AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0005630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005630 MtrunA17_Chr1g0150551 83.791 401 18 4 1 401 2 355 0.0 608
Msa0005630 MtrunA17_Chr4g0018381 60.268 224 43 4 70 292 16 194 7.01e-89 267
Msa0005630 MtrunA17_Chr3g0089671 26.923 156 103 2 59 214 33 177 3.83e-12 67.0
Msa0005630 MtrunA17_Chr3g0143441 30.345 145 90 4 74 218 77 210 3.03e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005630 AT1G64970.1 64.350 331 73 2 67 395 60 347 3.22e-151 432
Msa0005630 AT3G18000.1 41.111 90 51 1 133 222 284 371 4.23e-13 71.2
Msa0005630 AT1G73600.1 40.000 90 52 1 133 222 283 370 1.40e-12 69.7
Msa0005630 AT1G73600.2 40.000 90 52 1 133 222 297 384 1.41e-12 69.7
Msa0005630 AT1G48600.1 40.000 90 52 1 133 222 268 355 2.20e-12 68.9
Msa0005630 AT1G48600.2 40.000 90 52 1 133 222 284 371 2.23e-12 68.9
Msa0005630 AT5G13710.1 25.806 155 104 2 60 214 34 177 4.08e-11 64.3
Msa0005630 AT5G13710.2 25.806 155 104 2 60 214 34 177 4.08e-11 64.3

Find 137 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTTTGTTGCTCCATTT+TGG 0.111682 1_1:+8300125 Msa0005630:CDS
GAAATTCTATGTGGCACTTT+TGG 0.142526 1_1:+8301366 Msa0005630:three_prime_UTR
CTGGTATATGGGAGAATATT+TGG 0.153591 1_1:+8296493 Msa0005630:CDS
AAATGCTTTCACAATTTATT+TGG 0.191484 1_1:+8301434 Msa0005630:three_prime_UTR
AGGTACCTGGCCAAGAAATT+TGG 0.197026 1_1:+8298812 Msa0005630:CDS
ACAACTTGCCCCAAATTTCT+TGG 0.230657 1_1:-8298822 None:intergenic
ACACCATGTTACTATTATTA+TGG 0.233170 1_1:-8299580 None:intergenic
ATGATGAGTCTTCTGGTATA+TGG 0.237023 1_1:+8296481 Msa0005630:CDS
TACTATTAAATCATAATTCT+AGG 0.238975 1_1:-8296151 None:intergenic
TTTATGGTTGGACAACTTAT+AGG 0.249243 1_1:-8296004 None:intergenic
GAGATTGATTACAACTTTAC+TGG 0.277224 1_1:-8299481 None:intergenic
TGGTATATGGGAGAATATTT+GGG 0.285510 1_1:+8296494 Msa0005630:CDS
CGTATCACTGCTGGCCAAAA+TGG 0.295543 1_1:-8300139 None:intergenic
GGTACCTGGCCAAGAAATTT+GGG 0.302133 1_1:+8298813 Msa0005630:CDS
TAATAGTAACATGGTGTCAT+AGG 0.305812 1_1:+8299586 Msa0005630:CDS
GCTATGCCATTGATGATAGA+AGG 0.319042 1_1:+8300788 Msa0005630:CDS
ATTGTTACTACTACATTATA+TGG 0.321238 1_1:+8296037 Msa0005630:five_prime_UTR
GTTGATGTTGGGTGTGGCAT+AGG 0.327476 1_1:+8298779 Msa0005630:CDS
ATTGAGCAATAACATGTTCT+TGG 0.335515 1_1:+8301126 Msa0005630:three_prime_UTR
TTGATGTTGGGTGTGGCATA+GGG 0.339110 1_1:+8298780 Msa0005630:CDS
TGTTGTAGGGATTCTTCATT+CGG 0.342059 1_1:-8299618 None:intergenic
GTGAGACGGCAAAAGAAATT+AGG 0.344649 1_1:-8299413 None:intergenic
AGGCTTTCGACATGTGATAA+TGG 0.352068 1_1:-8300837 None:intergenic
CATTGATGATAGAAGGATTC+AGG 0.353317 1_1:+8300795 Msa0005630:CDS
TTAAGAACAAAGTGAGTGTT+TGG 0.356229 1_1:+8301186 Msa0005630:three_prime_UTR
GGCCATTGTGGATGGATTGT+GGG 0.358426 1_1:+8301147 Msa0005630:three_prime_UTR
ACTTGAAACCATGTCCCTTC+AGG 0.364722 1_1:+8299722 Msa0005630:CDS
TTCAGCAGTAGAAGAAGAAA+AGG 0.367968 1_1:+8296357 Msa0005630:CDS
TTAGCTCTTTCAGCTTGAAC+AGG 0.369380 1_1:-8298863 None:intergenic
GCAAAAGAAATTAGGACCTT+TGG 0.371178 1_1:-8299405 None:intergenic
ATTAGGACCTTTGGTTTGTT+AGG 0.377795 1_1:-8299396 None:intergenic
GTTGTAGGGATTCTTCATTC+GGG 0.388840 1_1:-8299617 None:intergenic
GATCCTTCTCCCATTGTTGT+AGG 0.391437 1_1:-8299632 None:intergenic
TCTAATTTGTGTTATAGCAT+TGG 0.403101 1_1:+8301411 Msa0005630:three_prime_UTR
CCAACATCAACTACACTCTT+TGG 0.405985 1_1:-8298767 None:intergenic
GTTCTTGAACAAAACTCTAA+TGG 0.407112 1_1:+8301022 Msa0005630:three_prime_UTR
TTTCTTCTTCTACTGCTGAA+TGG 0.407358 1_1:-8296354 None:intergenic
ACTAGATCAAACTGGCCGTC+AGG 0.424197 1_1:-8299345 None:intergenic
TTTCATGTCTGACGTGTGTT+TGG 0.429326 1_1:-8296089 None:intergenic
GTTAGCACGGGTAGCAGCAC+CGG 0.429524 1_1:+8299551 Msa0005630:CDS
ACATTGAAGATGCTGATTAT+CGG 0.429863 1_1:-8301048 None:intergenic
TGGCCATTGTGGATGGATTG+TGG 0.429897 1_1:+8301146 Msa0005630:three_prime_UTR
GAAACAGAAACAGTAGAATC+AGG 0.439311 1_1:-8296546 None:intergenic
TGATGAGTCTTCTGGTATAT+GGG 0.439939 1_1:+8296482 Msa0005630:CDS
GCTCAGATGATCCATCAAAA+TGG 0.445713 1_1:+8298744 Msa0005630:intron
TCTGCCATGTCAGATCCTAC+TGG 0.450790 1_1:+8300962 Msa0005630:three_prime_UTR
TGAAGAATCCCTACAACAAT+GGG 0.467250 1_1:+8299623 Msa0005630:CDS
TGCTCAAGGATTAGCTGATA+AGG 0.480374 1_1:+8298898 Msa0005630:CDS
TGTCTGACGTGTGTTTGGTT+TGG 0.482358 1_1:-8296084 None:intergenic
GAAGAAGAAGAAACTTCAGT+TGG 0.484989 1_1:+8296443 Msa0005630:CDS
ATCCTTCTCCCATTGTTGTA+GGG 0.488458 1_1:-8299631 None:intergenic
CTGAATCCTTCTATCATCAA+TGG 0.489050 1_1:-8300794 None:intergenic
CTTACCACTTCGCAAGATTG+AGG 0.489090 1_1:-8300188 None:intergenic
CTGCCATGTCAGATCCTACT+GGG 0.490736 1_1:+8300963 Msa0005630:three_prime_UTR
GAAAGAAGCGATGGTGGTAA+TGG 0.494033 1_1:+8296407 Msa0005630:CDS
TGTGGACGCCGGTCGGTGAA+TGG 0.498180 1_1:-8301217 None:intergenic
AGTTTGTTGGTGAGTTAGCA+CGG 0.502667 1_1:+8299538 Msa0005630:CDS
CGCCGGTCGGTGAATGGATG+TGG 0.505409 1_1:-8301211 None:intergenic
TTGCCCCAAATTTCTTGGCC+AGG 0.505728 1_1:-8298817 None:intergenic
TGGGGTGATCATATGCATCA+TGG 0.511664 1_1:+8296513 Msa0005630:CDS
ATGAAGAATCCCTACAACAA+TGG 0.511742 1_1:+8299622 Msa0005630:CDS
TTGACCACACTAGATCAAAC+TGG 0.513141 1_1:-8299353 None:intergenic
AGGGTCATTGCGTCTATCAA+TGG 0.514463 1_1:+8296377 Msa0005630:CDS
CGTTCAGCATTAACATGGAA+GGG 0.521906 1_1:+8300160 Msa0005630:CDS
AGATTCTTAACTATCTCTTG+TGG 0.523094 1_1:-8301391 None:intergenic
AGGACATCAAATCAGCAGAT+TGG 0.524852 1_1:+8300101 Msa0005630:intron
AATAGTAACATGGTGTCATA+GGG 0.525266 1_1:+8299587 Msa0005630:CDS
TCAAACTGGCCGTCAGGGAA+TGG 0.527365 1_1:-8299339 None:intergenic
TATCAAAATAAATGACATGT+AGG 0.527639 1_1:-8300899 None:intergenic
GATGTTGGGTGTGGCATAGG+GGG 0.529490 1_1:+8298782 Msa0005630:CDS
GACTGAATAAGTGATATTGA+AGG 0.532518 1_1:+8300985 Msa0005630:three_prime_UTR
CCAAAGAGTGTAGTTGATGT+TGG 0.533283 1_1:+8298767 Msa0005630:CDS
TGATGTTGGGTGTGGCATAG+GGG 0.537744 1_1:+8298781 Msa0005630:CDS
AGCTGAAAGAGCTAATGCTC+TGG 0.537978 1_1:+8298871 Msa0005630:CDS
ATGTTCTTGGCCATTGTGGA+TGG 0.538737 1_1:+8301139 Msa0005630:three_prime_UTR
CAAAGAGTGTAGTTGATGTT+GGG 0.545229 1_1:+8298768 Msa0005630:CDS
AAATTTGGGGCAAGTTGTGT+AGG 0.545845 1_1:+8298827 Msa0005630:CDS
TCAGCAGTTGAGCACCACTC+TGG 0.547647 1_1:-8299687 None:intergenic
GCCATTGTGGATGGATTGTG+GGG 0.548971 1_1:+8301148 Msa0005630:three_prime_UTR
GGCCAAAATGGAGCAACAAA+GGG 0.551098 1_1:-8300127 None:intergenic
GTTTGATCTAGTGTGGTCAA+TGG 0.552518 1_1:+8299356 Msa0005630:CDS
AAGAACATGTTATTGCTCAA+TGG 0.553595 1_1:-8301124 None:intergenic
TGGCCAAAATGGAGCAACAA+AGG 0.554035 1_1:-8300128 None:intergenic
TTCCACATCCATTCACCGAC+CGG 0.556466 1_1:+8301209 Msa0005630:three_prime_UTR
TTAGCACGGGTAGCAGCACC+GGG 0.557174 1_1:+8299552 Msa0005630:CDS
AAGAAGAAGAAACTTCAGTT+GGG 0.559304 1_1:+8296444 Msa0005630:CDS
ACGTTCAGCATTAACATGGA+AGG 0.559901 1_1:+8300159 Msa0005630:CDS
ACTATTATTATGGTGCCACC+CGG 0.564921 1_1:-8299570 None:intergenic
TCGAAAGCCTGAAAATGCAG+AGG 0.567709 1_1:+8300850 Msa0005630:CDS
CTAGATCAAACTGGCCGTCA+GGG 0.569043 1_1:-8299344 None:intergenic
AATGCTCTGGCTGTTGCTCA+AGG 0.574221 1_1:+8298884 Msa0005630:CDS
ATTAACTACCTGAAGGGACA+TGG 0.576544 1_1:-8299730 None:intergenic
ATCCCTACAACAATGGGAGA+AGG 0.577935 1_1:+8299629 Msa0005630:CDS
TCAGCAGTAGAAGAAGAAAA+GGG 0.587307 1_1:+8296358 Msa0005630:CDS
TCTAGGTACACACGAAACTA+CGG 0.588897 1_1:-8296134 None:intergenic
AATGCTGAACGTATCACTGC+TGG 0.591367 1_1:-8300148 None:intergenic
GGCGGCGGTGAAAGAAGCGA+TGG 0.597232 1_1:+8296398 Msa0005630:CDS
TAGCTCTTTCAGCTTGAACA+GGG 0.597928 1_1:-8298862 None:intergenic
TAACATGTTCTTGGCCATTG+TGG 0.598975 1_1:+8301135 Msa0005630:three_prime_UTR
GTTGGACAACTTATAGGTGT+AGG 0.604222 1_1:-8295998 None:intergenic
TAGAGCGTCAGCAACTTGAA+AGG 0.605316 1_1:-8299310 None:intergenic
GAAAGCATGTGGACGCCGGT+CGG 0.606789 1_1:-8301224 None:intergenic
AGCGCGTGTACCGTTGCAAG+TGG 0.608895 1_1:+8296218 Msa0005630:five_prime_UTR
AGTGTAGTTGATGTTGGGTG+TGG 0.612189 1_1:+8298773 Msa0005630:CDS
ATATTAATTAACTACCTGAA+GGG 0.613275 1_1:-8299736 None:intergenic
CTTTCACAGTAGAAAGCATG+TGG 0.614726 1_1:-8301235 None:intergenic
GTTTGTTGGTGAGTTAGCAC+GGG 0.616520 1_1:+8299539 Msa0005630:CDS
TAGGTGTAGGACGCTATGAT+CGG 0.617514 1_1:-8295985 None:intergenic
ATTGCGTCTATCAATGGCGG+CGG 0.617943 1_1:+8296383 Msa0005630:CDS
GGCGGTGAAAGAAGCGATGG+TGG 0.621331 1_1:+8296401 Msa0005630:CDS
TTGTAGGGATTCTTCATTCG+GGG 0.621575 1_1:-8299616 None:intergenic
TGATACGTTCAGCATTAACA+TGG 0.622052 1_1:+8300155 Msa0005630:CDS
GGTATATGGGAGAATATTTG+GGG 0.625495 1_1:+8296495 Msa0005630:CDS
TTGTGTGTTACCACTTGCAA+CGG 0.629244 1_1:-8296228 None:intergenic
TTCACCTCAATCTTGCGAAG+TGG 0.629679 1_1:+8300184 Msa0005630:CDS
GATGATAGAAGGATTCAGGA+AGG 0.633554 1_1:+8300799 Msa0005630:CDS
ATGATAGAAGGATTCAGGAA+GGG 0.634567 1_1:+8300800 Msa0005630:CDS
TGTAGCACTGGAGTATGATG+TGG 0.635922 1_1:+8301098 Msa0005630:three_prime_UTR
ACGGCCAGTTTGATCTAGTG+TGG 0.645283 1_1:+8299349 Msa0005630:CDS
AGTAGAAAGCATGTGGACGC+CGG 0.647165 1_1:-8301228 None:intergenic
GTCATTGCGTCTATCAATGG+CGG 0.656657 1_1:+8296380 Msa0005630:CDS
CGAAAGCCTGAAAATGCAGA+GGG 0.659995 1_1:+8300851 Msa0005630:CDS
GCATATGCCTAACAAACCAA+AGG 0.660215 1_1:+8299389 Msa0005630:CDS
GTACCTGGCCAAGAAATTTG+GGG 0.663725 1_1:+8298814 Msa0005630:CDS
ATCACTTATTCAGTCCCAGT+AGG 0.671400 1_1:-8300977 None:intergenic
ATAGTATCTCTGTGGTGTTG+AGG 0.675935 1_1:-8296312 None:intergenic
ACCCCACAATCCATCCACAA+TGG 0.682695 1_1:-8301149 None:intergenic
GGTAACACACAACACAACAA+TGG 0.682999 1_1:+8296239 Msa0005630:exon
AGCACTGGAGTATGATGTGG+CGG 0.683510 1_1:+8301101 Msa0005630:three_prime_UTR
AGTCCCAGTAGGATCTGACA+TGG 0.687661 1_1:-8300966 None:intergenic
GCACCATAATAATAGTAACA+TGG 0.689337 1_1:+8299577 Msa0005630:CDS
AGTGCAGTATGCAAGTGAGA+CGG 0.690366 1_1:-8299427 None:intergenic
CTAGAACAACCATTCCCTGA+CGG 0.703190 1_1:+8299330 Msa0005630:CDS
GCACGGGTAGCAGCACCGGG+TGG 0.705737 1_1:+8299555 Msa0005630:CDS
CTAGTGTGGTCAATGGAGAG+CGG 0.706985 1_1:+8299363 Msa0005630:CDS
TAGTAATGATAGTATCTCTG+TGG 0.714916 1_1:-8296320 None:intergenic
ACAGAAACTCATCAAACGTG+CGG 0.727187 1_1:-8301290 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAATTTTGATATTTTTTA+TGG - chr1_1:8296023-8296042 None:intergenic 10.0%
!!! ATTTTGATATTTTTTATGGT+TGG - chr1_1:8296019-8296038 None:intergenic 15.0%
!! TACTATTAAATCATAATTCT+AGG - chr1_1:8296154-8296173 None:intergenic 15.0%
!!! TTTTTTTTTTCATTTTTTGC+TGG + chr1_1:8298661-8298680 Msa0005630:intron 15.0%
!! TGTAAAAAAATAGATGATAA+AGG - chr1_1:8298946-8298965 None:intergenic 15.0%
!!! AAACAATTTTTGTATGAAAT+AGG - chr1_1:8299517-8299536 None:intergenic 15.0%
!!! TTTTGAACAATTTCTTATAT+TGG + chr1_1:8299882-8299901 Msa0005630:intron 15.0%
!! ATTGTTACTACTACATTATA+TGG + chr1_1:8296037-8296056 Msa0005630:five_prime_UTR 20.0%
!! TCAAATAATTCAATCAAATC+AGG - chr1_1:8296981-8297000 None:intergenic 20.0%
!!! AAACTATCTTTGAAAACTTA+TGG - chr1_1:8297052-8297071 None:intergenic 20.0%
!! ACATTAGTGTTTATAATGAT+AGG + chr1_1:8297123-8297142 Msa0005630:intron 20.0%
!!! AATCTTCATTTTTTCATCTA+AGG - chr1_1:8297194-8297213 None:intergenic 20.0%
!! AATCATTAATTTATCACGTT+TGG + chr1_1:8297217-8297236 Msa0005630:intron 20.0%
!! ATCATTAATTTATCACGTTT+GGG + chr1_1:8297218-8297237 Msa0005630:intron 20.0%
!!! TATCGTAATTTTGATACATT+TGG - chr1_1:8297316-8297335 None:intergenic 20.0%
!! CAATAAACATATTTAACTCT+GGG - chr1_1:8297584-8297603 None:intergenic 20.0%
!!! TTTGCTGGTAAATTTTATTT+TGG + chr1_1:8298676-8298695 Msa0005630:intron 20.0%
!! ATATTAATTAACTACCTGAA+GGG - chr1_1:8299739-8299758 None:intergenic 20.0%
!! TATATTAATTAACTACCTGA+AGG - chr1_1:8299740-8299759 None:intergenic 20.0%
!! TGAACACTTATATTAGTATT+TGG + chr1_1:8299834-8299853 Msa0005630:intron 20.0%
!! TTTCCATATCAATAAGTTTA+CGG - chr1_1:8299953-8299972 None:intergenic 20.0%
!! TATTGATATGGAAAAACTTA+AGG + chr1_1:8299959-8299978 Msa0005630:intron 20.0%
!!! TATTGTTAGTATTTTGTTGA+GGG + chr1_1:8300368-8300387 Msa0005630:intron 20.0%
!! GGAGTATATAACATTAATTT+GGG - chr1_1:8300522-8300541 None:intergenic 20.0%
!! TGGAGTATATAACATTAATT+TGG - chr1_1:8300523-8300542 None:intergenic 20.0%
!!! TAAATTGATAATGATCTTGT+TGG + chr1_1:8300692-8300711 Msa0005630:intron 20.0%
!! TATCAAAATAAATGACATGT+AGG - chr1_1:8300902-8300921 None:intergenic 20.0%
!!! TTTAATATTTTTTGTAGCAC+TGG + chr1_1:8301086-8301105 Msa0005630:three_prime_UTR 20.0%
!!! AAAAGTTTTGAAATTCTATG+TGG + chr1_1:8301357-8301376 Msa0005630:three_prime_UTR 20.0%
!! TCAAAGAGTTTTCAATCATA+CGG - chr1_1:8296593-8296612 None:intergenic 25.0%
!! AAAAAAGAGAGCATATATGT+AGG + chr1_1:8296954-8296973 Msa0005630:intron 25.0%
!! AAAAAGAGAGCATATATGTA+GGG + chr1_1:8296955-8296974 Msa0005630:intron 25.0%
! ATTAAGATGTATATCCAAAC+AGG + chr1_1:8297167-8297186 Msa0005630:intron 25.0%
! TTAAGATGTATATCCAAACA+GGG + chr1_1:8297168-8297187 Msa0005630:intron 25.0%
! TCATTAATTTATCACGTTTG+GGG + chr1_1:8297219-8297238 Msa0005630:intron 25.0%
!!! TCTTTGGTTAGTTTTGTTAT+CGG + chr1_1:8297387-8297406 Msa0005630:intron 25.0%
! GTGTCTTTCATTAATCAATT+TGG + chr1_1:8297412-8297431 Msa0005630:intron 25.0%
! GTCTTATGTTAGTAATTTCA+TGG - chr1_1:8297439-8297458 None:intergenic 25.0%
!!! TTTTGGTCTTTAAATGTGTA+AGG - chr1_1:8297516-8297535 None:intergenic 25.0%
! CCAATAAACATATTTAACTC+TGG - chr1_1:8297585-8297604 None:intergenic 25.0%
! CCAGAGTTAAATATGTTTAT+TGG + chr1_1:8297582-8297601 Msa0005630:intron 25.0%
!!! ATTGGAGTAAATTGTCATTT+TGG + chr1_1:8297600-8297619 Msa0005630:intron 25.0%
!!! AATCATTTTAGTCCCTAAAT+GGG - chr1_1:8297763-8297782 None:intergenic 25.0%
!!! TAATCATTTTAGTCCCTAAA+TGG - chr1_1:8297764-8297783 None:intergenic 25.0%
! ATATTTAAACCGTGTAACTT+GGG - chr1_1:8297856-8297875 None:intergenic 25.0%
! TTACACGGTTTAAATATCTT+GGG + chr1_1:8297859-8297878 Msa0005630:intron 25.0%
!!! CTGGTAAATTTTATTTTGGT+TGG + chr1_1:8298680-8298699 Msa0005630:intron 25.0%
!!! AAATTTTATTTTGGTTGGAC+TGG + chr1_1:8298685-8298704 Msa0005630:intron 25.0%
! TATTATAATGAATCTCACCA+AGG + chr1_1:8299003-8299022 Msa0005630:intron 25.0%
! ATTATAATGAATCTCACCAA+GGG + chr1_1:8299004-8299023 Msa0005630:intron 25.0%
!! ATATGATACGTGTTTTCAAT+CGG - chr1_1:8299090-8299109 None:intergenic 25.0%
! CAAAAATTGTTTCAGTTTGT+TGG + chr1_1:8299525-8299544 Msa0005630:CDS 25.0%
! ACACCATGTTACTATTATTA+TGG - chr1_1:8299583-8299602 None:intergenic 25.0%
! TAACCGTAAACTTATTGATA+TGG + chr1_1:8299947-8299966 Msa0005630:intron 25.0%
!! GTATTGTTAGTATTTTGTTG+AGG + chr1_1:8300367-8300386 Msa0005630:intron 25.0%
! TCATATAAACCATTAACTGT+TGG - chr1_1:8300566-8300585 None:intergenic 25.0%
! ATTTCACACATATTCAGAAA+AGG - chr1_1:8300629-8300648 None:intergenic 25.0%
! TATCAATTTATGTACTCCTT+TGG - chr1_1:8300682-8300701 None:intergenic 25.0%
!! TCTAATTTGTGTTATAGCAT+TGG + chr1_1:8301411-8301430 Msa0005630:three_prime_UTR 25.0%
TTTATGGTTGGACAACTTAT+AGG - chr1_1:8296007-8296026 None:intergenic 30.0%
! AAACAAGGCATAATTTTTGC+TGG - chr1_1:8296187-8296206 None:intergenic 30.0%
CGCTATACAACAAAAAAACA+AGG - chr1_1:8296202-8296221 None:intergenic 30.0%
TAGTAATGATAGTATCTCTG+TGG - chr1_1:8296323-8296342 None:intergenic 30.0%
AAGAAGAAGAAACTTCAGTT+GGG + chr1_1:8296444-8296463 Msa0005630:CDS 30.0%
TGGTATATGGGAGAATATTT+GGG + chr1_1:8296494-8296513 Msa0005630:CDS 30.0%
GGACATAGTCAAATTCAAAA+CGG - chr1_1:8296749-8296768 None:intergenic 30.0%
AACCTATGAGTTAAATTGTC+AGG + chr1_1:8297251-8297270 Msa0005630:intron 30.0%
AACCTGACAATTTAACTCAT+AGG - chr1_1:8297256-8297275 None:intergenic 30.0%
ATGAGTTAAATTGTCAGGTT+TGG + chr1_1:8297256-8297275 Msa0005630:intron 30.0%
ATCAAAGTAGTACAAACCAA+AGG + chr1_1:8297665-8297684 Msa0005630:intron 30.0%
TATTTAAACCGTGTAACTTG+GGG - chr1_1:8297855-8297874 None:intergenic 30.0%
GATATTTAAACCGTGTAACT+TGG - chr1_1:8297857-8297876 None:intergenic 30.0%
GTTACACGGTTTAAATATCT+TGG + chr1_1:8297858-8297877 Msa0005630:intron 30.0%
TAAATCATCGTATTCAAGCT+GGG + chr1_1:8297919-8297938 Msa0005630:intron 30.0%
AGCTGAAAGGAAAGTTATAT+CGG + chr1_1:8297997-8298016 Msa0005630:intron 30.0%
!! TAGAAAAGTTGGTGGAAAAT+AGG + chr1_1:8298195-8298214 Msa0005630:intron 30.0%
TTGATCTACTCTTCTAACAA+CGG - chr1_1:8298261-8298280 None:intergenic 30.0%
TAGAAGAGTAGATCAAATAG+AGG + chr1_1:8298265-8298284 Msa0005630:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr1_1:8298320-8298339 None:intergenic 30.0%
CTTTCTAATGGTTTCTCTAA+TGG - chr1_1:8298330-8298349 None:intergenic 30.0%
CATTAGAGAAACCATTAGAA+AGG + chr1_1:8298328-8298347 Msa0005630:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr1_1:8298337-8298356 Msa0005630:intron 30.0%
! TTGGATCCAAATATGGTTTT+TGG + chr1_1:8298368-8298387 Msa0005630:intron 30.0%
GTGATTGAATATAACCACAT+AGG + chr1_1:8298498-8298517 Msa0005630:intron 30.0%
ATACATGCATCAATAACAAC+AGG - chr1_1:8298724-8298743 None:intergenic 30.0%
ATACAAGTTCTTAATACCCT+TGG - chr1_1:8299023-8299042 None:intergenic 30.0%
GAATAGAATCTACTCATATG+TGG + chr1_1:8299044-8299063 Msa0005630:intron 30.0%
TTGCATTGCATAAACAGTAA+AGG - chr1_1:8299275-8299294 None:intergenic 30.0%
GAGATTGATTACAACTTTAC+TGG - chr1_1:8299484-8299503 None:intergenic 30.0%
GCACCATAATAATAGTAACA+TGG + chr1_1:8299577-8299596 Msa0005630:CDS 30.0%
!! TAATAGTAACATGGTGTCAT+AGG + chr1_1:8299586-8299605 Msa0005630:CDS 30.0%
!! AATAGTAACATGGTGTCATA+GGG + chr1_1:8299587-8299606 Msa0005630:CDS 30.0%
! ATTCATTTTATCTTCCAGAG+TGG + chr1_1:8299673-8299692 Msa0005630:CDS 30.0%
TGCAACTATCTCATTTGAAT+TGG - chr1_1:8299995-8300014 None:intergenic 30.0%
TGTTTGATTGCTATCTATCT+AGG + chr1_1:8300081-8300100 Msa0005630:intron 30.0%
! TTTTCCTAAACAACAAATGC+TGG + chr1_1:8300345-8300364 Msa0005630:intron 30.0%
!! AATACCAGCATTTGTTGTTT+AGG - chr1_1:8300352-8300371 None:intergenic 30.0%
TAATGCAACACGGATATATA+AGG - chr1_1:8300461-8300480 None:intergenic 30.0%
ATCAAACATGTAATGCAACA+CGG - chr1_1:8300471-8300490 None:intergenic 30.0%
CCATTATCATAAATGCATAC+TGG - chr1_1:8300543-8300562 None:intergenic 30.0%
CCAGTATGCATTTATGATAA+TGG + chr1_1:8300540-8300559 Msa0005630:intron 30.0%
!!! TCATTTTTGTTATTGTGTGC+AGG + chr1_1:8300740-8300759 Msa0005630:intron 30.0%
GCAGGTCTAAAAACTATAAA+AGG + chr1_1:8300758-8300777 Msa0005630:intron 30.0%
GACTGAATAAGTGATATTGA+AGG + chr1_1:8300985-8301004 Msa0005630:three_prime_UTR 30.0%
GTTCTTGAACAAAACTCTAA+TGG + chr1_1:8301022-8301041 Msa0005630:three_prime_UTR 30.0%
! ACATTGAAGATGCTGATTAT+CGG - chr1_1:8301051-8301070 None:intergenic 30.0%
AAGAACATGTTATTGCTCAA+TGG - chr1_1:8301127-8301146 None:intergenic 30.0%
ATTGAGCAATAACATGTTCT+TGG + chr1_1:8301126-8301145 Msa0005630:three_prime_UTR 30.0%
TTAAGAACAAAGTGAGTGTT+TGG + chr1_1:8301186-8301205 Msa0005630:three_prime_UTR 30.0%
AACACGCTAAAAATTGAGTT+CGG + chr1_1:8301323-8301342 Msa0005630:three_prime_UTR 30.0%
! AAATTCTATGTGGCACTTTT+GGG + chr1_1:8301367-8301386 Msa0005630:three_prime_UTR 30.0%
AGATTCTTAACTATCTCTTG+TGG - chr1_1:8301394-8301413 None:intergenic 30.0%
TTTCTTCTTCTACTGCTGAA+TGG - chr1_1:8296357-8296376 None:intergenic 35.0%
TTCAGCAGTAGAAGAAGAAA+AGG + chr1_1:8296357-8296376 Msa0005630:CDS 35.0%
TCAGCAGTAGAAGAAGAAAA+GGG + chr1_1:8296358-8296377 Msa0005630:CDS 35.0%
GAAGAAGAAGAAACTTCAGT+TGG + chr1_1:8296443-8296462 Msa0005630:CDS 35.0%
!! GAGTTTTATGATGAGTCTTC+TGG + chr1_1:8296474-8296493 Msa0005630:CDS 35.0%
ATGATGAGTCTTCTGGTATA+TGG + chr1_1:8296481-8296500 Msa0005630:CDS 35.0%
TGATGAGTCTTCTGGTATAT+GGG + chr1_1:8296482-8296501 Msa0005630:CDS 35.0%
CTGGTATATGGGAGAATATT+TGG + chr1_1:8296493-8296512 Msa0005630:CDS 35.0%
GGTATATGGGAGAATATTTG+GGG + chr1_1:8296495-8296514 Msa0005630:CDS 35.0%
GAAACAGAAACAGTAGAATC+AGG - chr1_1:8296549-8296568 None:intergenic 35.0%
TGTCCAAATCAAGTTCACTA+CGG + chr1_1:8296764-8296783 Msa0005630:intron 35.0%
TTAATGAGTTCCACCAGTAA+TGG + chr1_1:8296801-8296820 Msa0005630:intron 35.0%
CTATCTGAACAATCCATTAC+TGG - chr1_1:8296817-8296836 None:intergenic 35.0%
TCGATTGGTGAAACAATTCT+TGG + chr1_1:8296845-8296864 Msa0005630:intron 35.0%
GTCTTGTATGTGTCTTTCTT+TGG + chr1_1:8297371-8297390 Msa0005630:intron 35.0%
!!! CTCTGCTTCATAGCTTTTTT+TGG - chr1_1:8297533-8297552 None:intergenic 35.0%
TATCATAACCCCAAGTTACA+CGG + chr1_1:8297844-8297863 Msa0005630:intron 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG - chr1_1:8297886-8297905 None:intergenic 35.0%
GTAAATCATCGTATTCAAGC+TGG + chr1_1:8297918-8297937 Msa0005630:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + chr1_1:8297984-8298003 Msa0005630:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr1_1:8297993-8298012 None:intergenic 35.0%
AGACTAGATAGGATAGGATT+AGG + chr1_1:8298132-8298151 Msa0005630:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr1_1:8298184-8298203 Msa0005630:intron 35.0%
ACCTATAGTAGAAAAGTTGG+TGG + chr1_1:8298187-8298206 Msa0005630:intron 35.0%
! TCCACCAACTTTTCTACTAT+AGG - chr1_1:8298191-8298210 None:intergenic 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_1:8298209-8298228 Msa0005630:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr1_1:8298342-8298361 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_1:8298361-8298380 Msa0005630:intron 35.0%
ATGACGCCAAAAACCATATT+TGG - chr1_1:8298377-8298396 None:intergenic 35.0%
CATCAGATTGAAGATGTAGT+TGG - chr1_1:8298540-8298559 None:intergenic 35.0%
ACATCTTCAATCTGATGTCT+TGG + chr1_1:8298543-8298562 Msa0005630:intron 35.0%
!! CTTGGTGCTACATAGAAAAA+AGG + chr1_1:8298561-8298580 Msa0005630:intron 35.0%
! CAAAGAGTGTAGTTGATGTT+GGG + chr1_1:8298768-8298787 Msa0005630:CDS 35.0%
ATCAATGTCAGTATCGTGTT+TGG + chr1_1:8299199-8299218 Msa0005630:intron 35.0%
ATGCAATGCAATGCAATTGT+AGG + chr1_1:8299284-8299303 Msa0005630:intron 35.0%
!! ATTAGGACCTTTGGTTTGTT+AGG - chr1_1:8299399-8299418 None:intergenic 35.0%
GCAAAAGAAATTAGGACCTT+TGG - chr1_1:8299408-8299427 None:intergenic 35.0%
TGTTGTAGGGATTCTTCATT+CGG - chr1_1:8299621-8299640 None:intergenic 35.0%
ATGAAGAATCCCTACAACAA+TGG + chr1_1:8299622-8299641 Msa0005630:CDS 35.0%
TGAAGAATCCCTACAACAAT+GGG + chr1_1:8299623-8299642 Msa0005630:CDS 35.0%
TCACTATGTGCTATCAAGTT+AGG + chr1_1:8300047-8300066 Msa0005630:intron 35.0%
TGATACGTTCAGCATTAACA+TGG + chr1_1:8300155-8300174 Msa0005630:CDS 35.0%
! AGACTAGTGATTTGAGACAA+GGG - chr1_1:8300246-8300265 None:intergenic 35.0%
! AAGACTAGTGATTTGAGACA+AGG - chr1_1:8300247-8300266 None:intergenic 35.0%
! TGTTAGTATTTTGTTGAGGG+TGG + chr1_1:8300371-8300390 Msa0005630:intron 35.0%
AGGAATGATAAGGAGATTGA+GGG - chr1_1:8300405-8300424 None:intergenic 35.0%
AGTTTAGGAGAGGAATGATA+AGG - chr1_1:8300415-8300434 None:intergenic 35.0%
!! TGATAATGGCCAACAGTTAA+TGG + chr1_1:8300554-8300573 Msa0005630:intron 35.0%
CTGAATCCTTCTATCATCAA+TGG - chr1_1:8300797-8300816 None:intergenic 35.0%
! CATTGATGATAGAAGGATTC+AGG + chr1_1:8300795-8300814 Msa0005630:CDS 35.0%
ATGATAGAAGGATTCAGGAA+GGG + chr1_1:8300800-8300819 Msa0005630:CDS 35.0%
! GAAATTCTATGTGGCACTTT+TGG + chr1_1:8301366-8301385 Msa0005630:three_prime_UTR 35.0%
GTTGGACAACTTATAGGTGT+AGG - chr1_1:8296001-8296020 None:intergenic 40.0%
TTTCATGTCTGACGTGTGTT+TGG - chr1_1:8296092-8296111 None:intergenic 40.0%
TCTAGGTACACACGAAACTA+CGG - chr1_1:8296137-8296156 None:intergenic 40.0%
TTGTGTGTTACCACTTGCAA+CGG - chr1_1:8296231-8296250 None:intergenic 40.0%
GGTAACACACAACACAACAA+TGG + chr1_1:8296239-8296258 Msa0005630:exon 40.0%
! ATAGTATCTCTGTGGTGTTG+AGG - chr1_1:8296315-8296334 None:intergenic 40.0%
! ACTTTTGCTTCTCTTTCGAC+TGG + chr1_1:8296612-8296631 Msa0005630:CDS 40.0%
CAACCGTAGTGAACTTGATT+TGG - chr1_1:8296770-8296789 None:intergenic 40.0%
CAAATCAAGTTCACTACGGT+TGG + chr1_1:8296768-8296787 Msa0005630:intron 40.0%
TCTGAACAATCCATTACTGG+TGG - chr1_1:8296814-8296833 None:intergenic 40.0%
CAGATAGACTTGAGTTCGAT+TGG + chr1_1:8296830-8296849 Msa0005630:intron 40.0%
GCTAGACAGTAAGAAAAGTC+TGG - chr1_1:8296871-8296890 None:intergenic 40.0%
TTAGCAGAACCCATTATCGA+AGG + chr1_1:8296902-8296921 Msa0005630:intron 40.0%
TAGCAGAACCCATTATCGAA+GGG + chr1_1:8296903-8296922 Msa0005630:intron 40.0%
TGCGTTAACCCTTCGATAAT+GGG - chr1_1:8296914-8296933 None:intergenic 40.0%
TTGCGTTAACCCTTCGATAA+TGG - chr1_1:8296915-8296934 None:intergenic 40.0%
!! TTTTCATCTAAGGCCCTGTT+TGG - chr1_1:8297184-8297203 None:intergenic 40.0%
AGTCGCTGTCATTATAGTCT+CGG + chr1_1:8297637-8297656 Msa0005630:intron 40.0%
TGACATTTCCTCACCCATTT+AGG + chr1_1:8297747-8297766 Msa0005630:intron 40.0%
GACATTTCCTCACCCATTTA+GGG + chr1_1:8297748-8297767 Msa0005630:intron 40.0%
! TTTTAGTCCCTAAATGGGTG+AGG - chr1_1:8297758-8297777 None:intergenic 40.0%
AAAGCTATGAAGCAGAGACA+TGG + chr1_1:8297787-8297806 Msa0005630:intron 40.0%
GGGTCCATAGTACAAAATGA+CGG + chr1_1:8297879-8297898 Msa0005630:intron 40.0%
ATCGGCAATGTTGTATGGTA+CGG + chr1_1:8298031-8298050 Msa0005630:intron 40.0%
GATGAGTGGTAAGACTAGAT+AGG + chr1_1:8298121-8298140 Msa0005630:intron 40.0%
GTGGTAAGACTAGATAGGAT+AGG + chr1_1:8298126-8298145 Msa0005630:intron 40.0%
TGACACCATTAGAGAAAGAG+TGG + chr1_1:8298157-8298176 Msa0005630:intron 40.0%
GACACCATTAGAGAAAGAGT+GGG + chr1_1:8298158-8298177 Msa0005630:intron 40.0%
ACACCATTAGAGAAAGAGTG+GGG + chr1_1:8298159-8298178 Msa0005630:intron 40.0%
TGGTGGAAAATAGGCTTAGA+TGG + chr1_1:8298204-8298223 Msa0005630:intron 40.0%
AGATCAAATAGAGGAGAGTC+AGG + chr1_1:8298274-8298293 Msa0005630:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_1:8298290-8298309 Msa0005630:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr1_1:8298349-8298368 Msa0005630:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - chr1_1:8298418-8298437 None:intergenic 40.0%
TTACACGACATCAACCTATG+TGG - chr1_1:8298515-8298534 None:intergenic 40.0%
GCTCAGATGATCCATCAAAA+TGG + chr1_1:8298744-8298763 Msa0005630:intron 40.0%
!! ACACTCTTTGGCCATTTTGA+TGG - chr1_1:8298758-8298777 None:intergenic 40.0%
CCAACATCAACTACACTCTT+TGG - chr1_1:8298770-8298789 None:intergenic 40.0%
! CCAAAGAGTGTAGTTGATGT+TGG + chr1_1:8298767-8298786 Msa0005630:CDS 40.0%
ACAACTTGCCCCAAATTTCT+TGG - chr1_1:8298825-8298844 None:intergenic 40.0%
! AAATTTGGGGCAAGTTGTGT+AGG + chr1_1:8298827-8298846 Msa0005630:CDS 40.0%
TAGCTCTTTCAGCTTGAACA+GGG - chr1_1:8298865-8298884 None:intergenic 40.0%
! TTAGCTCTTTCAGCTTGAAC+AGG - chr1_1:8298866-8298885 None:intergenic 40.0%
!! TGCTCAAGGATTAGCTGATA+AGG + chr1_1:8298898-8298917 Msa0005630:CDS 40.0%
TTGACCACACTAGATCAAAC+TGG - chr1_1:8299356-8299375 None:intergenic 40.0%
GTTTGATCTAGTGTGGTCAA+TGG + chr1_1:8299356-8299375 Msa0005630:CDS 40.0%
GCATATGCCTAACAAACCAA+AGG + chr1_1:8299389-8299408 Msa0005630:CDS 40.0%
GTGAGACGGCAAAAGAAATT+AGG - chr1_1:8299416-8299435 None:intergenic 40.0%
!! AGTTTGTTGGTGAGTTAGCA+CGG + chr1_1:8299538-8299557 Msa0005630:CDS 40.0%
!! ACTATTATTATGGTGCCACC+CGG - chr1_1:8299573-8299592 None:intergenic 40.0%
TTGTAGGGATTCTTCATTCG+GGG - chr1_1:8299619-8299638 None:intergenic 40.0%
GTTGTAGGGATTCTTCATTC+GGG - chr1_1:8299620-8299639 None:intergenic 40.0%
ATCCTTCTCCCATTGTTGTA+GGG - chr1_1:8299634-8299653 None:intergenic 40.0%
ATTAACTACCTGAAGGGACA+TGG - chr1_1:8299733-8299752 None:intergenic 40.0%
AGGACATCAAATCAGCAGAT+TGG + chr1_1:8300101-8300120 Msa0005630:intron 40.0%
ACGTTCAGCATTAACATGGA+AGG + chr1_1:8300159-8300178 Msa0005630:CDS 40.0%
CGTTCAGCATTAACATGGAA+GGG + chr1_1:8300160-8300179 Msa0005630:CDS 40.0%
ACGTGACACTCAATATAGGA+CGG - chr1_1:8300282-8300301 None:intergenic 40.0%
GCTAACGTGACACTCAATAT+AGG - chr1_1:8300286-8300305 None:intergenic 40.0%
TTGAGTGTCACGTTAGCAAA+AGG + chr1_1:8300289-8300308 Msa0005630:intron 40.0%
GAGGAATGATAAGGAGATTG+AGG - chr1_1:8300406-8300425 None:intergenic 40.0%
!! ATAAGGTTGGCTTGGTAGTT+GGG - chr1_1:8300444-8300463 None:intergenic 40.0%
!! TATAAGGTTGGCTTGGTAGT+TGG - chr1_1:8300445-8300464 None:intergenic 40.0%
! ACGGATATATAAGGTTGGCT+TGG - chr1_1:8300452-8300471 None:intergenic 40.0%
GCAACACGGATATATAAGGT+TGG - chr1_1:8300457-8300476 None:intergenic 40.0%
! GCTATGCCATTGATGATAGA+AGG + chr1_1:8300788-8300807 Msa0005630:CDS 40.0%
GATGATAGAAGGATTCAGGA+AGG + chr1_1:8300799-8300818 Msa0005630:CDS 40.0%
AGGCTTTCGACATGTGATAA+TGG - chr1_1:8300840-8300859 None:intergenic 40.0%
ATCACTTATTCAGTCCCAGT+AGG - chr1_1:8300980-8300999 None:intergenic 40.0%
TAACATGTTCTTGGCCATTG+TGG + chr1_1:8301135-8301154 Msa0005630:three_prime_UTR 40.0%
! CTTTCACAGTAGAAAGCATG+TGG - chr1_1:8301238-8301257 None:intergenic 40.0%
ACAGAAACTCATCAAACGTG+CGG - chr1_1:8301293-8301312 None:intergenic 40.0%
TAGGTGTAGGACGCTATGAT+CGG - chr1_1:8295988-8296007 None:intergenic 45.0%
TGTCTGACGTGTGTTTGGTT+TGG - chr1_1:8296087-8296106 None:intergenic 45.0%
AGGGTCATTGCGTCTATCAA+TGG + chr1_1:8296377-8296396 Msa0005630:CDS 45.0%
GTCATTGCGTCTATCAATGG+CGG + chr1_1:8296380-8296399 Msa0005630:CDS 45.0%
! GAAAGAAGCGATGGTGGTAA+TGG + chr1_1:8296407-8296426 Msa0005630:CDS 45.0%
TGGGGTGATCATATGCATCA+TGG + chr1_1:8296513-8296532 Msa0005630:CDS 45.0%
GGTTCTGCTAATCCAGAGTT+CGG - chr1_1:8296893-8296912 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG + chr1_1:8297922-8297941 Msa0005630:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr1_1:8297931-8297950 Msa0005630:intron 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + chr1_1:8297945-8297964 Msa0005630:intron 45.0%
CTTATCGCACAAAACACCTG+AGG - chr1_1:8297964-8297983 None:intergenic 45.0%
ATATCGGACAGCAGTCAGAT+CGG + chr1_1:8298013-8298032 Msa0005630:intron 45.0%
GTCAGATCGGCAATGTTGTA+TGG + chr1_1:8298026-8298045 Msa0005630:intron 45.0%
CACTTACTTTCCTCTCGTGT+TGG - chr1_1:8298076-8298095 None:intergenic 45.0%
CGAGAGGAAAGTAAGTGTAG+CGG + chr1_1:8298079-8298098 Msa0005630:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + chr1_1:8298087-8298106 Msa0005630:intron 45.0%
CACCATTAGAGAAAGAGTGG+GGG + chr1_1:8298160-8298179 Msa0005630:intron 45.0%
TACCCCCACTCTTTCTCTAA+TGG - chr1_1:8298165-8298184 None:intergenic 45.0%
CTTCTAACAACGGCATCTAC+AGG - chr1_1:8298251-8298270 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr1_1:8298284-8298303 Msa0005630:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_1:8298417-8298436 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - chr1_1:8298419-8298438 None:intergenic 45.0%
! AGTGTAGTTGATGTTGGGTG+TGG + chr1_1:8298773-8298792 Msa0005630:CDS 45.0%
TTGATGTTGGGTGTGGCATA+GGG + chr1_1:8298780-8298799 Msa0005630:CDS 45.0%
AGGTACCTGGCCAAGAAATT+TGG + chr1_1:8298812-8298831 Msa0005630:CDS 45.0%
GGTACCTGGCCAAGAAATTT+GGG + chr1_1:8298813-8298832 Msa0005630:CDS 45.0%
GTACCTGGCCAAGAAATTTG+GGG + chr1_1:8298814-8298833 Msa0005630:CDS 45.0%
AGCTGAAAGAGCTAATGCTC+TGG + chr1_1:8298871-8298890 Msa0005630:CDS 45.0%
! TAGAGCGTCAGCAACTTGAA+AGG - chr1_1:8299313-8299332 None:intergenic 45.0%
CTAGAACAACCATTCCCTGA+CGG + chr1_1:8299330-8299349 Msa0005630:CDS 45.0%
AGTGCAGTATGCAAGTGAGA+CGG - chr1_1:8299430-8299449 None:intergenic 45.0%
! GTTTGTTGGTGAGTTAGCAC+GGG + chr1_1:8299539-8299558 Msa0005630:CDS 45.0%
ATCCCTACAACAATGGGAGA+AGG + chr1_1:8299629-8299648 Msa0005630:CDS 45.0%
GATCCTTCTCCCATTGTTGT+AGG - chr1_1:8299635-8299654 None:intergenic 45.0%
ACTTGAAACCATGTCCCTTC+AGG + chr1_1:8299722-8299741 Msa0005630:CDS 45.0%
! CTCCCTTTGTTGCTCCATTT+TGG + chr1_1:8300125-8300144 Msa0005630:CDS 45.0%
GGCCAAAATGGAGCAACAAA+GGG - chr1_1:8300130-8300149 None:intergenic 45.0%
TGGCCAAAATGGAGCAACAA+AGG - chr1_1:8300131-8300150 None:intergenic 45.0%
AATGCTGAACGTATCACTGC+TGG - chr1_1:8300151-8300170 None:intergenic 45.0%
TTCACCTCAATCTTGCGAAG+TGG + chr1_1:8300184-8300203 Msa0005630:CDS 45.0%
CTTACCACTTCGCAAGATTG+AGG - chr1_1:8300191-8300210 None:intergenic 45.0%
TCGAAAGCCTGAAAATGCAG+AGG + chr1_1:8300850-8300869 Msa0005630:CDS 45.0%
CGAAAGCCTGAAAATGCAGA+GGG + chr1_1:8300851-8300870 Msa0005630:CDS 45.0%
! CATTGACCCTCTGCATTTTC+AGG - chr1_1:8300860-8300879 None:intergenic 45.0%
! TGTAGCACTGGAGTATGATG+TGG + chr1_1:8301098-8301117 Msa0005630:three_prime_UTR 45.0%
ATGTTCTTGGCCATTGTGGA+TGG + chr1_1:8301139-8301158 Msa0005630:three_prime_UTR 45.0%
!!! TCATTATTTAAAATTATTAT+TGG + chr1_1:8299167-8299186 Msa0005630:intron 5.0%
ATTGCGTCTATCAATGGCGG+CGG + chr1_1:8296383-8296402 Msa0005630:CDS 50.0%
TCACTACGGTTGGACTCAAG+TGG + chr1_1:8296778-8296797 Msa0005630:intron 50.0%
CTTACTGTCTAGCCGAACTC+TGG + chr1_1:8296878-8296897 Msa0005630:intron 50.0%
TGAGTCTTCGAGTGTGCCTT+TGG - chr1_1:8297684-8297703 None:intergenic 50.0%
TCCAACTTTCACCTCGTCGT+GGG - chr1_1:8297819-8297838 None:intergenic 50.0%
TGTTGTATGGTACGGAGTGC+TGG + chr1_1:8298039-8298058 Msa0005630:intron 50.0%
! GTTGTATGGTACGGAGTGCT+GGG + chr1_1:8298040-8298059 Msa0005630:intron 50.0%
AGGATGTTGTGCTGGATGAG+TGG + chr1_1:8298107-8298126 Msa0005630:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_1:8298413-8298432 None:intergenic 50.0%
GTTGATGTTGGGTGTGGCAT+AGG + chr1_1:8298779-8298798 Msa0005630:CDS 50.0%
TGATGTTGGGTGTGGCATAG+GGG + chr1_1:8298781-8298800 Msa0005630:CDS 50.0%
TTGCCCCAAATTTCTTGGCC+AGG - chr1_1:8298820-8298839 None:intergenic 50.0%
AATGCTCTGGCTGTTGCTCA+AGG + chr1_1:8298884-8298903 Msa0005630:CDS 50.0%
GTCTGACTGCAACGTGATAC+TGG + chr1_1:8299119-8299138 Msa0005630:intron 50.0%
TATGTCAGTGCTTCATCGCG+TGG + chr1_1:8299234-8299253 Msa0005630:intron 50.0%
CTAGATCAAACTGGCCGTCA+GGG - chr1_1:8299347-8299366 None:intergenic 50.0%
ACTAGATCAAACTGGCCGTC+AGG - chr1_1:8299348-8299367 None:intergenic 50.0%
ACGGCCAGTTTGATCTAGTG+TGG + chr1_1:8299349-8299368 Msa0005630:CDS 50.0%
CTAGTGTGGTCAATGGAGAG+CGG + chr1_1:8299363-8299382 Msa0005630:CDS 50.0%
CGTATCACTGCTGGCCAAAA+TGG - chr1_1:8300142-8300161 None:intergenic 50.0%
GACGCTCGATATGTGACCAA+AGG + chr1_1:8300663-8300682 Msa0005630:intron 50.0%
TCTGCCATGTCAGATCCTAC+TGG + chr1_1:8300962-8300981 Msa0005630:three_prime_UTR 50.0%
CTGCCATGTCAGATCCTACT+GGG + chr1_1:8300963-8300982 Msa0005630:three_prime_UTR 50.0%
AGTCCCAGTAGGATCTGACA+TGG - chr1_1:8300969-8300988 None:intergenic 50.0%
! AGCACTGGAGTATGATGTGG+CGG + chr1_1:8301101-8301120 Msa0005630:three_prime_UTR 50.0%
!! TGGCCATTGTGGATGGATTG+TGG + chr1_1:8301146-8301165 Msa0005630:three_prime_UTR 50.0%
!! GGCCATTGTGGATGGATTGT+GGG + chr1_1:8301147-8301166 Msa0005630:three_prime_UTR 50.0%
!! GCCATTGTGGATGGATTGTG+GGG + chr1_1:8301148-8301167 Msa0005630:three_prime_UTR 50.0%
ACCCCACAATCCATCCACAA+TGG - chr1_1:8301152-8301171 None:intergenic 50.0%
TTCCACATCCATTCACCGAC+CGG + chr1_1:8301209-8301228 Msa0005630:three_prime_UTR 50.0%
! AGTAGAAAGCATGTGGACGC+CGG - chr1_1:8301231-8301250 None:intergenic 50.0%
CATGGACATTTCCCACGACG+AGG + chr1_1:8297805-8297824 Msa0005630:intron 55.0%
TCCCACGACGAGGTGAAAGT+TGG + chr1_1:8297815-8297834 Msa0005630:intron 55.0%
CTCCAACTTTCACCTCGTCG+TGG - chr1_1:8297820-8297839 None:intergenic 55.0%
CGGTTAAGAGCCAACACGAG+AGG + chr1_1:8298063-8298082 Msa0005630:intron 55.0%
CGGAGATGAGGATGTTGTGC+TGG + chr1_1:8298099-8298118 Msa0005630:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_1:8298405-8298424 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_1:8298404-8298423 Msa0005630:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_1:8298405-8298424 Msa0005630:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_1:8298411-8298430 Msa0005630:intron 55.0%
GATGTTGGGTGTGGCATAGG+GGG + chr1_1:8298782-8298801 Msa0005630:CDS 55.0%
GTGGCATAGGGGGAAGTTCA+AGG + chr1_1:8298792-8298811 Msa0005630:CDS 55.0%
! AGGGGGAAGTTCAAGGTACC+TGG + chr1_1:8298799-8298818 Msa0005630:CDS 55.0%
!! CGGAAGTGTCAGTGCTGCAT+AGG - chr1_1:8299070-8299089 None:intergenic 55.0%
TCAAACTGGCCGTCAGGGAA+TGG - chr1_1:8299342-8299361 None:intergenic 55.0%
TCAGCAGTTGAGCACCACTC+TGG - chr1_1:8299690-8299709 None:intergenic 55.0%
GTAGTTGGGTGGGGGAGTTT+AGG - chr1_1:8300430-8300449 None:intergenic 55.0%
!! TTGGCTTGGTAGTTGGGTGG+GGG - chr1_1:8300438-8300457 None:intergenic 55.0%
!! GTTGGCTTGGTAGTTGGGTG+GGG - chr1_1:8300439-8300458 None:intergenic 55.0%
!! GGTTGGCTTGGTAGTTGGGT+GGG - chr1_1:8300440-8300459 None:intergenic 55.0%
!! AGGTTGGCTTGGTAGTTGGG+TGG - chr1_1:8300441-8300460 None:intergenic 55.0%
AGCGCGTGTACCGTTGCAAG+TGG + chr1_1:8296218-8296237 Msa0005630:five_prime_UTR 60.0%
GGCGGTGAAAGAAGCGATGG+TGG + chr1_1:8296401-8296420 Msa0005630:CDS 60.0%
!! GTATGGTACGGAGTGCTGGG+CGG + chr1_1:8298043-8298062 Msa0005630:intron 60.0%
GTTAGCACGGGTAGCAGCAC+CGG + chr1_1:8299551-8299570 Msa0005630:CDS 60.0%
TTAGCACGGGTAGCAGCACC+GGG + chr1_1:8299552-8299571 Msa0005630:CDS 60.0%
TGGGTGGGGGAGTTTAGGAG+AGG - chr1_1:8300425-8300444 None:intergenic 60.0%
! GAAAGCATGTGGACGCCGGT+CGG - chr1_1:8301227-8301246 None:intergenic 60.0%
GGCGGCGGTGAAAGAAGCGA+TGG + chr1_1:8296398-8296417 Msa0005630:CDS 65.0%
CGCCGGTCGGTGAATGGATG+TGG - chr1_1:8301214-8301233 None:intergenic 65.0%
TGTGGACGCCGGTCGGTGAA+TGG - chr1_1:8301220-8301239 None:intergenic 65.0%
! GCACGGGTAGCAGCACCGGG+TGG + chr1_1:8299555-8299574 Msa0005630:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8295985 8301455 8295985 ID=Msa0005630;Name=Msa0005630
chr1_1 mRNA 8295985 8301455 8295985 ID=Msa0005630-mRNA-1;Parent=Msa0005630;Name=Msa0005630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=273|1|0.8|1|1|1|5|575|401
chr1_1 exon 8295985 8296633 8295985 ID=Msa0005630-mRNA-1:exon:2927;Parent=Msa0005630-mRNA-1
chr1_1 exon 8298750 8298919 8298750 ID=Msa0005630-mRNA-1:exon:2928;Parent=Msa0005630-mRNA-1
chr1_1 exon 8299306 8299743 8299306 ID=Msa0005630-mRNA-1:exon:2929;Parent=Msa0005630-mRNA-1
chr1_1 exon 8300103 8300205 8300103 ID=Msa0005630-mRNA-1:exon:2930;Parent=Msa0005630-mRNA-1
chr1_1 exon 8300762 8301455 8300762 ID=Msa0005630-mRNA-1:exon:2931;Parent=Msa0005630-mRNA-1
chr1_1 five_prime_UTR 8295985 8296257 8295985 ID=Msa0005630-mRNA-1:five_prime_utr;Parent=Msa0005630-mRNA-1
chr1_1 CDS 8296258 8296633 8296258 ID=Msa0005630-mRNA-1:cds;Parent=Msa0005630-mRNA-1
chr1_1 CDS 8298750 8298919 8298750 ID=Msa0005630-mRNA-1:cds;Parent=Msa0005630-mRNA-1
chr1_1 CDS 8299306 8299743 8299306 ID=Msa0005630-mRNA-1:cds;Parent=Msa0005630-mRNA-1
chr1_1 CDS 8300103 8300205 8300103 ID=Msa0005630-mRNA-1:cds;Parent=Msa0005630-mRNA-1
chr1_1 CDS 8300762 8300880 8300762 ID=Msa0005630-mRNA-1:cds;Parent=Msa0005630-mRNA-1
chr1_1 three_prime_UTR 8300881 8301455 8300881 ID=Msa0005630-mRNA-1:three_prime_utr;Parent=Msa0005630-mRNA-1
Gene Sequence

>Msa0005630

ATGGTGACGACAGCGAGAATCTCTTCTTCATTATTACACTGCACACACACATTTCCTCAACACCACAGAGATACTATCATTACTACTACTACTGTACCATTCAGCAGTAGAAGAAGAAAAGGGTCATTGCGTCTATCAATGGCGGCGGTGAAAGAAGCGATGGTGGTAATGGAAGAAGAAGAGAAGAAGAAGAAGAAACTTCAGTTGGGTATTGCTGAGTTTTATGATGAGTCTTCTGGTATATGGGAGAATATTTGGGGTGATCATATGCATCATGGTTTTTATGATCCTGATTCTACTGTTTCTGTTTCTGATCATCGTGCTGCTCAGATCCGTATGATTGAAAACTCTTTGACTTTTGCTTCTCTTTCGACTGATGATCCATCAAAATGGCCAAAGAGTGTAGTTGATGTTGGGTGTGGCATAGGGGGAAGTTCAAGGTACCTGGCCAAGAAATTTGGGGCAAGTTGTGTAGGCATCACTCTCAGCCCTGTTCAAGCTGAAAGAGCTAATGCTCTGGCTGTTGCTCAAGGATTAGCTGATAAGGTGTCCTTTCAAGTTGCTGACGCTCTAGAACAACCATTCCCTGACGGCCAGTTTGATCTAGTGTGGTCAATGGAGAGCGGAGAGCATATGCCTAACAAACCAAAGGTCCTAATTTCTTTTGCCGTCTCACTTGCATACTGCACTTCACTTTCTTTGATATTTTCTGTTCTTTATGCCAGTAAAGTTGTAATCAATCTCATTTCAGTTTCCTATTTCATACAAAAATTGTTTCAGTTTGTTGGTGAGTTAGCACGGGTAGCAGCACCGGGTGGCACCATAATAATAGTAACATGGTGTCATAGGGATCTTGCCCCGAATGAAGAATCCCTACAACAATGGGAGAAGGATCTCTTGAAGAAGATATGTGATTCATTTTATCTTCCAGAGTGGTGCTCAACTGCTGATTATGTCAAATTACTTGAAACCATGTCCCTTCAGGACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGTTCAGCATTAACATGGAAGGGTTTCACCTCAATCTTGCGAAGTGGTCTAAAAACTATAAAAGGAGCTTTAGCTATGCCATTGATGATAGAAGGATTCAGGAAGGGTGTGATTAAGTTTGCCATTATCACATGTCGAAAGCCTGAAAATGCAGAGGGTCAATGA
Protein sequence

>Msa0005630

MVTTARISSSLLHCTHTFPQHHRDTIITTTTVPFSSRRRKGSLRLSMAAVKEAMVVMEEEEKKKKKLQLGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIENSLTFASLSTDDPSKWPKSVVDVGCGIGGSSRYLAKKFGASCVGITLSPVQAERANALAVAQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPNKPKVLISFAVSLAYCTSLSLIFSVLYASKVVINLISVSYFIQKLFQFVGELARVAAPGGTIIIVTWCHRDLAPNEESLQQWEKDLLKKICDSFYLPEWCSTADYVKLLETMSLQDIKSADWSPFVAPFWPAVIRSALTWKGFTSILRSGLKTIKGALAMPLMIEGFRKGVIKFAIITCRKPENAEGQ*