Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462540 | XP_013459310.1 | 99.329 | 298 | 2 | 0 | 9 | 306 | 26 | 323 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462540 | sp|O24646|HY5_ARATH | 72.519 | 131 | 35 | 1 | 174 | 303 | 33 | 163 | 8.70e-55 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462540 | A0A072UVE3 | 99.329 | 298 | 2 | 0 | 9 | 306 | 26 | 323 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0462540 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0462540 | -0.867589 | 1.224002e-65 | -8.615850e-47 |
| Msa0000590 | Msa0462540 | 0.801904 | 7.226480e-49 | -8.615850e-47 |
| Msa0036370 | Msa0462540 | 0.825171 | 5.421937e-54 | -8.615850e-47 |
| Msa0038020 | Msa0462540 | 0.802133 | 6.483489e-49 | -8.615850e-47 |
| Msa0072170 | Msa0462540 | 0.805974 | 1.030076e-49 | -8.615850e-47 |
| Msa0085720 | Msa0462540 | 0.807755 | 4.329790e-50 | -8.615850e-47 |
| Msa0090030 | Msa0462540 | 0.838192 | 3.327084e-57 | -8.615850e-47 |
| Msa0099510 | Msa0462540 | 0.836082 | 1.152837e-56 | -8.615850e-47 |
| Msa0120370 | Msa0462540 | -0.822857 | 1.892445e-53 | -8.615850e-47 |
| Msa0120540 | Msa0462540 | 0.803202 | 3.901131e-49 | -8.615850e-47 |
| Msa0140170 | Msa0462540 | 0.810635 | 1.044866e-50 | -8.615850e-47 |
| Msa0140400 | Msa0462540 | 0.812295 | 4.554661e-51 | -8.615850e-47 |
| Msa0140520 | Msa0462540 | -0.802358 | 5.826490e-49 | -8.615850e-47 |
| Msa0148120 | Msa0462540 | 0.810298 | 1.235640e-50 | -8.615850e-47 |
| Msa0163560 | Msa0462540 | 0.832296 | 1.025086e-55 | -8.615850e-47 |
| Msa0163620 | Msa0462540 | -0.808114 | 3.631016e-50 | -8.615850e-47 |
| Msa0173330 | Msa0462540 | 0.834967 | 2.206730e-56 | -8.615850e-47 |
| Msa0194720 | Msa0462540 | 0.813211 | 2.871028e-51 | -8.615850e-47 |
| Msa0196020 | Msa0462540 | -0.801854 | 7.396317e-49 | -8.615850e-47 |
| Msa0198940 | Msa0462540 | 0.837833 | 4.115178e-57 | -8.615850e-47 |
| Msa0208810 | Msa0462540 | 0.846103 | 2.679934e-59 | -8.615850e-47 |
| Msa0212750 | Msa0462540 | -0.817936 | 2.545449e-52 | -8.615850e-47 |
| Msa0223100 | Msa0462540 | 0.829632 | 4.617745e-55 | -8.615850e-47 |
| Msa0223290 | Msa0462540 | 0.844244 | 8.524126e-59 | -8.615850e-47 |
| Msa0223380 | Msa0462540 | 0.829824 | 4.145622e-55 | -8.615850e-47 |
| Msa0227310 | Msa0462540 | -0.812061 | 5.122964e-51 | -8.615850e-47 |
| Msa0370310 | Msa0462540 | 0.813158 | 2.949368e-51 | -8.615850e-47 |
| Msa0370870 | Msa0462540 | 0.859361 | 4.361345e-63 | -8.615850e-47 |
| Msa0377530 | Msa0462540 | 0.855811 | 4.910653e-62 | -8.615850e-47 |
| Msa0381220 | Msa0462540 | 0.806518 | 7.911580e-50 | -8.615850e-47 |
| Msa0387910 | Msa0462540 | 0.818454 | 1.943749e-52 | -8.615850e-47 |
| Msa0388030 | Msa0462540 | -0.833644 | 4.736417e-56 | -8.615850e-47 |
| Msa0388710 | Msa0462540 | 0.802597 | 5.201362e-49 | -8.615850e-47 |
| Msa0404700 | Msa0462540 | 0.954054 | 7.003653e-112 | -8.615850e-47 |
| Msa0416320 | Msa0462540 | 0.861797 | 7.968944e-64 | -8.615850e-47 |
| Msa0421260 | Msa0462540 | 0.804899 | 1.731267e-49 | -8.615850e-47 |
| Msa0426810 | Msa0462540 | 0.876935 | 9.401436e-69 | -8.615850e-47 |
| Msa0436190 | Msa0462540 | 0.812582 | 3.942134e-51 | -8.615850e-47 |
| Msa0461590 | Msa0462540 | 0.800085 | 1.700614e-48 | -8.615850e-47 |
| Msa0462540 | Msa0464900 | 0.853665 | 2.056722e-61 | -8.615850e-47 |
| Msa0462540 | Msa0465920 | 0.836237 | 1.052566e-56 | -8.615850e-47 |
| Msa0462540 | Msa0465960 | 0.800309 | 1.531201e-48 | -8.615850e-47 |
| Msa0462540 | Msa0491520 | 0.802154 | 6.418094e-49 | -8.615850e-47 |
| Msa0462540 | Msa0493920 | 0.812437 | 4.240748e-51 | -8.615850e-47 |
| Msa0462540 | Msa0505060 | 0.851507 | 8.487352e-61 | -8.615850e-47 |
| Msa0462540 | Msa0517490 | 0.848829 | 4.776715e-60 | -8.615850e-47 |
| Msa0462540 | Msa0519390 | 0.804065 | 2.583432e-49 | -8.615850e-47 |
| Msa0462540 | Msa0524600 | 0.815457 | 9.156973e-52 | -8.615850e-47 |
| Msa0462540 | Msa0537770 | 0.802008 | 6.879113e-49 | -8.615850e-47 |
| Msa0462540 | Msa0547400 | 0.807614 | 4.639091e-50 | -8.615850e-47 |
| Msa0462540 | Msa0557950 | -0.806139 | 9.509431e-50 | -8.615850e-47 |
| Msa0462540 | Msa0565620 | -0.819672 | 1.027048e-52 | -8.615850e-47 |
| Msa0462540 | Msa0578090 | 0.807601 | 4.667482e-50 | -8.615850e-47 |
| Msa0462540 | Msa0579370 | 0.814079 | 1.849407e-51 | -8.615850e-47 |
| Msa0462540 | Msa0590650 | 0.800654 | 1.302028e-48 | -8.615850e-47 |
| Msa0462540 | Msa0602120 | 0.802563 | 5.288089e-49 | -8.615850e-47 |
| Msa0462540 | Msa0609970 | 0.845928 | 2.990417e-59 | -8.615850e-47 |
| Msa0462540 | Msa0614990 | 0.830716 | 2.511501e-55 | -8.615850e-47 |
| Msa0462540 | Msa0618200 | -0.809339 | 1.986632e-50 | -8.615850e-47 |
| Msa0462540 | Msa0622340 | 0.803970 | 2.702952e-49 | -8.615850e-47 |
| Msa0462540 | Msa0628290 | 0.807788 | 4.259646e-50 | -8.615850e-47 |
| Msa0462540 | Msa0643250 | 0.814785 | 1.290807e-51 | -8.615850e-47 |
| Msa0462540 | Msa0650620 | 0.833948 | 3.977069e-56 | -8.615850e-47 |
| Msa0462540 | Msa0650730 | 0.806197 | 9.247944e-50 | -8.615850e-47 |
| Msa0462540 | Msa0651150 | 0.809851 | 1.542657e-50 | -8.615850e-47 |
| Msa0462540 | Msa0653320 | -0.823134 | 1.630898e-53 | -8.615850e-47 |
| Msa0462540 | Msa0657460 | -0.800665 | 1.295246e-48 | -8.615850e-47 |
| Msa0462540 | Msa0664760 | 0.801656 | 8.123554e-49 | -8.615850e-47 |
| Msa0462540 | Msa0669190 | 0.809509 | 1.826830e-50 | -8.615850e-47 |
| Msa0462540 | Msa0679550 | 0.813645 | 2.304375e-51 | -8.615850e-47 |
| Msa0462540 | Msa0693790 | 0.813380 | 2.636167e-51 | -8.615850e-47 |
| Msa0462540 | Msa0696420 | 0.811604 | 6.443272e-51 | -8.615850e-47 |
| Msa0462540 | Msa0715110 | 0.815929 | 7.187441e-52 | -8.615850e-47 |
| Msa0462540 | Msa0715150 | 0.805201 | 1.496490e-49 | -8.615850e-47 |
| Msa0462540 | Msa0737800 | 0.826233 | 3.036321e-54 | -8.615850e-47 |
| Msa0462540 | Msa0755080 | 0.800845 | 1.190197e-48 | -8.615850e-47 |
| Msa0462540 | Msa0784620 | 0.806143 | 9.493761e-50 | -8.615850e-47 |
| Msa0462540 | Msa0785430 | 0.809096 | 2.239853e-50 | -8.615850e-47 |
| Msa0462540 | Msa0791820 | 0.800282 | 1.550574e-48 | -8.615850e-47 |
| Msa0462540 | Msa0799060 | 0.808246 | 3.404056e-50 | -8.615850e-47 |
| Msa0462540 | Msa0812060 | 0.805634 | 1.214267e-49 | -8.615850e-47 |
| Msa0462540 | Msa0817260 | 0.832511 | 9.067683e-56 | -8.615850e-47 |
| Msa0462540 | Msa0817270 | 0.825076 | 5.707879e-54 | -8.615850e-47 |
| Msa0462540 | Msa0820530 | -0.837809 | 4.173838e-57 | -8.615850e-47 |
| Msa0462540 | Msa0824730 | 0.823224 | 1.554375e-53 | -8.615850e-47 |
| Msa0462540 | Msa0834450 | 0.809183 | 2.146326e-50 | -8.615850e-47 |
| Msa0462540 | Msa0876860 | -0.822366 | 2.461835e-53 | -8.615850e-47 |
| Msa0462540 | Msa0895310 | 0.803707 | 3.065600e-49 | -8.615850e-47 |
| Msa0462540 | Msa0908170 | 0.825458 | 4.637683e-54 | -8.615850e-47 |
| Msa0462540 | Msa0944730 | 0.847134 | 1.400891e-59 | -8.615850e-47 |
| Msa0462540 | Msa0956520 | -0.808491 | 3.018178e-50 | -8.615850e-47 |
| Msa0462540 | Msa0959010 | 0.822246 | 2.624413e-53 | -8.615850e-47 |
| Msa0462540 | Msa0982590 | 0.829318 | 5.504290e-55 | -8.615850e-47 |
| Msa0462540 | Msa1037020 | 0.818298 | 2.108707e-52 | -8.615850e-47 |
| Msa0462540 | Msa1048700 | 0.808112 | 3.634413e-50 | -8.615850e-47 |
| Msa0462540 | Msa1063700 | 0.803536 | 3.326232e-49 | -8.615850e-47 |
| Msa0462540 | Msa1072530 | -0.801115 | 1.048387e-48 | -8.615850e-47 |
| Msa0462540 | Msa1077670 | 0.812373 | 4.379478e-51 | -8.615850e-47 |
| Msa0462540 | Msa1129400 | 0.809812 | 1.572782e-50 | -8.615850e-47 |
| Msa0462540 | Msa1130210 | -0.828303 | 9.689929e-55 | -8.615850e-47 |
| Msa0462540 | Msa1162980 | 0.807374 | 5.214069e-50 | -8.615850e-47 |
| Msa0462540 | Msa1164530 | 0.828215 | 1.017598e-54 | -8.615850e-47 |
| Msa0462540 | Msa1172130 | -0.803802 | 2.930246e-49 | -8.615850e-47 |
| Msa0462540 | Msa1174310 | 0.819707 | 1.008179e-52 | -8.615850e-47 |
| Msa0462540 | Msa1178050 | 0.800889 | 1.165929e-48 | -8.615850e-47 |
| Msa0462540 | Msa1179020 | -0.804023 | 2.635347e-49 | -8.615850e-47 |
| Msa0462540 | Msa1182630 | 0.839149 | 1.882816e-57 | -8.615850e-47 |
| Msa0462540 | Msa1182640 | 0.879100 | 1.641870e-69 | -8.615850e-47 |
| Msa0462540 | Msa1207460 | -0.811295 | 7.518454e-51 | -8.615850e-47 |
| Msa0462540 | Msa1211050 | -0.801201 | 1.006940e-48 | -8.615850e-47 |
| Msa0462540 | Msa1218650 | 0.808337 | 3.254798e-50 | -8.615850e-47 |
| Msa0462540 | Msa1229850 | 0.826935 | 2.064087e-54 | -8.615850e-47 |
| Msa0462540 | Msa1236070 | -0.805203 | 1.494886e-49 | -8.615850e-47 |
| Msa0462540 | Msa1249920 | 0.820482 | 6.702786e-53 | -8.615850e-47 |
| Msa0462540 | Msa1272520 | 0.856258 | 3.634000e-62 | -8.615850e-47 |
| Msa0462540 | Msa1280620 | 0.816683 | 4.873356e-52 | -8.615850e-47 |
| Msa0462540 | Msa1291350 | 0.808417 | 3.129917e-50 | -8.615850e-47 |
| Msa0462540 | Msa1296300 | 0.813361 | 2.661686e-51 | -8.615850e-47 |
| Msa0462540 | Msa1300860 | 0.805507 | 1.291229e-49 | -8.615850e-47 |
| Msa0462540 | Msa1310660 | 0.870482 | 1.411172e-66 | -8.615850e-47 |
| Msa0462540 | Msa1314770 | 0.815487 | 9.016242e-52 | -8.615850e-47 |
| Msa0462540 | Msa1330890 | -0.804722 | 1.884501e-49 | -8.615850e-47 |
| Msa0462540 | Msa1340830 | 0.810679 | 1.022189e-50 | -8.615850e-47 |
| Msa0462540 | Msa1350690 | 0.856406 | 3.286385e-62 | -8.615850e-47 |
| Msa0462540 | Msa1360280 | 0.843830 | 1.100489e-58 | -8.615850e-47 |
| Msa0462540 | Msa1363700 | 0.842743 | 2.146361e-58 | -8.615850e-47 |
| Msa0462540 | Msa1371090 | 0.806824 | 6.817689e-50 | -8.615850e-47 |
| Msa0462540 | Msa1383480 | 0.862014 | 6.840141e-64 | -8.615850e-47 |
| Msa0462540 | Msa1393800 | 0.805594 | 1.238147e-49 | -8.615850e-47 |
| Msa0462540 | Msa1398860 | 0.807025 | 6.184270e-50 | -8.615850e-47 |
| Msa0462540 | Msa1404720 | 0.801652 | 8.140175e-49 | -8.615850e-47 |
| Msa0462540 | Msa1412930 | -0.803662 | 3.132746e-49 | -8.615850e-47 |
| Msa0462540 | Msa1415920 | 0.844611 | 6.793556e-59 | -8.615850e-47 |
| Msa0462540 | Msa1422840 | 0.828012 | 1.138859e-54 | -8.615850e-47 |
| Msa0462540 | Msa1425340 | 0.803672 | 3.117700e-49 | -8.615850e-47 |
| Msa0462540 | Msa1439230 | 0.802683 | 4.993678e-49 | -8.615850e-47 |
| Msa0462540 | Msa1442220 | -0.840439 | 8.688930e-58 | -8.615850e-47 |
| Msa0462540 | Msa1452470 | 0.806416 | 8.313418e-50 | -8.615850e-47 |
| Msa0239940 | Msa0462540 | 0.847439 | 1.155480e-59 | -8.615850e-47 |
| Msa0241740 | Msa0462540 | 0.831590 | 1.531193e-55 | -8.615850e-47 |
| Msa0250670 | Msa0462540 | 0.806599 | 7.607704e-50 | -8.615850e-47 |
| Msa0252240 | Msa0462540 | 0.807861 | 4.109516e-50 | -8.615850e-47 |
| Msa0266210 | Msa0462540 | 0.855655 | 5.452805e-62 | -8.615850e-47 |
| Msa0275400 | Msa0462540 | -0.839925 | 1.183354e-57 | -8.615850e-47 |
| Msa0287670 | Msa0462540 | 0.857195 | 1.925649e-62 | -8.615850e-47 |
| Msa0288730 | Msa0462540 | 0.830006 | 3.744477e-55 | -8.615850e-47 |
| Msa0289400 | Msa0462540 | 0.842017 | 3.341915e-58 | -8.615850e-47 |
| Msa0302650 | Msa0462540 | 0.854893 | 9.089422e-62 | -8.615850e-47 |
| Msa0308200 | Msa0462540 | 0.832914 | 7.202045e-56 | -8.615850e-47 |
| Msa0308220 | Msa0462540 | 0.845376 | 4.220469e-59 | -8.615850e-47 |
| Msa0312310 | Msa0462540 | 0.824486 | 7.865877e-54 | -8.615850e-47 |
| Msa0314120 | Msa0462540 | 0.809430 | 1.899282e-50 | -8.615850e-47 |
| Msa0320610 | Msa0462540 | 0.818336 | 2.067572e-52 | -8.615850e-47 |
| Msa0327410 | Msa0462540 | 0.801424 | 9.064927e-49 | -8.615850e-47 |
| Msa0362060 | Msa0462540 | 0.862439 | 5.062652e-64 | -8.615850e-47 |
| Msa0363100 | Msa0462540 | 0.921604 | 2.891834e-88 | -8.615850e-47 |
| Msa0363170 | Msa0462540 | 0.950164 | 2.894972e-108 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462540 | MtrunA17_Chr3g0094861 | 99.329 | 298 | 2 | 0 | 9 | 306 | 26 | 323 | 0.0 | 613 |
| Msa0462540 | MtrunA17_Chr3g0137951 | 60.843 | 166 | 60 | 3 | 10 | 173 | 30 | 192 | 2.78e-48 | 172 |
| Msa0462540 | MtrunA17_Chr1g0201731 | 55.422 | 83 | 37 | 0 | 15 | 97 | 38 | 120 | 1.54e-27 | 112 |
| Msa0462540 | MtrunA17_Chr4g0073711 | 63.380 | 71 | 26 | 0 | 8 | 78 | 25 | 95 | 6.71e-27 | 110 |
| Msa0462540 | MtrunA17_Chr3g0088821 | 31.579 | 228 | 125 | 5 | 10 | 224 | 11 | 220 | 1.39e-25 | 107 |
| Msa0462540 | MtrunA17_Chr8g0352231 | 38.286 | 175 | 87 | 8 | 10 | 167 | 11 | 181 | 3.52e-24 | 102 |
| Msa0462540 | MtrunA17_Chr8g0383701 | 35.196 | 179 | 96 | 5 | 10 | 173 | 29 | 202 | 3.64e-24 | 102 |
| Msa0462540 | MtrunA17_Chr8g0364641 | 59.155 | 71 | 29 | 0 | 8 | 78 | 25 | 95 | 6.10e-24 | 102 |
| Msa0462540 | MtrunA17_Chr7g0236891 | 50.000 | 132 | 60 | 1 | 176 | 301 | 40 | 171 | 8.89e-24 | 95.5 |
| Msa0462540 | MtrunA17_Chr2g0296991 | 50.000 | 84 | 41 | 1 | 11 | 93 | 28 | 111 | 9.39e-24 | 101 |
| Msa0462540 | MtrunA17_Chr3g0078671 | 53.731 | 67 | 31 | 0 | 12 | 78 | 31 | 97 | 8.75e-20 | 89.7 |
| Msa0462540 | MtrunA17_Chr7g0267741 | 48.387 | 62 | 32 | 0 | 12 | 73 | 1 | 62 | 8.82e-14 | 65.5 |
| Msa0462540 | MtrunA17_Chr8g0379241 | 38.710 | 62 | 38 | 0 | 17 | 78 | 6 | 67 | 8.26e-12 | 65.9 |
| Msa0462540 | MtrunA17_Chr2g0284211 | 43.548 | 62 | 32 | 1 | 20 | 78 | 9 | 70 | 6.19e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462540 | AT5G11260.1 | 72.519 | 131 | 35 | 1 | 174 | 303 | 33 | 163 | 8.84e-56 | 178 |
| Msa0462540 | AT5G11260.2 | 72.174 | 115 | 31 | 1 | 174 | 287 | 33 | 147 | 2.98e-50 | 165 |
| Msa0462540 | AT4G32410.1 | 59.639 | 166 | 61 | 4 | 9 | 173 | 28 | 188 | 1.09e-48 | 174 |
| Msa0462540 | AT2G25540.1 | 59.091 | 132 | 50 | 2 | 10 | 140 | 23 | 151 | 1.39e-44 | 162 |
| Msa0462540 | AT3G17609.2 | 55.372 | 121 | 47 | 3 | 176 | 291 | 23 | 141 | 4.12e-33 | 119 |
| Msa0462540 | AT3G17609.3 | 54.867 | 113 | 44 | 3 | 184 | 291 | 2 | 112 | 2.26e-30 | 111 |
| Msa0462540 | AT3G17609.4 | 63.750 | 80 | 29 | 0 | 212 | 291 | 47 | 126 | 1.68e-28 | 107 |
| Msa0462540 | AT3G17609.1 | 63.750 | 80 | 29 | 0 | 212 | 291 | 48 | 127 | 1.71e-28 | 107 |
| Msa0462540 | AT5G17420.1 | 60.563 | 71 | 28 | 0 | 8 | 78 | 25 | 95 | 1.23e-26 | 110 |
| Msa0462540 | AT5G09870.1 | 40.123 | 162 | 88 | 5 | 10 | 170 | 29 | 182 | 6.56e-24 | 102 |
| Msa0462540 | AT5G05170.1 | 39.130 | 184 | 80 | 7 | 10 | 170 | 10 | 184 | 1.46e-23 | 101 |
| Msa0462540 | AT4G39350.1 | 56.522 | 69 | 30 | 0 | 10 | 78 | 29 | 97 | 8.50e-23 | 99.4 |
| Msa0462540 | AT5G64740.1 | 57.971 | 69 | 29 | 0 | 10 | 78 | 29 | 97 | 3.92e-22 | 97.4 |
| Msa0462540 | AT5G44030.2 | 42.529 | 87 | 48 | 1 | 14 | 98 | 17 | 103 | 6.44e-20 | 90.9 |
| Msa0462540 | AT5G44030.1 | 42.529 | 87 | 48 | 1 | 14 | 98 | 17 | 103 | 9.56e-20 | 90.1 |
| Msa0462540 | AT2G21770.1 | 54.545 | 66 | 30 | 0 | 13 | 78 | 32 | 97 | 1.85e-19 | 89.4 |
| Msa0462540 | AT4G18780.1 | 33.333 | 111 | 64 | 2 | 19 | 128 | 8 | 109 | 2.62e-13 | 70.9 |
Find 102 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCATTCAAATTCTTTA+AGG | 0.156035 | 3_3:+61592555 | None:intergenic |
| CCATTCAAATTTAGGTAGTA+TGG | 0.223722 | 3_3:-61589346 | Msa0462540:three_prime_UTR |
| AAGATGATGTCGACGATTTA+AGG | 0.228388 | 3_3:-61592251 | Msa0462540:CDS |
| AACTTTCTCCATTCAAATTT+AGG | 0.256523 | 3_3:-61589354 | Msa0462540:three_prime_UTR |
| ACCATTTGTTGAGGATATAA+AGG | 0.258610 | 3_3:-61589278 | Msa0462540:three_prime_UTR |
| TGCTGGTCCAGAACGTGTTC+AGG | 0.289263 | 3_3:-61590670 | Msa0462540:CDS |
| TAGCCGTTTGCTTTCTTTGT+CGG | 0.302350 | 3_3:+61590608 | None:intergenic |
| AACTCTGTACCTGGTTGCTT+TGG | 0.303795 | 3_3:+61591465 | None:intergenic |
| CTAATTTCATTCAGCATTGT+TGG | 0.308963 | 3_3:+61589710 | None:intergenic |
| GCTGACCTCTCTTCATCTTC+TGG | 0.318002 | 3_3:-61592168 | Msa0462540:CDS |
| GCAAGCAAGGGAGAGGAAAA+AGG | 0.332419 | 3_3:-61590435 | Msa0462540:CDS |
| GCAGATTCACCTCCCATATC+TGG | 0.342040 | 3_3:+61590729 | None:intergenic |
| ATTCTTTCTAGGTGTGCATT+TGG | 0.342651 | 3_3:-61589612 | Msa0462540:three_prime_UTR |
| CCAGCACCCTGAACACGTTC+TGG | 0.345136 | 3_3:+61590663 | None:intergenic |
| GCAAACTACATCAGGTCCTT+TGG | 0.365962 | 3_3:-61591526 | Msa0462540:CDS |
| TTTACGAGAGGCTGATGTTC+CGG | 0.366238 | 3_3:+61590707 | None:intergenic |
| TGACCATTCAAATTCTTTAA+GGG | 0.374526 | 3_3:+61592556 | None:intergenic |
| GATCAGAAGAGTGCCAGATA+TGG | 0.377906 | 3_3:-61590742 | Msa0462540:CDS |
| CGTTTGCTTTCTTTGTCGGC+TGG | 0.382290 | 3_3:+61590612 | None:intergenic |
| TCTTGCATTGTGGACATGAT+TGG | 0.409151 | 3_3:+61592410 | None:intergenic |
| ATTGATTGTCTTAAACCTCT+TGG | 0.409512 | 3_3:-61589209 | Msa0462540:three_prime_UTR |
| AGTGATAATCAAAACTTAAG+AGG | 0.411538 | 3_3:-61589689 | Msa0462540:three_prime_UTR |
| CCAGAACGTGTTCAGGGTGC+TGG | 0.423989 | 3_3:-61590663 | Msa0462540:CDS |
| TTAAGGAATGAGGTCAAGTA+TGG | 0.424236 | 3_3:-61592234 | Msa0462540:CDS |
| CCATTTGTTGAGGATATAAA+GGG | 0.426493 | 3_3:-61589277 | Msa0462540:three_prime_UTR |
| GGTATACTATATATAGATAG+TGG | 0.427771 | 3_3:-61589188 | Msa0462540:three_prime_UTR |
| CAAACTACATCAGGTCCTTT+GGG | 0.435196 | 3_3:-61591525 | Msa0462540:CDS |
| CCATCTCACAAATGGACAAC+TGG | 0.446482 | 3_3:-61592121 | Msa0462540:intron |
| CAAAATCCCCATCTCACAAA+TGG | 0.448984 | 3_3:-61592129 | Msa0462540:CDS |
| CCCTTTATATCCTCAACAAA+TGG | 0.452208 | 3_3:+61589277 | None:intergenic |
| CAGTTGTCCATTTGTGAGAT+GGG | 0.452668 | 3_3:+61592122 | None:intergenic |
| GCTCTGAATTCTTCTTCTCT+AGG | 0.454026 | 3_3:+61590378 | None:intergenic |
| AAACCCTTAAAGAATTTGAA+TGG | 0.465051 | 3_3:-61592559 | Msa0462540:CDS |
| CCAGTTGTCCATTTGTGAGA+TGG | 0.468711 | 3_3:+61592121 | None:intergenic |
| GTTTGCTTTCTTTGTCGGCT+GGG | 0.469429 | 3_3:+61590613 | None:intergenic |
| GTGAAGCACTGACATGAAAA+CGG | 0.473292 | 3_3:-61589511 | Msa0462540:three_prime_UTR |
| CAATCTGTGCAAACTACATC+AGG | 0.479607 | 3_3:-61591534 | Msa0462540:CDS |
| ACGGGACATGTAATTGACTT+TGG | 0.479948 | 3_3:-61589492 | Msa0462540:three_prime_UTR |
| ATCAGAAGAGTGCCAGATAT+GGG | 0.480465 | 3_3:-61590741 | Msa0462540:CDS |
| GTATGATATAACTTCACAAA+TGG | 0.481787 | 3_3:+61589243 | None:intergenic |
| CCATACTACCTAAATTTGAA+TGG | 0.483920 | 3_3:+61589346 | None:intergenic |
| TAACTTGTGAGAAATTGATC+TGG | 0.490744 | 3_3:-61592651 | Msa0462540:five_prime_UTR |
| GAGTTTCAGCTCAGCAAGCA+AGG | 0.496174 | 3_3:-61590448 | Msa0462540:CDS |
| AAAGGCACTGGTTCAACTGC+TGG | 0.500784 | 3_3:-61590687 | Msa0462540:CDS |
| TGCTAAGGCAGGATGGCAAT+GGG | 0.509509 | 3_3:-61592199 | Msa0462540:CDS |
| TGAAAATCAAATGCTGAGAC+AGG | 0.509539 | 3_3:-61590327 | Msa0462540:intron |
| TGAAGCACTGACATGAAAAC+GGG | 0.511180 | 3_3:-61589510 | Msa0462540:three_prime_UTR |
| ATTCTTGTTATGAATACGAA+TGG | 0.515816 | 3_3:-61592444 | Msa0462540:CDS |
| CAGCCGACAAAGAAAGCAAA+CGG | 0.518077 | 3_3:-61590611 | Msa0462540:CDS |
| AAGAAAGCAAACGGCTAAAG+AGG | 0.525143 | 3_3:-61590602 | Msa0462540:intron |
| ATGCTAAGGCAGGATGGCAA+TGG | 0.525935 | 3_3:-61592200 | Msa0462540:CDS |
| CAAATATGTGGTGATACTGT+TGG | 0.528030 | 3_3:-61592526 | Msa0462540:CDS |
| CAGCTCAGCAAGCAAGGGAG+AGG | 0.533112 | 3_3:-61590442 | Msa0462540:CDS |
| GCTGGTCCAGAACGTGTTCA+GGG | 0.533529 | 3_3:-61590669 | Msa0462540:CDS |
| CGTGTTCAGGGTGCTGGAGA+GGG | 0.536653 | 3_3:-61590657 | Msa0462540:CDS |
| TCAGATGATCCTCGTGTGAA+AGG | 0.548859 | 3_3:-61592285 | Msa0462540:intron |
| ATGGATGTTACCATTTGTTG+AGG | 0.552414 | 3_3:-61589287 | Msa0462540:three_prime_UTR |
| TGTGAGAAATTGATCTGGAT+AGG | 0.554184 | 3_3:-61592646 | Msa0462540:five_prime_UTR |
| CAAGGAAATAATGCTAAGGC+AGG | 0.555264 | 3_3:-61592210 | Msa0462540:CDS |
| TGGTTGCTTTGGATCAACAT+AGG | 0.561478 | 3_3:+61591476 | None:intergenic |
| AAAGGCATACTTGAGTGACT+TGG | 0.562983 | 3_3:-61590417 | Msa0462540:CDS |
| AACACTACAGCTAGCAGGAG+AGG | 0.568592 | 3_3:-61589747 | Msa0462540:CDS |
| ACGTGTTCAGGGTGCTGGAG+AGG | 0.570680 | 3_3:-61590658 | Msa0462540:CDS |
| TCAGCCTCTCGTAAAGGCAC+TGG | 0.570711 | 3_3:-61590699 | Msa0462540:CDS |
| GGAACATCAGCCTCTCGTAA+AGG | 0.572244 | 3_3:-61590705 | Msa0462540:CDS |
| TGAAGAACACTACAGCTAGC+AGG | 0.574364 | 3_3:-61589752 | Msa0462540:CDS |
| GAAATAATGCTAAGGCAGGA+TGG | 0.579382 | 3_3:-61592206 | Msa0462540:CDS |
| GTATGGAGGTGAGTTACTAT+CGG | 0.580071 | 3_3:-61589329 | Msa0462540:three_prime_UTR |
| GTGCATTTGGAATTTCATGA+AGG | 0.584245 | 3_3:-61589599 | Msa0462540:three_prime_UTR |
| AGTTGTCCATTTGTGAGATG+GGG | 0.584444 | 3_3:+61592123 | None:intergenic |
| AATGAGGTCAAGTATGGTCA+AGG | 0.586685 | 3_3:-61592228 | Msa0462540:CDS |
| GTGATAATCAAAACTTAAGA+GGG | 0.592420 | 3_3:-61589688 | Msa0462540:three_prime_UTR |
| ACTGTTGGATTAACAGCCAC+CGG | 0.592728 | 3_3:-61592511 | Msa0462540:CDS |
| AGTTTCAGCTCAGCAAGCAA+GGG | 0.598096 | 3_3:-61590447 | Msa0462540:CDS |
| TGGTCAAGGAAATAATGCTA+AGG | 0.601648 | 3_3:-61592214 | Msa0462540:CDS |
| GTATACTATATATAGATAGT+GGG | 0.604487 | 3_3:-61589187 | Msa0462540:three_prime_UTR |
| GGTCAAATCTGTCAAATATG+TGG | 0.604762 | 3_3:-61592538 | Msa0462540:CDS |
| TTGAATCTAGTCTTGCATTG+TGG | 0.607208 | 3_3:+61592400 | None:intergenic |
| CATAACAAGAATAACAAAGT+GGG | 0.607961 | 3_3:+61592455 | None:intergenic |
| TGTCGACGATTTAAGGAATG+AGG | 0.608917 | 3_3:-61592244 | Msa0462540:CDS |
| TTCAAATTTAGGTAGTATGG+AGG | 0.610153 | 3_3:-61589343 | Msa0462540:three_prime_UTR |
| AGCAGGAGAGGAAGCAACGG+TGG | 0.611550 | 3_3:-61589735 | Msa0462540:CDS |
| GCAAGCAACAAAGACTTCGC+CGG | 0.615968 | 3_3:+61592492 | None:intergenic |
| GCTAGCAGGAGAGGAAGCAA+CGG | 0.617888 | 3_3:-61589738 | Msa0462540:CDS |
| TATGTTGATCCAAAGCAACC+AGG | 0.626073 | 3_3:-61591474 | Msa0462540:intron |
| AGCAACAAAGACTTCGCCGG+TGG | 0.627106 | 3_3:+61592495 | None:intergenic |
| TGAACCAGTGCCTTTACGAG+AGG | 0.628738 | 3_3:+61590695 | None:intergenic |
| TCATAACAAGAATAACAAAG+TGG | 0.629424 | 3_3:+61592454 | None:intergenic |
| ACTAGATTCAAAAGTCACAA+AGG | 0.638228 | 3_3:-61592388 | Msa0462540:intron |
| GATATGGGAGGTGAATCTGC+CGG | 0.641842 | 3_3:-61590726 | Msa0462540:CDS |
| GATGATCCTCGTGTGAAAGG+AGG | 0.647302 | 3_3:-61592282 | Msa0462540:CDS |
| GGAGAGGGTCAAAAGAAGAG+AGG | 0.648990 | 3_3:-61590642 | Msa0462540:CDS |
| CATGTCCAGAAGATGAAGAG+AGG | 0.650710 | 3_3:+61592163 | None:intergenic |
| AAAATGGTAATAGGCTACTG+AGG | 0.652705 | 3_3:-61590475 | Msa0462540:intron |
| ACAAGAATAACAAAGTGGGA+AGG | 0.660604 | 3_3:+61592459 | None:intergenic |
| TGAGTATCAGAAGTAGCACA+TGG | 0.676546 | 3_3:+61591555 | None:intergenic |
| TCATCACCTCCTTTCACACG+AGG | 0.678203 | 3_3:+61592276 | None:intergenic |
| TCTATATATAGTATACCAAG+AGG | 0.679813 | 3_3:+61589194 | None:intergenic |
| GTGTAAAACACTGATACATG+AGG | 0.689531 | 3_3:+61589424 | None:intergenic |
| AGAAGAGTGCCAGATATGGG+AGG | 0.694389 | 3_3:-61590738 | Msa0462540:CDS |
| AAAGTGGGAAGGAACACTCG+TGG | 0.715900 | 3_3:+61592470 | None:intergenic |
| TCCAGGTCTTGAGAGTGACG+AGG | 0.727846 | 3_3:-61590766 | Msa0462540:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGTAATAATTTCATTA+TGG | - | chr3_3:61592553-61592572 | Msa0462540:CDS | 10.0% |
| !! | TTAACTTATATATTCACAAT+TGG | - | chr3_3:61589829-61589848 | Msa0462540:intron | 15.0% |
| !!! | TCATTTGAACTTTTTAAAAT+CGG | - | chr3_3:61590002-61590021 | Msa0462540:intron | 15.0% |
| !! | GTTTAAGAAAGTAAAATTTA+TGG | - | chr3_3:61590069-61590088 | Msa0462540:intron | 15.0% |
| !! | ATCATATGTGAAATAATATT+TGG | - | chr3_3:61590220-61590239 | Msa0462540:intron | 15.0% |
| !!! | ATACTAACTGTATATTTTTA+TGG | - | chr3_3:61590262-61590281 | Msa0462540:intron | 15.0% |
| !!! | TCTAAAATATTGTTTTAGAA+AGG | - | chr3_3:61591747-61591766 | Msa0462540:intron | 15.0% |
| !! | AAAGTTTATGCATATTGAAA+AGG | + | chr3_3:61590514-61590533 | None:intergenic | 20.0% |
| !! | ATAGAAGTAAAAGTCTTTAT+AGG | - | chr3_3:61590568-61590587 | Msa0462540:intron | 20.0% |
| !! | CTCAATTTAGAAAATGAAAA+AGG | + | chr3_3:61590633-61590652 | None:intergenic | 20.0% |
| !! | ATACATTAAAGGAATTCTAT+CGG | + | chr3_3:61590825-61590844 | None:intergenic | 20.0% |
| !! | CATCACATGAATAAATAAAA+TGG | - | chr3_3:61591011-61591030 | Msa0462540:intron | 20.0% |
| !! | AATAAAATGGTAATCTTGAT+TGG | - | chr3_3:61591024-61591043 | Msa0462540:intron | 20.0% |
| !! | AATACTAACAATATTGACAT+AGG | + | chr3_3:61591930-61591949 | None:intergenic | 20.0% |
| !! | TTCATTTAATGGTATATGAT+TGG | - | chr3_3:61592070-61592089 | Msa0462540:intron | 20.0% |
| !! | GTATACTATATATAGATAGT+GGG | - | chr3_3:61592672-61592691 | Msa0462540:five_prime_UTR | 20.0% |
| ! | AAACCCTTAAAGAATTTGAA+TGG | - | chr3_3:61589300-61589319 | Msa0462540:three_prime_UTR | 25.0% |
| ! | TGACCATTCAAATTCTTTAA+GGG | + | chr3_3:61589306-61589325 | None:intergenic | 25.0% |
| ! | TTGACCATTCAAATTCTTTA+AGG | + | chr3_3:61589307-61589326 | None:intergenic | 25.0% |
| ! | CATAACAAGAATAACAAAGT+GGG | + | chr3_3:61589407-61589426 | None:intergenic | 25.0% |
| ! | TCATAACAAGAATAACAAAG+TGG | + | chr3_3:61589408-61589427 | None:intergenic | 25.0% |
| !! | ATTCTTGTTATGAATACGAA+TGG | - | chr3_3:61589415-61589434 | Msa0462540:three_prime_UTR | 25.0% |
| !! | AATTTTCAGACTCTTGAATT+TGG | - | chr3_3:61589776-61589795 | Msa0462540:intron | 25.0% |
| !! | ATAAGTTAACACATTTTTGC+AGG | + | chr3_3:61589818-61589837 | None:intergenic | 25.0% |
| ! | AACATTAAAAGTGAAGAAGT+AGG | + | chr3_3:61589880-61589899 | None:intergenic | 25.0% |
| !!! | TTCTATTGTGAGTATTTTGA+AGG | + | chr3_3:61590554-61590573 | None:intergenic | 25.0% |
| !! | TTCCATTTTCTCATTATTAC+CGG | - | chr3_3:61590941-61590960 | Msa0462540:intron | 25.0% |
| !!! | ATAAAATACTAGCATTGACA+TGG | + | chr3_3:61590982-61591001 | None:intergenic | 25.0% |
| ! | ATGAATCAATCATAGGAAAA+AGG | + | chr3_3:61591325-61591344 | None:intergenic | 25.0% |
| ! | AAATGCTATGAATCAATCAT+AGG | + | chr3_3:61591332-61591351 | None:intergenic | 25.0% |
| !!! | GTAATTTGTTTGTTACATTG+TGG | - | chr3_3:61591355-61591374 | Msa0462540:intron | 25.0% |
| ! | GGTATTATTGTTCTTTAGAT+AGG | - | chr3_3:61591643-61591662 | Msa0462540:intron | 25.0% |
| !!! | AAATGACACTCATTTTGAAA+TGG | + | chr3_3:61591785-61591804 | None:intergenic | 25.0% |
| !!! | TTCAAAATGAGTGTCATTTA+AGG | - | chr3_3:61591786-61591805 | Msa0462540:intron | 25.0% |
| ! | ATACACACCAATAATTGATA+GGG | + | chr3_3:61591874-61591893 | None:intergenic | 25.0% |
| ! | TGTTAGTATTATGTTTAGAG+TGG | - | chr3_3:61591940-61591959 | Msa0462540:intron | 25.0% |
| !! | GTTAGTATTATGTTTAGAGT+GGG | - | chr3_3:61591941-61591960 | Msa0462540:intron | 25.0% |
| !! | TTAGTATTATGTTTAGAGTG+GGG | - | chr3_3:61591942-61591961 | Msa0462540:intron | 25.0% |
| !!! | AATTTTTGGGGATAAAATGA+TGG | + | chr3_3:61592016-61592035 | None:intergenic | 25.0% |
| ! | TGAACTAGAATATGCAAATT+TGG | + | chr3_3:61592054-61592073 | None:intergenic | 25.0% |
| !!! | GCATATTCTAGTTCATTTAA+TGG | - | chr3_3:61592059-61592078 | Msa0462540:intron | 25.0% |
| ! | AGTGATAATCAAAACTTAAG+AGG | - | chr3_3:61592170-61592189 | Msa0462540:CDS | 25.0% |
| ! | GTGATAATCAAAACTTAAGA+GGG | - | chr3_3:61592171-61592190 | Msa0462540:CDS | 25.0% |
| !!! | TAGTTTTGATGATTCTTTCT+AGG | - | chr3_3:61592236-61592255 | Msa0462540:CDS | 25.0% |
| !! | ATATCAAAACACGATGTTTT+AGG | + | chr3_3:61592328-61592347 | None:intergenic | 25.0% |
| ! | AACTTTCTCCATTCAAATTT+AGG | - | chr3_3:61592505-61592524 | Msa0462540:CDS | 25.0% |
| ! | GTATGATATAACTTCACAAA+TGG | + | chr3_3:61592619-61592638 | None:intergenic | 25.0% |
| ! | TCTATATATAGTATACCAAG+AGG | + | chr3_3:61592668-61592687 | None:intergenic | 25.0% |
| ! | GGTATACTATATATAGATAG+TGG | - | chr3_3:61592671-61592690 | Msa0462540:five_prime_UTR | 25.0% |
| ! | TAACTTGTGAGAAATTGATC+TGG | - | chr3_3:61589208-61589227 | Msa0462540:three_prime_UTR | 30.0% |
| ACTAGATTCAAAAGTCACAA+AGG | - | chr3_3:61589471-61589490 | Msa0462540:three_prime_UTR | 30.0% | |
| !! | TATTTTTATGGTCAGATGTC+TGG | - | chr3_3:61590274-61590293 | Msa0462540:intron | 30.0% |
| GACACAGAAAAACAAAATTG+TGG | + | chr3_3:61590596-61590615 | None:intergenic | 30.0% | |
| ! | TCTAAATTGAGAGTCAGTTT+TGG | - | chr3_3:61590642-61590661 | Msa0462540:CDS | 30.0% |
| ! | ACTTTTGAACAAACACTTGT+AGG | - | chr3_3:61590668-61590687 | Msa0462540:CDS | 30.0% |
| ! | ATTGGCCTAGATAATTTACT+TGG | - | chr3_3:61591042-61591061 | Msa0462540:intron | 30.0% |
| TTGGCCTAGATAATTTACTT+GGG | - | chr3_3:61591043-61591062 | Msa0462540:intron | 30.0% | |
| CAAACCCAAGTAAATTATCT+AGG | + | chr3_3:61591050-61591069 | None:intergenic | 30.0% | |
| AGAACAATAATACCATGACA+GGG | + | chr3_3:61591637-61591656 | None:intergenic | 30.0% | |
| AAGAACAATAATACCATGAC+AGG | + | chr3_3:61591638-61591657 | None:intergenic | 30.0% | |
| AAACCAACCCTATCAATTAT+TGG | - | chr3_3:61591864-61591883 | Msa0462540:intron | 30.0% | |
| GATACACACCAATAATTGAT+AGG | + | chr3_3:61591875-61591894 | None:intergenic | 30.0% | |
| ! | ATTCACAGGGAGAAATTTTT+GGG | + | chr3_3:61592029-61592048 | None:intergenic | 30.0% |
| ! | AATTCACAGGGAGAAATTTT+TGG | + | chr3_3:61592030-61592049 | None:intergenic | 30.0% |
| CTAATTTCATTCAGCATTGT+TGG | + | chr3_3:61592152-61592171 | None:intergenic | 30.0% | |
| ! | AGGATAAAACACGATGTTTT+AGG | + | chr3_3:61592308-61592327 | None:intergenic | 30.0% |
| CCATACTACCTAAATTTGAA+TGG | + | chr3_3:61592516-61592535 | None:intergenic | 30.0% | |
| CCATTCAAATTTAGGTAGTA+TGG | - | chr3_3:61592513-61592532 | Msa0462540:CDS | 30.0% | |
| TTCAAATTTAGGTAGTATGG+AGG | - | chr3_3:61592516-61592535 | Msa0462540:CDS | 30.0% | |
| ! | ACCATTTGTTGAGGATATAA+AGG | - | chr3_3:61592581-61592600 | Msa0462540:CDS | 30.0% |
| ! | CCATTTGTTGAGGATATAAA+GGG | - | chr3_3:61592582-61592601 | Msa0462540:CDS | 30.0% |
| ATTGATTGTCTTAAACCTCT+TGG | - | chr3_3:61592650-61592669 | Msa0462540:five_prime_UTR | 30.0% | |
| TGTGAGAAATTGATCTGGAT+AGG | - | chr3_3:61589213-61589232 | Msa0462540:three_prime_UTR | 35.0% | |
| GGTCAAATCTGTCAAATATG+TGG | - | chr3_3:61589321-61589340 | Msa0462540:three_prime_UTR | 35.0% | |
| CAAATATGTGGTGATACTGT+TGG | - | chr3_3:61589333-61589352 | Msa0462540:three_prime_UTR | 35.0% | |
| ACAAGAATAACAAAGTGGGA+AGG | + | chr3_3:61589403-61589422 | None:intergenic | 35.0% | |
| !! | TTGAATCTAGTCTTGCATTG+TGG | + | chr3_3:61589462-61589481 | None:intergenic | 35.0% |
| ATCCACATTCATCTTGTTCA+TGG | + | chr3_3:61589553-61589572 | None:intergenic | 35.0% | |
| AAGATGATGTCGACGATTTA+AGG | - | chr3_3:61589608-61589627 | Msa0462540:three_prime_UTR | 35.0% | |
| TTAAGGAATGAGGTCAAGTA+TGG | - | chr3_3:61589625-61589644 | Msa0462540:three_prime_UTR | 35.0% | |
| TGGTCAAGGAAATAATGCTA+AGG | - | chr3_3:61589645-61589664 | Msa0462540:three_prime_UTR | 35.0% | |
| ! | ATTTTGAGCCAAGATGTAGA+AGG | - | chr3_3:61590136-61590155 | Msa0462540:intron | 35.0% |
| ! | TTTTGAGCCAAGATGTAGAA+GGG | - | chr3_3:61590137-61590156 | Msa0462540:intron | 35.0% |
| TGCTACACTACAATCATTTC+AGG | + | chr3_3:61590422-61590441 | None:intergenic | 35.0% | |
| GTGTAGCATATCACATTTCA+TGG | - | chr3_3:61590434-61590453 | Msa0462540:CDS | 35.0% | |
| !! | GTATTTTGAAGGAACTGGAA+AGG | + | chr3_3:61590543-61590562 | None:intergenic | 35.0% |
| !! | TGTGAGTATTTTGAAGGAAC+TGG | + | chr3_3:61590548-61590567 | None:intergenic | 35.0% |
| CAACAGGAGTGATACATTAA+AGG | + | chr3_3:61590836-61590855 | None:intergenic | 35.0% | |
| ! | CTGAAGTGTTAGTATCACAT+GGG | + | chr3_3:61590870-61590889 | None:intergenic | 35.0% |
| ! | TCTGAAGTGTTAGTATCACA+TGG | + | chr3_3:61590871-61590890 | None:intergenic | 35.0% |
| CACCGGTAATAATGAGAAAA+TGG | + | chr3_3:61590946-61590965 | None:intergenic | 35.0% | |
| GTTTGAACTCTTAGTGACTT+TGG | - | chr3_3:61591065-61591084 | Msa0462540:intron | 35.0% | |
| !! | TAGTGACTTTGGAATAATCC+AGG | - | chr3_3:61591076-61591095 | Msa0462540:intron | 35.0% |
| CAATCATAGGAAAAAGGAGT+TGG | + | chr3_3:61591319-61591338 | None:intergenic | 35.0% | |
| TACATTGTGGCGTGTAAAAA+TGG | - | chr3_3:61591368-61591387 | Msa0462540:intron | 35.0% | |
| TGGCGTGTAAAAATGGTAAT+AGG | - | chr3_3:61591375-61591394 | Msa0462540:intron | 35.0% | |
| AAAATGGTAATAGGCTACTG+AGG | - | chr3_3:61591384-61591403 | Msa0462540:intron | 35.0% | |
| TGAAAATCAAATGCTGAGAC+AGG | - | chr3_3:61591532-61591551 | Msa0462540:CDS | 35.0% | |
| ! | CAAAGGCATGTTGATGTAAT+TGG | + | chr3_3:61591576-61591595 | None:intergenic | 35.0% |
| TTTAGATAGGTTACATGAGC+TGG | - | chr3_3:61591656-61591675 | Msa0462540:intron | 35.0% | |
| !!! | GACACTCATTTTGAAATGGA+GGG | + | chr3_3:61591781-61591800 | None:intergenic | 35.0% |
| !!! | TGACACTCATTTTGAAATGG+AGG | + | chr3_3:61591782-61591801 | None:intergenic | 35.0% |
| ACACCAATAATTGATAGGGT+TGG | + | chr3_3:61591870-61591889 | None:intergenic | 35.0% | |
| !! | AAAATGATGGTTTGGTGGAA+GGG | + | chr3_3:61592003-61592022 | None:intergenic | 35.0% |
| !! | TAAAATGATGGTTTGGTGGA+AGG | + | chr3_3:61592004-61592023 | None:intergenic | 35.0% |
| TTGGGGATAAAATGATGGTT+TGG | + | chr3_3:61592011-61592030 | None:intergenic | 35.0% | |
| ! | TTCACAGGGAGAAATTTTTG+GGG | + | chr3_3:61592028-61592047 | None:intergenic | 35.0% |
| TGCAAATTTGGCAATTCACA+GGG | + | chr3_3:61592042-61592061 | None:intergenic | 35.0% | |
| ATGCAAATTTGGCAATTCAC+AGG | + | chr3_3:61592043-61592062 | None:intergenic | 35.0% | |
| ATTCTTTCTAGGTGTGCATT+TGG | - | chr3_3:61592247-61592266 | Msa0462540:CDS | 35.0% | |
| ! | GTGCATTTGGAATTTCATGA+AGG | - | chr3_3:61592260-61592279 | Msa0462540:CDS | 35.0% |
| GTGTAAAACACTGATACATG+AGG | + | chr3_3:61592438-61592457 | None:intergenic | 35.0% | |
| ! | ATGGATGTTACCATTTGTTG+AGG | - | chr3_3:61592572-61592591 | Msa0462540:CDS | 35.0% |
| CCCTTTATATCCTCAACAAA+TGG | + | chr3_3:61592585-61592604 | None:intergenic | 35.0% | |
| TCTTGCATTGTGGACATGAT+TGG | + | chr3_3:61589452-61589471 | None:intergenic | 40.0% | |
| !! | AAGGTTAGCTTGTGATCACA+TGG | - | chr3_3:61589490-61589509 | Msa0462540:three_prime_UTR | 40.0% |
| TCATGGCAAATTCTGATGAG+AGG | + | chr3_3:61589536-61589555 | None:intergenic | 40.0% | |
| TGCCATGAACAAGATGAATG+TGG | - | chr3_3:61589548-61589567 | Msa0462540:intron | 40.0% | |
| TGTCGACGATTTAAGGAATG+AGG | - | chr3_3:61589615-61589634 | Msa0462540:three_prime_UTR | 40.0% | |
| AATGAGGTCAAGTATGGTCA+AGG | - | chr3_3:61589631-61589650 | Msa0462540:three_prime_UTR | 40.0% | |
| CAAGGAAATAATGCTAAGGC+AGG | - | chr3_3:61589649-61589668 | Msa0462540:three_prime_UTR | 40.0% | |
| GAAATAATGCTAAGGCAGGA+TGG | - | chr3_3:61589653-61589672 | Msa0462540:three_prime_UTR | 40.0% | |
| CAAAATCCCCATCTCACAAA+TGG | - | chr3_3:61589730-61589749 | Msa0462540:CDS | 40.0% | |
| AGTTGTCCATTTGTGAGATG+GGG | + | chr3_3:61589739-61589758 | None:intergenic | 40.0% | |
| CAGTTGTCCATTTGTGAGAT+GGG | + | chr3_3:61589740-61589759 | None:intergenic | 40.0% | |
| TGAGTATCAGAAGTAGCACA+TGG | + | chr3_3:61590307-61590326 | None:intergenic | 40.0% | |
| CAATCTGTGCAAACTACATC+AGG | - | chr3_3:61590325-61590344 | Msa0462540:intron | 40.0% | |
| CAAACTACATCAGGTCCTTT+GGG | - | chr3_3:61590334-61590353 | Msa0462540:CDS | 40.0% | |
| ! | ACATTTTCGGATTGACCCAA+AGG | + | chr3_3:61590352-61590371 | None:intergenic | 40.0% |
| ! | TGGTTGCTTTGGATCAACAT+AGG | + | chr3_3:61590386-61590405 | None:intergenic | 40.0% |
| TATGTTGATCCAAAGCAACC+AGG | - | chr3_3:61590385-61590404 | Msa0462540:CDS | 40.0% | |
| AAGAGGATTACTGGTGCTTA+TGG | + | chr3_3:61590800-61590819 | None:intergenic | 40.0% | |
| AAGGAATTCTATCGGTCAAG+AGG | + | chr3_3:61590817-61590836 | None:intergenic | 40.0% | |
| ! | CTTCAGATTGAAAGCATGTC+CGG | - | chr3_3:61590884-61590903 | Msa0462540:intron | 40.0% |
| ATTATTACCGGTGTCCTGTT+AGG | - | chr3_3:61590953-61590972 | Msa0462540:intron | 40.0% | |
| !! | ATCAGAAGAGTGCCAGATAT+GGG | - | chr3_3:61591118-61591137 | Msa0462540:intron | 40.0% |
| TAGCCGTTTGCTTTCTTTGT+CGG | + | chr3_3:61591254-61591273 | None:intergenic | 40.0% | |
| AAGAAAGCAAACGGCTAAAG+AGG | - | chr3_3:61591257-61591276 | Msa0462540:intron | 40.0% | |
| GAAAAAGGAGTTGGAGTTCA+TGG | + | chr3_3:61591310-61591329 | None:intergenic | 40.0% | |
| ! | AAAGGCATACTTGAGTGACT+TGG | - | chr3_3:61591442-61591461 | Msa0462540:intron | 40.0% |
| ! | GCTCTGAATTCTTCTTCTCT+AGG | + | chr3_3:61591484-61591503 | None:intergenic | 40.0% |
| ! | ACACAATGATGACGAGACAA+AGG | + | chr3_3:61591593-61591612 | None:intergenic | 40.0% |
| !! | AAATGATGGTTTGGTGGAAG+GGG | + | chr3_3:61592002-61592021 | None:intergenic | 40.0% |
| ! | GGGATAAAATGATGGTTTGG+TGG | + | chr3_3:61592008-61592027 | None:intergenic | 40.0% |
| !! | GTGAAGCACTGACATGAAAA+CGG | - | chr3_3:61592348-61592367 | Msa0462540:intron | 40.0% |
| !! | TGAAGCACTGACATGAAAAC+GGG | - | chr3_3:61592349-61592368 | Msa0462540:intron | 40.0% |
| ! | ACGGGACATGTAATTGACTT+TGG | - | chr3_3:61592367-61592386 | Msa0462540:intron | 40.0% |
| GTATGGAGGTGAGTTACTAT+CGG | - | chr3_3:61592530-61592549 | Msa0462540:CDS | 40.0% | |
| ACTGTTGGATTAACAGCCAC+CGG | - | chr3_3:61589348-61589367 | Msa0462540:three_prime_UTR | 45.0% | |
| TCAGATGATCCTCGTGTGAA+AGG | - | chr3_3:61589574-61589593 | Msa0462540:three_prime_UTR | 45.0% | |
| CATGTCCAGAAGATGAAGAG+AGG | + | chr3_3:61589699-61589718 | None:intergenic | 45.0% | |
| CCAGTTGTCCATTTGTGAGA+TGG | + | chr3_3:61589741-61589760 | None:intergenic | 45.0% | |
| CCATCTCACAAATGGACAAC+TGG | - | chr3_3:61589738-61589757 | Msa0462540:CDS | 45.0% | |
| TGCTGTTCCCTTCTACATCT+TGG | + | chr3_3:61590147-61590166 | None:intergenic | 45.0% | |
| GCAAACTACATCAGGTCCTT+TGG | - | chr3_3:61590333-61590352 | Msa0462540:CDS | 45.0% | |
| ! | GGCACGTGAGTGAACATTTT+CGG | + | chr3_3:61590365-61590384 | None:intergenic | 45.0% |
| AACTCTGTACCTGGTTGCTT+TGG | + | chr3_3:61590397-61590416 | None:intergenic | 45.0% | |
| TTTCAGGCTAACTCTGTACC+TGG | + | chr3_3:61590406-61590425 | None:intergenic | 45.0% | |
| !! | GCGAGTTTCTGAAATAGTCG+AGG | + | chr3_3:61590764-61590783 | None:intergenic | 45.0% |
| CTATCGGTCAAGAGGATTAC+TGG | + | chr3_3:61590809-61590828 | None:intergenic | 45.0% | |
| ATGGGTGAGTACTACACAAC+AGG | + | chr3_3:61590852-61590871 | None:intergenic | 45.0% | |
| CATTGACATGGACACCTAAC+AGG | + | chr3_3:61590970-61590989 | None:intergenic | 45.0% | |
| !! | GATCAGAAGAGTGCCAGATA+TGG | - | chr3_3:61591117-61591136 | Msa0462540:intron | 45.0% |
| TTTACGAGAGGCTGATGTTC+CGG | + | chr3_3:61591155-61591174 | None:intergenic | 45.0% | |
| ! | GTTTGCTTTCTTTGTCGGCT+GGG | + | chr3_3:61591249-61591268 | None:intergenic | 45.0% |
| CAGCCGACAAAGAAAGCAAA+CGG | - | chr3_3:61591248-61591267 | Msa0462540:intron | 45.0% | |
| AGTTTCAGCTCAGCAAGCAA+GGG | - | chr3_3:61591412-61591431 | Msa0462540:intron | 45.0% | |
| ! | TCTGTAAAGCATCCCTGTCA+TGG | - | chr3_3:61591622-61591641 | Msa0462540:intron | 45.0% |
| GGTGGAAGAGTAAAGTAAGG+AGG | + | chr3_3:61591981-61592000 | None:intergenic | 45.0% | |
| AGGGGTGGAAGAGTAAAGTA+AGG | + | chr3_3:61591984-61592003 | None:intergenic | 45.0% | |
| TGAAGAACACTACAGCTAGC+AGG | - | chr3_3:61592107-61592126 | Msa0462540:intron | 45.0% | |
| GCAAGCAACAAAGACTTCGC+CGG | + | chr3_3:61589370-61589389 | None:intergenic | 50.0% | |
| AAAGTGGGAAGGAACACTCG+TGG | + | chr3_3:61589392-61589411 | None:intergenic | 50.0% | |
| GATGATCCTCGTGTGAAAGG+AGG | - | chr3_3:61589577-61589596 | Msa0462540:three_prime_UTR | 50.0% | |
| TCATCACCTCCTTTCACACG+AGG | + | chr3_3:61589586-61589605 | None:intergenic | 50.0% | |
| ATGCTAAGGCAGGATGGCAA+TGG | - | chr3_3:61589659-61589678 | Msa0462540:three_prime_UTR | 50.0% | |
| TGCTAAGGCAGGATGGCAAT+GGG | - | chr3_3:61589660-61589679 | Msa0462540:three_prime_UTR | 50.0% | |
| GCTGACCTCTCTTCATCTTC+TGG | - | chr3_3:61589691-61589710 | Msa0462540:three_prime_UTR | 50.0% | |
| ! | CACGTGTCATTGTCAGACAC+CGG | + | chr3_3:61590906-61590925 | None:intergenic | 50.0% |
| ATGGACACCTAACAGGACAC+CGG | + | chr3_3:61590963-61590982 | None:intergenic | 50.0% | |
| !! | AGAAGAGTGCCAGATATGGG+AGG | - | chr3_3:61591121-61591140 | Msa0462540:intron | 50.0% |
| GCAGATTCACCTCCCATATC+TGG | + | chr3_3:61591133-61591152 | None:intergenic | 50.0% | |
| GATATGGGAGGTGAATCTGC+CGG | - | chr3_3:61591133-61591152 | Msa0462540:intron | 50.0% | |
| GGAACATCAGCCTCTCGTAA+AGG | - | chr3_3:61591154-61591173 | Msa0462540:intron | 50.0% | |
| TGAACCAGTGCCTTTACGAG+AGG | + | chr3_3:61591167-61591186 | None:intergenic | 50.0% | |
| !! | AAAGGCACTGGTTCAACTGC+TGG | - | chr3_3:61591172-61591191 | Msa0462540:intron | 50.0% |
| GGAGAGGGTCAAAAGAAGAG+AGG | - | chr3_3:61591217-61591236 | Msa0462540:intron | 50.0% | |
| CGTTTGCTTTCTTTGTCGGC+TGG | + | chr3_3:61591250-61591269 | None:intergenic | 50.0% | |
| GAGTTTCAGCTCAGCAAGCA+AGG | - | chr3_3:61591411-61591430 | Msa0462540:intron | 50.0% | |
| GCAAGCAAGGGAGAGGAAAA+AGG | - | chr3_3:61591424-61591443 | Msa0462540:intron | 50.0% | |
| AACACTACAGCTAGCAGGAG+AGG | - | chr3_3:61592112-61592131 | Msa0462540:intron | 50.0% | |
| AGCAACAAAGACTTCGCCGG+TGG | + | chr3_3:61589367-61589386 | None:intergenic | 55.0% | |
| TCCAGGTCTTGAGAGTGACG+AGG | - | chr3_3:61591093-61591112 | Msa0462540:intron | 55.0% | |
| TCCTCGTCACTCTCAAGACC+TGG | + | chr3_3:61591097-61591116 | None:intergenic | 55.0% | |
| ! | TCAGCCTCTCGTAAAGGCAC+TGG | - | chr3_3:61591160-61591179 | Msa0462540:intron | 55.0% |
| TGCTGGTCCAGAACGTGTTC+AGG | - | chr3_3:61591189-61591208 | Msa0462540:intron | 55.0% | |
| GCTGGTCCAGAACGTGTTCA+GGG | - | chr3_3:61591190-61591209 | Msa0462540:intron | 55.0% | |
| !! | TGATGGTTTGGTGGAAGGGG+TGG | + | chr3_3:61591999-61592018 | None:intergenic | 55.0% |
| GCTAGCAGGAGAGGAAGCAA+CGG | - | chr3_3:61592121-61592140 | Msa0462540:intron | 55.0% | |
| CCAGCACCCTGAACACGTTC+TGG | + | chr3_3:61591199-61591218 | None:intergenic | 60.0% | |
| CCAGAACGTGTTCAGGGTGC+TGG | - | chr3_3:61591196-61591215 | Msa0462540:intron | 60.0% | |
| !! | ACGTGTTCAGGGTGCTGGAG+AGG | - | chr3_3:61591201-61591220 | Msa0462540:intron | 60.0% |
| !! | CGTGTTCAGGGTGCTGGAGA+GGG | - | chr3_3:61591202-61591221 | Msa0462540:intron | 60.0% |
| CAGCTCAGCAAGCAAGGGAG+AGG | - | chr3_3:61591417-61591436 | Msa0462540:intron | 60.0% | |
| AGCAGGAGAGGAAGCAACGG+TGG | - | chr3_3:61592124-61592143 | Msa0462540:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 61589182 | 61592699 | 61589182 | ID=Msa0462540;Name=Msa0462540 |
| chr3_3 | mRNA | 61589182 | 61592699 | 61589182 | ID=Msa0462540-mRNA-1;Parent=Msa0462540;Name=Msa0462540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=91|1|1|1|0.83|0.71|7|514|306 |
| chr3_3 | exon | 61589182 | 61589548 | 61589182 | ID=Msa0462540-mRNA-1:exon:13094;Parent=Msa0462540-mRNA-1 |
| chr3_3 | exon | 61589569 | 61589778 | 61589569 | ID=Msa0462540-mRNA-1:exon:13093;Parent=Msa0462540-mRNA-1 |
| chr3_3 | exon | 61590328 | 61590484 | 61590328 | ID=Msa0462540-mRNA-1:exon:13092;Parent=Msa0462540-mRNA-1 |
| chr3_3 | exon | 61590603 | 61590783 | 61590603 | ID=Msa0462540-mRNA-1:exon:13091;Parent=Msa0462540-mRNA-1 |
| chr3_3 | exon | 61591475 | 61591592 | 61591475 | ID=Msa0462540-mRNA-1:exon:13090;Parent=Msa0462540-mRNA-1 |
| chr3_3 | exon | 61592122 | 61592303 | 61592122 | ID=Msa0462540-mRNA-1:exon:13089;Parent=Msa0462540-mRNA-1 |
| chr3_3 | exon | 61592389 | 61592699 | 61592389 | ID=Msa0462540-mRNA-1:exon:13088;Parent=Msa0462540-mRNA-1 |
| chr3_3 | five_prime_UTR | 61592609 | 61592699 | 61592609 | ID=Msa0462540-mRNA-1:five_prime_utr;Parent=Msa0462540-mRNA-1 |
| chr3_3 | CDS | 61592389 | 61592608 | 61592389 | ID=Msa0462540-mRNA-1:cds;Parent=Msa0462540-mRNA-1 |
| chr3_3 | CDS | 61592122 | 61592303 | 61592122 | ID=Msa0462540-mRNA-1:cds;Parent=Msa0462540-mRNA-1 |
| chr3_3 | CDS | 61591475 | 61591592 | 61591475 | ID=Msa0462540-mRNA-1:cds;Parent=Msa0462540-mRNA-1 |
| chr3_3 | CDS | 61590603 | 61590783 | 61590603 | ID=Msa0462540-mRNA-1:cds;Parent=Msa0462540-mRNA-1 |
| chr3_3 | CDS | 61590328 | 61590484 | 61590328 | ID=Msa0462540-mRNA-1:cds;Parent=Msa0462540-mRNA-1 |
| chr3_3 | CDS | 61589716 | 61589778 | 61589716 | ID=Msa0462540-mRNA-1:cds;Parent=Msa0462540-mRNA-1 |
| chr3_3 | three_prime_UTR | 61589569 | 61589715 | 61589569 | ID=Msa0462540-mRNA-1:three_prime_utr;Parent=Msa0462540-mRNA-1 |
| chr3_3 | three_prime_UTR | 61589182 | 61589548 | 61589182 | ID=Msa0462540-mRNA-1:three_prime_utr;Parent=Msa0462540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
