msa0120370:three_prime_UTR | 50.0% | |
| AAGAGCTAAGACCCACCTGA+AGG | + | chr1_3:45072735-45072754 | None:intergenic | 50.0% | |
| GATGGAAGAAATGCCCAGGA+AGG | - | chr1_3:45073115-45073134 | Msa0120370:CDS | 50.0% | |
| ! | TCACCAAAGCACTCCTTCCT+GGG | + | chr1_3:45073131-45073150 | None:intergenic | 50.0% |
| ! | TTCACCAAAGCACTCCTTCC+TGG | + | chr1_3:45073132-45073151 | None:intergenic | 50.0% |
| CAGCCACTGCAATTCACAAG+TGG | - | chr1_3:45073374-45073393 | Msa0120370:intron | 50.0% | |
| CAGCCACTTGTGAATTGCAG+TGG | + | chr1_3:45073380-45073399 | None:intergenic | 50.0% | |
| TTGAAAAGGGCCCATCATCG+TGG | - | chr1_3:45073747-45073766 | Msa0120370:intron | 50.0% | |
| !! | TTGAAACCGGTTTGCTGCCA+AGG | - | chr1_3:45073798-45073817 | Msa0120370:intron | 50.0% |
| GACGTTGCTCACTCACCTAA+AGG | + | chr1_3:45073878-45073897 | None:intergenic | 50.0% | |
| TAGGTGAGTGAGCAACGTCA+AGG | - | chr1_3:45073879-45073898 | Msa0120370:intron | 50.0% | |
| ATCATCTTTCCGAGCTCTCC+CGG | + | chr1_3:45073970-45073989 | None:intergenic | 50.0% | |
| CGGAAAGATGATCCTCAACC+TGG | - | chr1_3:45073978-45073997 | Msa0120370:intron | 50.0% | |
| CAATGTCGGCCGCATAAATG+AGG | - | chr1_3:45074002-45074021 | Msa0120370:intron | 50.0% | |
| GCAACTTGCAAACCCTGTGA+AGG | - | chr1_3:45074159-45074178 | Msa0120370:CDS | 50.0% | |
| AGTTCATGAAACTTGGGGCG+TGG | - | chr1_3:45074186-45074205 | Msa0120370:CDS | 50.0% | |
| CCTCTAACTACTTCGAAGCC+AGG | + | chr1_3:45074508-45074527 | None:intergenic | 50.0% | |
| CCTGGCTTCGAAGTAGTTAG+AGG | - | chr1_3:45074505-45074524 | Msa0120370:intron | 50.0% | |
| AGGATTCAGGGATAGCATCG+AGG | - | chr1_3:45074525-45074544 | Msa0120370:intron | 50.0% | |
| GGCATAATCCTTGTGGCTAG+AGG | - | chr1_3:45074553-45074572 | Msa0120370:intron | 50.0% | |
| AGTGCAATTAGAGGTGGAGG+AGG | - | chr1_3:45074613-45074632 | Msa0120370:intron | 50.0% | |
| ! | TAATCCTGAAGGTGTGGTGG+TGG | - | chr1_3:45074647-45074666 | Msa0120370:intron | 50.0% |
| TAAACCACCACCACACCTTC+AGG | + | chr1_3:45074654-45074673 | None:intergenic | 50.0% | |
| !! | GAAGGTGTGGTGGTGGTTTA+TGG | - | chr1_3:45074654-45074673 | Msa0120370:intron | 50.0% |
| CAAAGGCCAGGAAGATGGAT+AGG | - | chr1_3:45074710-45074729 | Msa0120370:CDS | 50.0% | |
| CTGGGAAGAGGTTCCAACAT+TGG | - | chr1_3:45074758-45074777 | Msa0120370:CDS | 50.0% | |
| !! | AGAGGTTCCAACATTGGCTC+TGG | - | chr1_3:45074764-45074783 | Msa0120370:CDS | 50.0% |
| !! | GAGGTTCCAACATTGGCTCT+GGG | - | chr1_3:45074765-45074784 | Msa0120370:CDS | 50.0% |
| TCATCACCCAGAGCCAATGT+TGG | + | chr1_3:45074774-45074793 | None:intergenic | 50.0% | |
| !! | AACATTGGCTCTGGGTGATG+AGG | - | chr1_3:45074773-45074792 | Msa0120370:CDS | 50.0% |
| GCTGTTATAGGTGGTCCATC+AGG | + | chr1_3:45075214-45075233 | None:intergenic | 50.0% | |
| !! | GCCTGCAAGTGTTGATACCA+TGG | + | chr1_3:45075327-45075346 | None:intergenic | 50.0% |
| GCTTGCCCAGGATGTTGTTA+AGG | - | chr1_3:45075466-45075485 | Msa0120370:intron | 50.0% | |
| GGATCACTTTCTCCGTAACC+AGG | + | chr1_3:45075524-45075543 | None:intergenic | 50.0% | |
| GCTTGCCGATCAATTGGGAT+TGG | - | chr1_3:45075589-45075608 | Msa0120370:intron | 50.0% | |
| GGACCCCAATCCCAATTGAT+CGG | + | chr1_3:45075597-45075616 | None:intergenic | 50.0% | |
| GCCTTAAGCACATACCTCAC+AGG | - | chr1_3:45075666-45075685 | Msa0120370:intron | 50.0% | |
| TTCAATACTGACAGGCTGGC+AGG | - | chr1_3:45075971-45075990 | Msa0120370:intron | 50.0% | |
| TAGCTCCAGTCGTCAACTAC+TGG | - | chr1_3:45076005-45076024 | Msa0120370:intron | 50.0% | |
| ACACGCCATGGCTAACATAC+TGG | - | chr1_3:45076113-45076132 | Msa0120370:intron | 50.0% | |
| CTCACTGCTTAGGACCTGTT+TGG | - | chr1_3:45076487-45076506 | Msa0120370:intron | 50.0% | |
| ! | CATGGTAGTGAATCCACGGA+AGG | + | chr1_3:45077114-45077133 | None:intergenic | 50.0% |
| CATCAGCATTAGGGAAGAGG+TGG | + | chr1_3:45077153-45077172 | None:intergenic | 50.0% | |
| CACCTCTTCCCTAATGCTGA+TGG | - | chr1_3:45077151-45077170 | Msa0120370:intron | 50.0% | |
| CACCATCAGCATTAGGGAAG+AGG | + | chr1_3:45077156-45077175 | None:intergenic | 50.0% | |
| ! | CTTTGAGCAATGTGGGCTGT+AGG | - | chr1_3:45077318-45077337 | Msa0120370:intron | 50.0% |
| !! | TTTCTAGGGTGAGGGGTATG+CGG | - | chr1_3:45077562-45077581 | Msa0120370:CDS | 50.0% |
| !! | TCAATAGGCGCCTTGCTGTT+AGG | - | chr1_3:45077697-45077716 | Msa0120370:five_prime_UTR | 50.0% |
| CAGCTCGTTCTCACACCAGA+AGG | - | chr1_3:45072682-45072701 | Msa0120370:three_prime_UTR | 55.0% | |
| !! | ATGCCCAGGAAGGAGTGCTT+TGG | - | chr1_3:45073125-45073144 | Msa0120370:CDS | 55.0% |
| GTCGGAACAACCAGCCCAAT+TGG | - | chr1_3:45073520-45073539 | Msa0120370:intron | 55.0% | |
| CTTTCTGTCTTGGGCGTCCT+TGG | + | chr1_3:45073818-45073837 | None:intergenic | 55.0% | |
| ACTCTTGATCCGGGAGAGCT+CGG | - | chr1_3:45073958-45073977 | Msa0120370:intron | 55.0% | |
| TTATGCGGCCGACATTGTCC+AGG | + | chr1_3:45073999-45074018 | None:intergenic | 55.0% | |
| TGTCGGCCGCATAAATGAGG+AGG | - | chr1_3:45074005-45074024 | Msa0120370:intron | 55.0% | |
| ! | GAAGCACCCATGTTGGGTTG+AGG | + | chr1_3:45074486-45074505 | None:intergenic | 55.0% |
| AACCCAACATGGGTGCTTCC+TGG | - | chr1_3:45074487-45074506 | Msa0120370:intron | 55.0% | |
| !! | AGCCAGGAAGCACCCATGTT+GGG | + | chr1_3:45074492-45074511 | None:intergenic | 55.0% |
| !! | AAGCCAGGAAGCACCCATGT+TGG | + | chr1_3:45074493-45074512 | None:intergenic | 55.0% |
| TAGTGGAGTGGGAGAAGAGC+TGG | - | chr1_3:45074739-45074758 | Msa0120370:CDS | 55.0% | |
| AGTGGAGTGGGAGAAGAGCT+GGG | - | chr1_3:45074740-45074759 | Msa0120370:CDS | 55.0% | |
| !! | TTGGCTCTGGGTGATGAGGA+AGG | - | chr1_3:45074777-45074796 | Msa0120370:CDS | 55.0% |
| GCTCCTCCTCCCAAAGTATG+TGG | - | chr1_3:45075184-45075203 | Msa0120370:intron | 55.0% | |
| ! | GAGCCACATACTTTGGGAGG+AGG | + | chr1_3:45075190-45075209 | None:intergenic | 55.0% |
| GGAGAGCCACATACTTTGGG+AGG | + | chr1_3:45075193-45075212 | None:intergenic | 55.0% | |
| CACTTGCAGGCATGACGCTT+TGG | - | chr1_3:45075336-45075355 | Msa0120370:intron | 55.0% | |
| CTCCAGTCGTCAACTACTGG+TGG | - | chr1_3:45076008-45076027 | Msa0120370:intron | 55.0% | |
| GCTTCGGCCGTTAAGTTTGC+AGG | + | chr1_3:45076043-45076062 | None:intergenic | 55.0% | |
| CGCCATGGCTAACATACTGG+TGG | - | chr1_3:45076116-45076135 | Msa0120370:intron | 55.0% | |
| ACATCGCGCAAAACCTTCCG+TGG | - | chr1_3:45077098-45077117 | Msa0120370:intron | 55.0% | |
| GGCCAGATCCTGGAAGTTCA+TGG | + | chr1_3:45077132-45077151 | None:intergenic | 55.0% | |
| ! | TGTATCGGTCACCGGCTATC+CGG | - | chr1_3:45077222-45077241 | Msa0120370:intron | 55.0% |
| GGCCGACATTGTCCAGGTTG+AGG | + | chr1_3:45073993-45074012 | None:intergenic | 60.0% | |
| GTGGGAGAAGAGCTGGGAAG+AGG | - | chr1_3:45074746-45074765 | Msa0120370:CDS | 60.0% | |
| GGCCACCAGTAGTTGACGAC+TGG | + | chr1_3:45076013-45076032 | None:intergenic | 60.0% | |
| GTGTTGCGCACTACACGCCA+TGG | - | chr1_3:45076101-45076120 | Msa0120370:intron | 60.0% | |
| CGACGCTAACACCGGATAGC+CGG | + | chr1_3:45077236-45077255 | None:intergenic | 60.0% | |
| ! | CGGCTATCCGGTGTTAGCGT+CGG | - | chr1_3:45077234-45077253 | Msa0120370:intron | 60.0% |
| GGGCGTCCTTGGCAGCAAAC+CGG | + | chr1_3:45073807-45073826 | None:intergenic | 65.0% | |
| ! | GCGCAACACGAAGCGCCCAT+TGG | + | chr1_3:45076090-45076109 | None:intergenic | 65.0% |
| GGGAAGAGGTGGCCAGATCC+TGG | + | chr1_3:45077142-45077161 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 45072574 | 45077720 | 45072574 | ID=Msa0120370;Name=Msa0120370 |
| chr1_3 | mRNA | 45072574 | 45077720 | 45072574 | ID=Msa0120370-mRNA-1;Parent=Msa0120370;Name=Msa0120370-mRNA-1;_AED=0.28;_eAED=0.28;_QI=71|0.75|0.6|1|1|1|5|504|350 |
| chr1_3 | exon | 45072574 | 45073371 | 45072574 | ID=Msa0120370-mRNA-1:exon:13534;Parent=Msa0120370-mRNA-1 |
| chr1_3 | exon | 45074042 | 45074286 | 45074042 | ID=Msa0120370-mRNA-1:exon:13533;Parent=Msa0120370-mRNA-1 |
| chr1_3 | exon | 45074662 | 45074818 | 45074662 | ID=Msa0120370-mRNA-1:exon:13532;Parent=Msa0120370-mRNA-1 |
| chr1_3 | exon | 45074916 | 45075178 | 45074916 | ID=Msa0120370-mRNA-1:exon:13531;Parent=Msa0120370-mRNA-1 |
| chr1_3 | exon | 45077556 | 45077720 | 45077556 | ID=Msa0120370-mRNA-1:exon:13530;Parent=Msa0120370-mRNA-1 |
| chr1_3 | five_prime_UTR | 45077650 | 45077720 | 45077650 | ID=Msa0120370-mRNA-1:five_prime_utr;Parent=Msa0120370-mRNA-1 |
| chr1_3 | CDS | 45077556 | 45077649 | 45077556 | ID=Msa0120370-mRNA-1:cds;Parent=Msa0120370-mRNA-1 |
| chr1_3 | CDS | 45074916 | 45075178 | 45074916 | ID=Msa0120370-mRNA-1:cds;Parent=Msa0120370-mRNA-1 |
| chr1_3 | CDS | 45074662 | 45074818 | 45074662 | ID=Msa0120370-mRNA-1:cds;Parent=Msa0120370-mRNA-1 |
| chr1_3 | CDS | 45074042 | 45074286 | 45074042 | ID=Msa0120370-mRNA-1:cds;Parent=Msa0120370-mRNA-1 |
| chr1_3 | CDS | 45073078 | 45073371 | 45073078 | ID=Msa0120370-mRNA-1:cds;Parent=Msa0120370-mRNA-1 |
| chr1_3 | three_prime_UTR | 45072574 | 45073077 | 45072574 | ID=Msa0120370-mRNA-1:three_prime_utr;Parent=Msa0120370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
