AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0229750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229750 MtrunA17_Chr3g0120791 97.599 708 17 0 1 708 1 708 0.0 1422
Msa0229750 MtrunA17_Chr3g0129101 46.281 605 284 9 138 708 143 740 0.0 538
Msa0229750 MtrunA17_Chr8g0382921 43.964 671 325 11 72 708 78 731 0.0 538
Msa0229750 MtrunA17_Chr3g0136721 37.692 390 226 4 198 575 132 516 7.81e-79 266
Msa0229750 MtrunA17_Chr4g0012061 35.128 390 240 5 197 580 148 530 1.16e-69 241
Msa0229750 MtrunA17_Chr6g0465161 35.904 376 228 4 201 575 129 492 1.22e-67 236
Msa0229750 MtrunA17_Chr7g0230671 30.196 510 333 8 73 580 30 518 7.99e-67 233
Msa0229750 MtrunA17_Chr1g0169361 33.638 437 264 8 150 580 142 558 6.97e-64 226
Msa0229750 MtrunA17_Chr1g0148121 34.109 387 241 5 201 580 131 510 5.90e-59 211
Msa0229750 MtrunA17_Chr1g0199921 29.481 424 283 4 204 614 203 623 1.10e-50 189
Msa0229750 MtrunA17_Chr1g0147481 26.503 449 285 9 168 580 86 525 2.27e-43 168
Msa0229750 MtrunA17_Chr8g0360981 31.003 329 191 8 198 497 203 524 1.82e-38 151
Msa0229750 MtrunA17_Chr5g0433911 30.072 276 178 5 215 483 77 344 1.19e-37 147
Msa0229750 MtrunA17_Chr3g0113361 27.073 410 261 8 185 563 69 471 2.54e-37 147
Msa0229750 MtrunA17_Chr4g0057941 26.782 463 265 14 154 580 26 450 1.51e-36 143
Msa0229750 MtrunA17_Chr4g0048521 29.909 331 200 8 203 506 217 542 7.66e-35 140
Msa0229750 MtrunA17_Chr5g0428451 25.126 398 263 6 203 570 127 519 9.91e-33 133
Msa0229750 MtrunA17_Chr2g0281061 29.206 315 194 7 203 493 214 523 3.18e-32 132
Msa0229750 MtrunA17_Chr1g0193751 28.947 304 192 8 199 492 225 514 4.30e-22 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229750 AT3G07700.1 74.370 714 158 9 1 708 1 695 0.0 1079
Msa0229750 AT3G07700.2 74.370 714 158 9 1 708 1 695 0.0 1079
Msa0229750 AT3G07700.4 74.370 714 158 9 1 708 1 695 0.0 1079
Msa0229750 AT3G07700.3 71.467 743 158 10 1 708 1 724 0.0 1064
Msa0229750 AT5G64940.1 45.634 607 287 8 138 708 158 757 4.58e-179 530
Msa0229750 AT5G64940.2 45.634 607 287 8 138 708 158 757 4.58e-179 530
Msa0229750 AT5G24970.3 35.088 399 231 4 198 575 134 525 6.21e-73 251
Msa0229750 AT5G24970.2 35.088 399 231 4 198 575 173 564 2.20e-72 250
Msa0229750 AT1G79600.1 34.815 405 251 5 186 580 124 525 6.11e-70 242
Msa0229750 AT1G71810.1 36.170 376 227 4 201 575 120 483 2.17e-69 240
Msa0229750 AT5G24970.1 34.336 399 231 5 198 575 134 522 1.26e-68 239
Msa0229750 AT3G24190.1 34.430 395 244 6 189 580 184 566 2.00e-61 220
Msa0229750 AT4G31390.1 33.333 387 244 5 201 580 167 546 6.41e-57 206
Msa0229750 AT2G39190.2 30.380 395 252 4 204 580 202 591 9.08e-51 190
Msa0229750 AT4G31390.3 32.768 354 224 5 234 580 1 347 1.69e-48 178
Msa0229750 AT4G31390.2 31.266 387 227 6 201 580 167 521 4.12e-47 177
Msa0229750 AT4G24810.2 27.766 461 302 10 146 589 15 461 2.88e-42 160
Msa0229750 AT5G50330.1 28.761 452 286 10 152 580 14 452 7.83e-42 159
Msa0229750 AT5G24810.1 27.706 462 280 11 168 588 60 508 6.09e-41 161
Msa0229750 AT4G24810.6 29.008 393 259 7 211 589 32 418 8.32e-41 155
Msa0229750 AT4G24810.1 29.008 393 259 7 211 589 32 418 8.32e-41 155
Msa0229750 AT1G65950.2 30.657 274 177 6 215 482 113 379 3.91e-39 151
Msa0229750 AT4G24810.3 28.750 400 258 8 211 589 32 425 6.89e-39 150
Msa0229750 AT1G65950.1 30.657 274 177 6 215 482 113 379 2.53e-38 150
Msa0229750 AT4G24810.4 31.724 290 179 6 211 486 32 316 1.55e-37 143
Msa0229750 AT5G24810.2 26.369 493 278 13 168 588 60 539 4.46e-37 149
Msa0229750 AT4G24810.5 33.209 268 160 6 211 464 32 294 1.52e-36 140
Msa0229750 AT5G50330.2 26.829 451 280 10 152 580 14 436 5.36e-34 136
Msa0229750 AT5G05200.1 24.879 414 276 6 186 570 113 520 5.41e-34 137
Msa0229750 AT2G40090.1 28.617 311 200 5 199 491 87 393 1.78e-32 133
Msa0229750 AT1G11390.1 28.125 352 216 9 187 508 198 542 7.35e-32 132
Msa0229750 AT1G61640.3 28.267 329 202 10 204 506 213 533 1.21e-28 122
Msa0229750 AT1G61640.1 28.267 329 202 10 204 506 213 533 1.39e-28 122
Msa0229750 AT2G39190.1 36.250 160 99 1 204 363 202 358 1.59e-22 100
Msa0229750 AT4G01660.1 27.778 306 211 5 198 501 222 519 3.60e-22 102
Msa0229750 AT1G61640.2 30.049 203 124 6 204 394 213 409 6.59e-18 87.8

Find 183 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCCTTGTAGCTGGTTTAT+TGG 0.177430 2_2:-1585987 Msa0229750:intron
CTCTTTAAACAATTCATTAA+TGG 0.177743 2_2:+1587111 None:intergenic
CATTTATATAATCAATTTCT+TGG 0.199717 2_2:+1586254 None:intergenic
AGCCATTATTACTGCCATTT+AGG 0.200934 2_2:+1588184 None:intergenic
TACAGGAACTTCTAGATATA+AGG 0.236116 2_2:-1583742 Msa0229750:intron
GGAGGAACCTTTCTAAATAT+TGG 0.238190 2_2:-1583169 Msa0229750:CDS
ATAGGTATCATTACCCTAAA+TGG 0.241840 2_2:-1588198 Msa0229750:intron
GGCTTTATTGAGAGTGAATT+AGG 0.254061 2_2:-1587139 Msa0229750:CDS
ACCCTTGTAGCTGGTTTATT+GGG 0.269755 2_2:-1585986 Msa0229750:intron
GCCATTATTACTGCCATTTA+GGG 0.276747 2_2:+1588185 None:intergenic
GGCTCAAAGCAAGCTGTTAA+TGG 0.283062 2_2:-1587876 Msa0229750:CDS
ATTCAATGCCTTATTGATCT+TGG 0.300157 2_2:-1585003 Msa0229750:CDS
TATTGAGGCGTACTTGATTC+AGG 0.305517 2_2:-1585705 Msa0229750:intron
AAGAAAATGTCATTGTTTAG+AGG 0.325510 2_2:-1582750 Msa0229750:three_prime_UTR
GAAATGCCGCCATCAAAATT+AGG 0.325630 2_2:-1587987 Msa0229750:CDS
CCACATTACCACAGTAGTTA+TGG 0.329310 2_2:-1582668 Msa0229750:three_prime_UTR
ACCCTAAATGGCAGTAATAA+TGG 0.329958 2_2:-1588186 Msa0229750:exon
TCTTTAAACAATTCATTAAT+GGG 0.331071 2_2:+1587112 None:intergenic
GCTACTATGTACACGGTATT+AGG 0.336158 2_2:-1583190 Msa0229750:CDS
ATCCAAGTGCTGGTAATGTT+TGG 0.338580 2_2:+1582616 None:intergenic
AGCTGTTAATGGAGCAAGTT+TGG 0.341642 2_2:-1587865 Msa0229750:CDS
CAATGCAAAATGGGCATATC+CGG 0.342054 2_2:-1587646 Msa0229750:CDS
GAGCAGACATTGTCTGCAAT+TGG 0.346799 2_2:-1584789 Msa0229750:CDS
TTCGTTGTCTTTGTCAATGC+TGG 0.352992 2_2:+1587825 None:intergenic
TTTCATATACAATAAGGAAT+TGG 0.380190 2_2:+1582889 None:intergenic
CCAATGAAAATTACAGTTCC+TGG 0.383016 2_2:-1587728 Msa0229750:CDS
TTCAAGTGGTGGAAGTTCAT+TGG 0.384033 2_2:+1587791 None:intergenic
TCCAAGTGCTGGTAATGTTT+GGG 0.384889 2_2:+1582617 None:intergenic
TAATGGTAGAGCTGTTAAAA+TGG 0.385147 2_2:-1587961 Msa0229750:CDS
TCAATTATTTATTACGACTT+TGG 0.385780 2_2:-1585511 Msa0229750:CDS
CCATCAAAATTAGGTAATAA+TGG 0.389209 2_2:-1587978 Msa0229750:CDS
TAAGGAATTGGATATTTGTT+GGG 0.389619 2_2:+1582901 None:intergenic
TACGGTATAAACACGACAAA+AGG 0.394062 2_2:+1589163 None:intergenic
TTTGGCATCCTTCTCATAAA+CGG 0.395475 2_2:+1585432 None:intergenic
ACAGATCCCCGGTGGGTTGG+AGG 0.397963 2_2:+1584977 None:intergenic
AGCAGACATTGTCTGCAATT+GGG 0.399926 2_2:-1584788 Msa0229750:CDS
TCTATTTCCCCGTGAATTTG+TGG 0.401899 2_2:-1587335 Msa0229750:CDS
ATCTTCACAAATGAGAAATC+TGG 0.404363 2_2:+1583863 None:intergenic
TTTCAGAGAAGTGAAACTTT+TGG 0.408412 2_2:-1586510 Msa0229750:CDS
ATAAGGAATTGGATATTTGT+TGG 0.411963 2_2:+1582900 None:intergenic
TTGGTGGTCCAACTAGAGAT+TGG 0.412828 2_2:-1586491 Msa0229750:CDS
ATAACAAAGGTGAAGGTTGA+TGG 0.416877 2_2:+1584633 None:intergenic
CGAAGATCACTAGACAATCT+TGG 0.421184 2_2:-1588119 Msa0229750:CDS
CCGAGACTTGCAGCAGCAAT+TGG 0.421258 2_2:+1587076 None:intergenic
ACATCAATAGCAAGATTTCC+AGG 0.425680 2_2:+1585541 None:intergenic
GTCCTCCTAGTGGGTCCTCT+TGG 0.429327 2_2:-1589044 Msa0229750:five_prime_UTR
GGAAGTTCATTGGAGATTGT+AGG 0.432975 2_2:+1587801 None:intergenic
GACAATGTCTGCTCTTGATC+TGG 0.434915 2_2:+1584798 None:intergenic
ATTGACACCAATATTTAGAA+AGG 0.438522 2_2:+1583162 None:intergenic
TAGCACAAGACCAGCCATTC+CGG 0.440262 2_2:-1584659 Msa0229750:CDS
TTTCACGCTGATCCACATCC+TGG 0.442896 2_2:-1585559 Msa0229750:CDS
CTCCTAGTGGGTCCTCTTGG+AGG 0.443022 2_2:-1589041 Msa0229750:five_prime_UTR
TTGCAAAAGTTTGATTGCCT+TGG 0.444011 2_2:+1583131 None:intergenic
GAAGGAGGAAAACGGCTTCA+TGG 0.444251 2_2:-1587429 Msa0229750:CDS
TGTCCAAGTTTAATAAAAGT+TGG 0.444282 2_2:+1587379 None:intergenic
TCTATTCTTTGAACTCTCAA+TGG 0.445983 2_2:+1583492 None:intergenic
GAAATTGATTATATAAATGA+AGG 0.452977 2_2:-1586250 Msa0229750:CDS
TTATGAGAAGGATGCCAAAA+AGG 0.452978 2_2:-1585428 Msa0229750:intron
AGGTGAAGGTTGATGGAAAC+CGG 0.458214 2_2:+1584640 None:intergenic
GGAGGGCTCCAAGATCAATA+AGG 0.466597 2_2:+1584995 None:intergenic
TATTACGACTTTGGCATGAT+GGG 0.468315 2_2:-1585502 Msa0229750:CDS
CCAATTGCTGCTGCAAGTCT+CGG 0.469478 2_2:-1587076 Msa0229750:CDS
GGATGAACTCGCAAAATTGC+AGG 0.471584 2_2:-1587314 Msa0229750:intron
TGCTGCTGCAAGTCTCGGTC+AGG 0.471750 2_2:-1587071 Msa0229750:CDS
CCACAGGGCCACAACTCGTC+GGG 0.471887 2_2:-1583709 Msa0229750:CDS
GTGTTACAGATATTGAAAAC+AGG 0.473505 2_2:-1585586 Msa0229750:intron
CCTCAGATGAAGGCTTCAGT+TGG 0.474873 2_2:-1587752 Msa0229750:CDS
TTGGGATTATACAGCAATGA+AGG 0.474937 2_2:-1585968 Msa0229750:CDS
TCTTGCTTCCACGTTACAAA+AGG 0.479209 2_2:+1589069 None:intergenic
CGAGTTCATCCACAAATTCA+CGG 0.480904 2_2:+1587326 None:intergenic
TTTGCAAATGGATCGTTTGT+TGG 0.485361 2_2:-1583115 Msa0229750:CDS
TCTGCTCTTGATCTGGTGAC+TGG 0.488384 2_2:+1584805 None:intergenic
AGAAAATGTCATTGTTTAGA+GGG 0.490479 2_2:-1582749 Msa0229750:three_prime_UTR
CAGATCCCCGGTGGGTTGGA+GGG 0.491136 2_2:+1584978 None:intergenic
ATTCTTACGGTCTATGCAAA+GGG 0.493150 2_2:-1582965 Msa0229750:CDS
TCCTAGTGGGTCCTCTTGGA+GGG 0.493209 2_2:-1589040 Msa0229750:five_prime_UTR
TTTGTGAAGCAAGTTGAGGC+AGG 0.494683 2_2:-1583465 Msa0229750:CDS
GTTATCAAAGTTCAAAGGCC+TGG 0.495296 2_2:-1587013 Msa0229750:CDS
GGAAAACGGCTTCATGGCTA+AGG 0.498904 2_2:-1587423 Msa0229750:CDS
GATAAGCAGAAGGAGGAAAA+CGG 0.502499 2_2:-1587437 Msa0229750:CDS
TAAAGCCTCTTGCTTTCTGT+GGG 0.502807 2_2:+1587155 None:intergenic
GCTATCTGCCCGACGAGTTG+TGG 0.508655 2_2:+1583701 None:intergenic
TTGATGGAAACCGGAATGGC+TGG 0.509916 2_2:+1584649 None:intergenic
TCCCAAACATTACCAGCACT+TGG 0.511999 2_2:-1582618 Msa0229750:three_prime_UTR
TTAAATTATGCAAGAGTACA+AGG 0.512450 2_2:+1582641 None:intergenic
ATGAAGGGAAGAATGCTGAT+AGG 0.512805 2_2:-1586234 Msa0229750:CDS
CTGACAGATCCCCGGTGGGT+TGG 0.513021 2_2:+1584974 None:intergenic
TGGTAAATTTCGTAGATTTG+TGG 0.513813 2_2:-1588027 Msa0229750:CDS
CTTGGAGCCCTCCAACCCAC+CGG 0.514456 2_2:-1584985 Msa0229750:CDS
ACAGTCTGAACCTGTGCATA+GGG 0.514489 2_2:+1583833 None:intergenic
AATCTCATCACGTGCTATTG+AGG 0.516579 2_2:-1585720 Msa0229750:CDS
TTGGAGCCCTCCAACCCACC+GGG 0.517854 2_2:-1584984 Msa0229750:CDS
AATGGATCGTTTGTTGGTGC+AGG 0.519200 2_2:-1583109 Msa0229750:intron
GCTTTCTGTGGGGAGAAAGC+AGG 0.519217 2_2:+1587166 None:intergenic
CCGACGAGTTGTGGCCCTGT+GGG 0.519502 2_2:+1583710 None:intergenic
ATAGCAAGATTTCCAGGATG+TGG 0.519629 2_2:+1585547 None:intergenic
GGCAGAGATCAATTGATGTA+TGG 0.520886 2_2:-1587707 Msa0229750:CDS
ATTGAGAGTTCAAAGAATAG+AGG 0.523885 2_2:-1583490 Msa0229750:CDS
CTCAGATGAAGGCTTCAGTT+GGG 0.526088 2_2:-1587751 Msa0229750:CDS
ATACCGATCCAATCTCTAGT+TGG 0.528498 2_2:+1586483 None:intergenic
TTATTGTAACAATATAGAAT+CGG 0.529878 2_2:-1588150 Msa0229750:CDS
GAGTTCATCCACAAATTCAC+GGG 0.530269 2_2:+1587327 None:intergenic
TTATTACGACTTTGGCATGA+TGG 0.530731 2_2:-1585503 Msa0229750:CDS
TAAATTTCGTAGATTTGTGG+TGG 0.532222 2_2:-1588024 Msa0229750:CDS
TTGACCTTGGAGTATGTACC+AGG 0.532309 2_2:-1585943 Msa0229750:intron
GTCTCCACTTTATTCTCCGA+CGG 0.532763 2_2:+1587906 None:intergenic
GCAGACATTGTCTGCAATTG+GGG 0.533585 2_2:-1584787 Msa0229750:CDS
GTCTTTGTCAATGCTGGAGT+AGG 0.534650 2_2:+1587831 None:intergenic
ATAAAGCCTCTTGCTTTCTG+TGG 0.536314 2_2:+1587154 None:intergenic
AACTCTCAATGGCATTGACA+TGG 0.538554 2_2:+1583503 None:intergenic
ACGGTATAAACACGACAAAA+GGG 0.539286 2_2:+1589164 None:intergenic
GGTGTCAATTTGACTAGCCA+AGG 0.544223 2_2:-1583148 Msa0229750:CDS
TTCTCCCCACAGAAAGCAAG+AGG 0.547830 2_2:-1587160 Msa0229750:CDS
TGCTCTAATAACAAAGGTGA+AGG 0.550545 2_2:+1584626 None:intergenic
AGCAATGAAGGTGTTGACCT+TGG 0.557273 2_2:-1585956 Msa0229750:CDS
CCAACTGAAGCCTTCATCTG+AGG 0.557528 2_2:+1587752 None:intergenic
ATAAATTGTCAAAGAATGAA+AGG 0.558325 2_2:-1588073 Msa0229750:CDS
CAACTGAAGCCTTCATCTGA+GGG 0.559152 2_2:+1587753 None:intergenic
AATGCAAAATGGGCATATCC+GGG 0.559374 2_2:-1587645 Msa0229750:CDS
TATTCTTACGGTCTATGCAA+AGG 0.560981 2_2:-1582966 Msa0229750:CDS
GAAAGCGACAGTGTTACAAA+TGG 0.563568 2_2:-1583212 Msa0229750:CDS
AATAAAGTGGAGACAGTCAA+TGG 0.564916 2_2:-1587897 Msa0229750:CDS
GACAGTCTGAACCTGTGCAT+AGG 0.566917 2_2:+1583832 None:intergenic
CAGTTCGAGCAATCTCTCAC+GGG 0.571404 2_2:+1585462 None:intergenic
ATTACGACTTTGGCATGATG+GGG 0.574785 2_2:-1585501 Msa0229750:CDS
GCACTGCAAGATCCAAGTGC+TGG 0.577661 2_2:+1582606 None:intergenic
TAGAGCTGTTAAAATGGTAC+CGG 0.578175 2_2:-1587955 Msa0229750:CDS
TACATCAATTGATCTCTGCC+AGG 0.581512 2_2:+1587710 None:intergenic
AGGTATTAAAATAAATCAAG+TGG 0.581716 2_2:-1585777 Msa0229750:CDS
ACAAAAGGTGTAAGAACAAG+TGG 0.584929 2_2:+1589084 None:intergenic
CCATAACTACTGTGGTAATG+TGG 0.585094 2_2:+1582668 None:intergenic
TGGCTTCACAGAAGAAAAGC+AGG 0.586577 2_2:-1587622 Msa0229750:intron
CAAGTGGTTGAACTTGAACA+TGG 0.587413 2_2:+1589100 None:intergenic
ATAAGGCAACGACAGCCCAC+AGG 0.588619 2_2:-1583725 Msa0229750:CDS
AGCAAGAACGTCCTCCTAGT+GGG 0.590428 2_2:-1589053 Msa0229750:five_prime_UTR
GACACCGTCGGAGAATAAAG+TGG 0.590443 2_2:-1587910 Msa0229750:CDS
ACAGTTCGAGCAATCTCTCA+CGG 0.590615 2_2:+1585461 None:intergenic
CCCACAGGGCCACAACTCGT+CGG 0.591725 2_2:-1583710 Msa0229750:CDS
GATTGCTGCACCCTATGCAC+AGG 0.591848 2_2:-1583843 Msa0229750:intron
TCTAGTCTGAAAGAGCTGCT+CGG 0.594593 2_2:-1583234 Msa0229750:intron
GTGGATACATTGACTTCTCG+TGG 0.595263 2_2:-1585758 Msa0229750:CDS
ACTATGTACACGGTATTAGG+AGG 0.601581 2_2:-1583187 Msa0229750:CDS
GTATAGCTTATATGTGTAAG+CGG 0.602317 2_2:+1582840 None:intergenic
CCCGACGAGTTGTGGCCCTG+TGG 0.603360 2_2:+1583709 None:intergenic
TGTTTAAAGAGTTTGAAGAT+CGG 0.606621 2_2:-1587099 Msa0229750:CDS
AAGTAGTTATCAAAGTTCAA+AGG 0.613460 2_2:-1587018 Msa0229750:CDS
AGGGAATCTGTATTACAGCT+CGG 0.617183 2_2:-1587403 Msa0229750:CDS
AGAAAATGCTCTAATAACAA+AGG 0.622886 2_2:+1584620 None:intergenic
CCTTACAGCTGACAGATCCC+CGG 0.625234 2_2:+1584966 None:intergenic
TACAGCTGACAGATCCCCGG+TGG 0.626173 2_2:+1584969 None:intergenic
AAATTGATTATATAAATGAA+GGG 0.628702 2_2:-1586249 Msa0229750:CDS
CTACCTCTAGTACTCGAACT+CGG 0.632492 2_2:+1583430 None:intergenic
GAAAGAAACATACAGGTACT+CGG 0.633321 2_2:+1586179 None:intergenic
TTGCAGGGTGTTGACACTGT+AGG 0.636866 2_2:-1582795 Msa0229750:three_prime_UTR
ACATCTGATAAGTTAAAGAG+TGG 0.637198 2_2:-1588047 Msa0229750:CDS
TTACGACTTTGGCATGATGG+GGG 0.641403 2_2:-1585500 Msa0229750:CDS
CTCCAAGAGGACCCACTAGG+AGG 0.641568 2_2:+1589042 None:intergenic
ATAACCTGGTACATACTCCA+AGG 0.642881 2_2:+1585939 None:intergenic
ACTCCGAGTTCGAGTACTAG+AGG 0.643048 2_2:-1583433 Msa0229750:intron
GACATTGTCTGCAATTGGGG+AGG 0.644164 2_2:-1584784 Msa0229750:intron
AAGCAAGAACGTCCTCCTAG+TGG 0.646163 2_2:-1589054 Msa0229750:five_prime_UTR
TTGCATTGTCGAAAAGAACA+CGG 0.647652 2_2:+1587661 None:intergenic
ACAAATGGCTACTATGTACA+CGG 0.650955 2_2:-1583197 Msa0229750:CDS
GAAAACGGCTTCATGGCTAA+GGG 0.653245 2_2:-1587422 Msa0229750:CDS
ACCCTCCAAGAGGACCCACT+AGG 0.662964 2_2:+1589039 None:intergenic
GGAGTTTGTGAAGCAAGTTG+AGG 0.666870 2_2:-1583469 Msa0229750:CDS
AAGGTAGAAACATACCAGGA+GGG 0.668694 2_2:+1589002 None:intergenic
GCAGTAATAATGGCTTTGCA+TGG 0.669620 2_2:-1588176 Msa0229750:CDS
AATGACAGACACCCTCCAAG+AGG 0.672584 2_2:+1589029 None:intergenic
AAGGTTGATGGAAACCGGAA+TGG 0.675520 2_2:+1584645 None:intergenic
AGAAAACTTAAAGCTGATCG+CGG 0.679693 2_2:-1586538 Msa0229750:CDS
GACACGTAAAGAAAGAACAA+AGG 0.679744 2_2:+1587683 None:intergenic
TAAGGCAACGACAGCCCACA+GGG 0.682134 2_2:-1583724 Msa0229750:CDS
GGTCCAACTAGAGATTGGAT+CGG 0.683709 2_2:-1586486 Msa0229750:CDS
ACAGCTGACAGATCCCCGGT+GGG 0.686035 2_2:+1584970 None:intergenic
CATCGTGCAATTCTGCACAA+TGG 0.686650 2_2:-1587046 Msa0229750:CDS
AAGGAAAGCCATAACTACTG+TGG 0.689938 2_2:+1582660 None:intergenic
AAAGCCTCTTGCTTTCTGTG+GGG 0.714944 2_2:+1587156 None:intergenic
TGGAGCCCTCCAACCCACCG+GGG 0.715980 2_2:-1584983 Msa0229750:CDS
GCAAAATGGGCATATCCGGG+TGG 0.723451 2_2:-1587642 Msa0229750:CDS
TTGGACAGTTATCATCAACA+AGG 0.723832 2_2:-1587363 Msa0229750:CDS
TTATGTTTCGAAAATCACGA+CGG 0.732189 2_2:+1586209 None:intergenic
AGTTCATCCACAAATTCACG+GGG 0.744511 2_2:+1587328 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCATCAAATTATTAAAA+GGG + chr2_2:1582893-1582912 None:intergenic 10.0%
!! AATTTCATCAAATTATTAAA+AGG + chr2_2:1582894-1582913 None:intergenic 10.0%
!!! TTTCTTTTAATAAATCAATT+AGG - chr2_2:1584262-1584281 Msa0229750:intron 10.0%
!! AAATTGATTATATAAATGAA+GGG - chr2_2:1585527-1585546 Msa0229750:CDS 10.0%
!! AAACAATACAAATATTTAAA+AGG + chr2_2:1585636-1585655 None:intergenic 10.0%
!!! AATATTTTTCATATACAATA+AGG + chr2_2:1588896-1588915 None:intergenic 10.0%
!!! GTTTTATTTTTAATGTGTTA+CGG + chr2_2:1582634-1582653 None:intergenic 15.0%
!!! TTATTGATTTTGTTAATGTT+TGG + chr2_2:1582656-1582675 None:intergenic 15.0%
!! TTTCATCAAATTATTAAAAG+GGG + chr2_2:1582892-1582911 None:intergenic 15.0%
!! GAAAATCAATCAATATAATT+TGG + chr2_2:1583256-1583275 None:intergenic 15.0%
!! ATAAGAGAAATAAATTGTAA+AGG + chr2_2:1583540-1583559 None:intergenic 15.0%
!!! TGTTCATATTGATTTTTTAT+AGG - chr2_2:1583560-1583579 Msa0229750:intron 15.0%
!! TTATTGTAACAATATAGAAT+CGG - chr2_2:1583626-1583645 Msa0229750:intron 15.0%
!! TTTATTTAGTGTATTAAACT+TGG - chr2_2:1584533-1584552 Msa0229750:intron 15.0%
!! TCTTTAAACAATTCATTAAT+GGG + chr2_2:1584667-1584686 None:intergenic 15.0%
!! CATTTATATAATCAATTTCT+TGG + chr2_2:1585525-1585544 None:intergenic 15.0%
!! GAAATTGATTATATAAATGA+AGG - chr2_2:1585526-1585545 Msa0229750:CDS 15.0%
!!! CTTTAATTTTAAAGAAAACA+AGG + chr2_2:1585883-1585902 None:intergenic 15.0%
!! CTTTATTAGAATAGATAATT+AGG + chr2_2:1586609-1586628 None:intergenic 15.0%
!! CTAATTATCTATTCTAATAA+AGG - chr2_2:1586607-1586626 Msa0229750:intron 15.0%
!! AAATTTATAAGATAGAGATA+TGG + chr2_2:1586893-1586912 None:intergenic 15.0%
!!! AATTTCATAATTTGATTTTC+AGG - chr2_2:1586908-1586927 Msa0229750:intron 15.0%
!!! ACTTGAATATTTAATTCTTT+TGG - chr2_2:1587016-1587035 Msa0229750:CDS 15.0%
!!! TTATTATTGATGGAATTTTT+TGG - chr2_2:1587078-1587097 Msa0229750:CDS 15.0%
!! AAGAAACAAATAAGAAAATA+GGG + chr2_2:1587404-1587423 None:intergenic 15.0%
!! AAAGAAACAAATAAGAAAAT+AGG + chr2_2:1587405-1587424 None:intergenic 15.0%
!!! TTCAACTTATTTTTTCTTAT+TGG - chr2_2:1588500-1588519 Msa0229750:intron 15.0%
!! TGAACATGATAAAAAATATT+TGG + chr2_2:1588720-1588739 None:intergenic 15.0%
!! AACGTATTAACATATTCAAA+TGG + chr2_2:1583210-1583229 None:intergenic 20.0%
!!! TGAATATGTTAATACGTTTT+TGG - chr2_2:1583212-1583231 Msa0229750:CDS 20.0%
!!! ATTTTACAAGATATAACAAC+CGG + chr2_2:1583392-1583411 None:intergenic 20.0%
!! ATAAATTGTCAAAGAATGAA+AGG - chr2_2:1583703-1583722 Msa0229750:CDS 20.0%
!! CTCTTTAAACAATTCATTAA+TGG + chr2_2:1584668-1584687 None:intergenic 20.0%
!!! ATATATGATTAATTTTGCTG+AGG + chr2_2:1584933-1584952 None:intergenic 20.0%
!!! ACAACTAAGTTTTATATACA+TGG - chr2_2:1585066-1585085 Msa0229750:intron 20.0%
!! TAGAGATTGGAAATTTATAA+AGG + chr2_2:1585732-1585751 None:intergenic 20.0%
!! TATGCGGTTAATATTAAAAT+TGG + chr2_2:1585758-1585777 None:intergenic 20.0%
!!! TTATTTGATTTTTTTTTCCC+CGG - chr2_2:1585972-1585991 Msa0229750:CDS 20.0%
!! AGGTATTAAAATAAATCAAG+TGG - chr2_2:1585999-1586018 Msa0229750:intron 20.0%
!! TCAATTATTTATTACGACTT+TGG - chr2_2:1586265-1586284 Msa0229750:CDS 20.0%
!! AAAGTTTAAGTAAATGTGAA+AGG + chr2_2:1586732-1586751 None:intergenic 20.0%
!!! AGTTTTAATCTTTTACAAGA+TGG - chr2_2:1586842-1586861 Msa0229750:intron 20.0%
!!! TATGGCAATTTTATTATTGA+TGG - chr2_2:1587068-1587087 Msa0229750:CDS 20.0%
!! AGAAACAAATAAGAAAATAG+GGG + chr2_2:1587403-1587422 None:intergenic 20.0%
!!! TCATGATATCTTCATATTTT+AGG - chr2_2:1587598-1587617 Msa0229750:intron 20.0%
!! TGAGAAAAAACTATTAAAGT+AGG - chr2_2:1587631-1587650 Msa0229750:CDS 20.0%
!!! GTGAAGCATTATTTTAATTA+TGG - chr2_2:1588191-1588210 Msa0229750:exon 20.0%
!!! AGAAAAAATAAGTTGAAGAA+TGG + chr2_2:1588497-1588516 None:intergenic 20.0%
!!! TTTTGTTCATACTATTCTTA+CGG - chr2_2:1588798-1588817 Msa0229750:intron 20.0%
!! TTTCATATACAATAAGGAAT+TGG + chr2_2:1588890-1588909 None:intergenic 20.0%
! TTGTGAATGACTTAAATTCA+AGG - chr2_2:1582985-1583004 Msa0229750:intron 25.0%
! TGAACTCTATCTTAGATAAT+TGG + chr2_2:1583046-1583065 None:intergenic 25.0%
!!! ACCTTTTTAAGAGTAAGATA+TGG - chr2_2:1583165-1583184 Msa0229750:CDS 25.0%
! GGTTGTTATATCTTGTAAAA+TGG - chr2_2:1583391-1583410 Msa0229750:intron 25.0%
!!! TTATTACCTAATTTTGATGG+CGG + chr2_2:1583798-1583817 None:intergenic 25.0%
!! CCATTATTACCTAATTTTGA+TGG + chr2_2:1583801-1583820 None:intergenic 25.0%
! CCATCAAAATTAGGTAATAA+TGG - chr2_2:1583798-1583817 Msa0229750:intron 25.0%
! TAAATCAATTAGGTTTCTGT+TGG - chr2_2:1584272-1584291 Msa0229750:intron 25.0%
! TGTCCAAGTTTAATAAAAGT+TGG + chr2_2:1584400-1584419 None:intergenic 25.0%
! TTTAGTGTATTAAACTTGGT+TGG - chr2_2:1584537-1584556 Msa0229750:intron 25.0%
! TGTTTAAAGAGTTTGAAGAT+CGG - chr2_2:1584677-1584696 Msa0229750:intron 25.0%
! AAGTAGTTATCAAAGTTCAA+AGG - chr2_2:1584758-1584777 Msa0229750:intron 25.0%
! TTGTCTAATATTACGAAACT+TGG - chr2_2:1584965-1584984 Msa0229750:intron 25.0%
! TACTATGATATCATCCAAAA+AGG - chr2_2:1585151-1585170 Msa0229750:intron 25.0%
! ACTATGATATCATCCAAAAA+GGG - chr2_2:1585152-1585171 Msa0229750:intron 25.0%
! TCAAACTTTAACATGTAATG+AGG + chr2_2:1585379-1585398 None:intergenic 25.0%
!! GTGCAAAGTATTAAAAATGA+TGG + chr2_2:1585448-1585467 None:intergenic 25.0%
!! TGATTTTCGAAACATAAAGT+GGG - chr2_2:1585573-1585592 Msa0229750:CDS 25.0%
! TATATGAGACATGATTATGA+AGG + chr2_2:1585688-1585707 None:intergenic 25.0%
! CATAATCATGTCTCATATAT+TGG - chr2_2:1585689-1585708 Msa0229750:intron 25.0%
! TTAAAATTGGAGTTAGAGAT+TGG + chr2_2:1585745-1585764 None:intergenic 25.0%
! CTTCAAGGAAATAAAGTTAT+TGG + chr2_2:1585906-1585925 None:intergenic 25.0%
!!! TATTTGATTTTTTTTTCCCC+GGG - chr2_2:1585973-1585992 Msa0229750:CDS 25.0%
!!! TTTATTTTAATACCTGTTCC+CGG + chr2_2:1585994-1586013 None:intergenic 25.0%
! TATTAGATACACTTTCAGAT+AGG + chr2_2:1586110-1586129 None:intergenic 25.0%
! GTTGAATATATTCATCTGAT+CGG - chr2_2:1586136-1586155 Msa0229750:intron 25.0%
!! TTGATTGTTGATAAGCTATT+AGG - chr2_2:1586454-1586473 Msa0229750:intron 25.0%
! TTCCGAATTATCTGAATTTA+TGG - chr2_2:1587050-1587069 Msa0229750:CDS 25.0%
! TGCCATAAATTCAGATAATT+CGG + chr2_2:1587055-1587074 None:intergenic 25.0%
! AGAAAATGCTCTAATAACAA+AGG + chr2_2:1587159-1587178 None:intergenic 25.0%
! TTACTTTAAATGAGGTACAA+AGG + chr2_2:1587233-1587252 None:intergenic 25.0%
!! CATATACGATATACCAATTT+TGG + chr2_2:1587286-1587305 None:intergenic 25.0%
!! AGAACTTTTCAATTTCCTTT+TGG + chr2_2:1587369-1587388 None:intergenic 25.0%
!!! AATAAGAAAATAGGGGTATT+GGG + chr2_2:1587396-1587415 None:intergenic 25.0%
!! AAATAAGAAAATAGGGGTAT+TGG + chr2_2:1587397-1587416 None:intergenic 25.0%
! CCATTAAACCTATATTTCAT+GGG + chr2_2:1587538-1587557 None:intergenic 25.0%
! TCCATTAAACCTATATTTCA+TGG + chr2_2:1587539-1587558 None:intergenic 25.0%
! ATATCCCAAATTATTTACCT+TGG - chr2_2:1587667-1587686 Msa0229750:CDS 25.0%
! TGAGTTAAAGTGTATCTAAA+TGG + chr2_2:1587788-1587807 None:intergenic 25.0%
! AACTCATTTACACAATAACA+CGG - chr2_2:1587802-1587821 Msa0229750:CDS 25.0%
! ATTACAAAACAAACATCATC+TGG + chr2_2:1588158-1588177 None:intergenic 25.0%
!! ACATTAAATTACGTCTTGTT+TGG - chr2_2:1588430-1588449 Msa0229750:intron 25.0%
! ATTGACACCAATATTTAGAA+AGG + chr2_2:1588617-1588636 None:intergenic 25.0%
! TAAGGAATTGGATATTTGTT+GGG + chr2_2:1588878-1588897 None:intergenic 25.0%
! ATAAGGAATTGGATATTTGT+TGG + chr2_2:1588879-1588898 None:intergenic 25.0%
!! AAGTTTTACAAAAAAGTTGC+AGG - chr2_2:1588965-1588984 Msa0229750:intron 25.0%
!! AGTTTTACAAAAAAGTTGCA+GGG - chr2_2:1588966-1588985 Msa0229750:intron 25.0%
!! TGACATTTTCTTTATCATCA+AGG + chr2_2:1589018-1589037 None:intergenic 25.0%
! AAGAAAATGTCATTGTTTAG+AGG - chr2_2:1589026-1589045 Msa0229750:five_prime_UTR 25.0%
! AGAAAATGTCATTGTTTAGA+GGG - chr2_2:1589027-1589046 Msa0229750:five_prime_UTR 25.0%
!! TTTTCTAACTATAGTGTACA+TGG + chr2_2:1589075-1589094 None:intergenic 25.0%
!! TTAAATTATGCAAGAGTACA+AGG + chr2_2:1589138-1589157 None:intergenic 25.0%
AAGAAGAAGAAGAAGAAGAA+AGG + chr2_2:1582796-1582815 None:intergenic 30.0%
!! TGATCATTGAGTTGAAAGAA+AGG + chr2_2:1583085-1583104 None:intergenic 30.0%
CTTAGTTCAATTAGACAACA+TGG - chr2_2:1583113-1583132 Msa0229750:CDS 30.0%
!! TGGTTAGTTTACTATTGTAC+TGG - chr2_2:1583133-1583152 Msa0229750:CDS 30.0%
GCCATATCTTACTCTTAAAA+AGG + chr2_2:1583169-1583188 None:intergenic 30.0%
! TAGCTAGAGTTTAGAATCAT+TGG - chr2_2:1583276-1583295 Msa0229750:intron 30.0%
! AGCTAGAGTTTAGAATCATT+GGG - chr2_2:1583277-1583296 Msa0229750:intron 30.0%
TTAGGGGTAATCTTGTAAAT+TGG - chr2_2:1583349-1583368 Msa0229750:intron 30.0%
TCTTGTTAGAATTAGAACAC+TGG + chr2_2:1583507-1583526 None:intergenic 30.0%
ATAGGTATCATTACCCTAAA+TGG - chr2_2:1583578-1583597 Msa0229750:intron 30.0%
ACATCTGATAAGTTAAAGAG+TGG - chr2_2:1583729-1583748 Msa0229750:CDS 30.0%
TGGTAAATTTCGTAGATTTG+TGG - chr2_2:1583749-1583768 Msa0229750:intron 30.0%
TAAATTTCGTAGATTTGTGG+TGG - chr2_2:1583752-1583771 Msa0229750:intron 30.0%
TAATGGTAGAGCTGTTAAAA+TGG - chr2_2:1583815-1583834 Msa0229750:intron 30.0%
!!! AAAACTTTTAGCTCTTCAAG+TGG + chr2_2:1584002-1584021 None:intergenic 30.0%
! TTCTTTTCGACAATGCAAAA+TGG - chr2_2:1584120-1584139 Msa0229750:intron 30.0%
! TCTTTTCGACAATGCAAAAT+GGG - chr2_2:1584121-1584140 Msa0229750:intron 30.0%
! TTGCATTTTAGATAAGCAGA+AGG - chr2_2:1584329-1584348 Msa0229750:intron 30.0%
! GGTCCAACTTTTATTAAACT+TGG - chr2_2:1584394-1584413 Msa0229750:intron 30.0%
!! GTCAATATTTTCAAGCTCAT+TGG - chr2_2:1584503-1584522 Msa0229750:intron 30.0%
TTCTCGATATAACATTCTTC+AGG - chr2_2:1584579-1584598 Msa0229750:intron 30.0%
ATATAACATTCTTCAGGACA+AGG - chr2_2:1584585-1584604 Msa0229750:intron 30.0%
CGTTAGTATCATGTTTAAGA+TGG - chr2_2:1584876-1584895 Msa0229750:intron 30.0%
! TCATGTTTAAGATGGATCTA+AGG - chr2_2:1584884-1584903 Msa0229750:intron 30.0%
TATCTGGTCTAGTTATTGTA+AGG - chr2_2:1585128-1585147 Msa0229750:intron 30.0%
! TTTCAGAGAAGTGAAACTTT+TGG - chr2_2:1585266-1585285 Msa0229750:intron 30.0%
CTTTAACATGTAATGAGGTA+AGG + chr2_2:1585374-1585393 None:intergenic 30.0%
! AAAGTTTGAGCAACTCTTTT+TGG - chr2_2:1585390-1585409 Msa0229750:intron 30.0%
! AAGTTTGAGCAACTCTTTTT+GGG - chr2_2:1585391-1585410 Msa0229750:intron 30.0%
TTATGTTTCGAAAATCACGA+CGG + chr2_2:1585570-1585589 None:intergenic 30.0%
! GTGATTTTCGAAACATAAAG+TGG - chr2_2:1585572-1585591 Msa0229750:CDS 30.0%
TATTGCAGAAAGAAACATAC+AGG + chr2_2:1585607-1585626 None:intergenic 30.0%
TCAGAGTAAATCAAGTTTCA+AGG + chr2_2:1585665-1585684 None:intergenic 30.0%
TTGATAGAAACAACACTTCA+AGG + chr2_2:1585921-1585940 None:intergenic 30.0%
ATAAGAGCAATTATGAATCC+AGG + chr2_2:1585956-1585975 None:intergenic 30.0%
!!! TTATTTTAATACCTGTTCCC+GGG + chr2_2:1585993-1586012 None:intergenic 30.0%
GTGTTACAGATATTGAAAAC+AGG - chr2_2:1586190-1586209 Msa0229750:intron 30.0%
!! GTTTTATTCCGTTTATGAGA+AGG - chr2_2:1586336-1586355 Msa0229750:intron 30.0%
! TGAAAGAAACTAGACCTTTT+TGG + chr2_2:1586365-1586384 None:intergenic 30.0%
! ATTCAATGCCTTATTGATCT+TGG - chr2_2:1586773-1586792 Msa0229750:intron 30.0%
!!! CATAATTTGATTTTCAGGTG+AGG - chr2_2:1586913-1586932 Msa0229750:intron 30.0%
! GAGATCTGTACAATTTTTCT+TGG - chr2_2:1586935-1586954 Msa0229750:intron 30.0%
!!! TATTGATGGAATTTTTTGGC+AGG - chr2_2:1587082-1587101 Msa0229750:CDS 30.0%
! ACCTCATTTAAAGTAAGCTA+AGG - chr2_2:1587237-1587256 Msa0229750:intron 30.0%
ACCTTAGCTTACTTTAAATG+AGG + chr2_2:1587241-1587260 None:intergenic 30.0%
!! ATATACCAATTTTGGTATGC+CGG + chr2_2:1587278-1587297 None:intergenic 30.0%
TATTGGCAATGAAACATGAT+TGG - chr2_2:1587462-1587481 Msa0229750:intron 30.0%
! CCTATTGTTCTTTTCTTTCT+CGG + chr2_2:1587499-1587518 None:intergenic 30.0%
AGAAAAGAACAATAGGATGT+AGG - chr2_2:1587503-1587522 Msa0229750:intron 30.0%
TAAACCTATATTTCATGGGA+TGG + chr2_2:1587534-1587553 None:intergenic 30.0%
CCCATGAAATATAGGTTTAA+TGG - chr2_2:1587535-1587554 Msa0229750:intron 30.0%
! AATCATGCCTTATACTGATT+TGG + chr2_2:1587565-1587584 None:intergenic 30.0%
AAATCAGTATAAGGCATGAT+TGG - chr2_2:1587564-1587583 Msa0229750:intron 30.0%
GACACCAAGGTAAATAATTT+GGG + chr2_2:1587674-1587693 None:intergenic 30.0%
TGACACCAAGGTAAATAATT+TGG + chr2_2:1587675-1587694 None:intergenic 30.0%
ACTCATTTACACAATAACAC+GGG - chr2_2:1587803-1587822 Msa0229750:CDS 30.0%
! TGACTTTTTATTCTTCTGAC+AGG - chr2_2:1587871-1587890 Msa0229750:CDS 30.0%
ATCTTCACAAATGAGAAATC+TGG + chr2_2:1587916-1587935 None:intergenic 30.0%
!! ATAGCATTTTAACCGAGAAT+GGG + chr2_2:1587987-1588006 None:intergenic 30.0%
! TATATCATGCATGCTTTTAC+AGG - chr2_2:1588017-1588036 Msa0229750:CDS 30.0%
TACAGGAACTTCTAGATATA+AGG - chr2_2:1588034-1588053 Msa0229750:CDS 30.0%
AAAGCTTAAATGAAAGTTCC+AGG + chr2_2:1588130-1588149 None:intergenic 30.0%
ACTAGAATTAACAAGTCTCA+CGG - chr2_2:1588226-1588245 Msa0229750:intron 30.0%
TCTATTCTTTGAACTCTCAA+TGG + chr2_2:1588287-1588306 None:intergenic 30.0%
ATTGAGAGTTCAAAGAATAG+AGG - chr2_2:1588286-1588305 Msa0229750:intron 30.0%
GTATAGCTTATATGTGTAAG+CGG + chr2_2:1588939-1588958 None:intergenic 30.0%
ACGGTATAAACACGACAAAA+GGG + chr2_2:1582615-1582634 None:intergenic 35.0%
TACGGTATAAACACGACAAA+AGG + chr2_2:1582616-1582635 None:intergenic 35.0%
! ACAAAAGGTGTAAGAACAAG+TGG + chr2_2:1582695-1582714 None:intergenic 35.0%
! TTCTTACACCTTTTGTAACG+TGG - chr2_2:1582699-1582718 Msa0229750:three_prime_UTR 35.0%
AAGAAAGGTAGAAACATACC+AGG + chr2_2:1582781-1582800 None:intergenic 35.0%
TTCCATAAGTTATCTCGACT+GGG - chr2_2:1582851-1582870 Msa0229750:three_prime_UTR 35.0%
TTAAGAGTAAGATATGGCAG+TGG - chr2_2:1583171-1583190 Msa0229750:CDS 35.0%
GAGTATGACTCATAGTAGTT+AGG - chr2_2:1583303-1583322 Msa0229750:intron 35.0%
GAACTGTCATGTACAGTTTA+GGG - chr2_2:1583332-1583351 Msa0229750:intron 35.0%
AACTGTCATGTACAGTTTAG+GGG - chr2_2:1583333-1583352 Msa0229750:intron 35.0%
CAACCGGTGTTTAAATACTA+CGG + chr2_2:1583376-1583395 None:intergenic 35.0%
CGAAATTTGATCATGGAACT+CGG + chr2_2:1583442-1583461 None:intergenic 35.0%
GAACACACGAAATTTGATCA+TGG + chr2_2:1583449-1583468 None:intergenic 35.0%
ACCCTAAATGGCAGTAATAA+TGG - chr2_2:1583590-1583609 Msa0229750:intron 35.0%
! GCCATTATTACTGCCATTTA+GGG + chr2_2:1583594-1583613 None:intergenic 35.0%
! AGCCATTATTACTGCCATTT+AGG + chr2_2:1583595-1583614 None:intergenic 35.0%
TAGAGCTGTTAAAATGGTAC+CGG - chr2_2:1583821-1583840 Msa0229750:intron 35.0%
AATAAAGTGGAGACAGTCAA+TGG - chr2_2:1583879-1583898 Msa0229750:CDS 35.0%
! CCAGGAACTGTAATTTTCAT+TGG + chr2_2:1584051-1584070 None:intergenic 35.0%
CCAATGAAAATTACAGTTCC+TGG - chr2_2:1584048-1584067 Msa0229750:intron 35.0%
GACACGTAAAGAAAGAACAA+AGG + chr2_2:1584096-1584115 None:intergenic 35.0%
TTGCATTGTCGAAAAGAACA+CGG + chr2_2:1584118-1584137 None:intergenic 35.0%
! TTTTCTGAACTCTAACTAGC+TGG - chr2_2:1584193-1584212 Msa0229750:intron 35.0%
! CATTTTAGATAAGCAGAAGG+AGG - chr2_2:1584332-1584351 Msa0229750:intron 35.0%
TTGGACAGTTATCATCAACA+AGG - chr2_2:1584413-1584432 Msa0229750:intron 35.0%
!! GGCTTTATTGAGAGTGAATT+AGG - chr2_2:1584637-1584656 Msa0229750:CDS 35.0%
TCAAAAAGCTTCTTCAAACC+AGG + chr2_2:1584784-1584803 None:intergenic 35.0%
AACATCACAAGATGTGCAAA+TGG + chr2_2:1584843-1584862 None:intergenic 35.0%
AAGGATTTCTGAATTGCTAG+AGG - chr2_2:1584903-1584922 Msa0229750:intron 35.0%
TATGTCTTTCACAATCAGTG+TGG + chr2_2:1585110-1585129 None:intergenic 35.0%
CTGATTGTGAAAGACATATC+TGG - chr2_2:1585112-1585131 Msa0229750:intron 35.0%
AGAAAACTTAAAGCTGATCG+CGG - chr2_2:1585238-1585257 Msa0229750:intron 35.0%
GAAAGAAACATACAGGTACT+CGG + chr2_2:1585600-1585619 None:intergenic 35.0%
TTGGGATTATACAGCAATGA+AGG - chr2_2:1585808-1585827 Msa0229750:intron 35.0%
CACTATTCAAGATGATAACC+TGG + chr2_2:1585854-1585873 None:intergenic 35.0%
AATTATGAATCCAGGTTCAG+TGG + chr2_2:1585948-1585967 None:intergenic 35.0%
!!! TATTTTAATACCTGTTCCCG+GGG + chr2_2:1585992-1586011 None:intergenic 35.0%
TACACTTTCAGATAGGAACA+AGG + chr2_2:1586103-1586122 None:intergenic 35.0%
ACATCAATAGCAAGATTTCC+AGG + chr2_2:1586238-1586257 None:intergenic 35.0%
TTATTACGACTTTGGCATGA+TGG - chr2_2:1586273-1586292 Msa0229750:intron 35.0%
TATTACGACTTTGGCATGAT+GGG - chr2_2:1586274-1586293 Msa0229750:intron 35.0%
TTTGGCATCCTTCTCATAAA+CGG + chr2_2:1586347-1586366 None:intergenic 35.0%
TTATGAGAAGGATGCCAAAA+AGG - chr2_2:1586348-1586367 Msa0229750:intron 35.0%
CATTACAAGAAGACACAAAC+AGG + chr2_2:1586499-1586518 None:intergenic 35.0%
TTCACATTCACACACACATT+AGG - chr2_2:1586536-1586555 Msa0229750:CDS 35.0%
ATAACAAAGGTGAAGGTTGA+TGG + chr2_2:1587146-1587165 None:intergenic 35.0%
TGCTCTAATAACAAAGGTGA+AGG + chr2_2:1587153-1587172 None:intergenic 35.0%
!! AGAGCATTTTCTACACTTGA+AGG - chr2_2:1587167-1587186 Msa0229750:CDS 35.0%
TTCATGCACATTAGAAGAGA+AGG + chr2_2:1587199-1587218 None:intergenic 35.0%
GGTATATCGTATATGTGAAG+AGG - chr2_2:1587291-1587310 Msa0229750:intron 35.0%
TCTTTGTAAACCTTTCTGCA+CGG - chr2_2:1587420-1587439 Msa0229750:CDS 35.0%
TCATGAGGAAAGTAGTGTAT+TGG - chr2_2:1587445-1587464 Msa0229750:intron 35.0%
CCGAGAAAGAAAAGAACAAT+AGG - chr2_2:1587496-1587515 Msa0229750:intron 35.0%
AAAGAACAATAGGATGTAGG+TGG - chr2_2:1587506-1587525 Msa0229750:intron 35.0%
TGGAACACCAAATCAGTATA+AGG - chr2_2:1587555-1587574 Msa0229750:intron 35.0%
ATAACTACATGTCTAGCGTA+GGG + chr2_2:1587698-1587717 None:intergenic 35.0%
AATAACTACATGTCTAGCGT+AGG + chr2_2:1587699-1587718 None:intergenic 35.0%
TTTATTCTTCTGACAGGCAT+AGG - chr2_2:1587877-1587896 Msa0229750:CDS 35.0%
TCAGTTATTGTTCCCATTCT+CGG - chr2_2:1587972-1587991 Msa0229750:CDS 35.0%
!! CATAGCATTTTAACCGAGAA+TGG + chr2_2:1587988-1588007 None:intergenic 35.0%
GCATGTGAAGATGAAAGAAT+TGG + chr2_2:1588373-1588392 None:intergenic 35.0%
TCTTTCATCTTCACATGCTA+TGG - chr2_2:1588375-1588394 Msa0229750:intron 35.0%
ACAAATGGCTACTATGTACA+CGG - chr2_2:1588579-1588598 Msa0229750:intron 35.0%
GGAGGAACCTTTCTAAATAT+TGG - chr2_2:1588607-1588626 Msa0229750:intron 35.0%
TTGCAAAAGTTTGATTGCCT+TGG + chr2_2:1588648-1588667 None:intergenic 35.0%
! GGCAATCAAACTTTTGCAAA+TGG - chr2_2:1588649-1588668 Msa0229750:intron 35.0%
TTTGCAAATGGATCGTTTGT+TGG - chr2_2:1588661-1588680 Msa0229750:intron 35.0%
GTATCAGCTTATTCATATGC+AGG - chr2_2:1588773-1588792 Msa0229750:intron 35.0%
TATTCTTACGGTCTATGCAA+AGG - chr2_2:1588810-1588829 Msa0229750:intron 35.0%
ATTCTTACGGTCTATGCAAA+GGG - chr2_2:1588811-1588830 Msa0229750:intron 35.0%
CAAGTGGTTGAACTTGAACA+TGG + chr2_2:1582679-1582698 None:intergenic 40.0%
TCTTGCTTCCACGTTACAAA+AGG + chr2_2:1582710-1582729 None:intergenic 40.0%
AAGGTAGAAACATACCAGGA+GGG + chr2_2:1582777-1582796 None:intergenic 40.0%
AAAGGTAGAAACATACCAGG+AGG + chr2_2:1582778-1582797 None:intergenic 40.0%
CTTCCATAAGTTATCTCGAC+TGG - chr2_2:1582850-1582869 Msa0229750:three_prime_UTR 40.0%
TACCCAGTCGAGATAACTTA+TGG + chr2_2:1582856-1582875 None:intergenic 40.0%
CGAACTGTCATGTACAGTTT+AGG - chr2_2:1583331-1583350 Msa0229750:intron 40.0%
GGACCGTAGTATTTAAACAC+CGG - chr2_2:1583370-1583389 Msa0229750:intron 40.0%
! GCAGTAATAATGGCTTTGCA+TGG - chr2_2:1583600-1583619 Msa0229750:intron 40.0%
CGAAGATCACTAGACAATCT+TGG - chr2_2:1583657-1583676 Msa0229750:intron 40.0%
GAAATGCCGCCATCAAAATT+AGG - chr2_2:1583789-1583808 Msa0229750:intron 40.0%
!! CTTTTTGCTATCTCAGTTGC+CGG + chr2_2:1583843-1583862 None:intergenic 40.0%
AGCAAAAAGAAAGACACCGT+CGG - chr2_2:1583854-1583873 Msa0229750:CDS 40.0%
AGCTGTTAATGGAGCAAGTT+TGG - chr2_2:1583911-1583930 Msa0229750:intron 40.0%
TTCGTTGTCTTTGTCAATGC+TGG + chr2_2:1583954-1583973 None:intergenic 40.0%
GGAAGTTCATTGGAGATTGT+AGG + chr2_2:1583978-1583997 None:intergenic 40.0%
! TTCAAGTGGTGGAAGTTCAT+TGG + chr2_2:1583988-1584007 None:intergenic 40.0%
!!! ACTTTTAGCTCTTCAAGTGG+TGG + chr2_2:1583999-1584018 None:intergenic 40.0%
! AAAGTTTTGCCCTCAGATGA+AGG - chr2_2:1584014-1584033 Msa0229750:intron 40.0%
TACATCAATTGATCTCTGCC+AGG + chr2_2:1584069-1584088 None:intergenic 40.0%
GGCAGAGATCAATTGATGTA+TGG - chr2_2:1584069-1584088 Msa0229750:intron 40.0%
CAATGCAAAATGGGCATATC+CGG - chr2_2:1584130-1584149 Msa0229750:intron 40.0%
AATGCAAAATGGGCATATCC+GGG - chr2_2:1584131-1584150 Msa0229750:intron 40.0%
TTCACAGAAGAAAAGCAGGT+AGG - chr2_2:1584158-1584177 Msa0229750:intron 40.0%
! GAAGAAAAGCAGGTAGGTTT+TGG - chr2_2:1584164-1584183 Msa0229750:intron 40.0%
CTAGCTGGTAGAAAGTTTCT+CGG - chr2_2:1584208-1584227 Msa0229750:intron 40.0%
GATAAGCAGAAGGAGGAAAA+CGG - chr2_2:1584339-1584358 Msa0229750:intron 40.0%
AGGGAATCTGTATTACAGCT+CGG - chr2_2:1584373-1584392 Msa0229750:intron 40.0%
TCTATTTCCCCGTGAATTTG+TGG - chr2_2:1584441-1584460 Msa0229750:intron 40.0%
AGTTCATCCACAAATTCACG+GGG + chr2_2:1584451-1584470 None:intergenic 40.0%
GAGTTCATCCACAAATTCAC+GGG + chr2_2:1584452-1584471 None:intergenic 40.0%
CGAGTTCATCCACAAATTCA+CGG + chr2_2:1584453-1584472 None:intergenic 40.0%
TAAAGCCTCTTGCTTTCTGT+GGG + chr2_2:1584624-1584643 None:intergenic 40.0%
ATAAAGCCTCTTGCTTTCTG+TGG + chr2_2:1584625-1584644 None:intergenic 40.0%
GTTATCAAAGTTCAAAGGCC+TGG - chr2_2:1584763-1584782 Msa0229750:intron 40.0%
!! CAAGCTTTAACGTCCCTTTT+TGG + chr2_2:1585168-1585187 None:intergenic 40.0%
CAAAAAGGGACGTTAAAGCT+TGG - chr2_2:1585166-1585185 Msa0229750:intron 40.0%
!!! CAGCTTTAAGTTTTCTGGAC+AGG + chr2_2:1585234-1585253 None:intergenic 40.0%
!!! GCGATCAGCTTTAAGTTTTC+TGG + chr2_2:1585239-1585258 None:intergenic 40.0%
! CAGAGAAGTGAAACTTTTGG+TGG - chr2_2:1585269-1585288 Msa0229750:intron 40.0%
ATACCGATCCAATCTCTAGT+TGG + chr2_2:1585296-1585315 None:intergenic 40.0%
ATGAAGGGAAGAATGCTGAT+AGG - chr2_2:1585542-1585561 Msa0229750:CDS 40.0%
! ACCCTTGTAGCTGGTTTATT+GGG - chr2_2:1585790-1585809 Msa0229750:intron 40.0%
TCCCAATAAACCAGCTACAA+GGG + chr2_2:1585794-1585813 None:intergenic 40.0%
ATCCCAATAAACCAGCTACA+AGG + chr2_2:1585795-1585814 None:intergenic 40.0%
ATAACCTGGTACATACTCCA+AGG + chr2_2:1585840-1585859 None:intergenic 40.0%
TATCAATATGCCACTGAACC+TGG - chr2_2:1585935-1585954 Msa0229750:intron 40.0%
!!! ATTTTTTTTTCCCCGGGAAC+AGG - chr2_2:1585979-1585998 Msa0229750:CDS 40.0%
! AATCTCATCACGTGCTATTG+AGG - chr2_2:1586056-1586075 Msa0229750:intron 40.0%
TATTGAGGCGTACTTGATTC+AGG - chr2_2:1586071-1586090 Msa0229750:intron 40.0%
ATAGCAAGATTTCCAGGATG+TGG + chr2_2:1586232-1586251 None:intergenic 40.0%
ATTACGACTTTGGCATGATG+GGG - chr2_2:1586275-1586294 Msa0229750:intron 40.0%
CTTTCAATTGACAACGATGC+AGG - chr2_2:1586748-1586767 Msa0229750:intron 40.0%
AGCAGACATTGTCTGCAATT+GGG - chr2_2:1586988-1587007 Msa0229750:CDS 40.0%
!! AATTTTGGTATGCCGGACTT+CGG + chr2_2:1587271-1587290 None:intergenic 40.0%
GAATATGAACCTAAGCTCGA+AGG - chr2_2:1587330-1587349 Msa0229750:CDS 40.0%
!! GGCTTGTTGCTTTAACCAAA+AGG - chr2_2:1587351-1587370 Msa0229750:CDS 40.0%
GGATCCATCCCATGAAATAT+AGG - chr2_2:1587527-1587546 Msa0229750:intron 40.0%
! TTTGGGATATCTCTCACAAC+TGG + chr2_2:1587657-1587676 None:intergenic 40.0%
ATGATGTACCACACTTTACC+TGG - chr2_2:1588109-1588128 Msa0229750:CDS 40.0%
TGAAAGTTCCAGGTAAAGTG+TGG + chr2_2:1588120-1588139 None:intergenic 40.0%
AAGTCTCACGGAACATTTGT+AGG - chr2_2:1588238-1588257 Msa0229750:intron 40.0%
!! AACTCTCAATGGCATTGACA+TGG + chr2_2:1588276-1588295 None:intergenic 40.0%
GAAAGCGACAGTGTTACAAA+TGG - chr2_2:1588564-1588583 Msa0229750:intron 40.0%
GCTACTATGTACACGGTATT+AGG - chr2_2:1588586-1588605 Msa0229750:intron 40.0%
ACTATGTACACGGTATTAGG+AGG - chr2_2:1588589-1588608 Msa0229750:intron 40.0%
! GCTTTATTCTTGCGACTGAT+TGG - chr2_2:1588751-1588770 Msa0229750:intron 40.0%
! CCATAACTACTGTGGTAATG+TGG + chr2_2:1589111-1589130 None:intergenic 40.0%
CCACATTACCACAGTAGTTA+TGG - chr2_2:1589108-1589127 Msa0229750:five_prime_UTR 40.0%
AAGGAAAGCCATAACTACTG+TGG + chr2_2:1589119-1589138 None:intergenic 40.0%
!! TCCAAGTGCTGGTAATGTTT+GGG + chr2_2:1589162-1589181 None:intergenic 40.0%
!! ATCCAAGTGCTGGTAATGTT+TGG + chr2_2:1589163-1589182 None:intergenic 40.0%
!!! GTCTGTCATTTTTTCCCTCC+TGG - chr2_2:1582760-1582779 Msa0229750:three_prime_UTR 45.0%
CTCGGCTTACGAATGCATAA+TGG + chr2_2:1583424-1583443 None:intergenic 45.0%
GTCTCCACTTTATTCTCCGA+CGG + chr2_2:1583873-1583892 None:intergenic 45.0%
GGCTCAAAGCAAGCTGTTAA+TGG - chr2_2:1583900-1583919 Msa0229750:intron 45.0%
GTCTTTGTCAATGCTGGAGT+AGG + chr2_2:1583948-1583967 None:intergenic 45.0%
CAACTGAAGCCTTCATCTGA+GGG + chr2_2:1584026-1584045 None:intergenic 45.0%
CTCAGATGAAGGCTTCAGTT+GGG - chr2_2:1584025-1584044 Msa0229750:intron 45.0%
! TTTTCTTCTGTGAAGCCACC+CGG + chr2_2:1584152-1584171 None:intergenic 45.0%
TGGCTTCACAGAAGAAAAGC+AGG - chr2_2:1584154-1584173 Msa0229750:intron 45.0%
GAAAACGGCTTCATGGCTAA+GGG - chr2_2:1584354-1584373 Msa0229750:intron 45.0%
GGATGAACTCGCAAAATTGC+AGG - chr2_2:1584462-1584481 Msa0229750:intron 45.0%
AAAGCCTCTTGCTTTCTGTG+GGG + chr2_2:1584623-1584642 None:intergenic 45.0%
CATCGTGCAATTCTGCACAA+TGG - chr2_2:1584730-1584749 Msa0229750:intron 45.0%
GACAGGACAAGAAACTCGTT+AGG + chr2_2:1585217-1585236 None:intergenic 45.0%
! TTGGTGGTCCAACTAGAGAT+TGG - chr2_2:1585285-1585304 Msa0229750:intron 45.0%
GGTCCAACTAGAGATTGGAT+CGG - chr2_2:1585290-1585309 Msa0229750:intron 45.0%
!!! TCCTGCACATGCTACTTTTC+AGG - chr2_2:1585491-1585510 Msa0229750:CDS 45.0%
TCCTGAAAAGTAGCATGTGC+AGG + chr2_2:1585495-1585514 None:intergenic 45.0%
GGGTGCAAATGAAGGATATG+CGG + chr2_2:1585774-1585793 None:intergenic 45.0%
! AGCTACAAGGGTGCAAATGA+AGG + chr2_2:1585782-1585801 None:intergenic 45.0%
TTCATTTGCACCCTTGTAGC+TGG - chr2_2:1585781-1585800 Msa0229750:intron 45.0%
! CACCCTTGTAGCTGGTTTAT+TGG - chr2_2:1585789-1585808 Msa0229750:intron 45.0%
!! AGCAATGAAGGTGTTGACCT+TGG - chr2_2:1585820-1585839 Msa0229750:intron 45.0%
TTGACCTTGGAGTATGTACC+AGG - chr2_2:1585833-1585852 Msa0229750:intron 45.0%
!! GTGGATACATTGACTTCTCG+TGG - chr2_2:1586018-1586037 Msa0229750:intron 45.0%
TTACGACTTTGGCATGATGG+GGG - chr2_2:1586276-1586295 Msa0229750:intron 45.0%
ACAGTTCGAGCAATCTCTCA+CGG + chr2_2:1586318-1586337 None:intergenic 45.0%
CCTCTTAGCTACCAATTCCA+GGG - chr2_2:1586704-1586723 Msa0229750:intron 45.0%
CTCTTAGCTACCAATTCCAG+GGG - chr2_2:1586705-1586724 Msa0229750:intron 45.0%
AGTAAATGTGAAAGGACCCC+TGG + chr2_2:1586724-1586743 None:intergenic 45.0%
GACAATGTCTGCTCTTGATC+TGG + chr2_2:1586981-1587000 None:intergenic 45.0%
GAGCAGACATTGTCTGCAAT+TGG - chr2_2:1586987-1587006 Msa0229750:CDS 45.0%
GCAGACATTGTCTGCAATTG+GGG - chr2_2:1586989-1587008 Msa0229750:CDS 45.0%
!! AAGGTTGATGGAAACCGGAA+TGG + chr2_2:1587134-1587153 None:intergenic 45.0%
!! AGGTGAAGGTTGATGGAAAC+CGG + chr2_2:1587139-1587158 None:intergenic 45.0%
GAAGTCCGGCATACCAAAAT+TGG - chr2_2:1587270-1587289 Msa0229750:intron 45.0%
ACAGTCTGAACCTGTGCATA+GGG + chr2_2:1587946-1587965 None:intergenic 45.0%
GGAGTTTGTGAAGCAAGTTG+AGG - chr2_2:1588307-1588326 Msa0229750:intron 45.0%
! TTTGTGAAGCAAGTTGAGGC+AGG - chr2_2:1588311-1588330 Msa0229750:intron 45.0%
CTACCTCTAGTACTCGAACT+CGG + chr2_2:1588349-1588368 None:intergenic 45.0%
TCTAGTCTGAAAGAGCTGCT+CGG - chr2_2:1588542-1588561 Msa0229750:intron 45.0%
! GGTGTCAATTTGACTAGCCA+AGG - chr2_2:1588628-1588647 Msa0229750:intron 45.0%
! AATGGATCGTTTGTTGGTGC+AGG - chr2_2:1588667-1588686 Msa0229750:intron 45.0%
TCCCAAACATTACCAGCACT+TGG - chr2_2:1589158-1589177 Msa0229750:five_prime_UTR 45.0%
AAGCAAGAACGTCCTCCTAG+TGG - chr2_2:1582722-1582741 Msa0229750:three_prime_UTR 50.0%
AGCAAGAACGTCCTCCTAGT+GGG - chr2_2:1582723-1582742 Msa0229750:three_prime_UTR 50.0%
AATGACAGACACCCTCCAAG+AGG + chr2_2:1582750-1582769 None:intergenic 50.0%
GACACCGTCGGAGAATAAAG+TGG - chr2_2:1583866-1583885 Msa0229750:CDS 50.0%
CCAACTGAAGCCTTCATCTG+AGG + chr2_2:1584027-1584046 None:intergenic 50.0%
CCTCAGATGAAGGCTTCAGT+TGG - chr2_2:1584024-1584043 Msa0229750:intron 50.0%
GAAGGAGGAAAACGGCTTCA+TGG - chr2_2:1584347-1584366 Msa0229750:intron 50.0%
GGAAAACGGCTTCATGGCTA+AGG - chr2_2:1584353-1584372 Msa0229750:intron 50.0%
TTCTCCCCACAGAAAGCAAG+AGG - chr2_2:1584616-1584635 Msa0229750:CDS 50.0%
CCAATTGCTGCTGCAAGTCT+CGG - chr2_2:1584700-1584719 Msa0229750:intron 50.0%
TTTCACGCTGATCCACATCC+TGG - chr2_2:1586217-1586236 Msa0229750:CDS 50.0%
CAGTTCGAGCAATCTCTCAC+GGG + chr2_2:1586317-1586336 None:intergenic 50.0%
GCCTCTTAGCTACCAATTCC+AGG - chr2_2:1586703-1586722 Msa0229750:intron 50.0%
! CCCTGGAATTGGTAGCTAAG+AGG + chr2_2:1586707-1586726 None:intergenic 50.0%
TGTGAAAGGACCCCTGGAAT+TGG + chr2_2:1586718-1586737 None:intergenic 50.0%
GGAGGGCTCCAAGATCAATA+AGG + chr2_2:1586784-1586803 None:intergenic 50.0%
TCTGCTCTTGATCTGGTGAC+TGG + chr2_2:1586974-1586993 None:intergenic 50.0%
GACATTGTCTGCAATTGGGG+AGG - chr2_2:1586992-1587011 Msa0229750:CDS 50.0%
TAGCACAAGACCAGCCATTC+CGG - chr2_2:1587117-1587136 Msa0229750:CDS 50.0%
TTGATGGAAACCGGAATGGC+TGG + chr2_2:1587130-1587149 None:intergenic 50.0%
AGCAACAAGCCTTCGAGCTT+AGG + chr2_2:1587342-1587361 None:intergenic 50.0%
CCTCATGAAACCGTGCAGAA+AGG + chr2_2:1587433-1587452 None:intergenic 50.0%
CCTTTCTGCACGGTTTCATG+AGG - chr2_2:1587430-1587449 Msa0229750:CDS 50.0%
GACAGTCTGAACCTGTGCAT+AGG + chr2_2:1587947-1587966 None:intergenic 50.0%
ACTCCGAGTTCGAGTACTAG+AGG - chr2_2:1588343-1588362 Msa0229750:intron 50.0%
CGAGTTCGAGTACTAGAGGT+AGG - chr2_2:1588347-1588366 Msa0229750:intron 50.0%
!! TTGCAGGGTGTTGACACTGT+AGG - chr2_2:1588981-1589000 Msa0229750:intron 50.0%
! TCCTAGTGGGTCCTCTTGGA+GGG - chr2_2:1582736-1582755 Msa0229750:three_prime_UTR 55.0%
GCAAAATGGGCATATCCGGG+TGG - chr2_2:1584134-1584153 Msa0229750:intron 55.0%
GCTTTCTGTGGGGAGAAAGC+AGG + chr2_2:1584613-1584632 None:intergenic 55.0%
CCGAGACTTGCAGCAGCAAT+TGG + chr2_2:1584703-1584722 None:intergenic 55.0%
CCTTACAGCTGACAGATCCC+CGG + chr2_2:1586813-1586832 None:intergenic 55.0%
AAGGTCAACCCACCGAAGTC+CGG - chr2_2:1587256-1587275 Msa0229750:intron 55.0%
TTGGTATGCCGGACTTCGGT+GGG + chr2_2:1587267-1587286 None:intergenic 55.0%
TTTGGTATGCCGGACTTCGG+TGG + chr2_2:1587268-1587287 None:intergenic 55.0%
TCTAGCGTAGGGTGACACCA+AGG + chr2_2:1587687-1587706 None:intergenic 55.0%
GATTGCTGCACCCTATGCAC+AGG - chr2_2:1587933-1587952 Msa0229750:CDS 55.0%
ATAAGGCAACGACAGCCCAC+AGG - chr2_2:1588051-1588070 Msa0229750:CDS 55.0%
TAAGGCAACGACAGCCCACA+GGG - chr2_2:1588052-1588071 Msa0229750:CDS 55.0%
GCACTGCAAGATCCAAGTGC+TGG + chr2_2:1589173-1589192 None:intergenic 55.0%
! GTCCTCCTAGTGGGTCCTCT+TGG - chr2_2:1582732-1582751 Msa0229750:three_prime_UTR 60.0%
CTCCAAGAGGACCCACTAGG+AGG + chr2_2:1582737-1582756 None:intergenic 60.0%
! CTCCTAGTGGGTCCTCTTGG+AGG - chr2_2:1582735-1582754 Msa0229750:three_prime_UTR 60.0%
ACCCTCCAAGAGGACCCACT+AGG + chr2_2:1582740-1582759 None:intergenic 60.0%
TGCTGCTGCAAGTCTCGGTC+AGG - chr2_2:1584705-1584724 Msa0229750:intron 60.0%
ACAGCTGACAGATCCCCGGT+GGG + chr2_2:1586809-1586828 None:intergenic 60.0%
TACAGCTGACAGATCCCCGG+TGG + chr2_2:1586810-1586829 None:intergenic 60.0%
CCGGGGATCTGTCAGCTGTA+AGG - chr2_2:1586810-1586829 Msa0229750:intron 60.0%
GCTATCTGCCCGACGAGTTG+TGG + chr2_2:1588078-1588097 None:intergenic 60.0%
CTTGGAGCCCTCCAACCCAC+CGG - chr2_2:1586791-1586810 Msa0229750:intron 65.0%
TTGGAGCCCTCCAACCCACC+GGG - chr2_2:1586792-1586811 Msa0229750:intron 65.0%
!! CAGATCCCCGGTGGGTTGGA+GGG + chr2_2:1586801-1586820 None:intergenic 65.0%
!! ACAGATCCCCGGTGGGTTGG+AGG + chr2_2:1586802-1586821 None:intergenic 65.0%
CTGACAGATCCCCGGTGGGT+TGG + chr2_2:1586805-1586824 None:intergenic 65.0%
CCGACGAGTTGTGGCCCTGT+GGG + chr2_2:1588069-1588088 None:intergenic 65.0%
CCCACAGGGCCACAACTCGT+CGG - chr2_2:1588066-1588085 Msa0229750:CDS 65.0%
CCACAGGGCCACAACTCGTC+GGG - chr2_2:1588067-1588086 Msa0229750:CDS 65.0%
TGGAGCCCTCCAACCCACCG+GGG - chr2_2:1586793-1586812 Msa0229750:intron 70.0%
CCCGACGAGTTGTGGCCCTG+TGG + chr2_2:1588070-1588089 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 1582599 1589199 1582599 ID=Msa0229750;Name=Msa0229750
chr2_2 mRNA 1582599 1589199 1582599 ID=Msa0229750-mRNA-1;Parent=Msa0229750;Name=Msa0229750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=198|1|1|1|0.93|0.88|17|331|708
chr2_2 exon 1582599 1583003 1582599 ID=Msa0229750-mRNA-1:exon:514;Parent=Msa0229750-mRNA-1
chr2_2 exon 1583110 1583251 1583110 ID=Msa0229750-mRNA-1:exon:513;Parent=Msa0229750-mRNA-1
chr2_2 exon 1583434 1583538 1583434 ID=Msa0229750-mRNA-1:exon:512;Parent=Msa0229750-mRNA-1
chr2_2 exon 1583685 1583759 1583685 ID=Msa0229750-mRNA-1:exon:511;Parent=Msa0229750-mRNA-1
chr2_2 exon 1583844 1583905 1583844 ID=Msa0229750-mRNA-1:exon:510;Parent=Msa0229750-mRNA-1
chr2_2 exon 1584610 1584694 1584610 ID=Msa0229750-mRNA-1:exon:509;Parent=Msa0229750-mRNA-1
chr2_2 exon 1584785 1584868 1584785 ID=Msa0229750-mRNA-1:exon:508;Parent=Msa0229750-mRNA-1
chr2_2 exon 1584972 1585028 1584972 ID=Msa0229750-mRNA-1:exon:507;Parent=Msa0229750-mRNA-1
chr2_2 exon 1585429 1585599 1585429 ID=Msa0229750-mRNA-1:exon:506;Parent=Msa0229750-mRNA-1
chr2_2 exon 1585706 1585797 1585706 ID=Msa0229750-mRNA-1:exon:505;Parent=Msa0229750-mRNA-1
chr2_2 exon 1585944 1585998 1585944 ID=Msa0229750-mRNA-1:exon:504;Parent=Msa0229750-mRNA-1
chr2_2 exon 1586192 1586285 1586192 ID=Msa0229750-mRNA-1:exon:503;Parent=Msa0229750-mRNA-1
chr2_2 exon 1586465 1586558 1586465 ID=Msa0229750-mRNA-1:exon:502;Parent=Msa0229750-mRNA-1
chr2_2 exon 1586984 1587197 1586984 ID=Msa0229750-mRNA-1:exon:501;Parent=Msa0229750-mRNA-1
chr2_2 exon 1587315 1587458 1587315 ID=Msa0229750-mRNA-1:exon:500;Parent=Msa0229750-mRNA-1
chr2_2 exon 1587623 1588216 1587623 ID=Msa0229750-mRNA-1:exon:499;Parent=Msa0229750-mRNA-1
chr2_2 exon 1589017 1589199 1589017 ID=Msa0229750-mRNA-1:exon:498;Parent=Msa0229750-mRNA-1
chr2_2 five_prime_UTR 1589017 1589199 1589017 ID=Msa0229750-mRNA-1:five_prime_utr;Parent=Msa0229750-mRNA-1
chr2_2 five_prime_UTR 1588202 1588216 1588202 ID=Msa0229750-mRNA-1:five_prime_utr;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1587623 1588201 1587623 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1587315 1587458 1587315 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1586984 1587197 1586984 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1586465 1586558 1586465 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1586192 1586285 1586192 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1585944 1585998 1585944 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1585706 1585797 1585706 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1585429 1585599 1585429 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1584972 1585028 1584972 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1584785 1584868 1584785 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1584610 1584694 1584610 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1583844 1583905 1583844 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1583685 1583759 1583685 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1583434 1583538 1583434 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1583110 1583251 1583110 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 CDS 1582930 1583003 1582930 ID=Msa0229750-mRNA-1:cds;Parent=Msa0229750-mRNA-1
chr2_2 three_prime_UTR 1582599 1582929 1582599 ID=Msa0229750-mRNA-1:three_prime_utr;Parent=Msa0229750-mRNA-1
Gene Sequence

>Msa0229750

ATGGCAGTAATAATGGCTTTGCATGGTTGTTATTGTAACAATATAGAATCGGTAAATCAGCGAAGATCACTAGACAATCTTGGTTTTACAAGCTCAATTTCATCTCATAAATTGTCAAAGAATGAAAGGTCAACATCTGATAAGTTAAAGAGTGGTAAATTTCGTAGATTTGTGGTGGAAATGCGACAGACAGAAATGCCGCCATCAAAATTAGGTAATAATGGTAGAGCTGTTAAAATGGTACCGGCAACTGAGATAGCAAAAAGAAAGACACCGTCGGAGAATAAAGTGGAGACAGTCAATGGCTCAAAGCAAGCTGTTAATGGAGCAAGTTTGGTAAGAAGAGATCCTACTCCAGCATTGACAAAGACAACGAAACCTACAATCTCCAATGAACTTCCACCACTTGAAGAGCTAAAAGTTTTGCCCTCAGATGAAGGCTTCAGTTGGGCCAATGAAAATTACAGTTCCTGGCAGAGATCAATTGATGTATGGTCCTTTGTTCTTTCTTTACGTGTCCGTGTTCTTTTCGACAATGCAAAATGGGCATATCCGGGTGGCTTCACAGAAGAAAAGCAGATAAGCAGAAGGAGGAAAACGGCTTCATGGCTAAGGGAATCTGTATTACAGCTCGGTCCAACTTTTATTAAACTTGGACAGTTATCATCAACAAGGTCAGATCTATTTCCCCGTGAATTTGTGGATGAACTCGCAAAATTGCAGGACAAGGTACCTGCTTTCTCCCCACAGAAAGCAAGAGGCTTTATTGAGAGTGAATTAGGAGCTCCCATTAATGAATTGTTTAAAGAGTTTGAAGATCGGCCAATTGCTGCTGCAAGTCTCGGTCAGGTTCATCGTGCAATTCTGCACAATGGAGAAAAAGTAGTTATCAAAGTTCAAAGGCCTGGTTTGAAGAAGCTTTTTGACATTGACTTGCAAAACTTAAAGCTGATCGCGGAGTATTTTCAGAGAAGTGAAACTTTTGGTGGTCCAACTAGAGATTGGATCGGTATTTATGAAGAATGTGCAACGATTTTATACCAAGAAATTGATTATATAAATGAAGGGAAGAATGCTGATAGGTTCCGTCGTGATTTTCGAAACATAAAGTGGGTCCGAGTACCTCTGGTTTATTGGGATTATACAGCAATGAAGGTGTTGACCTTGGAGTATGTACCAGGTATTAAAATAAATCAAGTGGATACATTGACTTCTCGTGGTTATGATCGATTGAGAATCTCATCACGTGCTATTGAGGCGTACTTGATTCAGATATTGAAAACAGGTTTCTTTCACGCTGATCCACATCCTGGAAATCTTGCTATTGATGTTGATGAATCAATTATTTATTACGACTTTGGCATGATGGGGGAGATAAAATCTTTCACCCGTGAGAGATTGCTCGAACTGTTTTATTCCGTTTATGAGAAGGATGCCAAAAAGGTTATTCAATGCCTTATTGATCTTGGAGCCCTCCAACCCACCGGGGATCTGTCAGCTGTGAGGAGATCTGTACAATTTTTCTTGGACAATCTTCTAAACCAGTCACCAGATCAAGAGCAGACATTGTCTGCAATTGGGGAGGATTTGTTTGCAATAGCACAAGACCAGCCATTCCGGTTTCCATCAACCTTCACCTTTGTTATTAGAGCATTTTCTACACTTGAAGGCATAGGATACACACTCACTCCAGATTTCTCATTTGTGAAGATTGCTGCACCCTATGCACAGGAACTTCTAGATATAAGGCAACGACAGCCCACAGGGCCACAACTCGTCGGGCAGATAGCAAAACAAGCAAATGATGTAAGAACAAATTCCATGTCAATGCCATTGAGAGTTCAAAGAATAGAGGAGTTTGTGAAGCAAGTTGAGGCAGGAGATCTGAAACTCCGAGTTCGAGTACTAGAGTCTGAAAGAGCTGCTCGGAAAGCGACAGTGTTACAAATGGCTACTATGTACACGGTATTAGGAGGAACCTTTCTAAATATTGGTGTCAATTTGACTAGCCAAGGCAATCAAACTTTTGCAAATGGATCGTTTGTTGGTGCAGGTATTTTGTTCATACTATTCTTACGGTCTATGCAAAGGGTACAGAAGCTTGACAAGTTTGAGAAAATGTTATAA

Protein sequence

>Msa0229750

MAVIMALHGCYCNNIESVNQRRSLDNLGFTSSISSHKLSKNERSTSDKLKSGKFRRFVVEMRQTEMPPSKLGNNGRAVKMVPATEIAKRKTPSENKVETVNGSKQAVNGASLVRRDPTPALTKTTKPTISNELPPLEELKVLPSDEGFSWANENYSSWQRSIDVWSFVLSLRVRVLFDNAKWAYPGGFTEEKQISRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDKVPAFSPQKARGFIESELGAPINELFKEFEDRPIAAASLGQVHRAILHNGEKVVIKVQRPGLKKLFDIDLQNLKLIAEYFQRSETFGGPTRDWIGIYEECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVYWDYTAMKVLTLEYVPGIKINQVDTLTSRGYDRLRISSRAIEAYLIQILKTGFFHADPHPGNLAIDVDESIIYYDFGMMGEIKSFTRERLLELFYSVYEKDAKKVIQCLIDLGALQPTGDLSAVRRSVQFFLDNLLNQSPDQEQTLSAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGYTLTPDFSFVKIAAPYAQELLDIRQRQPTGPQLVGQIAKQANDVRTNSMSMPLRVQRIEEFVKQVEAGDLKLRVRVLESERAARKATVLQMATMYTVLGGTFLNIGVNLTSQGNQTFANGSFVGAGILFILFLRSMQRVQKLDKFEKML*