AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0387740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387740 MtrunA17_Chr3g0120791 97.599 708 17 0 1 708 1 708 0.0 1422
Msa0387740 MtrunA17_Chr3g0129101 46.281 605 284 9 138 708 143 740 0.0 538
Msa0387740 MtrunA17_Chr8g0382921 43.964 671 325 11 72 708 78 731 0.0 538
Msa0387740 MtrunA17_Chr3g0136721 37.692 390 226 4 198 575 132 516 7.81e-79 266
Msa0387740 MtrunA17_Chr4g0012061 35.128 390 240 5 197 580 148 530 1.16e-69 241
Msa0387740 MtrunA17_Chr6g0465161 35.904 376 228 4 201 575 129 492 1.22e-67 236
Msa0387740 MtrunA17_Chr7g0230671 30.196 510 333 8 73 580 30 518 7.99e-67 233
Msa0387740 MtrunA17_Chr1g0169361 33.638 437 264 8 150 580 142 558 6.97e-64 226
Msa0387740 MtrunA17_Chr1g0148121 34.109 387 241 5 201 580 131 510 5.90e-59 211
Msa0387740 MtrunA17_Chr1g0199921 29.481 424 283 4 204 614 203 623 1.10e-50 189
Msa0387740 MtrunA17_Chr1g0147481 26.503 449 285 9 168 580 86 525 2.27e-43 168
Msa0387740 MtrunA17_Chr8g0360981 31.003 329 191 8 198 497 203 524 1.82e-38 151
Msa0387740 MtrunA17_Chr5g0433911 30.072 276 178 5 215 483 77 344 1.19e-37 147
Msa0387740 MtrunA17_Chr3g0113361 27.073 410 261 8 185 563 69 471 2.54e-37 147
Msa0387740 MtrunA17_Chr4g0057941 26.782 463 265 14 154 580 26 450 1.51e-36 143
Msa0387740 MtrunA17_Chr4g0048521 29.909 331 200 8 203 506 217 542 7.66e-35 140
Msa0387740 MtrunA17_Chr5g0428451 25.126 398 263 6 203 570 127 519 9.91e-33 133
Msa0387740 MtrunA17_Chr2g0281061 29.206 315 194 7 203 493 214 523 3.18e-32 132
Msa0387740 MtrunA17_Chr1g0193751 28.947 304 192 8 199 492 225 514 4.30e-22 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387740 AT3G07700.1 74.370 714 158 9 1 708 1 695 0.0 1079
Msa0387740 AT3G07700.2 74.370 714 158 9 1 708 1 695 0.0 1079
Msa0387740 AT3G07700.4 74.370 714 158 9 1 708 1 695 0.0 1079
Msa0387740 AT3G07700.3 71.467 743 158 10 1 708 1 724 0.0 1064
Msa0387740 AT5G64940.1 45.634 607 287 8 138 708 158 757 4.58e-179 530
Msa0387740 AT5G64940.2 45.634 607 287 8 138 708 158 757 4.58e-179 530
Msa0387740 AT5G24970.3 35.088 399 231 4 198 575 134 525 6.21e-73 251
Msa0387740 AT5G24970.2 35.088 399 231 4 198 575 173 564 2.20e-72 250
Msa0387740 AT1G79600.1 34.815 405 251 5 186 580 124 525 6.11e-70 242
Msa0387740 AT1G71810.1 36.170 376 227 4 201 575 120 483 2.17e-69 240
Msa0387740 AT5G24970.1 34.336 399 231 5 198 575 134 522 1.26e-68 239
Msa0387740 AT3G24190.1 34.430 395 244 6 189 580 184 566 2.00e-61 220
Msa0387740 AT4G31390.1 33.333 387 244 5 201 580 167 546 6.41e-57 206
Msa0387740 AT2G39190.2 30.380 395 252 4 204 580 202 591 9.08e-51 190
Msa0387740 AT4G31390.3 32.768 354 224 5 234 580 1 347 1.69e-48 178
Msa0387740 AT4G31390.2 31.266 387 227 6 201 580 167 521 4.12e-47 177
Msa0387740 AT4G24810.2 27.766 461 302 10 146 589 15 461 2.88e-42 160
Msa0387740 AT5G50330.1 28.761 452 286 10 152 580 14 452 7.83e-42 159
Msa0387740 AT5G24810.1 27.706 462 280 11 168 588 60 508 6.09e-41 161
Msa0387740 AT4G24810.6 29.008 393 259 7 211 589 32 418 8.32e-41 155
Msa0387740 AT4G24810.1 29.008 393 259 7 211 589 32 418 8.32e-41 155
Msa0387740 AT1G65950.2 30.657 274 177 6 215 482 113 379 3.91e-39 151
Msa0387740 AT4G24810.3 28.750 400 258 8 211 589 32 425 6.89e-39 150
Msa0387740 AT1G65950.1 30.657 274 177 6 215 482 113 379 2.53e-38 150
Msa0387740 AT4G24810.4 31.724 290 179 6 211 486 32 316 1.55e-37 143
Msa0387740 AT5G24810.2 26.369 493 278 13 168 588 60 539 4.46e-37 149
Msa0387740 AT4G24810.5 33.209 268 160 6 211 464 32 294 1.52e-36 140
Msa0387740 AT5G50330.2 26.829 451 280 10 152 580 14 436 5.36e-34 136
Msa0387740 AT5G05200.1 24.879 414 276 6 186 570 113 520 5.41e-34 137
Msa0387740 AT2G40090.1 28.617 311 200 5 199 491 87 393 1.78e-32 133
Msa0387740 AT1G11390.1 28.125 352 216 9 187 508 198 542 7.35e-32 132
Msa0387740 AT1G61640.3 28.267 329 202 10 204 506 213 533 1.21e-28 122
Msa0387740 AT1G61640.1 28.267 329 202 10 204 506 213 533 1.39e-28 122
Msa0387740 AT2G39190.1 36.250 160 99 1 204 363 202 358 1.59e-22 100
Msa0387740 AT4G01660.1 27.778 306 211 5 198 501 222 519 3.60e-22 102
Msa0387740 AT1G61640.2 30.049 203 124 6 204 394 213 409 6.59e-18 87.8

Find 183 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCCTTGTAGCTGGTTTAT+TGG 0.177430 3_1:+91806318 Msa0387740:intron
CTCTTTAAACAATTCATTAA+TGG 0.177743 3_1:-91805194 None:intergenic
CATTTATATAATCAATTTCT+TGG 0.199717 3_1:-91806051 None:intergenic
AGCCATTATTACTGCCATTT+AGG 0.200934 3_1:-91804121 None:intergenic
TACAGGAACTTCTAGATATA+AGG 0.236116 3_1:+91808563 Msa0387740:intron
GGAGGAACCTTTCTAAATAT+TGG 0.238190 3_1:+91809136 Msa0387740:CDS
ATAGGTATCATTACCCTAAA+TGG 0.241840 3_1:+91804107 Msa0387740:intron
GGCTTTATTGAGAGTGAATT+AGG 0.254061 3_1:+91805166 Msa0387740:CDS
ACCCTTGTAGCTGGTTTATT+GGG 0.269755 3_1:+91806319 Msa0387740:intron
GCCATTATTACTGCCATTTA+GGG 0.276747 3_1:-91804120 None:intergenic
GGCTCAAAGCAAGCTGTTAA+TGG 0.283062 3_1:+91804429 Msa0387740:CDS
ATTCAATGCCTTATTGATCT+TGG 0.300157 3_1:+91807302 Msa0387740:CDS
TATTGAGGCGTACTTGATTC+AGG 0.305517 3_1:+91806600 Msa0387740:CDS
AAGAAAATGTCATTGTTTAG+AGG 0.325510 3_1:+91809555 Msa0387740:three_prime_UTR
GAAATGCCGCCATCAAAATT+AGG 0.325630 3_1:+91804318 Msa0387740:CDS
CCACATTACCACAGTAGTTA+TGG 0.329310 3_1:+91809637 Msa0387740:three_prime_UTR
ACCCTAAATGGCAGTAATAA+TGG 0.329958 3_1:+91804119 Msa0387740:exon
TCTTTAAACAATTCATTAAT+GGG 0.331071 3_1:-91805193 None:intergenic
GCTACTATGTACACGGTATT+AGG 0.336158 3_1:+91809115 Msa0387740:CDS
ATCCAAGTGCTGGTAATGTT+TGG 0.338580 3_1:-91809689 None:intergenic
AGCTGTTAATGGAGCAAGTT+TGG 0.341642 3_1:+91804440 Msa0387740:CDS
CAATGCAAAATGGGCATATC+CGG 0.342054 3_1:+91804659 Msa0387740:CDS
GAGCAGACATTGTCTGCAAT+TGG 0.346799 3_1:+91807516 Msa0387740:CDS
TTCGTTGTCTTTGTCAATGC+TGG 0.352992 3_1:-91804480 None:intergenic
TTTCATATACAATAAGGAAT+TGG 0.380190 3_1:-91809416 None:intergenic
CCAATGAAAATTACAGTTCC+TGG 0.383016 3_1:+91804577 Msa0387740:CDS
TTCAAGTGGTGGAAGTTCAT+TGG 0.384033 3_1:-91804514 None:intergenic
TCCAAGTGCTGGTAATGTTT+GGG 0.384889 3_1:-91809688 None:intergenic
TAATGGTAGAGCTGTTAAAA+TGG 0.385147 3_1:+91804344 Msa0387740:CDS
TCAATTATTTATTACGACTT+TGG 0.385780 3_1:+91806794 Msa0387740:CDS
CCATCAAAATTAGGTAATAA+TGG 0.389209 3_1:+91804327 Msa0387740:CDS
TAAGGAATTGGATATTTGTT+GGG 0.389619 3_1:-91809404 None:intergenic
TACGGTATAAACACGACAAA+AGG 0.394062 3_1:-91803150 None:intergenic
TTTGGCATCCTTCTCATAAA+CGG 0.395475 3_1:-91806873 None:intergenic
ACAGATCCCCGGTGGGTTGG+AGG 0.397963 3_1:-91807328 None:intergenic
AGCAGACATTGTCTGCAATT+GGG 0.399926 3_1:+91807517 Msa0387740:CDS
TCTATTTCCCCGTGAATTTG+TGG 0.401899 3_1:+91804970 Msa0387740:CDS
ATCTTCACAAATGAGAAATC+TGG 0.404363 3_1:-91808442 None:intergenic
TTTCAGAGAAGTGAAACTTT+TGG 0.408412 3_1:+91805795 Msa0387740:CDS
ATAAGGAATTGGATATTTGT+TGG 0.411963 3_1:-91809405 None:intergenic
TTGGTGGTCCAACTAGAGAT+TGG 0.412828 3_1:+91805814 Msa0387740:CDS
ATAACAAAGGTGAAGGTTGA+TGG 0.416877 3_1:-91807672 None:intergenic
CGAAGATCACTAGACAATCT+TGG 0.421184 3_1:+91804186 Msa0387740:CDS
CCGAGACTTGCAGCAGCAAT+TGG 0.421258 3_1:-91805229 None:intergenic
ACATCAATAGCAAGATTTCC+AGG 0.425680 3_1:-91806764 None:intergenic
GTCCTCCTAGTGGGTCCTCT+TGG 0.429327 3_1:+91803269 Msa0387740:five_prime_UTR
GGAAGTTCATTGGAGATTGT+AGG 0.432975 3_1:-91804504 None:intergenic
GACAATGTCTGCTCTTGATC+TGG 0.434915 3_1:-91807507 None:intergenic
ATTGACACCAATATTTAGAA+AGG 0.438522 3_1:-91809143 None:intergenic
TAGCACAAGACCAGCCATTC+CGG 0.440262 3_1:+91807646 Msa0387740:CDS
TTTCACGCTGATCCACATCC+TGG 0.442896 3_1:+91806746 Msa0387740:CDS
CTCCTAGTGGGTCCTCTTGG+AGG 0.443022 3_1:+91803272 Msa0387740:five_prime_UTR
TTGCAAAAGTTTGATTGCCT+TGG 0.444011 3_1:-91809174 None:intergenic
GAAGGAGGAAAACGGCTTCA+TGG 0.444251 3_1:+91804876 Msa0387740:CDS
TGTCCAAGTTTAATAAAAGT+TGG 0.444282 3_1:-91804926 None:intergenic
TCTATTCTTTGAACTCTCAA+TGG 0.445983 3_1:-91808813 None:intergenic
GAAATTGATTATATAAATGA+AGG 0.452977 3_1:+91806055 Msa0387740:CDS
TTATGAGAAGGATGCCAAAA+AGG 0.452978 3_1:+91806877 Msa0387740:CDS
AGGTGAAGGTTGATGGAAAC+CGG 0.458214 3_1:-91807665 None:intergenic
GGAGGGCTCCAAGATCAATA+AGG 0.466597 3_1:-91807310 None:intergenic
TATTACGACTTTGGCATGAT+GGG 0.468315 3_1:+91806803 Msa0387740:CDS
CCAATTGCTGCTGCAAGTCT+CGG 0.469478 3_1:+91805229 Msa0387740:CDS
GGATGAACTCGCAAAATTGC+AGG 0.471584 3_1:+91804991 Msa0387740:CDS
TGCTGCTGCAAGTCTCGGTC+AGG 0.471750 3_1:+91805234 Msa0387740:CDS
CCACAGGGCCACAACTCGTC+GGG 0.471887 3_1:+91808596 Msa0387740:CDS
GTGTTACAGATATTGAAAAC+AGG 0.473505 3_1:+91806719 Msa0387740:intron
CCTCAGATGAAGGCTTCAGT+TGG 0.474873 3_1:+91804553 Msa0387740:CDS
TTGGGATTATACAGCAATGA+AGG 0.474937 3_1:+91806337 Msa0387740:CDS
TCTTGCTTCCACGTTACAAA+AGG 0.479209 3_1:-91803244 None:intergenic
CGAGTTCATCCACAAATTCA+CGG 0.480904 3_1:-91804979 None:intergenic
TTTGCAAATGGATCGTTTGT+TGG 0.485361 3_1:+91809190 Msa0387740:CDS
TCTGCTCTTGATCTGGTGAC+TGG 0.488384 3_1:-91807500 None:intergenic
AGAAAATGTCATTGTTTAGA+GGG 0.490479 3_1:+91809556 Msa0387740:three_prime_UTR
CAGATCCCCGGTGGGTTGGA+GGG 0.491136 3_1:-91807327 None:intergenic
ATTCTTACGGTCTATGCAAA+GGG 0.493150 3_1:+91809340 Msa0387740:CDS
TCCTAGTGGGTCCTCTTGGA+GGG 0.493209 3_1:+91803273 Msa0387740:five_prime_UTR
TTTGTGAAGCAAGTTGAGGC+AGG 0.494683 3_1:+91808840 Msa0387740:CDS
GTTATCAAAGTTCAAAGGCC+TGG 0.495296 3_1:+91805292 Msa0387740:CDS
GGAAAACGGCTTCATGGCTA+AGG 0.498904 3_1:+91804882 Msa0387740:CDS
GATAAGCAGAAGGAGGAAAA+CGG 0.502499 3_1:+91804868 Msa0387740:intron
TAAAGCCTCTTGCTTTCTGT+GGG 0.502807 3_1:-91805150 None:intergenic
GCTATCTGCCCGACGAGTTG+TGG 0.508655 3_1:-91808604 None:intergenic
TTGATGGAAACCGGAATGGC+TGG 0.509916 3_1:-91807656 None:intergenic
TCCCAAACATTACCAGCACT+TGG 0.511999 3_1:+91809687 Msa0387740:three_prime_UTR
TTAAATTATGCAAGAGTACA+AGG 0.512450 3_1:-91809664 None:intergenic
ATGAAGGGAAGAATGCTGAT+AGG 0.512805 3_1:+91806071 Msa0387740:CDS
CTGACAGATCCCCGGTGGGT+TGG 0.513021 3_1:-91807331 None:intergenic
TGGTAAATTTCGTAGATTTG+TGG 0.513813 3_1:+91804278 Msa0387740:CDS
CTTGGAGCCCTCCAACCCAC+CGG 0.514456 3_1:+91807320 Msa0387740:CDS
ACAGTCTGAACCTGTGCATA+GGG 0.514489 3_1:-91808472 None:intergenic
AATCTCATCACGTGCTATTG+AGG 0.516579 3_1:+91806585 Msa0387740:CDS
TTGGAGCCCTCCAACCCACC+GGG 0.517854 3_1:+91807321 Msa0387740:CDS
AATGGATCGTTTGTTGGTGC+AGG 0.519200 3_1:+91809196 Msa0387740:CDS
GCTTTCTGTGGGGAGAAAGC+AGG 0.519217 3_1:-91805139 None:intergenic
CCGACGAGTTGTGGCCCTGT+GGG 0.519502 3_1:-91808595 None:intergenic
ATAGCAAGATTTCCAGGATG+TGG 0.519629 3_1:-91806758 None:intergenic
GGCAGAGATCAATTGATGTA+TGG 0.520886 3_1:+91804598 Msa0387740:CDS
ATTGAGAGTTCAAAGAATAG+AGG 0.523885 3_1:+91808815 Msa0387740:CDS
CTCAGATGAAGGCTTCAGTT+GGG 0.526088 3_1:+91804554 Msa0387740:CDS
ATACCGATCCAATCTCTAGT+TGG 0.528498 3_1:-91805822 None:intergenic
TTATTGTAACAATATAGAAT+CGG 0.529878 3_1:+91804155 Msa0387740:CDS
GAGTTCATCCACAAATTCAC+GGG 0.530269 3_1:-91804978 None:intergenic
TTATTACGACTTTGGCATGA+TGG 0.530731 3_1:+91806802 Msa0387740:CDS
TAAATTTCGTAGATTTGTGG+TGG 0.532222 3_1:+91804281 Msa0387740:CDS
TTGACCTTGGAGTATGTACC+AGG 0.532309 3_1:+91806362 Msa0387740:CDS
GTCTCCACTTTATTCTCCGA+CGG 0.532763 3_1:-91804399 None:intergenic
GCAGACATTGTCTGCAATTG+GGG 0.533585 3_1:+91807518 Msa0387740:CDS
GTCTTTGTCAATGCTGGAGT+AGG 0.534650 3_1:-91804474 None:intergenic
ATAAAGCCTCTTGCTTTCTG+TGG 0.536314 3_1:-91805151 None:intergenic
AACTCTCAATGGCATTGACA+TGG 0.538554 3_1:-91808802 None:intergenic
ACGGTATAAACACGACAAAA+GGG 0.539286 3_1:-91803149 None:intergenic
GGTGTCAATTTGACTAGCCA+AGG 0.544223 3_1:+91809157 Msa0387740:CDS
TTCTCCCCACAGAAAGCAAG+AGG 0.547830 3_1:+91805145 Msa0387740:CDS
TGCTCTAATAACAAAGGTGA+AGG 0.550545 3_1:-91807679 None:intergenic
AGCAATGAAGGTGTTGACCT+TGG 0.557273 3_1:+91806349 Msa0387740:CDS
CCAACTGAAGCCTTCATCTG+AGG 0.557528 3_1:-91804553 None:intergenic
ATAAATTGTCAAAGAATGAA+AGG 0.558325 3_1:+91804232 Msa0387740:CDS
CAACTGAAGCCTTCATCTGA+GGG 0.559152 3_1:-91804552 None:intergenic
AATGCAAAATGGGCATATCC+GGG 0.559374 3_1:+91804660 Msa0387740:CDS
TATTCTTACGGTCTATGCAA+AGG 0.560981 3_1:+91809339 Msa0387740:CDS
GAAAGCGACAGTGTTACAAA+TGG 0.563568 3_1:+91809093 Msa0387740:CDS
AATAAAGTGGAGACAGTCAA+TGG 0.564916 3_1:+91804408 Msa0387740:CDS
GACAGTCTGAACCTGTGCAT+AGG 0.566917 3_1:-91808473 None:intergenic
CAGTTCGAGCAATCTCTCAC+GGG 0.571404 3_1:-91806843 None:intergenic
ATTACGACTTTGGCATGATG+GGG 0.574785 3_1:+91806804 Msa0387740:CDS
GCACTGCAAGATCCAAGTGC+TGG 0.577661 3_1:-91809699 None:intergenic
TAGAGCTGTTAAAATGGTAC+CGG 0.578175 3_1:+91804350 Msa0387740:CDS
TACATCAATTGATCTCTGCC+AGG 0.581512 3_1:-91804595 None:intergenic
AGGTATTAAAATAAATCAAG+TGG 0.581716 3_1:+91806528 Msa0387740:intron
ACAAAAGGTGTAAGAACAAG+TGG 0.584929 3_1:-91803229 None:intergenic
CCATAACTACTGTGGTAATG+TGG 0.585094 3_1:-91809637 None:intergenic
TGGCTTCACAGAAGAAAAGC+AGG 0.586577 3_1:+91804683 Msa0387740:CDS
CAAGTGGTTGAACTTGAACA+TGG 0.587413 3_1:-91803213 None:intergenic
ATAAGGCAACGACAGCCCAC+AGG 0.588619 3_1:+91808580 Msa0387740:CDS
AGCAAGAACGTCCTCCTAGT+GGG 0.590428 3_1:+91803260 Msa0387740:five_prime_UTR
GACACCGTCGGAGAATAAAG+TGG 0.590443 3_1:+91804395 Msa0387740:CDS
ACAGTTCGAGCAATCTCTCA+CGG 0.590615 3_1:-91806844 None:intergenic
CCCACAGGGCCACAACTCGT+CGG 0.591725 3_1:+91808595 Msa0387740:CDS
GATTGCTGCACCCTATGCAC+AGG 0.591848 3_1:+91808462 Msa0387740:CDS
TCTAGTCTGAAAGAGCTGCT+CGG 0.594593 3_1:+91809071 Msa0387740:intron
GTGGATACATTGACTTCTCG+TGG 0.595263 3_1:+91806547 Msa0387740:CDS
ACTATGTACACGGTATTAGG+AGG 0.601581 3_1:+91809118 Msa0387740:CDS
GTATAGCTTATATGTGTAAG+CGG 0.602317 3_1:-91809465 None:intergenic
CCCGACGAGTTGTGGCCCTG+TGG 0.603360 3_1:-91808596 None:intergenic
TGTTTAAAGAGTTTGAAGAT+CGG 0.606621 3_1:+91805206 Msa0387740:CDS
AAGTAGTTATCAAAGTTCAA+AGG 0.613460 3_1:+91805287 Msa0387740:CDS
AGGGAATCTGTATTACAGCT+CGG 0.617183 3_1:+91804902 Msa0387740:CDS
AGAAAATGCTCTAATAACAA+AGG 0.622886 3_1:-91807685 None:intergenic
CCTTACAGCTGACAGATCCC+CGG 0.625234 3_1:-91807339 None:intergenic
TACAGCTGACAGATCCCCGG+TGG 0.626173 3_1:-91807336 None:intergenic
AAATTGATTATATAAATGAA+GGG 0.628702 3_1:+91806056 Msa0387740:CDS
CTACCTCTAGTACTCGAACT+CGG 0.632492 3_1:-91808875 None:intergenic
GAAAGAAACATACAGGTACT+CGG 0.633321 3_1:-91806126 None:intergenic
TTGCAGGGTGTTGACACTGT+AGG 0.636866 3_1:+91809510 Msa0387740:three_prime_UTR
ACATCTGATAAGTTAAAGAG+TGG 0.637198 3_1:+91804258 Msa0387740:CDS
TTACGACTTTGGCATGATGG+GGG 0.641403 3_1:+91806805 Msa0387740:CDS
CTCCAAGAGGACCCACTAGG+AGG 0.641568 3_1:-91803271 None:intergenic
ATAACCTGGTACATACTCCA+AGG 0.642881 3_1:-91806366 None:intergenic
ACTCCGAGTTCGAGTACTAG+AGG 0.643048 3_1:+91808872 Msa0387740:CDS
GACATTGTCTGCAATTGGGG+AGG 0.644164 3_1:+91807521 Msa0387740:CDS
AAGCAAGAACGTCCTCCTAG+TGG 0.646163 3_1:+91803259 Msa0387740:five_prime_UTR
TTGCATTGTCGAAAAGAACA+CGG 0.647652 3_1:-91804644 None:intergenic
ACAAATGGCTACTATGTACA+CGG 0.650955 3_1:+91809108 Msa0387740:CDS
GAAAACGGCTTCATGGCTAA+GGG 0.653245 3_1:+91804883 Msa0387740:CDS
ACCCTCCAAGAGGACCCACT+AGG 0.662964 3_1:-91803274 None:intergenic
GGAGTTTGTGAAGCAAGTTG+AGG 0.666870 3_1:+91808836 Msa0387740:CDS
AAGGTAGAAACATACCAGGA+GGG 0.668694 3_1:-91803311 None:intergenic
GCAGTAATAATGGCTTTGCA+TGG 0.669620 3_1:+91804129 Msa0387740:CDS
AATGACAGACACCCTCCAAG+AGG 0.672584 3_1:-91803284 None:intergenic
AAGGTTGATGGAAACCGGAA+TGG 0.675520 3_1:-91807660 None:intergenic
AGAAAACTTAAAGCTGATCG+CGG 0.679693 3_1:+91805767 Msa0387740:intron
GACACGTAAAGAAAGAACAA+AGG 0.679744 3_1:-91804622 None:intergenic
TAAGGCAACGACAGCCCACA+GGG 0.682134 3_1:+91808581 Msa0387740:CDS
GGTCCAACTAGAGATTGGAT+CGG 0.683709 3_1:+91805819 Msa0387740:CDS
ACAGCTGACAGATCCCCGGT+GGG 0.686035 3_1:-91807335 None:intergenic
CATCGTGCAATTCTGCACAA+TGG 0.686650 3_1:+91805259 Msa0387740:CDS
AAGGAAAGCCATAACTACTG+TGG 0.689938 3_1:-91809645 None:intergenic
AAAGCCTCTTGCTTTCTGTG+GGG 0.714944 3_1:-91805149 None:intergenic
TGGAGCCCTCCAACCCACCG+GGG 0.715980 3_1:+91807322 Msa0387740:CDS
GCAAAATGGGCATATCCGGG+TGG 0.723451 3_1:+91804663 Msa0387740:CDS
TTGGACAGTTATCATCAACA+AGG 0.723832 3_1:+91804942 Msa0387740:CDS
TTATGTTTCGAAAATCACGA+CGG 0.732189 3_1:-91806096 None:intergenic
AGTTCATCCACAAATTCACG+GGG 0.744511 3_1:-91804977 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCATCAAATTATTAAAA+GGG - chr3_1:91803424-91803443 None:intergenic 10.0%
!! AATTTCATCAAATTATTAAA+AGG - chr3_1:91803425-91803444 None:intergenic 10.0%
!!! TTTCTTTTAATAAATCAATT+AGG + chr3_1:91804791-91804810 Msa0387740:intron 10.0%
!! AAATTGATTATATAAATGAA+GGG + chr3_1:91806056-91806075 Msa0387740:CDS 10.0%
!! AAACAATACAAATATTTAAA+AGG - chr3_1:91806165-91806184 None:intergenic 10.0%
!!! AATATTTTTCATATACAATA+AGG - chr3_1:91809425-91809444 None:intergenic 10.0%
!!! GTTTTATTTTTAATGTGTTA+CGG - chr3_1:91803171-91803190 None:intergenic 15.0%
!!! TTATTGATTTTGTTAATGTT+TGG - chr3_1:91803193-91803212 None:intergenic 15.0%
!! TTTCATCAAATTATTAAAAG+GGG - chr3_1:91803423-91803442 None:intergenic 15.0%
!! GAAAATCAATCAATATAATT+TGG - chr3_1:91803785-91803804 None:intergenic 15.0%
!! ATAAGAGAAATAAATTGTAA+AGG - chr3_1:91804069-91804088 None:intergenic 15.0%
!!! TGTTCATATTGATTTTTTAT+AGG + chr3_1:91804089-91804108 Msa0387740:intron 15.0%
!! TTATTGTAACAATATAGAAT+CGG + chr3_1:91804155-91804174 Msa0387740:CDS 15.0%
!! TTTATTTAGTGTATTAAACT+TGG + chr3_1:91805062-91805081 Msa0387740:intron 15.0%
!! TCTTTAAACAATTCATTAAT+GGG - chr3_1:91805196-91805215 None:intergenic 15.0%
!! CATTTATATAATCAATTTCT+TGG - chr3_1:91806054-91806073 None:intergenic 15.0%
!! GAAATTGATTATATAAATGA+AGG + chr3_1:91806055-91806074 Msa0387740:CDS 15.0%
!!! CTTTAATTTTAAAGAAAACA+AGG - chr3_1:91806412-91806431 None:intergenic 15.0%
!!! TTATTTGATTTTTTTTTTCC+CGG + chr3_1:91806501-91806520 Msa0387740:intron 15.0%
!! CTAATTATCTATTCTAATAA+AGG + chr3_1:91807136-91807155 Msa0387740:intron 15.0%
!! AAATTTATAAGATAGAGATA+TGG - chr3_1:91807422-91807441 None:intergenic 15.0%
!!! AATTTCATAATTTGATTTTC+AGG + chr3_1:91807437-91807456 Msa0387740:intron 15.0%
!!! ACTTGAATATTTAATTCTTT+TGG + chr3_1:91807545-91807564 Msa0387740:intron 15.0%
!!! TTATTATTGATGGAATTTTT+TGG + chr3_1:91807607-91807626 Msa0387740:intron 15.0%
!! AAGAAACAAATAAGAAAATA+GGG - chr3_1:91807933-91807952 None:intergenic 15.0%
!! AAAGAAACAAATAAGAAAAT+AGG - chr3_1:91807934-91807953 None:intergenic 15.0%
!!! TTCAACTTATTTTTTCTTAT+TGG + chr3_1:91809029-91809048 Msa0387740:intron 15.0%
!! TGAACATGATAAAAAATATT+TGG - chr3_1:91809249-91809268 None:intergenic 15.0%
!! AACGTATTAACATATTCAAA+TGG - chr3_1:91803739-91803758 None:intergenic 20.0%
!!! TGAATATGTTAATACGTTTT+TGG + chr3_1:91803741-91803760 Msa0387740:intron 20.0%
!!! ATTTTACAAGATATAACAAC+CGG - chr3_1:91803921-91803940 None:intergenic 20.0%
!! ATAAATTGTCAAAGAATGAA+AGG + chr3_1:91804232-91804251 Msa0387740:CDS 20.0%
!! CTCTTTAAACAATTCATTAA+TGG - chr3_1:91805197-91805216 None:intergenic 20.0%
!!! ATATATGATTAATTTTGCTG+AGG - chr3_1:91805462-91805481 None:intergenic 20.0%
!!! ACAACTAAGTTTTATATACA+TGG + chr3_1:91805595-91805614 Msa0387740:intron 20.0%
!! TAGAGATTGGAAATTTATAA+AGG - chr3_1:91806261-91806280 None:intergenic 20.0%
!! TATGCGGTTAATATTAAAAT+TGG - chr3_1:91806287-91806306 None:intergenic 20.0%
!!! TATTTGATTTTTTTTTTCCC+GGG + chr3_1:91806502-91806521 Msa0387740:intron 20.0%
!! AGGTATTAAAATAAATCAAG+TGG + chr3_1:91806528-91806547 Msa0387740:intron 20.0%
!! TCAATTATTTATTACGACTT+TGG + chr3_1:91806794-91806813 Msa0387740:CDS 20.0%
!! AAAGTTTAAGTAAATGTGAA+AGG - chr3_1:91807261-91807280 None:intergenic 20.0%
!!! AGTTTTAATCTTTTACAAGA+TGG + chr3_1:91807371-91807390 Msa0387740:intron 20.0%
!!! TATGGCAATTTTATTATTGA+TGG + chr3_1:91807597-91807616 Msa0387740:intron 20.0%
!! AGAAACAAATAAGAAAATAG+GGG - chr3_1:91807932-91807951 None:intergenic 20.0%
!!! TCATGATATCTTCATATTTT+AGG + chr3_1:91808127-91808146 Msa0387740:intron 20.0%
!! TGAGAAAAAACTATTAAAGT+AGG + chr3_1:91808160-91808179 Msa0387740:intron 20.0%
!!! GTGAAGCATTATTTTAATTA+TGG + chr3_1:91808720-91808739 Msa0387740:intron 20.0%
!!! AGAAAAAATAAGTTGAAGAA+TGG - chr3_1:91809026-91809045 None:intergenic 20.0%
!!! TTTTGTTCATACTATTCTTA+CGG + chr3_1:91809327-91809346 Msa0387740:CDS 20.0%
!! TTTCATATACAATAAGGAAT+TGG - chr3_1:91809419-91809438 None:intergenic 20.0%
! TTGTGAATGACTTAAATTCA+AGG + chr3_1:91803516-91803535 Msa0387740:intron 25.0%
! TGAACTCTATCTTAGATAAT+TGG - chr3_1:91803577-91803596 None:intergenic 25.0%
!!! ACCTTTTTAAGAGTAAGATA+TGG + chr3_1:91803694-91803713 Msa0387740:intron 25.0%
! GGTTGTTATATCTTGTAAAA+TGG + chr3_1:91803920-91803939 Msa0387740:intron 25.0%
!!! TTATTACCTAATTTTGATGG+CGG - chr3_1:91804327-91804346 None:intergenic 25.0%
!! CCATTATTACCTAATTTTGA+TGG - chr3_1:91804330-91804349 None:intergenic 25.0%
! CCATCAAAATTAGGTAATAA+TGG + chr3_1:91804327-91804346 Msa0387740:CDS 25.0%
! TAAATCAATTAGGTTTCTGT+TGG + chr3_1:91804801-91804820 Msa0387740:intron 25.0%
! TGTCCAAGTTTAATAAAAGT+TGG - chr3_1:91804929-91804948 None:intergenic 25.0%
! TTTAGTGTATTAAACTTGGT+TGG + chr3_1:91805066-91805085 Msa0387740:intron 25.0%
! TGTTTAAAGAGTTTGAAGAT+CGG + chr3_1:91805206-91805225 Msa0387740:CDS 25.0%
! AAGTAGTTATCAAAGTTCAA+AGG + chr3_1:91805287-91805306 Msa0387740:CDS 25.0%
! TTGTCTAATATTACGAAACT+TGG + chr3_1:91805494-91805513 Msa0387740:intron 25.0%
! TACTATGATATCATCCAAAA+AGG + chr3_1:91805680-91805699 Msa0387740:intron 25.0%
! ACTATGATATCATCCAAAAA+GGG + chr3_1:91805681-91805700 Msa0387740:intron 25.0%
! TCAAACTTTAACATGTAATG+AGG - chr3_1:91805908-91805927 None:intergenic 25.0%
!! GTGCAAAGTATTAAAAATGA+TGG - chr3_1:91805977-91805996 None:intergenic 25.0%
!! TGATTTTCGAAACATAAAGT+GGG + chr3_1:91806102-91806121 Msa0387740:CDS 25.0%
! TATATGAGACATGATTATGA+AGG - chr3_1:91806217-91806236 None:intergenic 25.0%
! CATAATCATGTCTCATATAT+TGG + chr3_1:91806218-91806237 Msa0387740:intron 25.0%
! TTAAAATTGGAGTTAGAGAT+TGG - chr3_1:91806274-91806293 None:intergenic 25.0%
! CTTCAAGGAAATAAAGTTAT+TGG - chr3_1:91806435-91806454 None:intergenic 25.0%
!!! TTTATTTTAATACCTGTTCC+CGG - chr3_1:91806523-91806542 None:intergenic 25.0%
! TATTAGATACACTTTCAGAT+AGG - chr3_1:91806639-91806658 None:intergenic 25.0%
! GTTGAATATATTCATCTGAT+CGG + chr3_1:91806665-91806684 Msa0387740:intron 25.0%
!! TTGATTGTTGATAAGCTATT+AGG + chr3_1:91806983-91807002 Msa0387740:intron 25.0%
!!! GACAGATTTTTGCTATAATT+CGG - chr3_1:91807116-91807135 None:intergenic 25.0%
! TTCCGAATTATCTGAATTTA+TGG + chr3_1:91807579-91807598 Msa0387740:intron 25.0%
! TGCCATAAATTCAGATAATT+CGG - chr3_1:91807584-91807603 None:intergenic 25.0%
! AGAAAATGCTCTAATAACAA+AGG - chr3_1:91807688-91807707 None:intergenic 25.0%
! TTACTTTAAATGAGGTACAA+AGG - chr3_1:91807762-91807781 None:intergenic 25.0%
!! CATATACGATATACCAATTT+TGG - chr3_1:91807815-91807834 None:intergenic 25.0%
!! AGAACTTTTCAATTTCCTTT+TGG - chr3_1:91807898-91807917 None:intergenic 25.0%
!!! AATAAGAAAATAGGGGTATT+GGG - chr3_1:91807925-91807944 None:intergenic 25.0%
!! AAATAAGAAAATAGGGGTAT+TGG - chr3_1:91807926-91807945 None:intergenic 25.0%
! CCATTAAACCTATATTTCAT+GGG - chr3_1:91808067-91808086 None:intergenic 25.0%
! TCCATTAAACCTATATTTCA+TGG - chr3_1:91808068-91808087 None:intergenic 25.0%
! ATATCCCAAATTATTTACCT+TGG + chr3_1:91808196-91808215 Msa0387740:intron 25.0%
! TGAGTTAAAGTGTATCTAAA+TGG - chr3_1:91808317-91808336 None:intergenic 25.0%
! AACTCATTTACACAATAACA+CGG + chr3_1:91808331-91808350 Msa0387740:intron 25.0%
! ATTACAAAACAAACATCATC+TGG - chr3_1:91808687-91808706 None:intergenic 25.0%
!! ACATTAAATTACGTCTTGTT+TGG + chr3_1:91808959-91808978 Msa0387740:intron 25.0%
! ATTGACACCAATATTTAGAA+AGG - chr3_1:91809146-91809165 None:intergenic 25.0%
! TAAGGAATTGGATATTTGTT+GGG - chr3_1:91809407-91809426 None:intergenic 25.0%
! ATAAGGAATTGGATATTTGT+TGG - chr3_1:91809408-91809427 None:intergenic 25.0%
!! AAGTTTTACAAAAAAGTTGC+AGG + chr3_1:91809494-91809513 Msa0387740:three_prime_UTR 25.0%
!! AGTTTTACAAAAAAGTTGCA+GGG + chr3_1:91809495-91809514 Msa0387740:three_prime_UTR 25.0%
!! TGACATTTTCTTTATCATCA+AGG - chr3_1:91809547-91809566 None:intergenic 25.0%
! AAGAAAATGTCATTGTTTAG+AGG + chr3_1:91809555-91809574 Msa0387740:three_prime_UTR 25.0%
! AGAAAATGTCATTGTTTAGA+GGG + chr3_1:91809556-91809575 Msa0387740:three_prime_UTR 25.0%
!! TTTTCTAACTATAGTGTACA+TGG - chr3_1:91809604-91809623 None:intergenic 25.0%
!! TTAAATTATGCAAGAGTACA+AGG - chr3_1:91809667-91809686 None:intergenic 25.0%
TAACAATTCAGAGAAGAAGA+AGG - chr3_1:91803343-91803362 None:intergenic 30.0%
!! TGATCATTGAGTTGAAAGAA+AGG - chr3_1:91803614-91803633 None:intergenic 30.0%
CTTAGTTCAATTAGACAACA+TGG + chr3_1:91803642-91803661 Msa0387740:intron 30.0%
!! TGGTTAGTTTACTATTGTAC+TGG + chr3_1:91803662-91803681 Msa0387740:intron 30.0%
GCCATATCTTACTCTTAAAA+AGG - chr3_1:91803698-91803717 None:intergenic 30.0%
! TAGCTAGAGTTTAGAATCAT+TGG + chr3_1:91803805-91803824 Msa0387740:intron 30.0%
! AGCTAGAGTTTAGAATCATT+GGG + chr3_1:91803806-91803825 Msa0387740:intron 30.0%
TTAGGGGTAATCTTGTAAAT+TGG + chr3_1:91803878-91803897 Msa0387740:intron 30.0%
TCTTGTTAGAATTAGAACAC+TGG - chr3_1:91804036-91804055 None:intergenic 30.0%
ATAGGTATCATTACCCTAAA+TGG + chr3_1:91804107-91804126 Msa0387740:intron 30.0%
ACATCTGATAAGTTAAAGAG+TGG + chr3_1:91804258-91804277 Msa0387740:CDS 30.0%
TGGTAAATTTCGTAGATTTG+TGG + chr3_1:91804278-91804297 Msa0387740:CDS 30.0%
TAAATTTCGTAGATTTGTGG+TGG + chr3_1:91804281-91804300 Msa0387740:CDS 30.0%
TAATGGTAGAGCTGTTAAAA+TGG + chr3_1:91804344-91804363 Msa0387740:CDS 30.0%
!!! AAAACTTTTAGCTCTTCAAG+TGG - chr3_1:91804531-91804550 None:intergenic 30.0%
! TTCTTTTCGACAATGCAAAA+TGG + chr3_1:91804649-91804668 Msa0387740:CDS 30.0%
! TCTTTTCGACAATGCAAAAT+GGG + chr3_1:91804650-91804669 Msa0387740:CDS 30.0%
! TTGCATTTTAGATAAGCAGA+AGG + chr3_1:91804858-91804877 Msa0387740:intron 30.0%
! GGTCCAACTTTTATTAAACT+TGG + chr3_1:91804923-91804942 Msa0387740:CDS 30.0%
!! GTCAATATTTTCAAGCTCAT+TGG + chr3_1:91805032-91805051 Msa0387740:intron 30.0%
TTCTCGATATAACATTCTTC+AGG + chr3_1:91805108-91805127 Msa0387740:intron 30.0%
ATATAACATTCTTCAGGACA+AGG + chr3_1:91805114-91805133 Msa0387740:intron 30.0%
CGTTAGTATCATGTTTAAGA+TGG + chr3_1:91805405-91805424 Msa0387740:intron 30.0%
! TCATGTTTAAGATGGATCTA+AGG + chr3_1:91805413-91805432 Msa0387740:intron 30.0%
TATCTGGTCTAGTTATTGTA+AGG + chr3_1:91805657-91805676 Msa0387740:intron 30.0%
! TTTCAGAGAAGTGAAACTTT+TGG + chr3_1:91805795-91805814 Msa0387740:CDS 30.0%
CTTTAACATGTAATGAGGTA+AGG - chr3_1:91805903-91805922 None:intergenic 30.0%
! AAAGTTTGAGCAACTCTTTT+TGG + chr3_1:91805919-91805938 Msa0387740:intron 30.0%
! AAGTTTGAGCAACTCTTTTT+GGG + chr3_1:91805920-91805939 Msa0387740:intron 30.0%
TTATGTTTCGAAAATCACGA+CGG - chr3_1:91806099-91806118 None:intergenic 30.0%
! GTGATTTTCGAAACATAAAG+TGG + chr3_1:91806101-91806120 Msa0387740:CDS 30.0%
TATTGCAGAAAGAAACATAC+AGG - chr3_1:91806136-91806155 None:intergenic 30.0%
TCAGAGTAAATCAAGTTTCA+AGG - chr3_1:91806194-91806213 None:intergenic 30.0%
TTGATAGAAACAACACTTCA+AGG - chr3_1:91806450-91806469 None:intergenic 30.0%
ATAAGAGCAATTATGAATCC+AGG - chr3_1:91806485-91806504 None:intergenic 30.0%
!!! TTATTTTAATACCTGTTCCC+GGG - chr3_1:91806522-91806541 None:intergenic 30.0%
GTGTTACAGATATTGAAAAC+AGG + chr3_1:91806719-91806738 Msa0387740:intron 30.0%
!! GTTTTATTCCGTTTATGAGA+AGG + chr3_1:91806865-91806884 Msa0387740:CDS 30.0%
! TGAAAGAAACTAGACCTTTT+TGG - chr3_1:91806894-91806913 None:intergenic 30.0%
! ATTCAATGCCTTATTGATCT+TGG + chr3_1:91807302-91807321 Msa0387740:CDS 30.0%
!!! CATAATTTGATTTTCAGGTG+AGG + chr3_1:91807442-91807461 Msa0387740:intron 30.0%
! GAGATCTGTACAATTTTTCT+TGG + chr3_1:91807464-91807483 Msa0387740:CDS 30.0%
!!! TATTGATGGAATTTTTTGGC+AGG + chr3_1:91807611-91807630 Msa0387740:intron 30.0%
! ACCTCATTTAAAGTAAGCTA+AGG + chr3_1:91807766-91807785 Msa0387740:intron 30.0%
ACCTTAGCTTACTTTAAATG+AGG - chr3_1:91807770-91807789 None:intergenic 30.0%
!! ATATACCAATTTTGGTATGC+CGG - chr3_1:91807807-91807826 None:intergenic 30.0%
TATTGGCAATGAAACATGAT+TGG + chr3_1:91807991-91808010 Msa0387740:intron 30.0%
! CCTATTGTTCTTTTCTTTCT+CGG - chr3_1:91808028-91808047 None:intergenic 30.0%
AGAAAAGAACAATAGGATGT+AGG + chr3_1:91808032-91808051 Msa0387740:intron 30.0%
TAAACCTATATTTCATGGGA+TGG - chr3_1:91808063-91808082 None:intergenic 30.0%
CCCATGAAATATAGGTTTAA+TGG + chr3_1:91808064-91808083 Msa0387740:intron 30.0%
! AATCATGCCTTATACTGATT+TGG - chr3_1:91808094-91808113 None:intergenic 30.0%
AAATCAGTATAAGGCATGAT+TGG + chr3_1:91808093-91808112 Msa0387740:intron 30.0%
GACACCAAGGTAAATAATTT+GGG - chr3_1:91808203-91808222 None:intergenic 30.0%
TGACACCAAGGTAAATAATT+TGG - chr3_1:91808204-91808223 None:intergenic 30.0%
ACTCATTTACACAATAACAC+GGG + chr3_1:91808332-91808351 Msa0387740:intron 30.0%
! TGACTTTTTATTCTTCTGAC+AGG + chr3_1:91808400-91808419 Msa0387740:intron 30.0%
ATCTTCACAAATGAGAAATC+TGG - chr3_1:91808445-91808464 None:intergenic 30.0%
!! ATAGCATTTTAACCGAGAAT+GGG - chr3_1:91808516-91808535 None:intergenic 30.0%
! TATATCATGCATGCTTTTAC+AGG + chr3_1:91808546-91808565 Msa0387740:intron 30.0%
TACAGGAACTTCTAGATATA+AGG + chr3_1:91808563-91808582 Msa0387740:intron 30.0%
AAAGCTTAAATGAAAGTTCC+AGG - chr3_1:91808659-91808678 None:intergenic 30.0%
ACTAGAATTAACAAGTCTCA+CGG + chr3_1:91808755-91808774 Msa0387740:intron 30.0%
TCTATTCTTTGAACTCTCAA+TGG - chr3_1:91808816-91808835 None:intergenic 30.0%
ATTGAGAGTTCAAAGAATAG+AGG + chr3_1:91808815-91808834 Msa0387740:CDS 30.0%
GTATAGCTTATATGTGTAAG+CGG - chr3_1:91809468-91809487 None:intergenic 30.0%
ACGGTATAAACACGACAAAA+GGG - chr3_1:91803152-91803171 None:intergenic 35.0%
TACGGTATAAACACGACAAA+AGG - chr3_1:91803153-91803172 None:intergenic 35.0%
! ACAAAAGGTGTAAGAACAAG+TGG - chr3_1:91803232-91803251 None:intergenic 35.0%
! TTCTTACACCTTTTGTAACG+TGG + chr3_1:91803236-91803255 Msa0387740:five_prime_UTR 35.0%
AAGAAAGGTAGAAACATACC+AGG - chr3_1:91803318-91803337 None:intergenic 35.0%
TTCCATAAGTTATCTCGACT+GGG + chr3_1:91803382-91803401 Msa0387740:intron 35.0%
TTAAGAGTAAGATATGGCAG+TGG + chr3_1:91803700-91803719 Msa0387740:intron 35.0%
GAGTATGACTCATAGTAGTT+AGG + chr3_1:91803832-91803851 Msa0387740:intron 35.0%
GAACTGTCATGTACAGTTTA+GGG + chr3_1:91803861-91803880 Msa0387740:intron 35.0%
AACTGTCATGTACAGTTTAG+GGG + chr3_1:91803862-91803881 Msa0387740:intron 35.0%
CAACCGGTGTTTAAATACTA+CGG - chr3_1:91803905-91803924 None:intergenic 35.0%
CGAAATTTGATCATGGAACT+CGG - chr3_1:91803971-91803990 None:intergenic 35.0%
GAACACACGAAATTTGATCA+TGG - chr3_1:91803978-91803997 None:intergenic 35.0%
ACCCTAAATGGCAGTAATAA+TGG + chr3_1:91804119-91804138 Msa0387740:exon 35.0%
! GCCATTATTACTGCCATTTA+GGG - chr3_1:91804123-91804142 None:intergenic 35.0%
! AGCCATTATTACTGCCATTT+AGG - chr3_1:91804124-91804143 None:intergenic 35.0%
TAGAGCTGTTAAAATGGTAC+CGG + chr3_1:91804350-91804369 Msa0387740:CDS 35.0%
AATAAAGTGGAGACAGTCAA+TGG + chr3_1:91804408-91804427 Msa0387740:CDS 35.0%
! CCAGGAACTGTAATTTTCAT+TGG - chr3_1:91804580-91804599 None:intergenic 35.0%
CCAATGAAAATTACAGTTCC+TGG + chr3_1:91804577-91804596 Msa0387740:CDS 35.0%
GACACGTAAAGAAAGAACAA+AGG - chr3_1:91804625-91804644 None:intergenic 35.0%
TTGCATTGTCGAAAAGAACA+CGG - chr3_1:91804647-91804666 None:intergenic 35.0%
! TTTTCTGAACTCTAACTAGC+TGG + chr3_1:91804722-91804741 Msa0387740:intron 35.0%
! CATTTTAGATAAGCAGAAGG+AGG + chr3_1:91804861-91804880 Msa0387740:intron 35.0%
TTGGACAGTTATCATCAACA+AGG + chr3_1:91804942-91804961 Msa0387740:CDS 35.0%
!! GGCTTTATTGAGAGTGAATT+AGG + chr3_1:91805166-91805185 Msa0387740:CDS 35.0%
TCAAAAAGCTTCTTCAAACC+AGG - chr3_1:91805313-91805332 None:intergenic 35.0%
AACATCACAAGATGTGCAAA+TGG - chr3_1:91805372-91805391 None:intergenic 35.0%
AAGGATTTCTGAATTGCTAG+AGG + chr3_1:91805432-91805451 Msa0387740:intron 35.0%
TATGTCTTTCACAATCAGTG+TGG - chr3_1:91805639-91805658 None:intergenic 35.0%
CTGATTGTGAAAGACATATC+TGG + chr3_1:91805641-91805660 Msa0387740:intron 35.0%
AGAAAACTTAAAGCTGATCG+CGG + chr3_1:91805767-91805786 Msa0387740:intron 35.0%
GAAAGAAACATACAGGTACT+CGG - chr3_1:91806129-91806148 None:intergenic 35.0%
TTGGGATTATACAGCAATGA+AGG + chr3_1:91806337-91806356 Msa0387740:CDS 35.0%
CACTATTCAAGATGATAACC+TGG - chr3_1:91806383-91806402 None:intergenic 35.0%
AATTATGAATCCAGGTTCAG+TGG - chr3_1:91806477-91806496 None:intergenic 35.0%
!!! ATTTTTTTTTTCCCGGGAAC+AGG + chr3_1:91806508-91806527 Msa0387740:intron 35.0%
TACACTTTCAGATAGGAACA+AGG - chr3_1:91806632-91806651 None:intergenic 35.0%
ACATCAATAGCAAGATTTCC+AGG - chr3_1:91806767-91806786 None:intergenic 35.0%
TTATTACGACTTTGGCATGA+TGG + chr3_1:91806802-91806821 Msa0387740:CDS 35.0%
TATTACGACTTTGGCATGAT+GGG + chr3_1:91806803-91806822 Msa0387740:CDS 35.0%
TTTGGCATCCTTCTCATAAA+CGG - chr3_1:91806876-91806895 None:intergenic 35.0%
TTATGAGAAGGATGCCAAAA+AGG + chr3_1:91806877-91806896 Msa0387740:CDS 35.0%
CATTACAAGAAGACACAAAC+AGG - chr3_1:91807028-91807047 None:intergenic 35.0%
TTCACATTCACACACACATT+AGG + chr3_1:91807065-91807084 Msa0387740:intron 35.0%
ATAACAAAGGTGAAGGTTGA+TGG - chr3_1:91807675-91807694 None:intergenic 35.0%
TGCTCTAATAACAAAGGTGA+AGG - chr3_1:91807682-91807701 None:intergenic 35.0%
!! AGAGCATTTTCTACACTTGA+AGG + chr3_1:91807696-91807715 Msa0387740:CDS 35.0%
TTCATGCACATTAGAAGAGA+AGG - chr3_1:91807728-91807747 None:intergenic 35.0%
GGTATATCGTATATGTGAAG+AGG + chr3_1:91807820-91807839 Msa0387740:intron 35.0%
TCTTTGTAAACCTTTCTGCA+CGG + chr3_1:91807949-91807968 Msa0387740:intron 35.0%
TCATGAGGAAAGTAGTGTAT+TGG + chr3_1:91807974-91807993 Msa0387740:intron 35.0%
CCGAGAAAGAAAAGAACAAT+AGG + chr3_1:91808025-91808044 Msa0387740:intron 35.0%
AAAGAACAATAGGATGTAGG+TGG + chr3_1:91808035-91808054 Msa0387740:intron 35.0%
TGGAACACCAAATCAGTATA+AGG + chr3_1:91808084-91808103 Msa0387740:intron 35.0%
ATAACTACATGTCTAGCGTA+GGG - chr3_1:91808227-91808246 None:intergenic 35.0%
AATAACTACATGTCTAGCGT+AGG - chr3_1:91808228-91808247 None:intergenic 35.0%
TTTATTCTTCTGACAGGCAT+AGG + chr3_1:91808406-91808425 Msa0387740:intron 35.0%
TCAGTTATTGTTCCCATTCT+CGG + chr3_1:91808501-91808520 Msa0387740:intron 35.0%
!! CATAGCATTTTAACCGAGAA+TGG - chr3_1:91808517-91808536 None:intergenic 35.0%
GCATGTGAAGATGAAAGAAT+TGG - chr3_1:91808902-91808921 None:intergenic 35.0%
TCTTTCATCTTCACATGCTA+TGG + chr3_1:91808904-91808923 Msa0387740:intron 35.0%
ACAAATGGCTACTATGTACA+CGG + chr3_1:91809108-91809127 Msa0387740:CDS 35.0%
GGAGGAACCTTTCTAAATAT+TGG + chr3_1:91809136-91809155 Msa0387740:CDS 35.0%
TTGCAAAAGTTTGATTGCCT+TGG - chr3_1:91809177-91809196 None:intergenic 35.0%
! GGCAATCAAACTTTTGCAAA+TGG + chr3_1:91809178-91809197 Msa0387740:CDS 35.0%
TTTGCAAATGGATCGTTTGT+TGG + chr3_1:91809190-91809209 Msa0387740:CDS 35.0%
GTATCAGCTTATTCATATGC+AGG + chr3_1:91809302-91809321 Msa0387740:intron 35.0%
TATTCTTACGGTCTATGCAA+AGG + chr3_1:91809339-91809358 Msa0387740:CDS 35.0%
ATTCTTACGGTCTATGCAAA+GGG + chr3_1:91809340-91809359 Msa0387740:CDS 35.0%
CAAGTGGTTGAACTTGAACA+TGG - chr3_1:91803216-91803235 None:intergenic 40.0%
TCTTGCTTCCACGTTACAAA+AGG - chr3_1:91803247-91803266 None:intergenic 40.0%
AAGGTAGAAACATACCAGGA+GGG - chr3_1:91803314-91803333 None:intergenic 40.0%
AAAGGTAGAAACATACCAGG+AGG - chr3_1:91803315-91803334 None:intergenic 40.0%
GAGAAGAAGAAGGAGAAGAA+AGG - chr3_1:91803333-91803352 None:intergenic 40.0%
CTTCCATAAGTTATCTCGAC+TGG + chr3_1:91803381-91803400 Msa0387740:intron 40.0%
TACCCAGTCGAGATAACTTA+TGG - chr3_1:91803387-91803406 None:intergenic 40.0%
CGAACTGTCATGTACAGTTT+AGG + chr3_1:91803860-91803879 Msa0387740:intron 40.0%
GGACCGTAGTATTTAAACAC+CGG + chr3_1:91803899-91803918 Msa0387740:intron 40.0%
! GCAGTAATAATGGCTTTGCA+TGG + chr3_1:91804129-91804148 Msa0387740:CDS 40.0%
CGAAGATCACTAGACAATCT+TGG + chr3_1:91804186-91804205 Msa0387740:CDS 40.0%
GAAATGCCGCCATCAAAATT+AGG + chr3_1:91804318-91804337 Msa0387740:CDS 40.0%
!! CTTTTTGCTATCTCAGTTGC+CGG - chr3_1:91804372-91804391 None:intergenic 40.0%
AGCAAAAAGAAAGACACCGT+CGG + chr3_1:91804383-91804402 Msa0387740:CDS 40.0%
AGCTGTTAATGGAGCAAGTT+TGG + chr3_1:91804440-91804459 Msa0387740:CDS 40.0%
TTCGTTGTCTTTGTCAATGC+TGG - chr3_1:91804483-91804502 None:intergenic 40.0%
GGAAGTTCATTGGAGATTGT+AGG - chr3_1:91804507-91804526 None:intergenic 40.0%
! TTCAAGTGGTGGAAGTTCAT+TGG - chr3_1:91804517-91804536 None:intergenic 40.0%
!!! ACTTTTAGCTCTTCAAGTGG+TGG - chr3_1:91804528-91804547 None:intergenic 40.0%
! AAAGTTTTGCCCTCAGATGA+AGG + chr3_1:91804543-91804562 Msa0387740:CDS 40.0%
TACATCAATTGATCTCTGCC+AGG - chr3_1:91804598-91804617 None:intergenic 40.0%
GGCAGAGATCAATTGATGTA+TGG + chr3_1:91804598-91804617 Msa0387740:CDS 40.0%
CAATGCAAAATGGGCATATC+CGG + chr3_1:91804659-91804678 Msa0387740:CDS 40.0%
AATGCAAAATGGGCATATCC+GGG + chr3_1:91804660-91804679 Msa0387740:CDS 40.0%
TTCACAGAAGAAAAGCAGGT+AGG + chr3_1:91804687-91804706 Msa0387740:intron 40.0%
! GAAGAAAAGCAGGTAGGTTT+TGG + chr3_1:91804693-91804712 Msa0387740:intron 40.0%
CTAGCTGGTAGAAAGTTTCT+CGG + chr3_1:91804737-91804756 Msa0387740:intron 40.0%
GATAAGCAGAAGGAGGAAAA+CGG + chr3_1:91804868-91804887 Msa0387740:intron 40.0%
AGGGAATCTGTATTACAGCT+CGG + chr3_1:91804902-91804921 Msa0387740:CDS 40.0%
TCTATTTCCCCGTGAATTTG+TGG + chr3_1:91804970-91804989 Msa0387740:CDS 40.0%
AGTTCATCCACAAATTCACG+GGG - chr3_1:91804980-91804999 None:intergenic 40.0%
GAGTTCATCCACAAATTCAC+GGG - chr3_1:91804981-91805000 None:intergenic 40.0%
CGAGTTCATCCACAAATTCA+CGG - chr3_1:91804982-91805001 None:intergenic 40.0%
TAAAGCCTCTTGCTTTCTGT+GGG - chr3_1:91805153-91805172 None:intergenic 40.0%
ATAAAGCCTCTTGCTTTCTG+TGG - chr3_1:91805154-91805173 None:intergenic 40.0%
GTTATCAAAGTTCAAAGGCC+TGG + chr3_1:91805292-91805311 Msa0387740:CDS 40.0%
!! CAAGCTTTAACGTCCCTTTT+TGG - chr3_1:91805697-91805716 None:intergenic 40.0%
CAAAAAGGGACGTTAAAGCT+TGG + chr3_1:91805695-91805714 Msa0387740:intron 40.0%
!!! CAGCTTTAAGTTTTCTGGAC+AGG - chr3_1:91805763-91805782 None:intergenic 40.0%
!!! GCGATCAGCTTTAAGTTTTC+TGG - chr3_1:91805768-91805787 None:intergenic 40.0%
! CAGAGAAGTGAAACTTTTGG+TGG + chr3_1:91805798-91805817 Msa0387740:CDS 40.0%
ATACCGATCCAATCTCTAGT+TGG - chr3_1:91805825-91805844 None:intergenic 40.0%
ATGAAGGGAAGAATGCTGAT+AGG + chr3_1:91806071-91806090 Msa0387740:CDS 40.0%
! ACCCTTGTAGCTGGTTTATT+GGG + chr3_1:91806319-91806338 Msa0387740:intron 40.0%
TCCCAATAAACCAGCTACAA+GGG - chr3_1:91806323-91806342 None:intergenic 40.0%
ATCCCAATAAACCAGCTACA+AGG - chr3_1:91806324-91806343 None:intergenic 40.0%
ATAACCTGGTACATACTCCA+AGG - chr3_1:91806369-91806388 None:intergenic 40.0%
TATCAATATGCCACTGAACC+TGG + chr3_1:91806464-91806483 Msa0387740:intron 40.0%
! AATCTCATCACGTGCTATTG+AGG + chr3_1:91806585-91806604 Msa0387740:CDS 40.0%
TATTGAGGCGTACTTGATTC+AGG + chr3_1:91806600-91806619 Msa0387740:CDS 40.0%
ATAGCAAGATTTCCAGGATG+TGG - chr3_1:91806761-91806780 None:intergenic 40.0%
ATTACGACTTTGGCATGATG+GGG + chr3_1:91806804-91806823 Msa0387740:CDS 40.0%
CTTTCAATTGACAACGATGC+AGG + chr3_1:91807277-91807296 Msa0387740:intron 40.0%
AGCAGACATTGTCTGCAATT+GGG + chr3_1:91807517-91807536 Msa0387740:CDS 40.0%
!! AATTTTGGTATGCCGGACTT+CGG - chr3_1:91807800-91807819 None:intergenic 40.0%
GAATATGAACCTAAGCTCGA+AGG + chr3_1:91807859-91807878 Msa0387740:intron 40.0%
!! GGCTTGTTGCTTTAACCAAA+AGG + chr3_1:91807880-91807899 Msa0387740:intron 40.0%
GGATCCATCCCATGAAATAT+AGG + chr3_1:91808056-91808075 Msa0387740:intron 40.0%
! TTTGGGATATCTCTCACAAC+TGG - chr3_1:91808186-91808205 None:intergenic 40.0%
ATGATGTACCACACTTTACC+TGG + chr3_1:91808638-91808657 Msa0387740:intron 40.0%
TGAAAGTTCCAGGTAAAGTG+TGG - chr3_1:91808649-91808668 None:intergenic 40.0%
AAGTCTCACGGAACATTTGT+AGG + chr3_1:91808767-91808786 Msa0387740:intron 40.0%
!! AACTCTCAATGGCATTGACA+TGG - chr3_1:91808805-91808824 None:intergenic 40.0%
GAAAGCGACAGTGTTACAAA+TGG + chr3_1:91809093-91809112 Msa0387740:CDS 40.0%
GCTACTATGTACACGGTATT+AGG + chr3_1:91809115-91809134 Msa0387740:CDS 40.0%
ACTATGTACACGGTATTAGG+AGG + chr3_1:91809118-91809137 Msa0387740:CDS 40.0%
! GCTTTATTCTTGCGACTGAT+TGG + chr3_1:91809280-91809299 Msa0387740:intron 40.0%
! CCATAACTACTGTGGTAATG+TGG - chr3_1:91809640-91809659 None:intergenic 40.0%
CCACATTACCACAGTAGTTA+TGG + chr3_1:91809637-91809656 Msa0387740:three_prime_UTR 40.0%
AAGGAAAGCCATAACTACTG+TGG - chr3_1:91809648-91809667 None:intergenic 40.0%
!! TCCAAGTGCTGGTAATGTTT+GGG - chr3_1:91809691-91809710 None:intergenic 40.0%
!! ATCCAAGTGCTGGTAATGTT+TGG - chr3_1:91809692-91809711 None:intergenic 40.0%
!!! GTCTGTCATTTTTTCCCTCC+TGG + chr3_1:91803297-91803316 Msa0387740:five_prime_UTR 45.0%
CTCGGCTTACGAATGCATAA+TGG - chr3_1:91803953-91803972 None:intergenic 45.0%
GTCTCCACTTTATTCTCCGA+CGG - chr3_1:91804402-91804421 None:intergenic 45.0%
GGCTCAAAGCAAGCTGTTAA+TGG + chr3_1:91804429-91804448 Msa0387740:CDS 45.0%
GTCTTTGTCAATGCTGGAGT+AGG - chr3_1:91804477-91804496 None:intergenic 45.0%
CAACTGAAGCCTTCATCTGA+GGG - chr3_1:91804555-91804574 None:intergenic 45.0%
CTCAGATGAAGGCTTCAGTT+GGG + chr3_1:91804554-91804573 Msa0387740:CDS 45.0%
! TTTTCTTCTGTGAAGCCACC+CGG - chr3_1:91804681-91804700 None:intergenic 45.0%
TGGCTTCACAGAAGAAAAGC+AGG + chr3_1:91804683-91804702 Msa0387740:CDS 45.0%
GAAAACGGCTTCATGGCTAA+GGG + chr3_1:91804883-91804902 Msa0387740:CDS 45.0%
GGATGAACTCGCAAAATTGC+AGG + chr3_1:91804991-91805010 Msa0387740:CDS 45.0%
AAAGCCTCTTGCTTTCTGTG+GGG - chr3_1:91805152-91805171 None:intergenic 45.0%
CATCGTGCAATTCTGCACAA+TGG + chr3_1:91805259-91805278 Msa0387740:CDS 45.0%
GACAGGACAAGAAACTCGTT+AGG - chr3_1:91805746-91805765 None:intergenic 45.0%
! TTGGTGGTCCAACTAGAGAT+TGG + chr3_1:91805814-91805833 Msa0387740:CDS 45.0%
GGTCCAACTAGAGATTGGAT+CGG + chr3_1:91805819-91805838 Msa0387740:CDS 45.0%
!!! TCCTGCACATGCTACTTTTC+AGG + chr3_1:91806020-91806039 Msa0387740:intron 45.0%
TCCTGAAAAGTAGCATGTGC+AGG - chr3_1:91806024-91806043 None:intergenic 45.0%
GGGTGCAAATGAAGGATATG+CGG - chr3_1:91806303-91806322 None:intergenic 45.0%
! AGCTACAAGGGTGCAAATGA+AGG - chr3_1:91806311-91806330 None:intergenic 45.0%
TTCATTTGCACCCTTGTAGC+TGG + chr3_1:91806310-91806329 Msa0387740:intron 45.0%
! CACCCTTGTAGCTGGTTTAT+TGG + chr3_1:91806318-91806337 Msa0387740:intron 45.0%
!! AGCAATGAAGGTGTTGACCT+TGG + chr3_1:91806349-91806368 Msa0387740:CDS 45.0%
TTGACCTTGGAGTATGTACC+AGG + chr3_1:91806362-91806381 Msa0387740:CDS 45.0%
!! GTGGATACATTGACTTCTCG+TGG + chr3_1:91806547-91806566 Msa0387740:CDS 45.0%
TTACGACTTTGGCATGATGG+GGG + chr3_1:91806805-91806824 Msa0387740:CDS 45.0%
ACAGTTCGAGCAATCTCTCA+CGG - chr3_1:91806847-91806866 None:intergenic 45.0%
CCTCTTAGCTACCAATTCCA+GGG + chr3_1:91807233-91807252 Msa0387740:intron 45.0%
CTCTTAGCTACCAATTCCAG+GGG + chr3_1:91807234-91807253 Msa0387740:intron 45.0%
AGTAAATGTGAAAGGACCCC+TGG - chr3_1:91807253-91807272 None:intergenic 45.0%
GACAATGTCTGCTCTTGATC+TGG - chr3_1:91807510-91807529 None:intergenic 45.0%
GAGCAGACATTGTCTGCAAT+TGG + chr3_1:91807516-91807535 Msa0387740:CDS 45.0%
GCAGACATTGTCTGCAATTG+GGG + chr3_1:91807518-91807537 Msa0387740:CDS 45.0%
!! AAGGTTGATGGAAACCGGAA+TGG - chr3_1:91807663-91807682 None:intergenic 45.0%
!! AGGTGAAGGTTGATGGAAAC+CGG - chr3_1:91807668-91807687 None:intergenic 45.0%
GAAGTCCGGCATACCAAAAT+TGG + chr3_1:91807799-91807818 Msa0387740:intron 45.0%
ACAGTCTGAACCTGTGCATA+GGG - chr3_1:91808475-91808494 None:intergenic 45.0%
GGAGTTTGTGAAGCAAGTTG+AGG + chr3_1:91808836-91808855 Msa0387740:CDS 45.0%
! TTTGTGAAGCAAGTTGAGGC+AGG + chr3_1:91808840-91808859 Msa0387740:CDS 45.0%
CTACCTCTAGTACTCGAACT+CGG - chr3_1:91808878-91808897 None:intergenic 45.0%
TCTAGTCTGAAAGAGCTGCT+CGG + chr3_1:91809071-91809090 Msa0387740:intron 45.0%
! GGTGTCAATTTGACTAGCCA+AGG + chr3_1:91809157-91809176 Msa0387740:CDS 45.0%
! AATGGATCGTTTGTTGGTGC+AGG + chr3_1:91809196-91809215 Msa0387740:CDS 45.0%
TCCCAAACATTACCAGCACT+TGG + chr3_1:91809687-91809706 Msa0387740:three_prime_UTR 45.0%
AAGCAAGAACGTCCTCCTAG+TGG + chr3_1:91803259-91803278 Msa0387740:five_prime_UTR 50.0%
AGCAAGAACGTCCTCCTAGT+GGG + chr3_1:91803260-91803279 Msa0387740:five_prime_UTR 50.0%
AATGACAGACACCCTCCAAG+AGG - chr3_1:91803287-91803306 None:intergenic 50.0%
GACACCGTCGGAGAATAAAG+TGG + chr3_1:91804395-91804414 Msa0387740:CDS 50.0%
CCAACTGAAGCCTTCATCTG+AGG - chr3_1:91804556-91804575 None:intergenic 50.0%
CCTCAGATGAAGGCTTCAGT+TGG + chr3_1:91804553-91804572 Msa0387740:CDS 50.0%
GAAGGAGGAAAACGGCTTCA+TGG + chr3_1:91804876-91804895 Msa0387740:CDS 50.0%
GGAAAACGGCTTCATGGCTA+AGG + chr3_1:91804882-91804901 Msa0387740:CDS 50.0%
TTCTCCCCACAGAAAGCAAG+AGG + chr3_1:91805145-91805164 Msa0387740:CDS 50.0%
CCAATTGCTGCTGCAAGTCT+CGG + chr3_1:91805229-91805248 Msa0387740:CDS 50.0%
TTTCACGCTGATCCACATCC+TGG + chr3_1:91806746-91806765 Msa0387740:CDS 50.0%
CAGTTCGAGCAATCTCTCAC+GGG - chr3_1:91806846-91806865 None:intergenic 50.0%
GCCTCTTAGCTACCAATTCC+AGG + chr3_1:91807232-91807251 Msa0387740:intron 50.0%
! CCCTGGAATTGGTAGCTAAG+AGG - chr3_1:91807236-91807255 None:intergenic 50.0%
TGTGAAAGGACCCCTGGAAT+TGG - chr3_1:91807247-91807266 None:intergenic 50.0%
GGAGGGCTCCAAGATCAATA+AGG - chr3_1:91807313-91807332 None:intergenic 50.0%
TCTGCTCTTGATCTGGTGAC+TGG - chr3_1:91807503-91807522 None:intergenic 50.0%
GACATTGTCTGCAATTGGGG+AGG + chr3_1:91807521-91807540 Msa0387740:CDS 50.0%
TAGCACAAGACCAGCCATTC+CGG + chr3_1:91807646-91807665 Msa0387740:CDS 50.0%
TTGATGGAAACCGGAATGGC+TGG - chr3_1:91807659-91807678 None:intergenic 50.0%
AGCAACAAGCCTTCGAGCTT+AGG - chr3_1:91807871-91807890 None:intergenic 50.0%
CCTCATGAAACCGTGCAGAA+AGG - chr3_1:91807962-91807981 None:intergenic 50.0%
CCTTTCTGCACGGTTTCATG+AGG + chr3_1:91807959-91807978 Msa0387740:intron 50.0%
GACAGTCTGAACCTGTGCAT+AGG - chr3_1:91808476-91808495 None:intergenic 50.0%
ACTCCGAGTTCGAGTACTAG+AGG + chr3_1:91808872-91808891 Msa0387740:CDS 50.0%
CGAGTTCGAGTACTAGAGGT+AGG + chr3_1:91808876-91808895 Msa0387740:intron 50.0%
!! TTGCAGGGTGTTGACACTGT+AGG + chr3_1:91809510-91809529 Msa0387740:three_prime_UTR 50.0%
! TCCTAGTGGGTCCTCTTGGA+GGG + chr3_1:91803273-91803292 Msa0387740:five_prime_UTR 55.0%
GCAAAATGGGCATATCCGGG+TGG + chr3_1:91804663-91804682 Msa0387740:CDS 55.0%
GCTTTCTGTGGGGAGAAAGC+AGG - chr3_1:91805142-91805161 None:intergenic 55.0%
CCGAGACTTGCAGCAGCAAT+TGG - chr3_1:91805232-91805251 None:intergenic 55.0%
CCTTACAGCTGACAGATCCC+CGG - chr3_1:91807342-91807361 None:intergenic 55.0%
AAGGTCAACCCACCGAAGTC+CGG + chr3_1:91807785-91807804 Msa0387740:intron 55.0%
TTGGTATGCCGGACTTCGGT+GGG - chr3_1:91807796-91807815 None:intergenic 55.0%
TTTGGTATGCCGGACTTCGG+TGG - chr3_1:91807797-91807816 None:intergenic 55.0%
TCTAGCGTAGGGTGACACCA+AGG - chr3_1:91808216-91808235 None:intergenic 55.0%
GATTGCTGCACCCTATGCAC+AGG + chr3_1:91808462-91808481 Msa0387740:CDS 55.0%
ATAAGGCAACGACAGCCCAC+AGG + chr3_1:91808580-91808599 Msa0387740:CDS 55.0%
TAAGGCAACGACAGCCCACA+GGG + chr3_1:91808581-91808600 Msa0387740:CDS 55.0%
GCACTGCAAGATCCAAGTGC+TGG - chr3_1:91809702-91809721 None:intergenic 55.0%
! GTCCTCCTAGTGGGTCCTCT+TGG + chr3_1:91803269-91803288 Msa0387740:five_prime_UTR 60.0%
CTCCAAGAGGACCCACTAGG+AGG - chr3_1:91803274-91803293 None:intergenic 60.0%
! CTCCTAGTGGGTCCTCTTGG+AGG + chr3_1:91803272-91803291 Msa0387740:five_prime_UTR 60.0%
ACCCTCCAAGAGGACCCACT+AGG - chr3_1:91803277-91803296 None:intergenic 60.0%
TGCTGCTGCAAGTCTCGGTC+AGG + chr3_1:91805234-91805253 Msa0387740:CDS 60.0%
ACAGCTGACAGATCCCCGGT+GGG - chr3_1:91807338-91807357 None:intergenic 60.0%
TACAGCTGACAGATCCCCGG+TGG - chr3_1:91807339-91807358 None:intergenic 60.0%
CCGGGGATCTGTCAGCTGTA+AGG + chr3_1:91807339-91807358 Msa0387740:intron 60.0%
GCTATCTGCCCGACGAGTTG+TGG - chr3_1:91808607-91808626 None:intergenic 60.0%
CTTGGAGCCCTCCAACCCAC+CGG + chr3_1:91807320-91807339 Msa0387740:CDS 65.0%
TTGGAGCCCTCCAACCCACC+GGG + chr3_1:91807321-91807340 Msa0387740:CDS 65.0%
!! CAGATCCCCGGTGGGTTGGA+GGG - chr3_1:91807330-91807349 None:intergenic 65.0%
!! ACAGATCCCCGGTGGGTTGG+AGG - chr3_1:91807331-91807350 None:intergenic 65.0%
CTGACAGATCCCCGGTGGGT+TGG - chr3_1:91807334-91807353 None:intergenic 65.0%
CCGACGAGTTGTGGCCCTGT+GGG - chr3_1:91808598-91808617 None:intergenic 65.0%
CCCACAGGGCCACAACTCGT+CGG + chr3_1:91808595-91808614 Msa0387740:CDS 65.0%
CCACAGGGCCACAACTCGTC+GGG + chr3_1:91808596-91808615 Msa0387740:CDS 65.0%
TGGAGCCCTCCAACCCACCG+GGG + chr3_1:91807322-91807341 Msa0387740:CDS 70.0%
CCCGACGAGTTGTGGCCCTG+TGG - chr3_1:91808599-91808618 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 91803136 91809728 91803136 ID=Msa0387740;Name=Msa0387740
chr3_1 mRNA 91803136 91809728 91803136 ID=Msa0387740-mRNA-1;Parent=Msa0387740;Name=Msa0387740-mRNA-1;_AED=0.08;_eAED=0.08;_QI=198|1|1|1|0.93|0.88|17|331|708
chr3_1 exon 91803136 91803318 91803136 ID=Msa0387740-mRNA-1:exon:25677;Parent=Msa0387740-mRNA-1
chr3_1 exon 91804111 91804704 91804111 ID=Msa0387740-mRNA-1:exon:25678;Parent=Msa0387740-mRNA-1
chr3_1 exon 91804869 91805012 91804869 ID=Msa0387740-mRNA-1:exon:25679;Parent=Msa0387740-mRNA-1
chr3_1 exon 91805130 91805343 91805130 ID=Msa0387740-mRNA-1:exon:25680;Parent=Msa0387740-mRNA-1
chr3_1 exon 91805769 91805862 91805769 ID=Msa0387740-mRNA-1:exon:25681;Parent=Msa0387740-mRNA-1
chr3_1 exon 91806042 91806135 91806042 ID=Msa0387740-mRNA-1:exon:25682;Parent=Msa0387740-mRNA-1
chr3_1 exon 91806329 91806383 91806329 ID=Msa0387740-mRNA-1:exon:25683;Parent=Msa0387740-mRNA-1
chr3_1 exon 91806530 91806621 91806530 ID=Msa0387740-mRNA-1:exon:25684;Parent=Msa0387740-mRNA-1
chr3_1 exon 91806728 91806898 91806728 ID=Msa0387740-mRNA-1:exon:25685;Parent=Msa0387740-mRNA-1
chr3_1 exon 91807299 91807355 91807299 ID=Msa0387740-mRNA-1:exon:25686;Parent=Msa0387740-mRNA-1
chr3_1 exon 91807459 91807542 91807459 ID=Msa0387740-mRNA-1:exon:25687;Parent=Msa0387740-mRNA-1
chr3_1 exon 91807633 91807717 91807633 ID=Msa0387740-mRNA-1:exon:25688;Parent=Msa0387740-mRNA-1
chr3_1 exon 91808422 91808483 91808422 ID=Msa0387740-mRNA-1:exon:25689;Parent=Msa0387740-mRNA-1
chr3_1 exon 91808568 91808642 91808568 ID=Msa0387740-mRNA-1:exon:25690;Parent=Msa0387740-mRNA-1
chr3_1 exon 91808789 91808893 91808789 ID=Msa0387740-mRNA-1:exon:25691;Parent=Msa0387740-mRNA-1
chr3_1 exon 91809076 91809217 91809076 ID=Msa0387740-mRNA-1:exon:25692;Parent=Msa0387740-mRNA-1
chr3_1 exon 91809324 91809728 91809324 ID=Msa0387740-mRNA-1:exon:25693;Parent=Msa0387740-mRNA-1
chr3_1 five_prime_UTR 91803136 91803318 91803136 ID=Msa0387740-mRNA-1:five_prime_utr;Parent=Msa0387740-mRNA-1
chr3_1 five_prime_UTR 91804111 91804125 91804111 ID=Msa0387740-mRNA-1:five_prime_utr;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91804126 91804704 91804126 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91804869 91805012 91804869 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91805130 91805343 91805130 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91805769 91805862 91805769 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91806042 91806135 91806042 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91806329 91806383 91806329 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91806530 91806621 91806530 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91806728 91806898 91806728 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91807299 91807355 91807299 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91807459 91807542 91807459 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91807633 91807717 91807633 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91808422 91808483 91808422 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91808568 91808642 91808568 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91808789 91808893 91808789 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91809076 91809217 91809076 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 CDS 91809324 91809397 91809324 ID=Msa0387740-mRNA-1:cds;Parent=Msa0387740-mRNA-1
chr3_1 three_prime_UTR 91809398 91809728 91809398 ID=Msa0387740-mRNA-1:three_prime_utr;Parent=Msa0387740-mRNA-1
Gene Sequence

>Msa0387740

ATGGCAGTAATAATGGCTTTGCATGGTTGTTATTGTAACAATATAGAATCGGTAAATCAGCGAAGATCACTAGACAATCTTGGTTTTACAAGCTCAATTTCATCTCATAAATTGTCAAAGAATGAAAGGTCAACATCTGATAAGTTAAAGAGTGGTAAATTTCGTAGATTTGTGGTGGAAATGCGACAGACAGAAATGCCGCCATCAAAATTAGGTAATAATGGTAGAGCTGTTAAAATGGTACCGGCAACTGAGATAGCAAAAAGAAAGACACCGTCGGAGAATAAAGTGGAGACAGTCAATGGCTCAAAGCAAGCTGTTAATGGAGCAAGTTTGGTAAGAAGAGATCCTACTCCAGCATTGACAAAGACAACGAAACCTACAATCTCCAATGAACTTCCACCACTTGAAGAGCTAAAAGTTTTGCCCTCAGATGAAGGCTTCAGTTGGGCCAATGAAAATTACAGTTCCTGGCAGAGATCAATTGATGTATGGTCCTTTGTTCTTTCTTTACGTGTCCGTGTTCTTTTCGACAATGCAAAATGGGCATATCCGGGTGGCTTCACAGAAGAAAAGCAGATAAGCAGAAGGAGGAAAACGGCTTCATGGCTAAGGGAATCTGTATTACAGCTCGGTCCAACTTTTATTAAACTTGGACAGTTATCATCAACAAGGTCAGATCTATTTCCCCGTGAATTTGTGGATGAACTCGCAAAATTGCAGGACAAGGTACCTGCTTTCTCCCCACAGAAAGCAAGAGGCTTTATTGAGAGTGAATTAGGAGCTCCCATTAATGAATTGTTTAAAGAGTTTGAAGATCGGCCAATTGCTGCTGCAAGTCTCGGTCAGGTTCATCGTGCAATTCTGCACAATGGAGAAAAAGTAGTTATCAAAGTTCAAAGGCCTGGTTTGAAGAAGCTTTTTGACATTGACTTGCAAAACTTAAAGCTGATCGCGGAGTATTTTCAGAGAAGTGAAACTTTTGGTGGTCCAACTAGAGATTGGATCGGTATTTATGAAGAATGTGCAACGATTTTATACCAAGAAATTGATTATATAAATGAAGGGAAGAATGCTGATAGGTTCCGTCGTGATTTTCGAAACATAAAGTGGGTCCGAGTACCTCTGGTTTATTGGGATTATACAGCAATGAAGGTGTTGACCTTGGAGTATGTACCAGGTATTAAAATAAATCAAGTGGATACATTGACTTCTCGTGGTTATGATCGATTGAGAATCTCATCACGTGCTATTGAGGCGTACTTGATTCAGATATTGAAAACAGGTTTCTTTCACGCTGATCCACATCCTGGAAATCTTGCTATTGATGTTGATGAATCAATTATTTATTACGACTTTGGCATGATGGGGGAGATAAAATCTTTCACCCGTGAGAGATTGCTCGAACTGTTTTATTCCGTTTATGAGAAGGATGCCAAAAAGGTTATTCAATGCCTTATTGATCTTGGAGCCCTCCAACCCACCGGGGATCTGTCAGCTGTGAGGAGATCTGTACAATTTTTCTTGGACAATCTTCTAAACCAGTCACCAGATCAAGAGCAGACATTGTCTGCAATTGGGGAGGATTTGTTTGCAATAGCACAAGACCAGCCATTCCGGTTTCCATCAACCTTCACCTTTGTTATTAGAGCATTTTCTACACTTGAAGGCATAGGATACACACTCACTCCAGATTTCTCATTTGTGAAGATTGCTGCACCCTATGCACAGGAACTTCTAGATATAAGGCAACGACAGCCCACAGGGCCACAACTCGTCGGGCAGATAGCAAAACAAGCAAATGATGTAAGAACAAATTCCATGTCAATGCCATTGAGAGTTCAAAGAATAGAGGAGTTTGTGAAGCAAGTTGAGGCAGGAGATCTGAAACTCCGAGTTCGAGTACTAGAGTCTGAAAGAGCTGCTCGGAAAGCGACAGTGTTACAAATGGCTACTATGTACACGGTATTAGGAGGAACCTTTCTAAATATTGGTGTCAATTTGACTAGCCAAGGCAATCAAACTTTTGCAAATGGATCGTTTGTTGGTGCAGGTATTTTGTTCATACTATTCTTACGGTCTATGCAAAGGGTACAGAAGCTTGACAAGTTTGAGAAAATGTTATAA
Protein sequence

>Msa0387740

MAVIMALHGCYCNNIESVNQRRSLDNLGFTSSISSHKLSKNERSTSDKLKSGKFRRFVVEMRQTEMPPSKLGNNGRAVKMVPATEIAKRKTPSENKVETVNGSKQAVNGASLVRRDPTPALTKTTKPTISNELPPLEELKVLPSDEGFSWANENYSSWQRSIDVWSFVLSLRVRVLFDNAKWAYPGGFTEEKQISRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDKVPAFSPQKARGFIESELGAPINELFKEFEDRPIAAASLGQVHRAILHNGEKVVIKVQRPGLKKLFDIDLQNLKLIAEYFQRSETFGGPTRDWIGIYEECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVYWDYTAMKVLTLEYVPGIKINQVDTLTSRGYDRLRISSRAIEAYLIQILKTGFFHADPHPGNLAIDVDESIIYYDFGMMGEIKSFTRERLLELFYSVYEKDAKKVIQCLIDLGALQPTGDLSAVRRSVQFFLDNLLNQSPDQEQTLSAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGYTLTPDFSFVKIAAPYAQELLDIRQRQPTGPQLVGQIAKQANDVRTNSMSMPLRVQRIEEFVKQVEAGDLKLRVRVLESERAARKATVLQMATMYTVLGGTFLNIGVNLTSQGNQTFANGSFVGAGILFILFLRSMQRVQKLDKFEKML*