AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171210 MtrunA17_Chr1g0150551 84.461 399 16 4 1 398 2 355 0.0 608
Msa0171210 MtrunA17_Chr4g0018381 60.268 224 43 4 67 289 16 194 7.25e-89 267
Msa0171210 MtrunA17_Chr3g0089671 27.742 155 101 2 57 211 34 177 3.53e-12 67.0
Msa0171210 MtrunA17_Chr3g0143441 29.560 159 101 4 57 215 63 210 1.39e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171210 AT1G64970.1 64.350 331 73 2 64 392 60 347 2.17e-151 432
Msa0171210 AT3G18000.1 41.111 90 51 1 130 219 284 371 4.52e-13 70.9
Msa0171210 AT1G73600.1 40.000 90 52 1 130 219 283 370 1.58e-12 69.3
Msa0171210 AT1G73600.2 40.000 90 52 1 130 219 297 384 1.70e-12 69.3
Msa0171210 AT1G48600.2 40.000 90 52 1 130 219 284 371 2.29e-12 68.9
Msa0171210 AT1G48600.1 40.000 90 52 1 130 219 268 355 2.32e-12 68.9
Msa0171210 AT5G13710.1 26.452 155 103 2 57 211 34 177 2.76e-11 64.7
Msa0171210 AT5G13710.2 26.452 155 103 2 57 211 34 177 2.76e-11 64.7

Find 133 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTTTGTTGCTCCATTT+TGG 0.111682 1_4:+55847913 Msa0171210:CDS
GAAATTCTATGTGGCACTTT+TGG 0.142526 1_4:+55849154 Msa0171210:three_prime_UTR
CTGGTATATGGGAGAATATT+TGG 0.153591 1_4:+55844277 Msa0171210:CDS
AAATGCTTTCACAATTTATT+TGG 0.191484 1_4:+55849222 Msa0171210:three_prime_UTR
AGGTACCTGGCCAAGAAATT+TGG 0.197026 1_4:+55846600 Msa0171210:CDS
ACAACTTGCCCCAAATTTCT+TGG 0.230657 1_4:-55846610 None:intergenic
ACACCATGTTACTATTATTA+TGG 0.233170 1_4:-55847368 None:intergenic
TTCTCAATCTTCAATTATTT+AGG 0.236944 1_4:-55843826 None:intergenic
ATGATGAGTCTTCTGGTATA+TGG 0.237023 1_4:+55844265 Msa0171210:CDS
TACTATAAAATCATAATTCT+AGG 0.258032 1_4:-55843944 None:intergenic
GAGATTGATTACAACTTTAC+TGG 0.277224 1_4:-55847269 None:intergenic
TGGTATATGGGAGAATATTT+GGG 0.285510 1_4:+55844278 Msa0171210:CDS
CGTATCACTGCTGGCCAAAA+TGG 0.295543 1_4:-55847927 None:intergenic
GGTACCTGGCCAAGAAATTT+GGG 0.302133 1_4:+55846601 Msa0171210:CDS
TAATAGTAACATGGTGTCAT+AGG 0.305812 1_4:+55847374 Msa0171210:CDS
GCTATGCCATTGATGATAGA+AGG 0.319042 1_4:+55848576 Msa0171210:CDS
GTTGATGTTGGGTGTGGCAT+AGG 0.327476 1_4:+55846567 Msa0171210:CDS
ATTGAGCAATAACATGTTCT+TGG 0.335515 1_4:+55848914 Msa0171210:three_prime_UTR
TTGATGTTGGGTGTGGCATA+GGG 0.339110 1_4:+55846568 Msa0171210:CDS
TGTTGTAGGGATTCTTCATT+CGG 0.342059 1_4:-55847406 None:intergenic
GTGAGACGGCAAAAGAAATT+AGG 0.344649 1_4:-55847201 None:intergenic
AGGCTTTCGACATGTGATAA+TGG 0.352068 1_4:-55848625 None:intergenic
CATTGATGATAGAAGGATTC+AGG 0.353317 1_4:+55848583 Msa0171210:CDS
TTAAGAACAAAGTGAGTGTT+TGG 0.356229 1_4:+55848974 Msa0171210:three_prime_UTR
GGCCATTGTGGATGGATTGT+GGG 0.358426 1_4:+55848935 Msa0171210:three_prime_UTR
ACTTGAAACCATGTCCCTTC+AGG 0.364722 1_4:+55847510 Msa0171210:CDS
TTCAGCAGTAGAAGAAGAAA+AGG 0.367968 1_4:+55844147 Msa0171210:CDS
TTAGCTCTTTCAGCTTGAAC+AGG 0.369380 1_4:-55846651 None:intergenic
GCAAAAGAAATTAGGACCTT+TGG 0.371178 1_4:-55847193 None:intergenic
ATTAGGACCTTTGGTTTGTT+AGG 0.377795 1_4:-55847184 None:intergenic
GTTGTAGGGATTCTTCATTC+GGG 0.388840 1_4:-55847405 None:intergenic
GATCCTTCTCCCATTGTTGT+AGG 0.391437 1_4:-55847420 None:intergenic
TCTAATTTGTGTTATAGCAT+TGG 0.403101 1_4:+55849199 Msa0171210:three_prime_UTR
CCAACATCAACTACACTCTT+TGG 0.405985 1_4:-55846555 None:intergenic
GTTCTTGAACAAAACTCTAA+TGG 0.407112 1_4:+55848810 Msa0171210:three_prime_UTR
TTTCTTCTTCTACTGCTGAA+TGG 0.407358 1_4:-55844144 None:intergenic
ACTAGATCAAACTGGCCGTC+AGG 0.424197 1_4:-55847133 None:intergenic
GTTAGCACGGGTAGCAGCAC+CGG 0.429524 1_4:+55847339 Msa0171210:CDS
ACATTGAAGATGCTGATTAT+CGG 0.429863 1_4:-55848836 None:intergenic
TGGCCATTGTGGATGGATTG+TGG 0.429897 1_4:+55848934 Msa0171210:three_prime_UTR
GAAACAGAAACAGTAGAATC+AGG 0.439311 1_4:-55844330 None:intergenic
TGATGAGTCTTCTGGTATAT+GGG 0.439939 1_4:+55844266 Msa0171210:CDS
GCTCAGATGATCCATCAAAA+TGG 0.445713 1_4:+55846532 Msa0171210:intron
TCTGCCATGTCAGATCCTAC+TGG 0.450790 1_4:+55848750 Msa0171210:three_prime_UTR
CTGAACATCAAATACATAGT+TGG 0.464687 1_4:-55843874 None:intergenic
TGAAGAATCCCTACAACAAT+GGG 0.467250 1_4:+55847411 Msa0171210:CDS
GAGAAGAAGAAACTTCAGTT+AGG 0.470960 1_4:+55844228 Msa0171210:CDS
TGCTCAAGGATTAGCTGATA+AGG 0.480374 1_4:+55846686 Msa0171210:CDS
ATCCTTCTCCCATTGTTGTA+GGG 0.488458 1_4:-55847419 None:intergenic
CTGAATCCTTCTATCATCAA+TGG 0.489050 1_4:-55848582 None:intergenic
CTTACCACTTCGCAAGATTG+AGG 0.489090 1_4:-55847976 None:intergenic
CTGCCATGTCAGATCCTACT+GGG 0.490736 1_4:+55848751 Msa0171210:three_prime_UTR
GAAAGAAGCGATGGTGGTAA+TGG 0.494033 1_4:+55844197 Msa0171210:CDS
TGTGGACGCCGGTCGGTGAA+TGG 0.498180 1_4:-55849005 None:intergenic
AGTTTGTTGGTGAGTTAGCA+CGG 0.502667 1_4:+55847326 Msa0171210:CDS
CGCCGGTCGGTGAATGGATG+TGG 0.505409 1_4:-55848999 None:intergenic
TTGCCCCAAATTTCTTGGCC+AGG 0.505728 1_4:-55846605 None:intergenic
TGGGGTGATCATATGCATCA+TGG 0.511664 1_4:+55844297 Msa0171210:CDS
ATGAAGAATCCCTACAACAA+TGG 0.511742 1_4:+55847410 Msa0171210:CDS
TTGACCACACTAGATCAAAC+TGG 0.513141 1_4:-55847141 None:intergenic
AGGGTCATTGCGTCTATCAA+TGG 0.514463 1_4:+55844167 Msa0171210:CDS
CGTTCAGCATTAACATGGAA+GGG 0.521906 1_4:+55847948 Msa0171210:CDS
AGATTCTTAACTATCTCTTG+TGG 0.523094 1_4:-55849179 None:intergenic
AGGACATCAAATCAGCAGAT+TGG 0.524852 1_4:+55847889 Msa0171210:intron
AATAGTAACATGGTGTCATA+GGG 0.525266 1_4:+55847375 Msa0171210:CDS
TCAAACTGGCCGTCAGGGAA+TGG 0.527365 1_4:-55847127 None:intergenic
TATCAAAATAAATGACATGT+AGG 0.527639 1_4:-55848687 None:intergenic
GATGTTGGGTGTGGCATAGG+GGG 0.529490 1_4:+55846570 Msa0171210:CDS
GACTGAATAAGTGATATTGA+AGG 0.532518 1_4:+55848773 Msa0171210:three_prime_UTR
CCAAAGAGTGTAGTTGATGT+TGG 0.533283 1_4:+55846555 Msa0171210:CDS
TGGTACAGTAGTAGTAATGA+TGG 0.537552 1_4:-55844124 None:intergenic
TGATGTTGGGTGTGGCATAG+GGG 0.537744 1_4:+55846569 Msa0171210:CDS
AGCTGAAAGAGCTAATGCTC+TGG 0.537978 1_4:+55846659 Msa0171210:CDS
ATGTTCTTGGCCATTGTGGA+TGG 0.538737 1_4:+55848927 Msa0171210:three_prime_UTR
CAAAGAGTGTAGTTGATGTT+GGG 0.545229 1_4:+55846556 Msa0171210:CDS
AAATTTGGGGCAAGTTGTGT+AGG 0.545845 1_4:+55846615 Msa0171210:CDS
TCAGCAGTTGAGCACCACTC+TGG 0.547647 1_4:-55847475 None:intergenic
GCCATTGTGGATGGATTGTG+GGG 0.548971 1_4:+55848936 Msa0171210:three_prime_UTR
GGCCAAAATGGAGCAACAAA+GGG 0.551098 1_4:-55847915 None:intergenic
GTTTGATCTAGTGTGGTCAA+TGG 0.552518 1_4:+55847144 Msa0171210:CDS
AAGAACATGTTATTGCTCAA+TGG 0.553595 1_4:-55848912 None:intergenic
TGGCCAAAATGGAGCAACAA+AGG 0.554035 1_4:-55847916 None:intergenic
TTCCACATCCATTCACCGAC+CGG 0.556466 1_4:+55848997 Msa0171210:three_prime_UTR
TTAGCACGGGTAGCAGCACC+GGG 0.557174 1_4:+55847340 Msa0171210:CDS
ACGTTCAGCATTAACATGGA+AGG 0.559901 1_4:+55847947 Msa0171210:CDS
ACTATTATTATGGTGCCACC+CGG 0.564921 1_4:-55847358 None:intergenic
CTAGATCAAACTGGCCGTCA+GGG 0.569043 1_4:-55847132 None:intergenic
AATGCTCTGGCTGTTGCTCA+AGG 0.574221 1_4:+55846672 Msa0171210:CDS
ATTAACTACCTGAAGGGACA+TGG 0.576544 1_4:-55847518 None:intergenic
ATCCCTACAACAATGGGAGA+AGG 0.577935 1_4:+55847417 Msa0171210:CDS
TCAGCAGTAGAAGAAGAAAA+GGG 0.587307 1_4:+55844148 Msa0171210:CDS
TCTAGGTACACACGAAACTA+CGG 0.588897 1_4:-55843927 None:intergenic
AATGCTGAACGTATCACTGC+TGG 0.591367 1_4:-55847936 None:intergenic
GGCGGCGGTGAAAGAAGCGA+TGG 0.597232 1_4:+55844188 Msa0171210:CDS
TAGCTCTTTCAGCTTGAACA+GGG 0.597928 1_4:-55846650 None:intergenic
TAACATGTTCTTGGCCATTG+TGG 0.598975 1_4:+55848923 Msa0171210:three_prime_UTR
TAGAGCGTCAGCAACTTGAA+AGG 0.605316 1_4:-55847098 None:intergenic
GAAAGCATGTGGACGCCGGT+CGG 0.606789 1_4:-55849012 None:intergenic
AGCGCGTGTACCGTTGCAAG+TGG 0.608895 1_4:+55844011 Msa0171210:five_prime_UTR
AGTGTAGTTGATGTTGGGTG+TGG 0.612189 1_4:+55846561 Msa0171210:CDS
ATATTAATTAACTACCTGAA+GGG 0.613275 1_4:-55847524 None:intergenic
CTTTCACAGTAGAAAGCATG+TGG 0.614726 1_4:-55849023 None:intergenic
TCGAAAGCCTGAAAACGCAG+AGG 0.616363 1_4:+55848638 Msa0171210:CDS
GTTTGTTGGTGAGTTAGCAC+GGG 0.616520 1_4:+55847327 Msa0171210:CDS
ATTGCGTCTATCAATGGCGG+CGG 0.617943 1_4:+55844173 Msa0171210:CDS
GGCGGTGAAAGAAGCGATGG+TGG 0.621331 1_4:+55844191 Msa0171210:CDS
TTGTAGGGATTCTTCATTCG+GGG 0.621575 1_4:-55847404 None:intergenic
TGATACGTTCAGCATTAACA+TGG 0.622052 1_4:+55847943 Msa0171210:CDS
GGTATATGGGAGAATATTTG+GGG 0.625495 1_4:+55844279 Msa0171210:CDS
TTGTGTGTTACCACTTGCAA+CGG 0.629244 1_4:-55844021 None:intergenic
TTCACCTCAATCTTGCGAAG+TGG 0.629679 1_4:+55847972 Msa0171210:CDS
ATGGTATCTCTGTGGTGCTG+AGG 0.633262 1_4:-55844105 None:intergenic
GATGATAGAAGGATTCAGGA+AGG 0.633554 1_4:+55848587 Msa0171210:CDS
ATGATAGAAGGATTCAGGAA+GGG 0.634567 1_4:+55848588 Msa0171210:CDS
TGTAGCACTGGAGTATGATG+TGG 0.635922 1_4:+55848886 Msa0171210:three_prime_UTR
ACGGCCAGTTTGATCTAGTG+TGG 0.645283 1_4:+55847137 Msa0171210:CDS
AGTAGAAAGCATGTGGACGC+CGG 0.647165 1_4:-55849016 None:intergenic
GTCATTGCGTCTATCAATGG+CGG 0.656657 1_4:+55844170 Msa0171210:CDS
GCATATGCCTAACAAACCAA+AGG 0.660215 1_4:+55847177 Msa0171210:CDS
CGAAAGCCTGAAAACGCAGA+GGG 0.662434 1_4:+55848639 Msa0171210:CDS
GTACCTGGCCAAGAAATTTG+GGG 0.663725 1_4:+55846602 Msa0171210:CDS
ATCACTTATTCAGTCCCAGT+AGG 0.671400 1_4:-55848765 None:intergenic
ACCCCACAATCCATCCACAA+TGG 0.682695 1_4:-55848937 None:intergenic
GGTAACACACAACACAACAA+TGG 0.682999 1_4:+55844032 Msa0171210:exon
AGCACTGGAGTATGATGTGG+CGG 0.683510 1_4:+55848889 Msa0171210:three_prime_UTR
AGTCCCAGTAGGATCTGACA+TGG 0.687661 1_4:-55848754 None:intergenic
GCACCATAATAATAGTAACA+TGG 0.689337 1_4:+55847365 Msa0171210:CDS
AGTGCAGTATGCAAGTGAGA+CGG 0.690366 1_4:-55847215 None:intergenic
CTAGAACAACCATTCCCTGA+CGG 0.703190 1_4:+55847118 Msa0171210:CDS
GCACGGGTAGCAGCACCGGG+TGG 0.705737 1_4:+55847343 Msa0171210:CDS
CTAGTGTGGTCAATGGAGAG+CGG 0.706985 1_4:+55847151 Msa0171210:CDS
ACAGAAACTCATCAAACGTG+CGG 0.727187 1_4:-55849078 None:intergenic
TAGTAATGATGGTATCTCTG+TGG 0.733690 1_4:-55844113 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTATAAAATCATAATTCT+AGG - chr1_4:55843947-55843966 None:intergenic 15.0%
!!! TTATTTTTTTCATTTTTTGC+TGG + chr1_4:55846449-55846468 Msa0171210:intron 15.0%
!! TGTAAAAAAATAGATGATAA+AGG - chr1_4:55846734-55846753 None:intergenic 15.0%
!!! AAACAATTTTTGTATGAAAT+AGG - chr1_4:55847305-55847324 None:intergenic 15.0%
!!! TTTTGAACAATTTCTTATAT+TGG + chr1_4:55847670-55847689 Msa0171210:intron 15.0%
!! TTCTCAATCTTCAATTATTT+AGG - chr1_4:55843829-55843848 None:intergenic 20.0%
!! TCAAATAATTCAATCAAATC+AGG - chr1_4:55844771-55844790 None:intergenic 20.0%
!!! AAACTATCTTTGAAAACTTA+TGG - chr1_4:55844842-55844861 None:intergenic 20.0%
!! ACATTAGTGTTTATAATGAT+AGG + chr1_4:55844913-55844932 Msa0171210:intron 20.0%
!!! AATCTTCATTTTTTCATCTA+AGG - chr1_4:55844984-55845003 None:intergenic 20.0%
!! AATCATTAATTTATCACGTT+TGG + chr1_4:55845007-55845026 Msa0171210:intron 20.0%
!! ATCATTAATTTATCACGTTT+GGG + chr1_4:55845008-55845027 Msa0171210:intron 20.0%
!! CAATAAACATATTTAACTCT+GGG - chr1_4:55845374-55845393 None:intergenic 20.0%
!!! TTTGCTGGTAAATTTTATTT+TGG + chr1_4:55846464-55846483 Msa0171210:intron 20.0%
!! ATATTAATTAACTACCTGAA+GGG - chr1_4:55847527-55847546 None:intergenic 20.0%
!! TATATTAATTAACTACCTGA+AGG - chr1_4:55847528-55847547 None:intergenic 20.0%
!! TGAACACTTATATTAGTATT+TGG + chr1_4:55847622-55847641 Msa0171210:intron 20.0%
!! TTTCCATATCAATAAGTTTA+CGG - chr1_4:55847741-55847760 None:intergenic 20.0%
!! TATTGATATGGAAAAACTTA+AGG + chr1_4:55847747-55847766 Msa0171210:intron 20.0%
!!! TATTGTTAGTATTTTGTTGA+GGG + chr1_4:55848156-55848175 Msa0171210:intron 20.0%
!! GGAGTATATAACATTAATTT+GGG - chr1_4:55848310-55848329 None:intergenic 20.0%
!! TGGAGTATATAACATTAATT+TGG - chr1_4:55848311-55848330 None:intergenic 20.0%
!!! TAAATTGATAATGATCTTGT+TGG + chr1_4:55848480-55848499 Msa0171210:intron 20.0%
!! TATCAAAATAAATGACATGT+AGG - chr1_4:55848690-55848709 None:intergenic 20.0%
!!! TTTAATATTTTTTGTAGCAC+TGG + chr1_4:55848874-55848893 Msa0171210:three_prime_UTR 20.0%
!!! AAAAGTTTTGAAATTCTATG+TGG + chr1_4:55849145-55849164 Msa0171210:three_prime_UTR 20.0%
!! TCAAAGAGTTTTCAATCATA+CGG - chr1_4:55844377-55844396 None:intergenic 25.0%
!! AAAAAAGAGAGCATATATGT+AGG + chr1_4:55844744-55844763 Msa0171210:intron 25.0%
!! AAAAAGAGAGCATATATGTA+GGG + chr1_4:55844745-55844764 Msa0171210:intron 25.0%
! ATTAAGATGTATATCCAAAC+AGG + chr1_4:55844957-55844976 Msa0171210:intron 25.0%
! TTAAGATGTATATCCAAACA+GGG + chr1_4:55844958-55844977 Msa0171210:intron 25.0%
! TCATTAATTTATCACGTTTG+GGG + chr1_4:55845009-55845028 Msa0171210:intron 25.0%
!!! TCTTTGGTTAGTTTTGTTAT+CGG + chr1_4:55845177-55845196 Msa0171210:intron 25.0%
! GTGTCTTTCATTAATCAATT+TGG + chr1_4:55845202-55845221 Msa0171210:intron 25.0%
! GTCTTATGTTAGTAATTTCA+TGG - chr1_4:55845229-55845248 None:intergenic 25.0%
!!! TTTTGGTCTTTAAATGTGTA+AGG - chr1_4:55845306-55845325 None:intergenic 25.0%
! CCAATAAACATATTTAACTC+TGG - chr1_4:55845375-55845394 None:intergenic 25.0%
! CCAGAGTTAAATATGTTTAT+TGG + chr1_4:55845372-55845391 Msa0171210:intron 25.0%
!!! ATTGGAGTAAATTGTCATTT+TGG + chr1_4:55845390-55845409 Msa0171210:intron 25.0%
!!! AATCATTTTAGTCCCTAAAT+GGG - chr1_4:55845551-55845570 None:intergenic 25.0%
!!! TAATCATTTTAGTCCCTAAA+TGG - chr1_4:55845552-55845571 None:intergenic 25.0%
! ATATTTAAACCGTGTAACTT+GGG - chr1_4:55845644-55845663 None:intergenic 25.0%
! TTACACGGTTTAAATATCTT+GGG + chr1_4:55845647-55845666 Msa0171210:intron 25.0%
!!! CTGGTAAATTTTATTTTGGT+TGG + chr1_4:55846468-55846487 Msa0171210:intron 25.0%
!!! AAATTTTATTTTGGTTGGAC+TGG + chr1_4:55846473-55846492 Msa0171210:intron 25.0%
! TATTATAATGAATCTCACCA+AGG + chr1_4:55846791-55846810 Msa0171210:intron 25.0%
! ATTATAATGAATCTCACCAA+GGG + chr1_4:55846792-55846811 Msa0171210:intron 25.0%
!! ATATGATACGTGTTTTCAAT+CGG - chr1_4:55846878-55846897 None:intergenic 25.0%
! CAAAAATTGTTTCAGTTTGT+TGG + chr1_4:55847313-55847332 Msa0171210:CDS 25.0%
! ACACCATGTTACTATTATTA+TGG - chr1_4:55847371-55847390 None:intergenic 25.0%
! TAACCGTAAACTTATTGATA+TGG + chr1_4:55847735-55847754 Msa0171210:intron 25.0%
!! GTATTGTTAGTATTTTGTTG+AGG + chr1_4:55848155-55848174 Msa0171210:intron 25.0%
! TCATATAAACCATTAACTGT+TGG - chr1_4:55848354-55848373 None:intergenic 25.0%
! ATTTCACACATATTCAGAAA+AGG - chr1_4:55848417-55848436 None:intergenic 25.0%
! TATCAATTTATGTACTCCTT+TGG - chr1_4:55848470-55848489 None:intergenic 25.0%
!! TCTAATTTGTGTTATAGCAT+TGG + chr1_4:55849199-55849218 Msa0171210:three_prime_UTR 25.0%
CTGAACATCAAATACATAGT+TGG - chr1_4:55843877-55843896 None:intergenic 30.0%
! AAACAAGGCATAATTTTTGC+TGG - chr1_4:55843980-55843999 None:intergenic 30.0%
CGCTATACAACAAAAAAACA+AGG - chr1_4:55843995-55844014 None:intergenic 30.0%
TGGTATATGGGAGAATATTT+GGG + chr1_4:55844278-55844297 Msa0171210:CDS 30.0%
GGACATAGTCAAATTCAAAA+CGG - chr1_4:55844533-55844552 None:intergenic 30.0%
AACCTATGAGTTAAATTGTC+AGG + chr1_4:55845041-55845060 Msa0171210:intron 30.0%
AACCTGACAATTTAACTCAT+AGG - chr1_4:55845046-55845065 None:intergenic 30.0%
ATGAGTTAAATTGTCAGGTT+TGG + chr1_4:55845046-55845065 Msa0171210:intron 30.0%
TGAGTCTTTGTTACTATAGT+CGG + chr1_4:55845081-55845100 Msa0171210:intron 30.0%
GCATCAAAATTACAAACCAA+AGG + chr1_4:55845453-55845472 Msa0171210:intron 30.0%
TATTTAAACCGTGTAACTTG+GGG - chr1_4:55845643-55845662 None:intergenic 30.0%
GATATTTAAACCGTGTAACT+TGG - chr1_4:55845645-55845664 None:intergenic 30.0%
GTTACACGGTTTAAATATCT+TGG + chr1_4:55845646-55845665 Msa0171210:intron 30.0%
TAAATCATCGTATTCAAGCT+GGG + chr1_4:55845707-55845726 Msa0171210:intron 30.0%
AGCTGAAAGGAAAGTTATAT+CGG + chr1_4:55845785-55845804 Msa0171210:intron 30.0%
!! TAGAAAAGTTGGTGGAAAAT+AGG + chr1_4:55845983-55846002 Msa0171210:intron 30.0%
TTGATCTACTCTTCTAACAA+CGG - chr1_4:55846049-55846068 None:intergenic 30.0%
TAGAAGAGTAGATCAAATAG+AGG + chr1_4:55846053-55846072 Msa0171210:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr1_4:55846108-55846127 None:intergenic 30.0%
CTTTCTAATGGTTTCTCTAA+TGG - chr1_4:55846118-55846137 None:intergenic 30.0%
CATTAGAGAAACCATTAGAA+AGG + chr1_4:55846116-55846135 Msa0171210:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr1_4:55846125-55846144 Msa0171210:intron 30.0%
! TTGGATCCAAATATGGTTTT+TGG + chr1_4:55846156-55846175 Msa0171210:intron 30.0%
GTGATTGAATATAACCACAT+AGG + chr1_4:55846286-55846305 Msa0171210:intron 30.0%
ATACATGCATCAATAACAAC+AGG - chr1_4:55846512-55846531 None:intergenic 30.0%
ATACAAGTTCTTAATACCCT+TGG - chr1_4:55846811-55846830 None:intergenic 30.0%
GAATAGAATCTACTCATATG+TGG + chr1_4:55846832-55846851 Msa0171210:intron 30.0%
TTGCATTGCATAAACAGTAA+AGG - chr1_4:55847063-55847082 None:intergenic 30.0%
GAGATTGATTACAACTTTAC+TGG - chr1_4:55847272-55847291 None:intergenic 30.0%
GCACCATAATAATAGTAACA+TGG + chr1_4:55847365-55847384 Msa0171210:CDS 30.0%
!! TAATAGTAACATGGTGTCAT+AGG + chr1_4:55847374-55847393 Msa0171210:CDS 30.0%
!! AATAGTAACATGGTGTCATA+GGG + chr1_4:55847375-55847394 Msa0171210:CDS 30.0%
! ATTCATTTTATCTTCCAGAG+TGG + chr1_4:55847461-55847480 Msa0171210:CDS 30.0%
TGCAACTATCTCATTTGAAT+TGG - chr1_4:55847783-55847802 None:intergenic 30.0%
TGTTTGATTGCTATCTATCT+AGG + chr1_4:55847869-55847888 Msa0171210:intron 30.0%
! TTTTCCTAAACAACAAATGC+TGG + chr1_4:55848133-55848152 Msa0171210:intron 30.0%
!! AATACCAGCATTTGTTGTTT+AGG - chr1_4:55848140-55848159 None:intergenic 30.0%
TAATGCAACACGGATATATA+AGG - chr1_4:55848249-55848268 None:intergenic 30.0%
ATCAAACATGTAATGCAACA+CGG - chr1_4:55848259-55848278 None:intergenic 30.0%
CCATTATCATAAATGCATAC+TGG - chr1_4:55848331-55848350 None:intergenic 30.0%
CCAGTATGCATTTATGATAA+TGG + chr1_4:55848328-55848347 Msa0171210:intron 30.0%
!!! TCATTTTTGTTATTGTGTGC+AGG + chr1_4:55848528-55848547 Msa0171210:intron 30.0%
GCAGGTCTAAAAACTATAAA+AGG + chr1_4:55848546-55848565 Msa0171210:intron 30.0%
GACTGAATAAGTGATATTGA+AGG + chr1_4:55848773-55848792 Msa0171210:three_prime_UTR 30.0%
GTTCTTGAACAAAACTCTAA+TGG + chr1_4:55848810-55848829 Msa0171210:three_prime_UTR 30.0%
! ACATTGAAGATGCTGATTAT+CGG - chr1_4:55848839-55848858 None:intergenic 30.0%
AAGAACATGTTATTGCTCAA+TGG - chr1_4:55848915-55848934 None:intergenic 30.0%
ATTGAGCAATAACATGTTCT+TGG + chr1_4:55848914-55848933 Msa0171210:three_prime_UTR 30.0%
TTAAGAACAAAGTGAGTGTT+TGG + chr1_4:55848974-55848993 Msa0171210:three_prime_UTR 30.0%
AACACGCTAAAAATTGAGTT+CGG + chr1_4:55849111-55849130 Msa0171210:three_prime_UTR 30.0%
! AAATTCTATGTGGCACTTTT+GGG + chr1_4:55849155-55849174 Msa0171210:three_prime_UTR 30.0%
AGATTCTTAACTATCTCTTG+TGG - chr1_4:55849182-55849201 None:intergenic 30.0%
TAGTAATGATGGTATCTCTG+TGG - chr1_4:55844116-55844135 None:intergenic 35.0%
TGGTACAGTAGTAGTAATGA+TGG - chr1_4:55844127-55844146 None:intergenic 35.0%
TTTCTTCTTCTACTGCTGAA+TGG - chr1_4:55844147-55844166 None:intergenic 35.0%
TTCAGCAGTAGAAGAAGAAA+AGG + chr1_4:55844147-55844166 Msa0171210:CDS 35.0%
TCAGCAGTAGAAGAAGAAAA+GGG + chr1_4:55844148-55844167 Msa0171210:CDS 35.0%
GAGAAGAAGAAACTTCAGTT+AGG + chr1_4:55844228-55844247 Msa0171210:CDS 35.0%
!! GAGTTTTATGATGAGTCTTC+TGG + chr1_4:55844258-55844277 Msa0171210:CDS 35.0%
ATGATGAGTCTTCTGGTATA+TGG + chr1_4:55844265-55844284 Msa0171210:CDS 35.0%
TGATGAGTCTTCTGGTATAT+GGG + chr1_4:55844266-55844285 Msa0171210:CDS 35.0%
CTGGTATATGGGAGAATATT+TGG + chr1_4:55844277-55844296 Msa0171210:CDS 35.0%
GGTATATGGGAGAATATTTG+GGG + chr1_4:55844279-55844298 Msa0171210:CDS 35.0%
GAAACAGAAACAGTAGAATC+AGG - chr1_4:55844333-55844352 None:intergenic 35.0%
TGTCCAAATCAAGTTCACTA+CGG + chr1_4:55844548-55844567 Msa0171210:intron 35.0%
TTAATGAGTTCCACCAGTAA+TGG + chr1_4:55844585-55844604 Msa0171210:intron 35.0%
CTATCTGAACAATCCATTAC+TGG - chr1_4:55844601-55844620 None:intergenic 35.0%
TCGATTGGTGAAACAATTCT+TGG + chr1_4:55844629-55844648 Msa0171210:intron 35.0%
GTCTTGTATGTGTCTTTCTT+TGG + chr1_4:55845161-55845180 Msa0171210:intron 35.0%
!!! CTCTGCTTCATAGCTTTTTT+TGG - chr1_4:55845323-55845342 None:intergenic 35.0%
TATCATAACCCCAAGTTACA+CGG + chr1_4:55845632-55845651 Msa0171210:intron 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG - chr1_4:55845674-55845693 None:intergenic 35.0%
GTAAATCATCGTATTCAAGC+TGG + chr1_4:55845706-55845725 Msa0171210:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + chr1_4:55845772-55845791 Msa0171210:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr1_4:55845781-55845800 None:intergenic 35.0%
AGACTAGATAGGATAGGATT+AGG + chr1_4:55845920-55845939 Msa0171210:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr1_4:55845972-55845991 Msa0171210:intron 35.0%
ACCTATAGTAGAAAAGTTGG+TGG + chr1_4:55845975-55845994 Msa0171210:intron 35.0%
! TCCACCAACTTTTCTACTAT+AGG - chr1_4:55845979-55845998 None:intergenic 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_4:55845997-55846016 Msa0171210:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr1_4:55846130-55846149 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_4:55846149-55846168 Msa0171210:intron 35.0%
ATGACGCCAAAAACCATATT+TGG - chr1_4:55846165-55846184 None:intergenic 35.0%
CATCAGATTGAAGATGTAGT+TGG - chr1_4:55846328-55846347 None:intergenic 35.0%
ACATCTTCAATCTGATGTCT+TGG + chr1_4:55846331-55846350 Msa0171210:intron 35.0%
!! CTTGGTGCTACATAGAAAAA+AGG + chr1_4:55846349-55846368 Msa0171210:intron 35.0%
! CAAAGAGTGTAGTTGATGTT+GGG + chr1_4:55846556-55846575 Msa0171210:CDS 35.0%
ATCAATGTCAGTATCGTGTT+TGG + chr1_4:55846987-55847006 Msa0171210:intron 35.0%
ATGCAATGCAATGCAATTGT+AGG + chr1_4:55847072-55847091 Msa0171210:intron 35.0%
!! ATTAGGACCTTTGGTTTGTT+AGG - chr1_4:55847187-55847206 None:intergenic 35.0%
GCAAAAGAAATTAGGACCTT+TGG - chr1_4:55847196-55847215 None:intergenic 35.0%
TGTTGTAGGGATTCTTCATT+CGG - chr1_4:55847409-55847428 None:intergenic 35.0%
ATGAAGAATCCCTACAACAA+TGG + chr1_4:55847410-55847429 Msa0171210:CDS 35.0%
TGAAGAATCCCTACAACAAT+GGG + chr1_4:55847411-55847430 Msa0171210:CDS 35.0%
TCACTATGTGCTATCAAGTT+AGG + chr1_4:55847835-55847854 Msa0171210:intron 35.0%
TGATACGTTCAGCATTAACA+TGG + chr1_4:55847943-55847962 Msa0171210:CDS 35.0%
! AGACTAGTGATTTGAGACAA+GGG - chr1_4:55848034-55848053 None:intergenic 35.0%
! AAGACTAGTGATTTGAGACA+AGG - chr1_4:55848035-55848054 None:intergenic 35.0%
! TGTTAGTATTTTGTTGAGGG+TGG + chr1_4:55848159-55848178 Msa0171210:intron 35.0%
AGGAATGATAAGGAGATTGA+GGG - chr1_4:55848193-55848212 None:intergenic 35.0%
AGTTTAGGAGAGGAATGATA+AGG - chr1_4:55848203-55848222 None:intergenic 35.0%
!! TGATAATGGCCAACAGTTAA+TGG + chr1_4:55848342-55848361 Msa0171210:intron 35.0%
CTGAATCCTTCTATCATCAA+TGG - chr1_4:55848585-55848604 None:intergenic 35.0%
! CATTGATGATAGAAGGATTC+AGG + chr1_4:55848583-55848602 Msa0171210:CDS 35.0%
ATGATAGAAGGATTCAGGAA+GGG + chr1_4:55848588-55848607 Msa0171210:CDS 35.0%
! GAAATTCTATGTGGCACTTT+TGG + chr1_4:55849154-55849173 Msa0171210:three_prime_UTR 35.0%
TCTAGGTACACACGAAACTA+CGG - chr1_4:55843930-55843949 None:intergenic 40.0%
TTGTGTGTTACCACTTGCAA+CGG - chr1_4:55844024-55844043 None:intergenic 40.0%
GGTAACACACAACACAACAA+TGG + chr1_4:55844032-55844051 Msa0171210:exon 40.0%
! ACTTTTGCTTCTCTTTCGAC+TGG + chr1_4:55844396-55844415 Msa0171210:CDS 40.0%
TCTGAACAATCCATTACTGG+TGG - chr1_4:55844598-55844617 None:intergenic 40.0%
CAGATAGACTTGAGTTCGAT+TGG + chr1_4:55844614-55844633 Msa0171210:intron 40.0%
GCTAGACAGTAAGAAAAGTC+TGG - chr1_4:55844655-55844674 None:intergenic 40.0%
TTAGCAGAACCCATTATCGA+AGG + chr1_4:55844686-55844705 Msa0171210:intron 40.0%
TAGCAGAACCCATTATCGAA+GGG + chr1_4:55844687-55844706 Msa0171210:intron 40.0%
TGCGTTAACCCTTCGATAAT+GGG - chr1_4:55844698-55844717 None:intergenic 40.0%
TTGCGTTAACCCTTCGATAA+TGG - chr1_4:55844699-55844718 None:intergenic 40.0%
!! TTTTCATCTAAGGCCCTGTT+TGG - chr1_4:55844974-55844993 None:intergenic 40.0%
AGTCGCTGTCATTATAGTCT+CGG + chr1_4:55845427-55845446 Msa0171210:intron 40.0%
TGACATTTCCTCACCCATTT+AGG + chr1_4:55845535-55845554 Msa0171210:intron 40.0%
GACATTTCCTCACCCATTTA+GGG + chr1_4:55845536-55845555 Msa0171210:intron 40.0%
! TTTTAGTCCCTAAATGGGTG+AGG - chr1_4:55845546-55845565 None:intergenic 40.0%
AAAGCTATGAAGCAGAGACA+TGG + chr1_4:55845575-55845594 Msa0171210:intron 40.0%
GGGTCCATAGTACAAAATGA+CGG + chr1_4:55845667-55845686 Msa0171210:intron 40.0%
ATCGGCAATGTTGTATGGTA+CGG + chr1_4:55845819-55845838 Msa0171210:intron 40.0%
GATGAGTGGTAAGACTAGAT+AGG + chr1_4:55845909-55845928 Msa0171210:intron 40.0%
GTGGTAAGACTAGATAGGAT+AGG + chr1_4:55845914-55845933 Msa0171210:intron 40.0%
TGACACCATTAGAGAAAGAG+TGG + chr1_4:55845945-55845964 Msa0171210:intron 40.0%
GACACCATTAGAGAAAGAGT+GGG + chr1_4:55845946-55845965 Msa0171210:intron 40.0%
ACACCATTAGAGAAAGAGTG+GGG + chr1_4:55845947-55845966 Msa0171210:intron 40.0%
TGGTGGAAAATAGGCTTAGA+TGG + chr1_4:55845992-55846011 Msa0171210:intron 40.0%
AGATCAAATAGAGGAGAGTC+AGG + chr1_4:55846062-55846081 Msa0171210:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_4:55846078-55846097 Msa0171210:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr1_4:55846137-55846156 Msa0171210:intron 40.0%
TTACACGACATCAACCTATG+TGG - chr1_4:55846303-55846322 None:intergenic 40.0%
GCTCAGATGATCCATCAAAA+TGG + chr1_4:55846532-55846551 Msa0171210:intron 40.0%
!! ACACTCTTTGGCCATTTTGA+TGG - chr1_4:55846546-55846565 None:intergenic 40.0%
CCAACATCAACTACACTCTT+TGG - chr1_4:55846558-55846577 None:intergenic 40.0%
! CCAAAGAGTGTAGTTGATGT+TGG + chr1_4:55846555-55846574 Msa0171210:CDS 40.0%
ACAACTTGCCCCAAATTTCT+TGG - chr1_4:55846613-55846632 None:intergenic 40.0%
! AAATTTGGGGCAAGTTGTGT+AGG + chr1_4:55846615-55846634 Msa0171210:CDS 40.0%
TAGCTCTTTCAGCTTGAACA+GGG - chr1_4:55846653-55846672 None:intergenic 40.0%
! TTAGCTCTTTCAGCTTGAAC+AGG - chr1_4:55846654-55846673 None:intergenic 40.0%
!! TGCTCAAGGATTAGCTGATA+AGG + chr1_4:55846686-55846705 Msa0171210:CDS 40.0%
TTGACCACACTAGATCAAAC+TGG - chr1_4:55847144-55847163 None:intergenic 40.0%
GTTTGATCTAGTGTGGTCAA+TGG + chr1_4:55847144-55847163 Msa0171210:CDS 40.0%
GCATATGCCTAACAAACCAA+AGG + chr1_4:55847177-55847196 Msa0171210:CDS 40.0%
GTGAGACGGCAAAAGAAATT+AGG - chr1_4:55847204-55847223 None:intergenic 40.0%
!! AGTTTGTTGGTGAGTTAGCA+CGG + chr1_4:55847326-55847345 Msa0171210:CDS 40.0%
!! ACTATTATTATGGTGCCACC+CGG - chr1_4:55847361-55847380 None:intergenic 40.0%
TTGTAGGGATTCTTCATTCG+GGG - chr1_4:55847407-55847426 None:intergenic 40.0%
GTTGTAGGGATTCTTCATTC+GGG - chr1_4:55847408-55847427 None:intergenic 40.0%
ATCCTTCTCCCATTGTTGTA+GGG - chr1_4:55847422-55847441 None:intergenic 40.0%
ATTAACTACCTGAAGGGACA+TGG - chr1_4:55847521-55847540 None:intergenic 40.0%
AGGACATCAAATCAGCAGAT+TGG + chr1_4:55847889-55847908 Msa0171210:intron 40.0%
ACGTTCAGCATTAACATGGA+AGG + chr1_4:55847947-55847966 Msa0171210:CDS 40.0%
CGTTCAGCATTAACATGGAA+GGG + chr1_4:55847948-55847967 Msa0171210:CDS 40.0%
ACGTGACACTCAATATAGGA+CGG - chr1_4:55848070-55848089 None:intergenic 40.0%
GCTAACGTGACACTCAATAT+AGG - chr1_4:55848074-55848093 None:intergenic 40.0%
TTGAGTGTCACGTTAGCAAA+AGG + chr1_4:55848077-55848096 Msa0171210:intron 40.0%
GAGGAATGATAAGGAGATTG+AGG - chr1_4:55848194-55848213 None:intergenic 40.0%
!! ATAAGGTTGGCTTGGTAGTT+GGG - chr1_4:55848232-55848251 None:intergenic 40.0%
!! TATAAGGTTGGCTTGGTAGT+TGG - chr1_4:55848233-55848252 None:intergenic 40.0%
! ACGGATATATAAGGTTGGCT+TGG - chr1_4:55848240-55848259 None:intergenic 40.0%
GCAACACGGATATATAAGGT+TGG - chr1_4:55848245-55848264 None:intergenic 40.0%
! GCTATGCCATTGATGATAGA+AGG + chr1_4:55848576-55848595 Msa0171210:CDS 40.0%
GATGATAGAAGGATTCAGGA+AGG + chr1_4:55848587-55848606 Msa0171210:CDS 40.0%
AGGCTTTCGACATGTGATAA+TGG - chr1_4:55848628-55848647 None:intergenic 40.0%
ATCACTTATTCAGTCCCAGT+AGG - chr1_4:55848768-55848787 None:intergenic 40.0%
TAACATGTTCTTGGCCATTG+TGG + chr1_4:55848923-55848942 Msa0171210:three_prime_UTR 40.0%
! CTTTCACAGTAGAAAGCATG+TGG - chr1_4:55849026-55849045 None:intergenic 40.0%
ACAGAAACTCATCAAACGTG+CGG - chr1_4:55849081-55849100 None:intergenic 40.0%
AGGGTCATTGCGTCTATCAA+TGG + chr1_4:55844167-55844186 Msa0171210:CDS 45.0%
GTCATTGCGTCTATCAATGG+CGG + chr1_4:55844170-55844189 Msa0171210:CDS 45.0%
! GAAAGAAGCGATGGTGGTAA+TGG + chr1_4:55844197-55844216 Msa0171210:CDS 45.0%
TGGGGTGATCATATGCATCA+TGG + chr1_4:55844297-55844316 Msa0171210:CDS 45.0%
CAGCCGTAGTGAACTTGATT+TGG - chr1_4:55844554-55844573 None:intergenic 45.0%
CAAATCAAGTTCACTACGGC+TGG + chr1_4:55844552-55844571 Msa0171210:intron 45.0%
GGTTCTGCTAATCCAGAGTT+CGG - chr1_4:55844677-55844696 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG + chr1_4:55845710-55845729 Msa0171210:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr1_4:55845719-55845738 Msa0171210:intron 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + chr1_4:55845733-55845752 Msa0171210:intron 45.0%
CTTATCGCACAAAACACCTG+AGG - chr1_4:55845752-55845771 None:intergenic 45.0%
ATATCGGACAGCAGTCAGAT+CGG + chr1_4:55845801-55845820 Msa0171210:intron 45.0%
GTCAGATCGGCAATGTTGTA+TGG + chr1_4:55845814-55845833 Msa0171210:intron 45.0%
CACTTACTTTCCTCTCGTGT+TGG - chr1_4:55845864-55845883 None:intergenic 45.0%
CGAGAGGAAAGTAAGTGTAG+CGG + chr1_4:55845867-55845886 Msa0171210:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + chr1_4:55845875-55845894 Msa0171210:intron 45.0%
AGGATGTTGTGCTAGATGAG+TGG + chr1_4:55845895-55845914 Msa0171210:intron 45.0%
CACCATTAGAGAAAGAGTGG+GGG + chr1_4:55845948-55845967 Msa0171210:intron 45.0%
TACCCCCACTCTTTCTCTAA+TGG - chr1_4:55845953-55845972 None:intergenic 45.0%
CTTCTAACAACGGCATCTAC+AGG - chr1_4:55846039-55846058 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr1_4:55846072-55846091 Msa0171210:intron 45.0%
! AGTGTAGTTGATGTTGGGTG+TGG + chr1_4:55846561-55846580 Msa0171210:CDS 45.0%
TTGATGTTGGGTGTGGCATA+GGG + chr1_4:55846568-55846587 Msa0171210:CDS 45.0%
AGGTACCTGGCCAAGAAATT+TGG + chr1_4:55846600-55846619 Msa0171210:CDS 45.0%
GGTACCTGGCCAAGAAATTT+GGG + chr1_4:55846601-55846620 Msa0171210:CDS 45.0%
GTACCTGGCCAAGAAATTTG+GGG + chr1_4:55846602-55846621 Msa0171210:CDS 45.0%
AGCTGAAAGAGCTAATGCTC+TGG + chr1_4:55846659-55846678 Msa0171210:CDS 45.0%
! TAGAGCGTCAGCAACTTGAA+AGG - chr1_4:55847101-55847120 None:intergenic 45.0%
CTAGAACAACCATTCCCTGA+CGG + chr1_4:55847118-55847137 Msa0171210:CDS 45.0%
AGTGCAGTATGCAAGTGAGA+CGG - chr1_4:55847218-55847237 None:intergenic 45.0%
! GTTTGTTGGTGAGTTAGCAC+GGG + chr1_4:55847327-55847346 Msa0171210:CDS 45.0%
ATCCCTACAACAATGGGAGA+AGG + chr1_4:55847417-55847436 Msa0171210:CDS 45.0%
GATCCTTCTCCCATTGTTGT+AGG - chr1_4:55847423-55847442 None:intergenic 45.0%
ACTTGAAACCATGTCCCTTC+AGG + chr1_4:55847510-55847529 Msa0171210:CDS 45.0%
! CTCCCTTTGTTGCTCCATTT+TGG + chr1_4:55847913-55847932 Msa0171210:CDS 45.0%
GGCCAAAATGGAGCAACAAA+GGG - chr1_4:55847918-55847937 None:intergenic 45.0%
TGGCCAAAATGGAGCAACAA+AGG - chr1_4:55847919-55847938 None:intergenic 45.0%
AATGCTGAACGTATCACTGC+TGG - chr1_4:55847939-55847958 None:intergenic 45.0%
TTCACCTCAATCTTGCGAAG+TGG + chr1_4:55847972-55847991 Msa0171210:CDS 45.0%
CTTACCACTTCGCAAGATTG+AGG - chr1_4:55847979-55847998 None:intergenic 45.0%
! TGTAGCACTGGAGTATGATG+TGG + chr1_4:55848886-55848905 Msa0171210:three_prime_UTR 45.0%
ATGTTCTTGGCCATTGTGGA+TGG + chr1_4:55848927-55848946 Msa0171210:three_prime_UTR 45.0%
!!! TCATTATTTAAAATTATTAT+TGG + chr1_4:55846955-55846974 Msa0171210:intron 5.0%
! ATGGTATCTCTGTGGTGCTG+AGG - chr1_4:55844108-55844127 None:intergenic 50.0%
ATTGCGTCTATCAATGGCGG+CGG + chr1_4:55844173-55844192 Msa0171210:CDS 50.0%
CTTACTGTCTAGCCGAACTC+TGG + chr1_4:55844662-55844681 Msa0171210:intron 50.0%
TGAGTCTTCGAGTGTGCCTT+TGG - chr1_4:55845472-55845491 None:intergenic 50.0%
TCCAACTTTCACCTCGTCGT+GGG - chr1_4:55845607-55845626 None:intergenic 50.0%
TGTTGTATGGTACGGAGTGC+TGG + chr1_4:55845827-55845846 Msa0171210:intron 50.0%
! GTTGTATGGTACGGAGTGCT+GGG + chr1_4:55845828-55845847 Msa0171210:intron 50.0%
AAGCCTCATCCCACTAAGTG+GGG - chr1_4:55846205-55846224 None:intergenic 50.0%
CAAGCCTCATCCCACTAAGT+GGG - chr1_4:55846206-55846225 None:intergenic 50.0%
GTTGATGTTGGGTGTGGCAT+AGG + chr1_4:55846567-55846586 Msa0171210:CDS 50.0%
TGATGTTGGGTGTGGCATAG+GGG + chr1_4:55846569-55846588 Msa0171210:CDS 50.0%
TTGCCCCAAATTTCTTGGCC+AGG - chr1_4:55846608-55846627 None:intergenic 50.0%
AATGCTCTGGCTGTTGCTCA+AGG + chr1_4:55846672-55846691 Msa0171210:CDS 50.0%
GTCTGACTGCAACGTGATAC+TGG + chr1_4:55846907-55846926 Msa0171210:intron 50.0%
TATGTCAGTGCTTCATCGCG+TGG + chr1_4:55847022-55847041 Msa0171210:intron 50.0%
CTAGATCAAACTGGCCGTCA+GGG - chr1_4:55847135-55847154 None:intergenic 50.0%
ACTAGATCAAACTGGCCGTC+AGG - chr1_4:55847136-55847155 None:intergenic 50.0%
ACGGCCAGTTTGATCTAGTG+TGG + chr1_4:55847137-55847156 Msa0171210:CDS 50.0%
CTAGTGTGGTCAATGGAGAG+CGG + chr1_4:55847151-55847170 Msa0171210:CDS 50.0%
CGTATCACTGCTGGCCAAAA+TGG - chr1_4:55847930-55847949 None:intergenic 50.0%
GACGCTCGATATGTGACCAA+AGG + chr1_4:55848451-55848470 Msa0171210:intron 50.0%
TCGAAAGCCTGAAAACGCAG+AGG + chr1_4:55848638-55848657 Msa0171210:CDS 50.0%
CGAAAGCCTGAAAACGCAGA+GGG + chr1_4:55848639-55848658 Msa0171210:CDS 50.0%
! CATTGACCCTCTGCGTTTTC+AGG - chr1_4:55848648-55848667 None:intergenic 50.0%
TCTGCCATGTCAGATCCTAC+TGG + chr1_4:55848750-55848769 Msa0171210:three_prime_UTR 50.0%
CTGCCATGTCAGATCCTACT+GGG + chr1_4:55848751-55848770 Msa0171210:three_prime_UTR 50.0%
AGTCCCAGTAGGATCTGACA+TGG - chr1_4:55848757-55848776 None:intergenic 50.0%
! AGCACTGGAGTATGATGTGG+CGG + chr1_4:55848889-55848908 Msa0171210:three_prime_UTR 50.0%
!! TGGCCATTGTGGATGGATTG+TGG + chr1_4:55848934-55848953 Msa0171210:three_prime_UTR 50.0%
!! GGCCATTGTGGATGGATTGT+GGG + chr1_4:55848935-55848954 Msa0171210:three_prime_UTR 50.0%
!! GCCATTGTGGATGGATTGTG+GGG + chr1_4:55848936-55848955 Msa0171210:three_prime_UTR 50.0%
ACCCCACAATCCATCCACAA+TGG - chr1_4:55848940-55848959 None:intergenic 50.0%
TTCCACATCCATTCACCGAC+CGG + chr1_4:55848997-55849016 Msa0171210:three_prime_UTR 50.0%
! AGTAGAAAGCATGTGGACGC+CGG - chr1_4:55849019-55849038 None:intergenic 50.0%
TCACTACGGCTGGACTCAAG+TGG + chr1_4:55844562-55844581 Msa0171210:intron 55.0%
CATGGACATTTCCCACGACG+AGG + chr1_4:55845593-55845612 Msa0171210:intron 55.0%
TCCCACGACGAGGTGAAAGT+TGG + chr1_4:55845603-55845622 Msa0171210:intron 55.0%
CTCCAACTTTCACCTCGTCG+TGG - chr1_4:55845608-55845627 None:intergenic 55.0%
CGGTTAAGAGCCAACACGAG+AGG + chr1_4:55845851-55845870 Msa0171210:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_4:55846193-55846212 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_4:55846192-55846211 Msa0171210:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_4:55846193-55846212 Msa0171210:intron 55.0%
CTCATCCCACTAAGTGGGGT+CGG - chr1_4:55846201-55846220 None:intergenic 55.0%
CCAAGCCTCATCCCACTAAG+TGG - chr1_4:55846207-55846226 None:intergenic 55.0%
CCACTTAGTGGGATGAGGCT+TGG + chr1_4:55846204-55846223 Msa0171210:intron 55.0%
GATGTTGGGTGTGGCATAGG+GGG + chr1_4:55846570-55846589 Msa0171210:CDS 55.0%
GTGGCATAGGGGGAAGTTCA+AGG + chr1_4:55846580-55846599 Msa0171210:CDS 55.0%
! AGGGGGAAGTTCAAGGTACC+TGG + chr1_4:55846587-55846606 Msa0171210:CDS 55.0%
!! CGGAAGTGTCAGTGCTGCAT+AGG - chr1_4:55846858-55846877 None:intergenic 55.0%
TCAAACTGGCCGTCAGGGAA+TGG - chr1_4:55847130-55847149 None:intergenic 55.0%
TCAGCAGTTGAGCACCACTC+TGG - chr1_4:55847478-55847497 None:intergenic 55.0%
GTAGTTGGGTGGGGGAGTTT+AGG - chr1_4:55848218-55848237 None:intergenic 55.0%
!! TTGGCTTGGTAGTTGGGTGG+GGG - chr1_4:55848226-55848245 None:intergenic 55.0%
!! GTTGGCTTGGTAGTTGGGTG+GGG - chr1_4:55848227-55848246 None:intergenic 55.0%
!! GGTTGGCTTGGTAGTTGGGT+GGG - chr1_4:55848228-55848247 None:intergenic 55.0%
!! AGGTTGGCTTGGTAGTTGGG+TGG - chr1_4:55848229-55848248 None:intergenic 55.0%
AGCGCGTGTACCGTTGCAAG+TGG + chr1_4:55844011-55844030 Msa0171210:five_prime_UTR 60.0%
GGCGGTGAAAGAAGCGATGG+TGG + chr1_4:55844191-55844210 Msa0171210:CDS 60.0%
!! GTATGGTACGGAGTGCTGGG+CGG + chr1_4:55845831-55845850 Msa0171210:intron 60.0%
CGACCCCACTTAGTGGGATG+AGG + chr1_4:55846199-55846218 Msa0171210:intron 60.0%
GTTAGCACGGGTAGCAGCAC+CGG + chr1_4:55847339-55847358 Msa0171210:CDS 60.0%
TTAGCACGGGTAGCAGCACC+GGG + chr1_4:55847340-55847359 Msa0171210:CDS 60.0%
TGGGTGGGGGAGTTTAGGAG+AGG - chr1_4:55848213-55848232 None:intergenic 60.0%
! GAAAGCATGTGGACGCCGGT+CGG - chr1_4:55849015-55849034 None:intergenic 60.0%
GGCGGCGGTGAAAGAAGCGA+TGG + chr1_4:55844188-55844207 Msa0171210:CDS 65.0%
CGCCGGTCGGTGAATGGATG+TGG - chr1_4:55849002-55849021 None:intergenic 65.0%
TGTGGACGCCGGTCGGTGAA+TGG - chr1_4:55849008-55849027 None:intergenic 65.0%
! GCACGGGTAGCAGCACCGGG+TGG + chr1_4:55847343-55847362 Msa0171210:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55843810 55849243 55843810 ID=Msa0171210;Name=Msa0171210
chr1_4 mRNA 55843810 55849243 55843810 ID=Msa0171210-mRNA-1;Parent=Msa0171210;Name=Msa0171210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=241|1|0.8|1|1|1|5|575|398
chr1_4 exon 55843810 55844417 55843810 ID=Msa0171210-mRNA-1:exon:16728;Parent=Msa0171210-mRNA-1
chr1_4 exon 55846538 55846707 55846538 ID=Msa0171210-mRNA-1:exon:16729;Parent=Msa0171210-mRNA-1
chr1_4 exon 55847094 55847531 55847094 ID=Msa0171210-mRNA-1:exon:16730;Parent=Msa0171210-mRNA-1
chr1_4 exon 55847891 55847993 55847891 ID=Msa0171210-mRNA-1:exon:16731;Parent=Msa0171210-mRNA-1
chr1_4 exon 55848550 55849243 55848550 ID=Msa0171210-mRNA-1:exon:16732;Parent=Msa0171210-mRNA-1
chr1_4 five_prime_UTR 55843810 55844050 55843810 ID=Msa0171210-mRNA-1:five_prime_utr;Parent=Msa0171210-mRNA-1
chr1_4 CDS 55844051 55844417 55844051 ID=Msa0171210-mRNA-1:cds;Parent=Msa0171210-mRNA-1
chr1_4 CDS 55846538 55846707 55846538 ID=Msa0171210-mRNA-1:cds;Parent=Msa0171210-mRNA-1
chr1_4 CDS 55847094 55847531 55847094 ID=Msa0171210-mRNA-1:cds;Parent=Msa0171210-mRNA-1
chr1_4 CDS 55847891 55847993 55847891 ID=Msa0171210-mRNA-1:cds;Parent=Msa0171210-mRNA-1
chr1_4 CDS 55848550 55848668 55848550 ID=Msa0171210-mRNA-1:cds;Parent=Msa0171210-mRNA-1
chr1_4 three_prime_UTR 55848669 55849243 55848669 ID=Msa0171210-mRNA-1:three_prime_utr;Parent=Msa0171210-mRNA-1
Gene Sequence

>Msa0171210

ATGGTGACGACAGCGAGAATCTCTTCTTCATTATTACACTGCACGCACACATTTCCTCAGCACCACAGAGATACCATCATTACTACTACTGTACCATTCAGCAGTAGAAGAAGAAAAGGGTCATTGCGTCTATCAATGGCGGCGGTGAAAGAAGCGATGGTGGTAATGGAAGAAGAAGAGAAGAAGAAACTTCAGTTAGGTATTGCTGAGTTTTATGATGAGTCTTCTGGTATATGGGAGAATATTTGGGGTGATCATATGCATCATGGTTTTTATGATCCTGATTCTACTGTTTCTGTTTCTGATCATCGTGCTGCTCAGATCCGTATGATTGAAAACTCTTTGACTTTTGCTTCTCTTTCGACTGATGATCCATCAAAATGGCCAAAGAGTGTAGTTGATGTTGGGTGTGGCATAGGGGGAAGTTCAAGGTACCTGGCCAAGAAATTTGGGGCAAGTTGTGTAGGCATCACTCTCAGCCCTGTTCAAGCTGAAAGAGCTAATGCTCTGGCTGTTGCTCAAGGATTAGCTGATAAGGTGTCCTTTCAAGTTGCTGACGCTCTAGAACAACCATTCCCTGACGGCCAGTTTGATCTAGTGTGGTCAATGGAGAGCGGAGAGCATATGCCTAACAAACCAAAGGTCCTAATTTCTTTTGCCGTCTCACTTGCATACTGCACTTCACTTTCTTTGATATTTTCTGTTCTTTATGCCAGTAAAGTTGTAATCAATCTCATTTCAGTTTCCTATTTCATACAAAAATTGTTTCAGTTTGTTGGTGAGTTAGCACGGGTAGCAGCACCGGGTGGCACCATAATAATAGTAACATGGTGTCATAGGGATCTTGCCCCGAATGAAGAATCCCTACAACAATGGGAGAAGGATCTCTTGAAGAAGATATGTGATTCATTTTATCTTCCAGAGTGGTGCTCAACTGCTGATTATGTCAAATTACTTGAAACCATGTCCCTTCAGGACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGTTCAGCATTAACATGGAAGGGTTTCACCTCAATCTTGCGAAGTGGTCTAAAAACTATAAAAGGAGCTTTAGCTATGCCATTGATGATAGAAGGATTCAGGAAGGGTGTGATTAAGTTTGCCATTATCACATGTCGAAAGCCTGAAAACGCAGAGGGTCAATGA
Protein sequence

>Msa0171210

MVTTARISSSLLHCTHTFPQHHRDTIITTTVPFSSRRRKGSLRLSMAAVKEAMVVMEEEEKKKLQLGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIENSLTFASLSTDDPSKWPKSVVDVGCGIGGSSRYLAKKFGASCVGITLSPVQAERANALAVAQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPNKPKVLISFAVSLAYCTSLSLIFSVLYASKVVINLISVSYFIQKLFQFVGELARVAAPGGTIIIVTWCHRDLAPNEESLQQWEKDLLKKICDSFYLPEWCSTADYVKLLETMSLQDIKSADWSPFVAPFWPAVIRSALTWKGFTSILRSGLKTIKGALAMPLMIEGFRKGVIKFAIITCRKPENAEGQ*