AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0096570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096570 MtrunA17_Chr1g0150551 83.791 401 18 4 1 401 2 355 0.0 608
Msa0096570 MtrunA17_Chr4g0018381 60.268 224 43 4 70 292 16 194 7.01e-89 267
Msa0096570 MtrunA17_Chr3g0089671 26.923 156 103 2 59 214 33 177 3.83e-12 67.0
Msa0096570 MtrunA17_Chr3g0143441 30.345 145 90 4 74 218 77 210 3.03e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096570 AT1G64970.1 64.350 331 73 2 67 395 60 347 3.22e-151 432
Msa0096570 AT3G18000.1 41.111 90 51 1 133 222 284 371 4.23e-13 71.2
Msa0096570 AT1G73600.1 40.000 90 52 1 133 222 283 370 1.40e-12 69.7
Msa0096570 AT1G73600.2 40.000 90 52 1 133 222 297 384 1.41e-12 69.7
Msa0096570 AT1G48600.1 40.000 90 52 1 133 222 268 355 2.20e-12 68.9
Msa0096570 AT1G48600.2 40.000 90 52 1 133 222 284 371 2.23e-12 68.9
Msa0096570 AT5G13710.1 25.806 155 104 2 60 214 34 177 4.08e-11 64.3
Msa0096570 AT5G13710.2 25.806 155 104 2 60 214 34 177 4.08e-11 64.3

Find 137 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTTTGTTGCTCCATTT+TGG 0.111682 1_3:-2249849 Msa0096570:CDS
GAAATTCTATGTGGCACTTT+TGG 0.142526 1_3:-2248608 Msa0096570:three_prime_UTR
CTGGTATATGGGAGAATATT+TGG 0.153591 1_3:-2253480 Msa0096570:CDS
AAATGCTTTCACAATTTATT+TGG 0.191484 1_3:-2248540 None:intergenic
AGGTACCTGGCCAAGAAATT+TGG 0.197026 1_3:-2251162 Msa0096570:CDS
ACAACTTGCCCCAAATTTCT+TGG 0.230657 1_3:+2251152 None:intergenic
ACACCATGTTACTATTATTA+TGG 0.233170 1_3:+2250394 None:intergenic
ATGATGAGTCTTCTGGTATA+TGG 0.237023 1_3:-2253492 Msa0096570:CDS
TACTATTAAATCATAATTCT+AGG 0.238975 1_3:+2253822 None:intergenic
TTTATGGTTGGACAACTTAT+AGG 0.249243 1_3:+2253966 None:intergenic
GAGATTGATTACAACTTTAC+TGG 0.277224 1_3:+2250493 None:intergenic
TGGTATATGGGAGAATATTT+GGG 0.285510 1_3:-2253479 Msa0096570:CDS
CGTATCACTGCTGGCCAAAA+TGG 0.295543 1_3:+2249835 None:intergenic
AAAATTGTTACTACATTATA+TGG 0.301860 1_3:-2253936 Msa0096570:five_prime_UTR
GGTACCTGGCCAAGAAATTT+GGG 0.302133 1_3:-2251161 Msa0096570:CDS
TAATAGTAACATGGTGTCAT+AGG 0.305812 1_3:-2250388 Msa0096570:CDS
GCTATGCCATTGATGATAGA+AGG 0.319042 1_3:-2249186 Msa0096570:CDS
GTTGATGTTGGGTGTGGCAT+AGG 0.327476 1_3:-2251195 Msa0096570:CDS
ATTGAGCAATAACATGTTCT+TGG 0.335515 1_3:-2248848 Msa0096570:three_prime_UTR
TTGATGTTGGGTGTGGCATA+GGG 0.339110 1_3:-2251194 Msa0096570:CDS
TGTTGTAGGGATTCTTCATT+CGG 0.342059 1_3:+2250356 None:intergenic
GTGAGACGGCAAAAGAAATT+AGG 0.344649 1_3:+2250561 None:intergenic
AGGCTTTCGACATGTGATAA+TGG 0.352068 1_3:+2249137 None:intergenic
CATTGATGATAGAAGGATTC+AGG 0.353317 1_3:-2249179 Msa0096570:CDS
TTAAGAACAAAGTGAGTGTT+TGG 0.356229 1_3:-2248788 Msa0096570:three_prime_UTR
GGCCATTGTGGATGGATTGT+GGG 0.358426 1_3:-2248827 Msa0096570:three_prime_UTR
ACTTGAAACCATGTCCCTTC+AGG 0.364722 1_3:-2250252 Msa0096570:intron
TTCAGCAGTAGAAGAAGAAA+AGG 0.367968 1_3:-2253616 Msa0096570:CDS
TTAGCTCTTTCAGCTTGAAC+AGG 0.369380 1_3:+2251111 None:intergenic
GCAAAAGAAATTAGGACCTT+TGG 0.371178 1_3:+2250569 None:intergenic
ATTAGGACCTTTGGTTTGTT+AGG 0.377795 1_3:+2250578 None:intergenic
GTTGTAGGGATTCTTCATTC+GGG 0.388840 1_3:+2250357 None:intergenic
GATCCTTCTCCCATTGTTGT+AGG 0.391437 1_3:+2250342 None:intergenic
TCTAATTTGTGTTATAGCAT+TGG 0.403101 1_3:-2248563 Msa0096570:three_prime_UTR
CCAACATCAACTACACTCTT+TGG 0.405985 1_3:+2251207 None:intergenic
GTTCTTGAACAAAACTCTAA+TGG 0.407112 1_3:-2248952 Msa0096570:three_prime_UTR
TTTCTTCTTCTACTGCTGAA+TGG 0.407358 1_3:+2253619 None:intergenic
ACTAGATCAAACTGGCCGTC+AGG 0.424197 1_3:+2250629 None:intergenic
TTTCATGTCTGACGTGTGTT+TGG 0.429326 1_3:+2253884 None:intergenic
GTTAGCACGGGTAGCAGCAC+CGG 0.429524 1_3:-2250423 Msa0096570:CDS
ACATTGAAGATGCTGATTAT+CGG 0.429863 1_3:+2248926 None:intergenic
TGGCCATTGTGGATGGATTG+TGG 0.429897 1_3:-2248828 Msa0096570:three_prime_UTR
GAAACAGAAACAGTAGAATC+AGG 0.439311 1_3:+2253427 None:intergenic
TGATGAGTCTTCTGGTATAT+GGG 0.439939 1_3:-2253491 Msa0096570:CDS
GCTCAGATGATCCATCAAAA+TGG 0.445713 1_3:-2251230 Msa0096570:intron
TCTGCCATGTCAGATCCTAC+TGG 0.450790 1_3:-2249012 Msa0096570:three_prime_UTR
TGAAGAATCCCTACAACAAT+GGG 0.467250 1_3:-2250351 Msa0096570:CDS
TGCTCAAGGATTAGCTGATA+AGG 0.480374 1_3:-2251076 Msa0096570:intron
TGTCTGACGTGTGTTTGGTT+TGG 0.482358 1_3:+2253889 None:intergenic
GAAGAAGAAGAAACTTCAGT+TGG 0.484989 1_3:-2253530 Msa0096570:CDS
ATCCTTCTCCCATTGTTGTA+GGG 0.488458 1_3:+2250343 None:intergenic
CTGAATCCTTCTATCATCAA+TGG 0.489050 1_3:+2249180 None:intergenic
CTTACCACTTCGCAAGATTG+AGG 0.489090 1_3:+2249786 None:intergenic
CTGCCATGTCAGATCCTACT+GGG 0.490736 1_3:-2249011 Msa0096570:three_prime_UTR
GAAAGAAGCGATGGTGGTAA+TGG 0.494033 1_3:-2253566 Msa0096570:CDS
TGTGGACGCCGGTCGGTGAA+TGG 0.498180 1_3:+2248757 None:intergenic
AGTTTGTTGGTGAGTTAGCA+CGG 0.502667 1_3:-2250436 Msa0096570:CDS
CGCCGGTCGGTGAATGGATG+TGG 0.505409 1_3:+2248763 None:intergenic
TTGCCCCAAATTTCTTGGCC+AGG 0.505728 1_3:+2251157 None:intergenic
TGGGGTGATCATATGCATCA+TGG 0.511664 1_3:-2253460 Msa0096570:CDS
ATGAAGAATCCCTACAACAA+TGG 0.511742 1_3:-2250352 Msa0096570:CDS
TTGACCACACTAGATCAAAC+TGG 0.513141 1_3:+2250621 None:intergenic
AGGGTCATTGCGTCTATCAA+TGG 0.514463 1_3:-2253596 Msa0096570:CDS
CGTTCAGCATTAACATGGAA+GGG 0.521906 1_3:-2249814 Msa0096570:CDS
AGATTCTTAACTATCTCTTG+TGG 0.523094 1_3:+2248583 None:intergenic
AGGACATCAAATCAGCAGAT+TGG 0.524852 1_3:-2249873 Msa0096570:CDS
AATAGTAACATGGTGTCATA+GGG 0.525266 1_3:-2250387 Msa0096570:CDS
TCAAACTGGCCGTCAGGGAA+TGG 0.527365 1_3:+2250635 None:intergenic
TATCAAAATAAATGACATGT+AGG 0.527639 1_3:+2249075 None:intergenic
GATGTTGGGTGTGGCATAGG+GGG 0.529490 1_3:-2251192 Msa0096570:CDS
GACTGAATAAGTGATATTGA+AGG 0.532518 1_3:-2248989 Msa0096570:three_prime_UTR
CCAAAGAGTGTAGTTGATGT+TGG 0.533283 1_3:-2251207 Msa0096570:CDS
TGATGTTGGGTGTGGCATAG+GGG 0.537744 1_3:-2251193 Msa0096570:CDS
AGCTGAAAGAGCTAATGCTC+TGG 0.537978 1_3:-2251103 Msa0096570:CDS
ATGTTCTTGGCCATTGTGGA+TGG 0.538737 1_3:-2248835 Msa0096570:three_prime_UTR
CAAAGAGTGTAGTTGATGTT+GGG 0.545229 1_3:-2251206 Msa0096570:CDS
AAATTTGGGGCAAGTTGTGT+AGG 0.545845 1_3:-2251147 Msa0096570:CDS
TCAGCAGTTGAGCACCACTC+TGG 0.547647 1_3:+2250287 None:intergenic
GCCATTGTGGATGGATTGTG+GGG 0.548971 1_3:-2248826 Msa0096570:three_prime_UTR
GGCCAAAATGGAGCAACAAA+GGG 0.551098 1_3:+2249847 None:intergenic
GTTTGATCTAGTGTGGTCAA+TGG 0.552518 1_3:-2250618 Msa0096570:CDS
AAGAACATGTTATTGCTCAA+TGG 0.553595 1_3:+2248850 None:intergenic
TGGCCAAAATGGAGCAACAA+AGG 0.554035 1_3:+2249846 None:intergenic
TTCCACATCCATTCACCGAC+CGG 0.556466 1_3:-2248765 Msa0096570:three_prime_UTR
TTAGCACGGGTAGCAGCACC+GGG 0.557174 1_3:-2250422 Msa0096570:CDS
AAGAAGAAGAAACTTCAGTT+GGG 0.559304 1_3:-2253529 Msa0096570:CDS
ACGTTCAGCATTAACATGGA+AGG 0.559901 1_3:-2249815 Msa0096570:CDS
ACTATTATTATGGTGCCACC+CGG 0.564921 1_3:+2250404 None:intergenic
TCGAAAGCCTGAAAATGCAG+AGG 0.567709 1_3:-2249124 Msa0096570:CDS
CTAGATCAAACTGGCCGTCA+GGG 0.569043 1_3:+2250630 None:intergenic
AATGCTCTGGCTGTTGCTCA+AGG 0.574221 1_3:-2251090 Msa0096570:CDS
ATTAACTACCTGAAGGGACA+TGG 0.576544 1_3:+2250244 None:intergenic
ATCCCTACAACAATGGGAGA+AGG 0.577935 1_3:-2250345 Msa0096570:CDS
TCAGCAGTAGAAGAAGAAAA+GGG 0.587307 1_3:-2253615 Msa0096570:CDS
TCTAGGTACACACGAAACTA+CGG 0.588897 1_3:+2253839 None:intergenic
AATGCTGAACGTATCACTGC+TGG 0.591367 1_3:+2249826 None:intergenic
GGCGGCGGTGAAAGAAGCGA+TGG 0.597232 1_3:-2253575 Msa0096570:CDS
TAGCTCTTTCAGCTTGAACA+GGG 0.597928 1_3:+2251112 None:intergenic
TAACATGTTCTTGGCCATTG+TGG 0.598975 1_3:-2248839 Msa0096570:three_prime_UTR
GTTGGACAACTTATAGGTGT+AGG 0.604222 1_3:+2253972 None:intergenic
TAGAGCGTCAGCAACTTGAA+AGG 0.605316 1_3:+2250664 None:intergenic
GAAAGCATGTGGACGCCGGT+CGG 0.606789 1_3:+2248750 None:intergenic
AGCGCGTGTACCGTTGCAAG+TGG 0.608895 1_3:-2253755 Msa0096570:five_prime_UTR
AGTGTAGTTGATGTTGGGTG+TGG 0.612189 1_3:-2251201 Msa0096570:CDS
ATATTAATTAACTACCTGAA+GGG 0.613275 1_3:+2250238 None:intergenic
CTTTCACAGTAGAAAGCATG+TGG 0.614726 1_3:+2248739 None:intergenic
GTTTGTTGGTGAGTTAGCAC+GGG 0.616520 1_3:-2250435 Msa0096570:CDS
TAGGTGTAGGACGCTATGAT+CGG 0.617514 1_3:+2253985 None:intergenic
ATTGCGTCTATCAATGGCGG+CGG 0.617943 1_3:-2253590 Msa0096570:CDS
GGCGGTGAAAGAAGCGATGG+TGG 0.621331 1_3:-2253572 Msa0096570:CDS
TTGTAGGGATTCTTCATTCG+GGG 0.621575 1_3:+2250358 None:intergenic
TGATACGTTCAGCATTAACA+TGG 0.622052 1_3:-2249819 Msa0096570:CDS
GGTATATGGGAGAATATTTG+GGG 0.625495 1_3:-2253478 Msa0096570:CDS
TTGTGTGTTACCACTTGCAA+CGG 0.629244 1_3:+2253745 None:intergenic
TTCACCTCAATCTTGCGAAG+TGG 0.629679 1_3:-2249790 Msa0096570:intron
GATGATAGAAGGATTCAGGA+AGG 0.633554 1_3:-2249175 Msa0096570:CDS
ATGATAGAAGGATTCAGGAA+GGG 0.634567 1_3:-2249174 Msa0096570:CDS
TGTAGCACTGGAGTATGATG+TGG 0.635922 1_3:-2248876 Msa0096570:three_prime_UTR
ACGGCCAGTTTGATCTAGTG+TGG 0.645283 1_3:-2250625 Msa0096570:CDS
AGTAGAAAGCATGTGGACGC+CGG 0.647165 1_3:+2248746 None:intergenic
GTCATTGCGTCTATCAATGG+CGG 0.656657 1_3:-2253593 Msa0096570:CDS
CGAAAGCCTGAAAATGCAGA+GGG 0.659995 1_3:-2249123 Msa0096570:CDS
GCATATGCCTAACAAACCAA+AGG 0.660215 1_3:-2250585 Msa0096570:CDS
GTACCTGGCCAAGAAATTTG+GGG 0.663725 1_3:-2251160 Msa0096570:CDS
ATCACTTATTCAGTCCCAGT+AGG 0.671400 1_3:+2248997 None:intergenic
ATAGTATCTCTGTGGTGTTG+AGG 0.675935 1_3:+2253661 None:intergenic
ACCCCACAATCCATCCACAA+TGG 0.682695 1_3:+2248825 None:intergenic
GGTAACACACAACACAACAA+TGG 0.682999 1_3:-2253734 Msa0096570:exon
AGCACTGGAGTATGATGTGG+CGG 0.683510 1_3:-2248873 Msa0096570:three_prime_UTR
AGTCCCAGTAGGATCTGACA+TGG 0.687661 1_3:+2249008 None:intergenic
GCACCATAATAATAGTAACA+TGG 0.689337 1_3:-2250397 Msa0096570:CDS
AGTGCAGTATGCAAGTGAGA+CGG 0.690366 1_3:+2250547 None:intergenic
CTAGAACAACCATTCCCTGA+CGG 0.703190 1_3:-2250644 Msa0096570:CDS
GCACGGGTAGCAGCACCGGG+TGG 0.705737 1_3:-2250419 Msa0096570:CDS
CTAGTGTGGTCAATGGAGAG+CGG 0.706985 1_3:-2250611 Msa0096570:CDS
TAGTAATGATAGTATCTCTG+TGG 0.714916 1_3:+2253653 None:intergenic
ACAGAAACTCATCAAACGTG+CGG 0.727187 1_3:+2248684 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAATTTTGATATTTTTTA+TGG + chr1_3:2248579-2248598 None:intergenic 10.0%
!!! ATTTTGATATTTTTTATGGT+TGG + chr1_3:2248575-2248594 None:intergenic 15.0%
!! AAAATTGTTACTACATTATA+TGG - chr1_3:2248590-2248609 Msa0096570:three_prime_UTR 15.0%
!! TACTATTAAATCATAATTCT+AGG + chr1_3:2248707-2248726 None:intergenic 15.0%
!!! TTTTTTTTTTCATTTTTTGC+TGG - chr1_3:2251213-2251232 Msa0096570:CDS 15.0%
!! TGTAAAAAAATAGATGATAA+AGG + chr1_3:2251498-2251517 None:intergenic 15.0%
!!! AAACAATTTTTGTATGAAAT+AGG + chr1_3:2252069-2252088 None:intergenic 15.0%
!!! TTTTGAACAATTTCTTATAT+TGG - chr1_3:2252434-2252453 Msa0096570:intron 15.0%
!! TCAAATAATTCAATCAAATC+AGG + chr1_3:2249534-2249553 None:intergenic 20.0%
!!! AAACTATCTTTGAAAACTTA+TGG + chr1_3:2249605-2249624 None:intergenic 20.0%
!! ACATTAGTGTTTATAATGAT+AGG - chr1_3:2249676-2249695 Msa0096570:intron 20.0%
!!! AATCTTCATTTTTTCATCTA+AGG + chr1_3:2249747-2249766 None:intergenic 20.0%
!! AATCATTAATTTATCACGTT+TGG - chr1_3:2249770-2249789 Msa0096570:intron 20.0%
!! ATCATTAATTTATCACGTTT+GGG - chr1_3:2249771-2249790 Msa0096570:intron 20.0%
!!! TATCGTAATTTTGATACATT+TGG + chr1_3:2249869-2249888 None:intergenic 20.0%
!! CAATAAACATATTTAACTCT+GGG + chr1_3:2250137-2250156 None:intergenic 20.0%
!!! TTTGCTGGTAAATTTTATTT+TGG - chr1_3:2251228-2251247 Msa0096570:intron 20.0%
!! ATATTAATTAACTACCTGAA+GGG + chr1_3:2252291-2252310 None:intergenic 20.0%
!! TATATTAATTAACTACCTGA+AGG + chr1_3:2252292-2252311 None:intergenic 20.0%
!! TGAACACTTATATTAGTATT+TGG - chr1_3:2252386-2252405 Msa0096570:intron 20.0%
!! TTTCCATATCAATAAGTTTA+CGG + chr1_3:2252505-2252524 None:intergenic 20.0%
!! TATTGATATGGAAAAACTTA+AGG - chr1_3:2252511-2252530 Msa0096570:intron 20.0%
!!! TATTGTTAGTATTTTGTTGA+GGG - chr1_3:2252920-2252939 Msa0096570:intron 20.0%
!! GGAGTATATAACATTAATTT+GGG + chr1_3:2253074-2253093 None:intergenic 20.0%
!! TGGAGTATATAACATTAATT+TGG + chr1_3:2253075-2253094 None:intergenic 20.0%
!!! TAAATTGATAATGATCTTGT+TGG - chr1_3:2253244-2253263 Msa0096570:intron 20.0%
!! TATCAAAATAAATGACATGT+AGG + chr1_3:2253454-2253473 None:intergenic 20.0%
!!! TTTAATATTTTTTGTAGCAC+TGG - chr1_3:2253638-2253657 Msa0096570:CDS 20.0%
!!! AAAAGTTTTGAAATTCTATG+TGG - chr1_3:2253909-2253928 Msa0096570:five_prime_UTR 20.0%
!! TCAAAGAGTTTTCAATCATA+CGG + chr1_3:2249146-2249165 None:intergenic 25.0%
!! AAAAAAGAGAGCATATATGT+AGG - chr1_3:2249507-2249526 Msa0096570:intron 25.0%
!! AAAAAGAGAGCATATATGTA+GGG - chr1_3:2249508-2249527 Msa0096570:intron 25.0%
! ATTAAGATGTATATCCAAAC+AGG - chr1_3:2249720-2249739 Msa0096570:intron 25.0%
! TTAAGATGTATATCCAAACA+GGG - chr1_3:2249721-2249740 Msa0096570:intron 25.0%
! TCATTAATTTATCACGTTTG+GGG - chr1_3:2249772-2249791 Msa0096570:intron 25.0%
!!! TCTTTGGTTAGTTTTGTTAT+CGG - chr1_3:2249940-2249959 Msa0096570:intron 25.0%
! GTGTCTTTCATTAATCAATT+TGG - chr1_3:2249965-2249984 Msa0096570:intron 25.0%
! GTCTTATGTTAGTAATTTCA+TGG + chr1_3:2249992-2250011 None:intergenic 25.0%
!!! TTTTGGTCTTTAAATGTGTA+AGG + chr1_3:2250069-2250088 None:intergenic 25.0%
! CCAATAAACATATTTAACTC+TGG + chr1_3:2250138-2250157 None:intergenic 25.0%
! CCAGAGTTAAATATGTTTAT+TGG - chr1_3:2250135-2250154 Msa0096570:intron 25.0%
!!! ATTGGAGTAAATTGTCATTT+TGG - chr1_3:2250153-2250172 Msa0096570:intron 25.0%
!!! AATCATTTTAGTCCCTAAAT+GGG + chr1_3:2250316-2250335 None:intergenic 25.0%
!!! TAATCATTTTAGTCCCTAAA+TGG + chr1_3:2250317-2250336 None:intergenic 25.0%
! ATATTTAAACCGTGTAACTT+GGG + chr1_3:2250409-2250428 None:intergenic 25.0%
! TTACACGGTTTAAATATCTT+GGG - chr1_3:2250412-2250431 Msa0096570:CDS 25.0%
!!! CTGGTAAATTTTATTTTGGT+TGG - chr1_3:2251232-2251251 Msa0096570:intron 25.0%
!!! AAATTTTATTTTGGTTGGAC+TGG - chr1_3:2251237-2251256 Msa0096570:intron 25.0%
! TATTATAATGAATCTCACCA+AGG - chr1_3:2251555-2251574 Msa0096570:intron 25.0%
! ATTATAATGAATCTCACCAA+GGG - chr1_3:2251556-2251575 Msa0096570:intron 25.0%
!! ATATGATACGTGTTTTCAAT+CGG + chr1_3:2251642-2251661 None:intergenic 25.0%
! CAAAAATTGTTTCAGTTTGT+TGG - chr1_3:2252077-2252096 Msa0096570:intron 25.0%
! ACACCATGTTACTATTATTA+TGG + chr1_3:2252135-2252154 None:intergenic 25.0%
! TAACCGTAAACTTATTGATA+TGG - chr1_3:2252499-2252518 Msa0096570:intron 25.0%
!! GTATTGTTAGTATTTTGTTG+AGG - chr1_3:2252919-2252938 Msa0096570:intron 25.0%
! TCATATAAACCATTAACTGT+TGG + chr1_3:2253118-2253137 None:intergenic 25.0%
! ATTTCACACATATTCAGAAA+AGG + chr1_3:2253181-2253200 None:intergenic 25.0%
! TATCAATTTATGTACTCCTT+TGG + chr1_3:2253234-2253253 None:intergenic 25.0%
!! TCTAATTTGTGTTATAGCAT+TGG - chr1_3:2253963-2253982 Msa0096570:five_prime_UTR 25.0%
TTTATGGTTGGACAACTTAT+AGG + chr1_3:2248563-2248582 None:intergenic 30.0%
! AAACAAGGCATAATTTTTGC+TGG + chr1_3:2248740-2248759 None:intergenic 30.0%
CGCTATACAACAAAAAAACA+AGG + chr1_3:2248755-2248774 None:intergenic 30.0%
TAGTAATGATAGTATCTCTG+TGG + chr1_3:2248876-2248895 None:intergenic 30.0%
AAGAAGAAGAAACTTCAGTT+GGG - chr1_3:2248997-2249016 Msa0096570:three_prime_UTR 30.0%
TGGTATATGGGAGAATATTT+GGG - chr1_3:2249047-2249066 Msa0096570:three_prime_UTR 30.0%
GGACATAGTCAAATTCAAAA+CGG + chr1_3:2249302-2249321 None:intergenic 30.0%
AACCTATGAGTTAAATTGTC+AGG - chr1_3:2249804-2249823 Msa0096570:CDS 30.0%
AACCTGACAATTTAACTCAT+AGG + chr1_3:2249809-2249828 None:intergenic 30.0%
ATGAGTTAAATTGTCAGGTT+TGG - chr1_3:2249809-2249828 Msa0096570:CDS 30.0%
ATCAAAGTAGTACAAACCAA+AGG - chr1_3:2250218-2250237 Msa0096570:intron 30.0%
TATTTAAACCGTGTAACTTG+GGG + chr1_3:2250408-2250427 None:intergenic 30.0%
GATATTTAAACCGTGTAACT+TGG + chr1_3:2250410-2250429 None:intergenic 30.0%
GTTACACGGTTTAAATATCT+TGG - chr1_3:2250411-2250430 Msa0096570:CDS 30.0%
TAAATCATCGTATTCAAGCT+GGG - chr1_3:2250472-2250491 Msa0096570:CDS 30.0%
AGCTGAAAGGAAAGTTATAT+CGG - chr1_3:2250550-2250569 Msa0096570:CDS 30.0%
!! TAGAAAAGTTGGTGGAAAAT+AGG - chr1_3:2250748-2250767 Msa0096570:intron 30.0%
TTGATCTACTCTTCTAACAA+CGG + chr1_3:2250814-2250833 None:intergenic 30.0%
TAGAAGAGTAGATCAAATAG+AGG - chr1_3:2250818-2250837 Msa0096570:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + chr1_3:2250873-2250892 None:intergenic 30.0%
CTTTCTAATGGTTTCTCTAA+TGG + chr1_3:2250883-2250902 None:intergenic 30.0%
CATTAGAGAAACCATTAGAA+AGG - chr1_3:2250881-2250900 Msa0096570:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG - chr1_3:2250890-2250909 Msa0096570:intron 30.0%
! TTGGATCCAAATATGGTTTT+TGG - chr1_3:2250921-2250940 Msa0096570:intron 30.0%
GTGATTGAATATAACCACAT+AGG - chr1_3:2251051-2251070 Msa0096570:intron 30.0%
ATACATGCATCAATAACAAC+AGG + chr1_3:2251276-2251295 None:intergenic 30.0%
ATACAAGTTCTTAATACCCT+TGG + chr1_3:2251575-2251594 None:intergenic 30.0%
GAATAGAATCTACTCATATG+TGG - chr1_3:2251596-2251615 Msa0096570:intron 30.0%
TTGCATTGCATAAACAGTAA+AGG + chr1_3:2251827-2251846 None:intergenic 30.0%
GAGATTGATTACAACTTTAC+TGG + chr1_3:2252036-2252055 None:intergenic 30.0%
GCACCATAATAATAGTAACA+TGG - chr1_3:2252129-2252148 Msa0096570:intron 30.0%
!! TAATAGTAACATGGTGTCAT+AGG - chr1_3:2252138-2252157 Msa0096570:intron 30.0%
!! AATAGTAACATGGTGTCATA+GGG - chr1_3:2252139-2252158 Msa0096570:intron 30.0%
! ATTCATTTTATCTTCCAGAG+TGG - chr1_3:2252225-2252244 Msa0096570:intron 30.0%
TGCAACTATCTCATTTGAAT+TGG + chr1_3:2252547-2252566 None:intergenic 30.0%
TGTTTGATTGCTATCTATCT+AGG - chr1_3:2252633-2252652 Msa0096570:intron 30.0%
! TTTTCCTAAACAACAAATGC+TGG - chr1_3:2252897-2252916 Msa0096570:intron 30.0%
!! AATACCAGCATTTGTTGTTT+AGG + chr1_3:2252904-2252923 None:intergenic 30.0%
TAATGCAACACGGATATATA+AGG + chr1_3:2253013-2253032 None:intergenic 30.0%
ATCAAACATGTAATGCAACA+CGG + chr1_3:2253023-2253042 None:intergenic 30.0%
CCATTATCATAAATGCATAC+TGG + chr1_3:2253095-2253114 None:intergenic 30.0%
CCAGTATGCATTTATGATAA+TGG - chr1_3:2253092-2253111 Msa0096570:intron 30.0%
!!! TCATTTTTGTTATTGTGTGC+AGG - chr1_3:2253292-2253311 Msa0096570:intron 30.0%
GCAGGTCTAAAAACTATAAA+AGG - chr1_3:2253310-2253329 Msa0096570:intron 30.0%
GACTGAATAAGTGATATTGA+AGG - chr1_3:2253537-2253556 Msa0096570:CDS 30.0%
GTTCTTGAACAAAACTCTAA+TGG - chr1_3:2253574-2253593 Msa0096570:CDS 30.0%
! ACATTGAAGATGCTGATTAT+CGG + chr1_3:2253603-2253622 None:intergenic 30.0%
AAGAACATGTTATTGCTCAA+TGG + chr1_3:2253679-2253698 None:intergenic 30.0%
ATTGAGCAATAACATGTTCT+TGG - chr1_3:2253678-2253697 Msa0096570:CDS 30.0%
TTAAGAACAAAGTGAGTGTT+TGG - chr1_3:2253738-2253757 Msa0096570:five_prime_UTR 30.0%
AACACGCTAAAAATTGAGTT+CGG - chr1_3:2253875-2253894 Msa0096570:five_prime_UTR 30.0%
! AAATTCTATGTGGCACTTTT+GGG - chr1_3:2253919-2253938 Msa0096570:five_prime_UTR 30.0%
AGATTCTTAACTATCTCTTG+TGG + chr1_3:2253946-2253965 None:intergenic 30.0%
TTTCTTCTTCTACTGCTGAA+TGG + chr1_3:2248910-2248929 None:intergenic 35.0%
TTCAGCAGTAGAAGAAGAAA+AGG - chr1_3:2248910-2248929 Msa0096570:three_prime_UTR 35.0%
TCAGCAGTAGAAGAAGAAAA+GGG - chr1_3:2248911-2248930 Msa0096570:three_prime_UTR 35.0%
GAAGAAGAAGAAACTTCAGT+TGG - chr1_3:2248996-2249015 Msa0096570:three_prime_UTR 35.0%
!! GAGTTTTATGATGAGTCTTC+TGG - chr1_3:2249027-2249046 Msa0096570:three_prime_UTR 35.0%
ATGATGAGTCTTCTGGTATA+TGG - chr1_3:2249034-2249053 Msa0096570:three_prime_UTR 35.0%
TGATGAGTCTTCTGGTATAT+GGG - chr1_3:2249035-2249054 Msa0096570:three_prime_UTR 35.0%
CTGGTATATGGGAGAATATT+TGG - chr1_3:2249046-2249065 Msa0096570:three_prime_UTR 35.0%
GGTATATGGGAGAATATTTG+GGG - chr1_3:2249048-2249067 Msa0096570:three_prime_UTR 35.0%
GAAACAGAAACAGTAGAATC+AGG + chr1_3:2249102-2249121 None:intergenic 35.0%
TGTCCAAATCAAGTTCACTA+CGG - chr1_3:2249317-2249336 Msa0096570:intron 35.0%
TTAATGAGTTCCACCAGTAA+TGG - chr1_3:2249354-2249373 Msa0096570:intron 35.0%
CTATCTGAACAATCCATTAC+TGG + chr1_3:2249370-2249389 None:intergenic 35.0%
TCGATTGGTGAAACAATTCT+TGG - chr1_3:2249398-2249417 Msa0096570:intron 35.0%
GTCTTGTATGTGTCTTTCTT+TGG - chr1_3:2249924-2249943 Msa0096570:intron 35.0%
!!! CTCTGCTTCATAGCTTTTTT+TGG + chr1_3:2250086-2250105 None:intergenic 35.0%
TATCATAACCCCAAGTTACA+CGG - chr1_3:2250397-2250416 Msa0096570:CDS 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG + chr1_3:2250439-2250458 None:intergenic 35.0%
GTAAATCATCGTATTCAAGC+TGG - chr1_3:2250471-2250490 Msa0096570:CDS 35.0%
! AAAGTACCACTTAAGCTGAA+AGG - chr1_3:2250537-2250556 Msa0096570:CDS 35.0%
AACTTTCCTTTCAGCTTAAG+TGG + chr1_3:2250546-2250565 None:intergenic 35.0%
AGACTAGATAGGATAGGATT+AGG - chr1_3:2250685-2250704 Msa0096570:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr1_3:2250737-2250756 Msa0096570:intron 35.0%
ACCTATAGTAGAAAAGTTGG+TGG - chr1_3:2250740-2250759 Msa0096570:intron 35.0%
! TCCACCAACTTTTCTACTAT+AGG + chr1_3:2250744-2250763 None:intergenic 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr1_3:2250762-2250781 Msa0096570:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG + chr1_3:2250895-2250914 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr1_3:2250914-2250933 Msa0096570:intron 35.0%
ATGACGCCAAAAACCATATT+TGG + chr1_3:2250930-2250949 None:intergenic 35.0%
CATCAGATTGAAGATGTAGT+TGG + chr1_3:2251093-2251112 None:intergenic 35.0%
ACATCTTCAATCTGATGTCT+TGG - chr1_3:2251096-2251115 Msa0096570:CDS 35.0%
!! CTTGGTGCTACATAGAAAAA+AGG - chr1_3:2251114-2251133 Msa0096570:CDS 35.0%
! CAAAGAGTGTAGTTGATGTT+GGG - chr1_3:2251320-2251339 Msa0096570:intron 35.0%
ATCAATGTCAGTATCGTGTT+TGG - chr1_3:2251751-2251770 Msa0096570:intron 35.0%
ATGCAATGCAATGCAATTGT+AGG - chr1_3:2251836-2251855 Msa0096570:intron 35.0%
!! ATTAGGACCTTTGGTTTGTT+AGG + chr1_3:2251951-2251970 None:intergenic 35.0%
GCAAAAGAAATTAGGACCTT+TGG + chr1_3:2251960-2251979 None:intergenic 35.0%
TGTTGTAGGGATTCTTCATT+CGG + chr1_3:2252173-2252192 None:intergenic 35.0%
ATGAAGAATCCCTACAACAA+TGG - chr1_3:2252174-2252193 Msa0096570:intron 35.0%
TGAAGAATCCCTACAACAAT+GGG - chr1_3:2252175-2252194 Msa0096570:intron 35.0%
TCACTATGTGCTATCAAGTT+AGG - chr1_3:2252599-2252618 Msa0096570:intron 35.0%
TGATACGTTCAGCATTAACA+TGG - chr1_3:2252707-2252726 Msa0096570:intron 35.0%
! AGACTAGTGATTTGAGACAA+GGG + chr1_3:2252798-2252817 None:intergenic 35.0%
! AAGACTAGTGATTTGAGACA+AGG + chr1_3:2252799-2252818 None:intergenic 35.0%
! TGTTAGTATTTTGTTGAGGG+TGG - chr1_3:2252923-2252942 Msa0096570:intron 35.0%
AGGAATGATAAGGAGATTGA+GGG + chr1_3:2252957-2252976 None:intergenic 35.0%
AGTTTAGGAGAGGAATGATA+AGG + chr1_3:2252967-2252986 None:intergenic 35.0%
!! TGATAATGGCCAACAGTTAA+TGG - chr1_3:2253106-2253125 Msa0096570:intron 35.0%
CTGAATCCTTCTATCATCAA+TGG + chr1_3:2253349-2253368 None:intergenic 35.0%
! CATTGATGATAGAAGGATTC+AGG - chr1_3:2253347-2253366 Msa0096570:intron 35.0%
ATGATAGAAGGATTCAGGAA+GGG - chr1_3:2253352-2253371 Msa0096570:intron 35.0%
! GAAATTCTATGTGGCACTTT+TGG - chr1_3:2253918-2253937 Msa0096570:five_prime_UTR 35.0%
GTTGGACAACTTATAGGTGT+AGG + chr1_3:2248557-2248576 None:intergenic 40.0%
TTTCATGTCTGACGTGTGTT+TGG + chr1_3:2248645-2248664 None:intergenic 40.0%
TCTAGGTACACACGAAACTA+CGG + chr1_3:2248690-2248709 None:intergenic 40.0%
TTGTGTGTTACCACTTGCAA+CGG + chr1_3:2248784-2248803 None:intergenic 40.0%
GGTAACACACAACACAACAA+TGG - chr1_3:2248792-2248811 Msa0096570:three_prime_UTR 40.0%
! ATAGTATCTCTGTGGTGTTG+AGG + chr1_3:2248868-2248887 None:intergenic 40.0%
! ACTTTTGCTTCTCTTTCGAC+TGG - chr1_3:2249165-2249184 Msa0096570:CDS 40.0%
CAACCGTAGTGAACTTGATT+TGG + chr1_3:2249323-2249342 None:intergenic 40.0%
CAAATCAAGTTCACTACGGT+TGG - chr1_3:2249321-2249340 Msa0096570:intron 40.0%
TCTGAACAATCCATTACTGG+TGG + chr1_3:2249367-2249386 None:intergenic 40.0%
CAGATAGACTTGAGTTCGAT+TGG - chr1_3:2249383-2249402 Msa0096570:intron 40.0%
GCTAGACAGTAAGAAAAGTC+TGG + chr1_3:2249424-2249443 None:intergenic 40.0%
TTAGCAGAACCCATTATCGA+AGG - chr1_3:2249455-2249474 Msa0096570:intron 40.0%
TAGCAGAACCCATTATCGAA+GGG - chr1_3:2249456-2249475 Msa0096570:intron 40.0%
TGCGTTAACCCTTCGATAAT+GGG + chr1_3:2249467-2249486 None:intergenic 40.0%
TTGCGTTAACCCTTCGATAA+TGG + chr1_3:2249468-2249487 None:intergenic 40.0%
!! TTTTCATCTAAGGCCCTGTT+TGG + chr1_3:2249737-2249756 None:intergenic 40.0%
AGTCGCTGTCATTATAGTCT+CGG - chr1_3:2250190-2250209 Msa0096570:intron 40.0%
TGACATTTCCTCACCCATTT+AGG - chr1_3:2250300-2250319 Msa0096570:CDS 40.0%
GACATTTCCTCACCCATTTA+GGG - chr1_3:2250301-2250320 Msa0096570:CDS 40.0%
! TTTTAGTCCCTAAATGGGTG+AGG + chr1_3:2250311-2250330 None:intergenic 40.0%
AAAGCTATGAAGCAGAGACA+TGG - chr1_3:2250340-2250359 Msa0096570:CDS 40.0%
GGGTCCATAGTACAAAATGA+CGG - chr1_3:2250432-2250451 Msa0096570:CDS 40.0%
ATCGGCAATGTTGTATGGTA+CGG - chr1_3:2250584-2250603 Msa0096570:CDS 40.0%
GATGAGTGGTAAGACTAGAT+AGG - chr1_3:2250674-2250693 Msa0096570:intron 40.0%
GTGGTAAGACTAGATAGGAT+AGG - chr1_3:2250679-2250698 Msa0096570:intron 40.0%
TGACACCATTAGAGAAAGAG+TGG - chr1_3:2250710-2250729 Msa0096570:intron 40.0%
GACACCATTAGAGAAAGAGT+GGG - chr1_3:2250711-2250730 Msa0096570:intron 40.0%
ACACCATTAGAGAAAGAGTG+GGG - chr1_3:2250712-2250731 Msa0096570:intron 40.0%
TGGTGGAAAATAGGCTTAGA+TGG - chr1_3:2250757-2250776 Msa0096570:intron 40.0%
AGATCAAATAGAGGAGAGTC+AGG - chr1_3:2250827-2250846 Msa0096570:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_3:2250843-2250862 Msa0096570:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG - chr1_3:2250902-2250921 Msa0096570:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG + chr1_3:2250971-2250990 None:intergenic 40.0%
TTACACGACATCAACCTATG+TGG + chr1_3:2251068-2251087 None:intergenic 40.0%
GCTCAGATGATCCATCAAAA+TGG - chr1_3:2251296-2251315 Msa0096570:intron 40.0%
!! ACACTCTTTGGCCATTTTGA+TGG + chr1_3:2251310-2251329 None:intergenic 40.0%
CCAACATCAACTACACTCTT+TGG + chr1_3:2251322-2251341 None:intergenic 40.0%
! CCAAAGAGTGTAGTTGATGT+TGG - chr1_3:2251319-2251338 Msa0096570:intron 40.0%
ACAACTTGCCCCAAATTTCT+TGG + chr1_3:2251377-2251396 None:intergenic 40.0%
! AAATTTGGGGCAAGTTGTGT+AGG - chr1_3:2251379-2251398 Msa0096570:intron 40.0%
TAGCTCTTTCAGCTTGAACA+GGG + chr1_3:2251417-2251436 None:intergenic 40.0%
! TTAGCTCTTTCAGCTTGAAC+AGG + chr1_3:2251418-2251437 None:intergenic 40.0%
!! TGCTCAAGGATTAGCTGATA+AGG - chr1_3:2251450-2251469 Msa0096570:intron 40.0%
TTGACCACACTAGATCAAAC+TGG + chr1_3:2251908-2251927 None:intergenic 40.0%
GTTTGATCTAGTGTGGTCAA+TGG - chr1_3:2251908-2251927 Msa0096570:intron 40.0%
GCATATGCCTAACAAACCAA+AGG - chr1_3:2251941-2251960 Msa0096570:intron 40.0%
GTGAGACGGCAAAAGAAATT+AGG + chr1_3:2251968-2251987 None:intergenic 40.0%
!! AGTTTGTTGGTGAGTTAGCA+CGG - chr1_3:2252090-2252109 Msa0096570:intron 40.0%
!! ACTATTATTATGGTGCCACC+CGG + chr1_3:2252125-2252144 None:intergenic 40.0%
TTGTAGGGATTCTTCATTCG+GGG + chr1_3:2252171-2252190 None:intergenic 40.0%
GTTGTAGGGATTCTTCATTC+GGG + chr1_3:2252172-2252191 None:intergenic 40.0%
ATCCTTCTCCCATTGTTGTA+GGG + chr1_3:2252186-2252205 None:intergenic 40.0%
ATTAACTACCTGAAGGGACA+TGG + chr1_3:2252285-2252304 None:intergenic 40.0%
AGGACATCAAATCAGCAGAT+TGG - chr1_3:2252653-2252672 Msa0096570:intron 40.0%
ACGTTCAGCATTAACATGGA+AGG - chr1_3:2252711-2252730 Msa0096570:intron 40.0%
CGTTCAGCATTAACATGGAA+GGG - chr1_3:2252712-2252731 Msa0096570:intron 40.0%
ACGTGACACTCAATATAGGA+CGG + chr1_3:2252834-2252853 None:intergenic 40.0%
GCTAACGTGACACTCAATAT+AGG + chr1_3:2252838-2252857 None:intergenic 40.0%
TTGAGTGTCACGTTAGCAAA+AGG - chr1_3:2252841-2252860 Msa0096570:intron 40.0%
GAGGAATGATAAGGAGATTG+AGG + chr1_3:2252958-2252977 None:intergenic 40.0%
!! ATAAGGTTGGCTTGGTAGTT+GGG + chr1_3:2252996-2253015 None:intergenic 40.0%
!! TATAAGGTTGGCTTGGTAGT+TGG + chr1_3:2252997-2253016 None:intergenic 40.0%
! ACGGATATATAAGGTTGGCT+TGG + chr1_3:2253004-2253023 None:intergenic 40.0%
GCAACACGGATATATAAGGT+TGG + chr1_3:2253009-2253028 None:intergenic 40.0%
! GCTATGCCATTGATGATAGA+AGG - chr1_3:2253340-2253359 Msa0096570:intron 40.0%
GATGATAGAAGGATTCAGGA+AGG - chr1_3:2253351-2253370 Msa0096570:intron 40.0%
AGGCTTTCGACATGTGATAA+TGG + chr1_3:2253392-2253411 None:intergenic 40.0%
ATCACTTATTCAGTCCCAGT+AGG + chr1_3:2253532-2253551 None:intergenic 40.0%
TAACATGTTCTTGGCCATTG+TGG - chr1_3:2253687-2253706 Msa0096570:CDS 40.0%
! CTTTCACAGTAGAAAGCATG+TGG + chr1_3:2253790-2253809 None:intergenic 40.0%
ACAGAAACTCATCAAACGTG+CGG + chr1_3:2253845-2253864 None:intergenic 40.0%
TAGGTGTAGGACGCTATGAT+CGG + chr1_3:2248544-2248563 None:intergenic 45.0%
TGTCTGACGTGTGTTTGGTT+TGG + chr1_3:2248640-2248659 None:intergenic 45.0%
AGGGTCATTGCGTCTATCAA+TGG - chr1_3:2248930-2248949 Msa0096570:three_prime_UTR 45.0%
GTCATTGCGTCTATCAATGG+CGG - chr1_3:2248933-2248952 Msa0096570:three_prime_UTR 45.0%
! GAAAGAAGCGATGGTGGTAA+TGG - chr1_3:2248960-2248979 Msa0096570:three_prime_UTR 45.0%
TGGGGTGATCATATGCATCA+TGG - chr1_3:2249066-2249085 Msa0096570:three_prime_UTR 45.0%
GGTTCTGCTAATCCAGAGTT+CGG + chr1_3:2249446-2249465 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG - chr1_3:2250475-2250494 Msa0096570:CDS 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - chr1_3:2250484-2250503 Msa0096570:CDS 45.0%
TTGAAATGGAGAAGAGCCTC+AGG - chr1_3:2250498-2250517 Msa0096570:CDS 45.0%
CTTATCGCACAAAACACCTG+AGG + chr1_3:2250517-2250536 None:intergenic 45.0%
ATATCGGACAGCAGTCAGAT+CGG - chr1_3:2250566-2250585 Msa0096570:CDS 45.0%
GTCAGATCGGCAATGTTGTA+TGG - chr1_3:2250579-2250598 Msa0096570:CDS 45.0%
CACTTACTTTCCTCTCGTGT+TGG + chr1_3:2250629-2250648 None:intergenic 45.0%
CGAGAGGAAAGTAAGTGTAG+CGG - chr1_3:2250632-2250651 Msa0096570:CDS 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG - chr1_3:2250640-2250659 Msa0096570:CDS 45.0%
CACCATTAGAGAAAGAGTGG+GGG - chr1_3:2250713-2250732 Msa0096570:intron 45.0%
TACCCCCACTCTTTCTCTAA+TGG + chr1_3:2250718-2250737 None:intergenic 45.0%
CTTCTAACAACGGCATCTAC+AGG + chr1_3:2250804-2250823 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr1_3:2250837-2250856 Msa0096570:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_3:2250970-2250989 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG + chr1_3:2250972-2250991 None:intergenic 45.0%
! AGTGTAGTTGATGTTGGGTG+TGG - chr1_3:2251325-2251344 Msa0096570:intron 45.0%
TTGATGTTGGGTGTGGCATA+GGG - chr1_3:2251332-2251351 Msa0096570:intron 45.0%
AGGTACCTGGCCAAGAAATT+TGG - chr1_3:2251364-2251383 Msa0096570:intron 45.0%
GGTACCTGGCCAAGAAATTT+GGG - chr1_3:2251365-2251384 Msa0096570:intron 45.0%
GTACCTGGCCAAGAAATTTG+GGG - chr1_3:2251366-2251385 Msa0096570:intron 45.0%
AGCTGAAAGAGCTAATGCTC+TGG - chr1_3:2251423-2251442 Msa0096570:intron 45.0%
! TAGAGCGTCAGCAACTTGAA+AGG + chr1_3:2251865-2251884 None:intergenic 45.0%
CTAGAACAACCATTCCCTGA+CGG - chr1_3:2251882-2251901 Msa0096570:intron 45.0%
AGTGCAGTATGCAAGTGAGA+CGG + chr1_3:2251982-2252001 None:intergenic 45.0%
! GTTTGTTGGTGAGTTAGCAC+GGG - chr1_3:2252091-2252110 Msa0096570:intron 45.0%
ATCCCTACAACAATGGGAGA+AGG - chr1_3:2252181-2252200 Msa0096570:intron 45.0%
GATCCTTCTCCCATTGTTGT+AGG + chr1_3:2252187-2252206 None:intergenic 45.0%
ACTTGAAACCATGTCCCTTC+AGG - chr1_3:2252274-2252293 Msa0096570:intron 45.0%
! CTCCCTTTGTTGCTCCATTT+TGG - chr1_3:2252677-2252696 Msa0096570:intron 45.0%
GGCCAAAATGGAGCAACAAA+GGG + chr1_3:2252682-2252701 None:intergenic 45.0%
TGGCCAAAATGGAGCAACAA+AGG + chr1_3:2252683-2252702 None:intergenic 45.0%
AATGCTGAACGTATCACTGC+TGG + chr1_3:2252703-2252722 None:intergenic 45.0%
TTCACCTCAATCTTGCGAAG+TGG - chr1_3:2252736-2252755 Msa0096570:intron 45.0%
CTTACCACTTCGCAAGATTG+AGG + chr1_3:2252743-2252762 None:intergenic 45.0%
TCGAAAGCCTGAAAATGCAG+AGG - chr1_3:2253402-2253421 Msa0096570:CDS 45.0%
CGAAAGCCTGAAAATGCAGA+GGG - chr1_3:2253403-2253422 Msa0096570:CDS 45.0%
! CATTGACCCTCTGCATTTTC+AGG + chr1_3:2253412-2253431 None:intergenic 45.0%
! TGTAGCACTGGAGTATGATG+TGG - chr1_3:2253650-2253669 Msa0096570:CDS 45.0%
ATGTTCTTGGCCATTGTGGA+TGG - chr1_3:2253691-2253710 Msa0096570:CDS 45.0%
!!! TCATTATTTAAAATTATTAT+TGG - chr1_3:2251719-2251738 Msa0096570:intron 5.0%
ATTGCGTCTATCAATGGCGG+CGG - chr1_3:2248936-2248955 Msa0096570:three_prime_UTR 50.0%
TCACTACGGTTGGACTCAAG+TGG - chr1_3:2249331-2249350 Msa0096570:intron 50.0%
CTTACTGTCTAGCCGAACTC+TGG - chr1_3:2249431-2249450 Msa0096570:intron 50.0%
TGAGTCTTCGAGTGTGCCTT+TGG + chr1_3:2250237-2250256 None:intergenic 50.0%
TCCAACTTTCACCTCGTCGT+GGG + chr1_3:2250372-2250391 None:intergenic 50.0%
TGTTGTATGGTACGGAGTGC+TGG - chr1_3:2250592-2250611 Msa0096570:CDS 50.0%
! GTTGTATGGTACGGAGTGCT+GGG - chr1_3:2250593-2250612 Msa0096570:CDS 50.0%
AGGATGTTGTGCTGGATGAG+TGG - chr1_3:2250660-2250679 Msa0096570:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_3:2250966-2250985 None:intergenic 50.0%
GTTGATGTTGGGTGTGGCAT+AGG - chr1_3:2251331-2251350 Msa0096570:intron 50.0%
TGATGTTGGGTGTGGCATAG+GGG - chr1_3:2251333-2251352 Msa0096570:intron 50.0%
TTGCCCCAAATTTCTTGGCC+AGG + chr1_3:2251372-2251391 None:intergenic 50.0%
AATGCTCTGGCTGTTGCTCA+AGG - chr1_3:2251436-2251455 Msa0096570:intron 50.0%
GTCTGACTGCAACGTGATAC+TGG - chr1_3:2251671-2251690 Msa0096570:intron 50.0%
TATGTCAGTGCTTCATCGCG+TGG - chr1_3:2251786-2251805 Msa0096570:intron 50.0%
CTAGATCAAACTGGCCGTCA+GGG + chr1_3:2251899-2251918 None:intergenic 50.0%
ACTAGATCAAACTGGCCGTC+AGG + chr1_3:2251900-2251919 None:intergenic 50.0%
ACGGCCAGTTTGATCTAGTG+TGG - chr1_3:2251901-2251920 Msa0096570:intron 50.0%
CTAGTGTGGTCAATGGAGAG+CGG - chr1_3:2251915-2251934 Msa0096570:intron 50.0%
CGTATCACTGCTGGCCAAAA+TGG + chr1_3:2252694-2252713 None:intergenic 50.0%
GACGCTCGATATGTGACCAA+AGG - chr1_3:2253215-2253234 Msa0096570:intron 50.0%
TCTGCCATGTCAGATCCTAC+TGG - chr1_3:2253514-2253533 Msa0096570:CDS 50.0%
CTGCCATGTCAGATCCTACT+GGG - chr1_3:2253515-2253534 Msa0096570:CDS 50.0%
AGTCCCAGTAGGATCTGACA+TGG + chr1_3:2253521-2253540 None:intergenic 50.0%
! AGCACTGGAGTATGATGTGG+CGG - chr1_3:2253653-2253672 Msa0096570:CDS 50.0%
!! TGGCCATTGTGGATGGATTG+TGG - chr1_3:2253698-2253717 Msa0096570:CDS 50.0%
!! GGCCATTGTGGATGGATTGT+GGG - chr1_3:2253699-2253718 Msa0096570:CDS 50.0%
!! GCCATTGTGGATGGATTGTG+GGG - chr1_3:2253700-2253719 Msa0096570:CDS 50.0%
ACCCCACAATCCATCCACAA+TGG + chr1_3:2253704-2253723 None:intergenic 50.0%
TTCCACATCCATTCACCGAC+CGG - chr1_3:2253761-2253780 Msa0096570:five_prime_UTR 50.0%
! AGTAGAAAGCATGTGGACGC+CGG + chr1_3:2253783-2253802 None:intergenic 50.0%
CATGGACATTTCCCACGACG+AGG - chr1_3:2250358-2250377 Msa0096570:CDS 55.0%
TCCCACGACGAGGTGAAAGT+TGG - chr1_3:2250368-2250387 Msa0096570:CDS 55.0%
CTCCAACTTTCACCTCGTCG+TGG + chr1_3:2250373-2250392 None:intergenic 55.0%
CGGTTAAGAGCCAACACGAG+AGG - chr1_3:2250616-2250635 Msa0096570:CDS 55.0%
CGGAGATGAGGATGTTGTGC+TGG - chr1_3:2250652-2250671 Msa0096570:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_3:2250958-2250977 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_3:2250957-2250976 Msa0096570:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_3:2250958-2250977 Msa0096570:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_3:2250964-2250983 Msa0096570:intron 55.0%
GATGTTGGGTGTGGCATAGG+GGG - chr1_3:2251334-2251353 Msa0096570:intron 55.0%
GTGGCATAGGGGGAAGTTCA+AGG - chr1_3:2251344-2251363 Msa0096570:intron 55.0%
! AGGGGGAAGTTCAAGGTACC+TGG - chr1_3:2251351-2251370 Msa0096570:intron 55.0%
!! CGGAAGTGTCAGTGCTGCAT+AGG + chr1_3:2251622-2251641 None:intergenic 55.0%
TCAAACTGGCCGTCAGGGAA+TGG + chr1_3:2251894-2251913 None:intergenic 55.0%
TCAGCAGTTGAGCACCACTC+TGG + chr1_3:2252242-2252261 None:intergenic 55.0%
GTAGTTGGGTGGGGGAGTTT+AGG + chr1_3:2252982-2253001 None:intergenic 55.0%
!! TTGGCTTGGTAGTTGGGTGG+GGG + chr1_3:2252990-2253009 None:intergenic 55.0%
!! GTTGGCTTGGTAGTTGGGTG+GGG + chr1_3:2252991-2253010 None:intergenic 55.0%
!! GGTTGGCTTGGTAGTTGGGT+GGG + chr1_3:2252992-2253011 None:intergenic 55.0%
!! AGGTTGGCTTGGTAGTTGGG+TGG + chr1_3:2252993-2253012 None:intergenic 55.0%
AGCGCGTGTACCGTTGCAAG+TGG - chr1_3:2248771-2248790 Msa0096570:three_prime_UTR 60.0%
GGCGGTGAAAGAAGCGATGG+TGG - chr1_3:2248954-2248973 Msa0096570:three_prime_UTR 60.0%
!! GTATGGTACGGAGTGCTGGG+CGG - chr1_3:2250596-2250615 Msa0096570:CDS 60.0%
GTTAGCACGGGTAGCAGCAC+CGG - chr1_3:2252103-2252122 Msa0096570:intron 60.0%
TTAGCACGGGTAGCAGCACC+GGG - chr1_3:2252104-2252123 Msa0096570:intron 60.0%
TGGGTGGGGGAGTTTAGGAG+AGG + chr1_3:2252977-2252996 None:intergenic 60.0%
! GAAAGCATGTGGACGCCGGT+CGG + chr1_3:2253779-2253798 None:intergenic 60.0%
GGCGGCGGTGAAAGAAGCGA+TGG - chr1_3:2248951-2248970 Msa0096570:three_prime_UTR 65.0%
CGCCGGTCGGTGAATGGATG+TGG + chr1_3:2253766-2253785 None:intergenic 65.0%
TGTGGACGCCGGTCGGTGAA+TGG + chr1_3:2253772-2253791 None:intergenic 65.0%
! GCACGGGTAGCAGCACCGGG+TGG - chr1_3:2252107-2252126 Msa0096570:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2248541 2254007 2248541 ID=Msa0096570;Name=Msa0096570
chr1_3 mRNA 2248541 2254007 2248541 ID=Msa0096570-mRNA-1;Parent=Msa0096570;Name=Msa0096570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=270|1|0.8|1|1|1|5|575|401
chr1_3 exon 2248541 2249234 2248541 ID=Msa0096570-mRNA-1:exon:528;Parent=Msa0096570-mRNA-1
chr1_3 exon 2249791 2249893 2249791 ID=Msa0096570-mRNA-1:exon:527;Parent=Msa0096570-mRNA-1
chr1_3 exon 2250253 2250690 2250253 ID=Msa0096570-mRNA-1:exon:526;Parent=Msa0096570-mRNA-1
chr1_3 exon 2251077 2251246 2251077 ID=Msa0096570-mRNA-1:exon:525;Parent=Msa0096570-mRNA-1
chr1_3 exon 2253362 2254007 2253362 ID=Msa0096570-mRNA-1:exon:524;Parent=Msa0096570-mRNA-1
chr1_3 five_prime_UTR 2253738 2254007 2253738 ID=Msa0096570-mRNA-1:five_prime_utr;Parent=Msa0096570-mRNA-1
chr1_3 CDS 2253362 2253737 2253362 ID=Msa0096570-mRNA-1:cds;Parent=Msa0096570-mRNA-1
chr1_3 CDS 2251077 2251246 2251077 ID=Msa0096570-mRNA-1:cds;Parent=Msa0096570-mRNA-1
chr1_3 CDS 2250253 2250690 2250253 ID=Msa0096570-mRNA-1:cds;Parent=Msa0096570-mRNA-1
chr1_3 CDS 2249791 2249893 2249791 ID=Msa0096570-mRNA-1:cds;Parent=Msa0096570-mRNA-1
chr1_3 CDS 2249116 2249234 2249116 ID=Msa0096570-mRNA-1:cds;Parent=Msa0096570-mRNA-1
chr1_3 three_prime_UTR 2248541 2249115 2248541 ID=Msa0096570-mRNA-1:three_prime_utr;Parent=Msa0096570-mRNA-1
Gene Sequence

>Msa0096570

ATGGTGACGACAGCGAGAATCTCTTCTTCATTATTACACTGCACACACACATTTCCTCAACACCACAGAGATACTATCATTACTACTACTACTGTACCATTCAGCAGTAGAAGAAGAAAAGGGTCATTGCGTCTATCAATGGCGGCGGTGAAAGAAGCGATGGTGGTAATGGAAGAAGAAGAGAAGAAGAAGAAGAAACTTCAGTTGGGTATTGCTGAGTTTTATGATGAGTCTTCTGGTATATGGGAGAATATTTGGGGTGATCATATGCATCATGGTTTTTATGATCCTGATTCTACTGTTTCTGTTTCTGATCATCGTGCTGCTCAGATCCGTATGATTGAAAACTCTTTGACTTTTGCTTCTCTTTCGACTGATGATCCATCAAAATGGCCAAAGAGTGTAGTTGATGTTGGGTGTGGCATAGGGGGAAGTTCAAGGTACCTGGCCAAGAAATTTGGGGCAAGTTGTGTAGGCATCACTCTCAGCCCTGTTCAAGCTGAAAGAGCTAATGCTCTGGCTGTTGCTCAAGGATTAGCTGATAAGGTGTCCTTTCAAGTTGCTGACGCTCTAGAACAACCATTCCCTGACGGCCAGTTTGATCTAGTGTGGTCAATGGAGAGCGGAGAGCATATGCCTAACAAACCAAAGGTCCTAATTTCTTTTGCCGTCTCACTTGCATACTGCACTTCACTTTCTTTGATATTTTCTGTTCTTTATGCCAGTAAAGTTGTAATCAATCTCATTTCAGTTTCCTATTTCATACAAAAATTGTTTCAGTTTGTTGGTGAGTTAGCACGGGTAGCAGCACCGGGTGGCACCATAATAATAGTAACATGGTGTCATAGGGATCTTGCCCCGAATGAAGAATCCCTACAACAATGGGAGAAGGATCTCTTGAAGAAGATATGTGATTCATTTTATCTTCCAGAGTGGTGCTCAACTGCTGATTATGTCAAATTACTTGAAACCATGTCCCTTCAGGACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGTTCAGCATTAACATGGAAGGGTTTCACCTCAATCTTGCGAAGTGGTCTAAAAACTATAAAAGGAGCTTTAGCTATGCCATTGATGATAGAAGGATTCAGGAAGGGTGTGATTAAGTTTGCCATTATCACATGTCGAAAGCCTGAAAATGCAGAGGGTCAATGA
Protein sequence

>Msa0096570

MVTTARISSSLLHCTHTFPQHHRDTIITTTTVPFSSRRRKGSLRLSMAAVKEAMVVMEEEEKKKKKLQLGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIENSLTFASLSTDDPSKWPKSVVDVGCGIGGSSRYLAKKFGASCVGITLSPVQAERANALAVAQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPNKPKVLISFAVSLAYCTSLSLIFSVLYASKVVINLISVSYFIQKLFQFVGELARVAAPGGTIIIVTWCHRDLAPNEESLQQWEKDLLKKICDSFYLPEWCSTADYVKLLETMSLQDIKSADWSPFVAPFWPAVIRSALTWKGFTSILRSGLKTIKGALAMPLMIEGFRKGVIKFAIITCRKPENAEGQ*