AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1431180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431180 MtrunA17_Chr1g0150551 83.791 401 18 4 1 401 2 355 0.0 608
Msa1431180 MtrunA17_Chr4g0018381 60.268 224 43 4 70 292 16 194 7.01e-89 267
Msa1431180 MtrunA17_Chr3g0089671 26.923 156 103 2 59 214 33 177 3.83e-12 67.0
Msa1431180 MtrunA17_Chr3g0143441 30.345 145 90 4 74 218 77 210 3.03e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431180 AT1G64970.1 64.350 331 73 2 67 395 60 347 3.22e-151 432
Msa1431180 AT3G18000.1 41.111 90 51 1 133 222 284 371 4.23e-13 71.2
Msa1431180 AT1G73600.1 40.000 90 52 1 133 222 283 370 1.40e-12 69.7
Msa1431180 AT1G73600.2 40.000 90 52 1 133 222 297 384 1.41e-12 69.7
Msa1431180 AT1G48600.1 40.000 90 52 1 133 222 268 355 2.20e-12 68.9
Msa1431180 AT1G48600.2 40.000 90 52 1 133 222 284 371 2.23e-12 68.9
Msa1431180 AT5G13710.1 25.806 155 104 2 60 214 34 177 4.08e-11 64.3
Msa1431180 AT5G13710.2 25.806 155 104 2 60 214 34 177 4.08e-11 64.3

Find 137 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTTTGTTGCTCCATTT+TGG 0.111682 tig0026810:+28210 Msa1431180:CDS
GAAATTCTATGTGGCACTTT+TGG 0.142526 tig0026810:+29451 Msa1431180:three_prime_UTR
CTGGTATATGGGAGAATATT+TGG 0.153591 tig0026810:+24579 Msa1431180:CDS
AAATGCTTTCACAATTTATT+TGG 0.191484 tig0026810:+29519 Msa1431180:three_prime_UTR
AGGTACCTGGCCAAGAAATT+TGG 0.197026 tig0026810:+26897 Msa1431180:CDS
ACAACTTGCCCCAAATTTCT+TGG 0.230657 tig0026810:-26907 None:intergenic
ACACCATGTTACTATTATTA+TGG 0.233170 tig0026810:-27665 None:intergenic
ATGATGAGTCTTCTGGTATA+TGG 0.237023 tig0026810:+24567 Msa1431180:CDS
TACTATTAAATCATAATTCT+AGG 0.238975 tig0026810:-24237 None:intergenic
TTTATGGTTGGACAACTTAT+AGG 0.249243 tig0026810:-24093 None:intergenic
GAGATTGATTACAACTTTAC+TGG 0.277224 tig0026810:-27566 None:intergenic
TGGTATATGGGAGAATATTT+GGG 0.285510 tig0026810:+24580 Msa1431180:CDS
CGTATCACTGCTGGCCAAAA+TGG 0.295543 tig0026810:-28224 None:intergenic
AAAATTGTTACTACATTATA+TGG 0.301860 tig0026810:+24123 Msa1431180:five_prime_UTR
GGTACCTGGCCAAGAAATTT+GGG 0.302133 tig0026810:+26898 Msa1431180:CDS
TAATAGTAACATGGTGTCAT+AGG 0.305812 tig0026810:+27671 Msa1431180:CDS
GCTATGCCATTGATGATAGA+AGG 0.319042 tig0026810:+28873 Msa1431180:CDS
GTTGATGTTGGGTGTGGCAT+AGG 0.327476 tig0026810:+26864 Msa1431180:CDS
ATTGAGCAATAACATGTTCT+TGG 0.335515 tig0026810:+29211 Msa1431180:three_prime_UTR
TTGATGTTGGGTGTGGCATA+GGG 0.339110 tig0026810:+26865 Msa1431180:CDS
TGTTGTAGGGATTCTTCATT+CGG 0.342059 tig0026810:-27703 None:intergenic
GTGAGACGGCAAAAGAAATT+AGG 0.344649 tig0026810:-27498 None:intergenic
AGGCTTTCGACATGTGATAA+TGG 0.352068 tig0026810:-28922 None:intergenic
CATTGATGATAGAAGGATTC+AGG 0.353317 tig0026810:+28880 Msa1431180:CDS
TTAAGAACAAAGTGAGTGTT+TGG 0.356229 tig0026810:+29271 Msa1431180:three_prime_UTR
GGCCATTGTGGATGGATTGT+GGG 0.358426 tig0026810:+29232 Msa1431180:three_prime_UTR
ACTTGAAACCATGTCCCTTC+AGG 0.364722 tig0026810:+27807 Msa1431180:CDS
TTCAGCAGTAGAAGAAGAAA+AGG 0.367968 tig0026810:+24443 Msa1431180:CDS
TTAGCTCTTTCAGCTTGAAC+AGG 0.369380 tig0026810:-26948 None:intergenic
GCAAAAGAAATTAGGACCTT+TGG 0.371178 tig0026810:-27490 None:intergenic
ATTAGGACCTTTGGTTTGTT+AGG 0.377795 tig0026810:-27481 None:intergenic
GTTGTAGGGATTCTTCATTC+GGG 0.388840 tig0026810:-27702 None:intergenic
GATCCTTCTCCCATTGTTGT+AGG 0.391437 tig0026810:-27717 None:intergenic
TCTAATTTGTGTTATAGCAT+TGG 0.403101 tig0026810:+29496 Msa1431180:three_prime_UTR
CCAACATCAACTACACTCTT+TGG 0.405985 tig0026810:-26852 None:intergenic
GTTCTTGAACAAAACTCTAA+TGG 0.407112 tig0026810:+29107 Msa1431180:three_prime_UTR
TTTCTTCTTCTACTGCTGAA+TGG 0.407358 tig0026810:-24440 None:intergenic
ACTAGATCAAACTGGCCGTC+AGG 0.424197 tig0026810:-27430 None:intergenic
TTTCATGTCTGACGTGTGTT+TGG 0.429326 tig0026810:-24175 None:intergenic
GTTAGCACGGGTAGCAGCAC+CGG 0.429524 tig0026810:+27636 Msa1431180:CDS
ACATTGAAGATGCTGATTAT+CGG 0.429863 tig0026810:-29133 None:intergenic
TGGCCATTGTGGATGGATTG+TGG 0.429897 tig0026810:+29231 Msa1431180:three_prime_UTR
GAAACAGAAACAGTAGAATC+AGG 0.439311 tig0026810:-24632 None:intergenic
TGATGAGTCTTCTGGTATAT+GGG 0.439939 tig0026810:+24568 Msa1431180:CDS
GCTCAGATGATCCATCAAAA+TGG 0.445713 tig0026810:+26829 Msa1431180:intron
TCTGCCATGTCAGATCCTAC+TGG 0.450790 tig0026810:+29047 Msa1431180:three_prime_UTR
TGAAGAATCCCTACAACAAT+GGG 0.467250 tig0026810:+27708 Msa1431180:CDS
TGCTCAAGGATTAGCTGATA+AGG 0.480374 tig0026810:+26983 Msa1431180:CDS
TGTCTGACGTGTGTTTGGTT+TGG 0.482358 tig0026810:-24170 None:intergenic
GAAGAAGAAGAAACTTCAGT+TGG 0.484989 tig0026810:+24529 Msa1431180:CDS
ATCCTTCTCCCATTGTTGTA+GGG 0.488458 tig0026810:-27716 None:intergenic
CTGAATCCTTCTATCATCAA+TGG 0.489050 tig0026810:-28879 None:intergenic
CTTACCACTTCGCAAGATTG+AGG 0.489090 tig0026810:-28273 None:intergenic
CTGCCATGTCAGATCCTACT+GGG 0.490736 tig0026810:+29048 Msa1431180:three_prime_UTR
GAAAGAAGCGATGGTGGTAA+TGG 0.494033 tig0026810:+24493 Msa1431180:CDS
TGTGGACGCCGGTCGGTGAA+TGG 0.498180 tig0026810:-29302 None:intergenic
AGTTTGTTGGTGAGTTAGCA+CGG 0.502667 tig0026810:+27623 Msa1431180:CDS
CGCCGGTCGGTGAATGGATG+TGG 0.505409 tig0026810:-29296 None:intergenic
TTGCCCCAAATTTCTTGGCC+AGG 0.505728 tig0026810:-26902 None:intergenic
TGGGGTGATCATATGCATCA+TGG 0.511664 tig0026810:+24599 Msa1431180:CDS
ATGAAGAATCCCTACAACAA+TGG 0.511742 tig0026810:+27707 Msa1431180:CDS
TTGACCACACTAGATCAAAC+TGG 0.513141 tig0026810:-27438 None:intergenic
AGGGTCATTGCGTCTATCAA+TGG 0.514463 tig0026810:+24463 Msa1431180:CDS
CGTTCAGCATTAACATGGAA+GGG 0.521906 tig0026810:+28245 Msa1431180:CDS
AGATTCTTAACTATCTCTTG+TGG 0.523094 tig0026810:-29476 None:intergenic
AGGACATCAAATCAGCAGAT+TGG 0.524852 tig0026810:+28186 Msa1431180:intron
AATAGTAACATGGTGTCATA+GGG 0.525266 tig0026810:+27672 Msa1431180:CDS
TCAAACTGGCCGTCAGGGAA+TGG 0.527365 tig0026810:-27424 None:intergenic
TATCAAAATAAATGACATGT+AGG 0.527639 tig0026810:-28984 None:intergenic
GATGTTGGGTGTGGCATAGG+GGG 0.529490 tig0026810:+26867 Msa1431180:CDS
GACTGAATAAGTGATATTGA+AGG 0.532518 tig0026810:+29070 Msa1431180:three_prime_UTR
CCAAAGAGTGTAGTTGATGT+TGG 0.533283 tig0026810:+26852 Msa1431180:CDS
TGATGTTGGGTGTGGCATAG+GGG 0.537744 tig0026810:+26866 Msa1431180:CDS
AGCTGAAAGAGCTAATGCTC+TGG 0.537978 tig0026810:+26956 Msa1431180:CDS
ATGTTCTTGGCCATTGTGGA+TGG 0.538737 tig0026810:+29224 Msa1431180:three_prime_UTR
CAAAGAGTGTAGTTGATGTT+GGG 0.545229 tig0026810:+26853 Msa1431180:CDS
AAATTTGGGGCAAGTTGTGT+AGG 0.545845 tig0026810:+26912 Msa1431180:CDS
TCAGCAGTTGAGCACCACTC+TGG 0.547647 tig0026810:-27772 None:intergenic
GCCATTGTGGATGGATTGTG+GGG 0.548971 tig0026810:+29233 Msa1431180:three_prime_UTR
GGCCAAAATGGAGCAACAAA+GGG 0.551098 tig0026810:-28212 None:intergenic
GTTTGATCTAGTGTGGTCAA+TGG 0.552518 tig0026810:+27441 Msa1431180:CDS
AAGAACATGTTATTGCTCAA+TGG 0.553595 tig0026810:-29209 None:intergenic
TGGCCAAAATGGAGCAACAA+AGG 0.554035 tig0026810:-28213 None:intergenic
TTCCACATCCATTCACCGAC+CGG 0.556466 tig0026810:+29294 Msa1431180:three_prime_UTR
TTAGCACGGGTAGCAGCACC+GGG 0.557174 tig0026810:+27637 Msa1431180:CDS
AAGAAGAAGAAACTTCAGTT+GGG 0.559304 tig0026810:+24530 Msa1431180:CDS
ACGTTCAGCATTAACATGGA+AGG 0.559901 tig0026810:+28244 Msa1431180:CDS
ACTATTATTATGGTGCCACC+CGG 0.564921 tig0026810:-27655 None:intergenic
TCGAAAGCCTGAAAATGCAG+AGG 0.567709 tig0026810:+28935 Msa1431180:CDS
CTAGATCAAACTGGCCGTCA+GGG 0.569043 tig0026810:-27429 None:intergenic
AATGCTCTGGCTGTTGCTCA+AGG 0.574221 tig0026810:+26969 Msa1431180:CDS
ATTAACTACCTGAAGGGACA+TGG 0.576544 tig0026810:-27815 None:intergenic
ATCCCTACAACAATGGGAGA+AGG 0.577935 tig0026810:+27714 Msa1431180:CDS
TCAGCAGTAGAAGAAGAAAA+GGG 0.587307 tig0026810:+24444 Msa1431180:CDS
TCTAGGTACACACGAAACTA+CGG 0.588897 tig0026810:-24220 None:intergenic
AATGCTGAACGTATCACTGC+TGG 0.591367 tig0026810:-28233 None:intergenic
GGCGGCGGTGAAAGAAGCGA+TGG 0.597232 tig0026810:+24484 Msa1431180:CDS
TAGCTCTTTCAGCTTGAACA+GGG 0.597928 tig0026810:-26947 None:intergenic
TAACATGTTCTTGGCCATTG+TGG 0.598975 tig0026810:+29220 Msa1431180:three_prime_UTR
GTTGGACAACTTATAGGTGT+AGG 0.604222 tig0026810:-24087 None:intergenic
TAGAGCGTCAGCAACTTGAA+AGG 0.605316 tig0026810:-27395 None:intergenic
GAAAGCATGTGGACGCCGGT+CGG 0.606789 tig0026810:-29309 None:intergenic
AGCGCGTGTACCGTTGCAAG+TGG 0.608895 tig0026810:+24304 Msa1431180:five_prime_UTR
AGTGTAGTTGATGTTGGGTG+TGG 0.612189 tig0026810:+26858 Msa1431180:CDS
ATATTAATTAACTACCTGAA+GGG 0.613275 tig0026810:-27821 None:intergenic
CTTTCACAGTAGAAAGCATG+TGG 0.614726 tig0026810:-29320 None:intergenic
GTTTGTTGGTGAGTTAGCAC+GGG 0.616520 tig0026810:+27624 Msa1431180:CDS
TAGGTGTAGGACGCTATGAT+CGG 0.617514 tig0026810:-24074 None:intergenic
ATTGCGTCTATCAATGGCGG+CGG 0.617943 tig0026810:+24469 Msa1431180:CDS
GGCGGTGAAAGAAGCGATGG+TGG 0.621331 tig0026810:+24487 Msa1431180:CDS
TTGTAGGGATTCTTCATTCG+GGG 0.621575 tig0026810:-27701 None:intergenic
TGATACGTTCAGCATTAACA+TGG 0.622052 tig0026810:+28240 Msa1431180:CDS
GGTATATGGGAGAATATTTG+GGG 0.625495 tig0026810:+24581 Msa1431180:CDS
TTGTGTGTTACCACTTGCAA+CGG 0.629244 tig0026810:-24314 None:intergenic
TTCACCTCAATCTTGCGAAG+TGG 0.629679 tig0026810:+28269 Msa1431180:CDS
GATGATAGAAGGATTCAGGA+AGG 0.633554 tig0026810:+28884 Msa1431180:CDS
ATGATAGAAGGATTCAGGAA+GGG 0.634567 tig0026810:+28885 Msa1431180:CDS
TGTAGCACTGGAGTATGATG+TGG 0.635922 tig0026810:+29183 Msa1431180:three_prime_UTR
ACGGCCAGTTTGATCTAGTG+TGG 0.645283 tig0026810:+27434 Msa1431180:CDS
AGTAGAAAGCATGTGGACGC+CGG 0.647165 tig0026810:-29313 None:intergenic
GTCATTGCGTCTATCAATGG+CGG 0.656657 tig0026810:+24466 Msa1431180:CDS
CGAAAGCCTGAAAATGCAGA+GGG 0.659995 tig0026810:+28936 Msa1431180:CDS
GCATATGCCTAACAAACCAA+AGG 0.660215 tig0026810:+27474 Msa1431180:CDS
GTACCTGGCCAAGAAATTTG+GGG 0.663725 tig0026810:+26899 Msa1431180:CDS
ATCACTTATTCAGTCCCAGT+AGG 0.671400 tig0026810:-29062 None:intergenic
ATAGTATCTCTGTGGTGTTG+AGG 0.675935 tig0026810:-24398 None:intergenic
ACCCCACAATCCATCCACAA+TGG 0.682695 tig0026810:-29234 None:intergenic
GGTAACACACAACACAACAA+TGG 0.682999 tig0026810:+24325 Msa1431180:exon
AGCACTGGAGTATGATGTGG+CGG 0.683510 tig0026810:+29186 Msa1431180:three_prime_UTR
AGTCCCAGTAGGATCTGACA+TGG 0.687661 tig0026810:-29051 None:intergenic
GCACCATAATAATAGTAACA+TGG 0.689337 tig0026810:+27662 Msa1431180:CDS
AGTGCAGTATGCAAGTGAGA+CGG 0.690366 tig0026810:-27512 None:intergenic
CTAGAACAACCATTCCCTGA+CGG 0.703190 tig0026810:+27415 Msa1431180:CDS
GCACGGGTAGCAGCACCGGG+TGG 0.705737 tig0026810:+27640 Msa1431180:CDS
CTAGTGTGGTCAATGGAGAG+CGG 0.706985 tig0026810:+27448 Msa1431180:CDS
TAGTAATGATAGTATCTCTG+TGG 0.714916 tig0026810:-24406 None:intergenic
ACAGAAACTCATCAAACGTG+CGG 0.727187 tig0026810:-29375 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAATTTTGATATTTTTTA+TGG - tig0026810:24112-24131 None:intergenic 10.0%
!!! ATTTTGATATTTTTTATGGT+TGG - tig0026810:24108-24127 None:intergenic 15.0%
!! AAAATTGTTACTACATTATA+TGG + tig0026810:24123-24142 Msa1431180:five_prime_UTR 15.0%
!! TACTATTAAATCATAATTCT+AGG - tig0026810:24240-24259 None:intergenic 15.0%
!!! TTTTTTTTTTCATTTTTTGC+TGG + tig0026810:26746-26765 Msa1431180:intron 15.0%
!! TGTAAAAAAATAGATGATAA+AGG - tig0026810:27031-27050 None:intergenic 15.0%
!!! AAACAATTTTTGTATGAAAT+AGG - tig0026810:27602-27621 None:intergenic 15.0%
!!! TTTTGAACAATTTCTTATAT+TGG + tig0026810:27967-27986 Msa1431180:intron 15.0%
!! TCAAATAATTCAATCAAATC+AGG - tig0026810:25067-25086 None:intergenic 20.0%
!!! AAACTATCTTTGAAAACTTA+TGG - tig0026810:25138-25157 None:intergenic 20.0%
!! ACATTAGTGTTTATAATGAT+AGG + tig0026810:25209-25228 Msa1431180:intron 20.0%
!!! AATCTTCATTTTTTCATCTA+AGG - tig0026810:25280-25299 None:intergenic 20.0%
!! AATCATTAATTTATCACGTT+TGG + tig0026810:25303-25322 Msa1431180:intron 20.0%
!! ATCATTAATTTATCACGTTT+GGG + tig0026810:25304-25323 Msa1431180:intron 20.0%
!!! TATCGTAATTTTGATACATT+TGG - tig0026810:25402-25421 None:intergenic 20.0%
!! CAATAAACATATTTAACTCT+GGG - tig0026810:25670-25689 None:intergenic 20.0%
!!! TTTGCTGGTAAATTTTATTT+TGG + tig0026810:26761-26780 Msa1431180:intron 20.0%
!! ATATTAATTAACTACCTGAA+GGG - tig0026810:27824-27843 None:intergenic 20.0%
!! TATATTAATTAACTACCTGA+AGG - tig0026810:27825-27844 None:intergenic 20.0%
!! TGAACACTTATATTAGTATT+TGG + tig0026810:27919-27938 Msa1431180:intron 20.0%
!! TTTCCATATCAATAAGTTTA+CGG - tig0026810:28038-28057 None:intergenic 20.0%
!! TATTGATATGGAAAAACTTA+AGG + tig0026810:28044-28063 Msa1431180:intron 20.0%
!!! TATTGTTAGTATTTTGTTGA+GGG + tig0026810:28453-28472 Msa1431180:intron 20.0%
!! GGAGTATATAACATTAATTT+GGG - tig0026810:28607-28626 None:intergenic 20.0%
!! TGGAGTATATAACATTAATT+TGG - tig0026810:28608-28627 None:intergenic 20.0%
!!! TAAATTGATAATGATCTTGT+TGG + tig0026810:28777-28796 Msa1431180:intron 20.0%
!! TATCAAAATAAATGACATGT+AGG - tig0026810:28987-29006 None:intergenic 20.0%
!!! TTTAATATTTTTTGTAGCAC+TGG + tig0026810:29171-29190 Msa1431180:three_prime_UTR 20.0%
!!! AAAAGTTTTGAAATTCTATG+TGG + tig0026810:29442-29461 Msa1431180:three_prime_UTR 20.0%
!! TCAAAGAGTTTTCAATCATA+CGG - tig0026810:24679-24698 None:intergenic 25.0%
!! AAAAAAGAGAGCATATATGT+AGG + tig0026810:25040-25059 Msa1431180:intron 25.0%
!! AAAAAGAGAGCATATATGTA+GGG + tig0026810:25041-25060 Msa1431180:intron 25.0%
! ATTAAGATGTATATCCAAAC+AGG + tig0026810:25253-25272 Msa1431180:intron 25.0%
! TTAAGATGTATATCCAAACA+GGG + tig0026810:25254-25273 Msa1431180:intron 25.0%
! TCATTAATTTATCACGTTTG+GGG + tig0026810:25305-25324 Msa1431180:intron 25.0%
!!! TCTTTGGTTAGTTTTGTTAT+CGG + tig0026810:25473-25492 Msa1431180:intron 25.0%
! GTGTCTTTCATTAATCAATT+TGG + tig0026810:25498-25517 Msa1431180:intron 25.0%
! GTCTTATGTTAGTAATTTCA+TGG - tig0026810:25525-25544 None:intergenic 25.0%
!!! TTTTGGTCTTTAAATGTGTA+AGG - tig0026810:25602-25621 None:intergenic 25.0%
! CCAATAAACATATTTAACTC+TGG - tig0026810:25671-25690 None:intergenic 25.0%
! CCAGAGTTAAATATGTTTAT+TGG + tig0026810:25668-25687 Msa1431180:intron 25.0%
!!! ATTGGAGTAAATTGTCATTT+TGG + tig0026810:25686-25705 Msa1431180:intron 25.0%
!!! AATCATTTTAGTCCCTAAAT+GGG - tig0026810:25849-25868 None:intergenic 25.0%
!!! TAATCATTTTAGTCCCTAAA+TGG - tig0026810:25850-25869 None:intergenic 25.0%
! ATATTTAAACCGTGTAACTT+GGG - tig0026810:25942-25961 None:intergenic 25.0%
! TTACACGGTTTAAATATCTT+GGG + tig0026810:25945-25964 Msa1431180:intron 25.0%
!!! CTGGTAAATTTTATTTTGGT+TGG + tig0026810:26765-26784 Msa1431180:intron 25.0%
!!! AAATTTTATTTTGGTTGGAC+TGG + tig0026810:26770-26789 Msa1431180:intron 25.0%
! TATTATAATGAATCTCACCA+AGG + tig0026810:27088-27107 Msa1431180:intron 25.0%
! ATTATAATGAATCTCACCAA+GGG + tig0026810:27089-27108 Msa1431180:intron 25.0%
!! ATATGATACGTGTTTTCAAT+CGG - tig0026810:27175-27194 None:intergenic 25.0%
! CAAAAATTGTTTCAGTTTGT+TGG + tig0026810:27610-27629 Msa1431180:CDS 25.0%
! ACACCATGTTACTATTATTA+TGG - tig0026810:27668-27687 None:intergenic 25.0%
! TAACCGTAAACTTATTGATA+TGG + tig0026810:28032-28051 Msa1431180:intron 25.0%
!! GTATTGTTAGTATTTTGTTG+AGG + tig0026810:28452-28471 Msa1431180:intron 25.0%
! TCATATAAACCATTAACTGT+TGG - tig0026810:28651-28670 None:intergenic 25.0%
! ATTTCACACATATTCAGAAA+AGG - tig0026810:28714-28733 None:intergenic 25.0%
! TATCAATTTATGTACTCCTT+TGG - tig0026810:28767-28786 None:intergenic 25.0%
!! TCTAATTTGTGTTATAGCAT+TGG + tig0026810:29496-29515 Msa1431180:three_prime_UTR 25.0%
TTTATGGTTGGACAACTTAT+AGG - tig0026810:24096-24115 None:intergenic 30.0%
! AAACAAGGCATAATTTTTGC+TGG - tig0026810:24273-24292 None:intergenic 30.0%
CGCTATACAACAAAAAAACA+AGG - tig0026810:24288-24307 None:intergenic 30.0%
TAGTAATGATAGTATCTCTG+TGG - tig0026810:24409-24428 None:intergenic 30.0%
AAGAAGAAGAAACTTCAGTT+GGG + tig0026810:24530-24549 Msa1431180:CDS 30.0%
TGGTATATGGGAGAATATTT+GGG + tig0026810:24580-24599 Msa1431180:CDS 30.0%
GGACATAGTCAAATTCAAAA+CGG - tig0026810:24835-24854 None:intergenic 30.0%
AACCTATGAGTTAAATTGTC+AGG + tig0026810:25337-25356 Msa1431180:intron 30.0%
AACCTGACAATTTAACTCAT+AGG - tig0026810:25342-25361 None:intergenic 30.0%
ATGAGTTAAATTGTCAGGTT+TGG + tig0026810:25342-25361 Msa1431180:intron 30.0%
ATCAAAGTAGTACAAACCAA+AGG + tig0026810:25751-25770 Msa1431180:intron 30.0%
TATTTAAACCGTGTAACTTG+GGG - tig0026810:25941-25960 None:intergenic 30.0%
GATATTTAAACCGTGTAACT+TGG - tig0026810:25943-25962 None:intergenic 30.0%
GTTACACGGTTTAAATATCT+TGG + tig0026810:25944-25963 Msa1431180:intron 30.0%
TAAATCATCGTATTCAAGCT+GGG + tig0026810:26005-26024 Msa1431180:intron 30.0%
AGCTGAAAGGAAAGTTATAT+CGG + tig0026810:26083-26102 Msa1431180:intron 30.0%
!! TAGAAAAGTTGGTGGAAAAT+AGG + tig0026810:26281-26300 Msa1431180:intron 30.0%
TTGATCTACTCTTCTAACAA+CGG - tig0026810:26347-26366 None:intergenic 30.0%
TAGAAGAGTAGATCAAATAG+AGG + tig0026810:26351-26370 Msa1431180:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - tig0026810:26406-26425 None:intergenic 30.0%
CTTTCTAATGGTTTCTCTAA+TGG - tig0026810:26416-26435 None:intergenic 30.0%
CATTAGAGAAACCATTAGAA+AGG + tig0026810:26414-26433 Msa1431180:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + tig0026810:26423-26442 Msa1431180:intron 30.0%
! TTGGATCCAAATATGGTTTT+TGG + tig0026810:26454-26473 Msa1431180:intron 30.0%
GTGATTGAATATAACCACAT+AGG + tig0026810:26584-26603 Msa1431180:intron 30.0%
ATACATGCATCAATAACAAC+AGG - tig0026810:26809-26828 None:intergenic 30.0%
ATACAAGTTCTTAATACCCT+TGG - tig0026810:27108-27127 None:intergenic 30.0%
GAATAGAATCTACTCATATG+TGG + tig0026810:27129-27148 Msa1431180:intron 30.0%
TTGCATTGCATAAACAGTAA+AGG - tig0026810:27360-27379 None:intergenic 30.0%
GAGATTGATTACAACTTTAC+TGG - tig0026810:27569-27588 None:intergenic 30.0%
GCACCATAATAATAGTAACA+TGG + tig0026810:27662-27681 Msa1431180:CDS 30.0%
!! TAATAGTAACATGGTGTCAT+AGG + tig0026810:27671-27690 Msa1431180:CDS 30.0%
!! AATAGTAACATGGTGTCATA+GGG + tig0026810:27672-27691 Msa1431180:CDS 30.0%
! ATTCATTTTATCTTCCAGAG+TGG + tig0026810:27758-27777 Msa1431180:CDS 30.0%
TGCAACTATCTCATTTGAAT+TGG - tig0026810:28080-28099 None:intergenic 30.0%
TGTTTGATTGCTATCTATCT+AGG + tig0026810:28166-28185 Msa1431180:intron 30.0%
! TTTTCCTAAACAACAAATGC+TGG + tig0026810:28430-28449 Msa1431180:intron 30.0%
!! AATACCAGCATTTGTTGTTT+AGG - tig0026810:28437-28456 None:intergenic 30.0%
TAATGCAACACGGATATATA+AGG - tig0026810:28546-28565 None:intergenic 30.0%
ATCAAACATGTAATGCAACA+CGG - tig0026810:28556-28575 None:intergenic 30.0%
CCATTATCATAAATGCATAC+TGG - tig0026810:28628-28647 None:intergenic 30.0%
CCAGTATGCATTTATGATAA+TGG + tig0026810:28625-28644 Msa1431180:intron 30.0%
!!! TCATTTTTGTTATTGTGTGC+AGG + tig0026810:28825-28844 Msa1431180:intron 30.0%
GCAGGTCTAAAAACTATAAA+AGG + tig0026810:28843-28862 Msa1431180:intron 30.0%
GACTGAATAAGTGATATTGA+AGG + tig0026810:29070-29089 Msa1431180:three_prime_UTR 30.0%
GTTCTTGAACAAAACTCTAA+TGG + tig0026810:29107-29126 Msa1431180:three_prime_UTR 30.0%
! ACATTGAAGATGCTGATTAT+CGG - tig0026810:29136-29155 None:intergenic 30.0%
AAGAACATGTTATTGCTCAA+TGG - tig0026810:29212-29231 None:intergenic 30.0%
ATTGAGCAATAACATGTTCT+TGG + tig0026810:29211-29230 Msa1431180:three_prime_UTR 30.0%
TTAAGAACAAAGTGAGTGTT+TGG + tig0026810:29271-29290 Msa1431180:three_prime_UTR 30.0%
AACACGCTAAAAATTGAGTT+CGG + tig0026810:29408-29427 Msa1431180:three_prime_UTR 30.0%
! AAATTCTATGTGGCACTTTT+GGG + tig0026810:29452-29471 Msa1431180:three_prime_UTR 30.0%
AGATTCTTAACTATCTCTTG+TGG - tig0026810:29479-29498 None:intergenic 30.0%
TTTCTTCTTCTACTGCTGAA+TGG - tig0026810:24443-24462 None:intergenic 35.0%
TTCAGCAGTAGAAGAAGAAA+AGG + tig0026810:24443-24462 Msa1431180:CDS 35.0%
TCAGCAGTAGAAGAAGAAAA+GGG + tig0026810:24444-24463 Msa1431180:CDS 35.0%
GAAGAAGAAGAAACTTCAGT+TGG + tig0026810:24529-24548 Msa1431180:CDS 35.0%
!! GAGTTTTATGATGAGTCTTC+TGG + tig0026810:24560-24579 Msa1431180:CDS 35.0%
ATGATGAGTCTTCTGGTATA+TGG + tig0026810:24567-24586 Msa1431180:CDS 35.0%
TGATGAGTCTTCTGGTATAT+GGG + tig0026810:24568-24587 Msa1431180:CDS 35.0%
CTGGTATATGGGAGAATATT+TGG + tig0026810:24579-24598 Msa1431180:CDS 35.0%
GGTATATGGGAGAATATTTG+GGG + tig0026810:24581-24600 Msa1431180:CDS 35.0%
GAAACAGAAACAGTAGAATC+AGG - tig0026810:24635-24654 None:intergenic 35.0%
TGTCCAAATCAAGTTCACTA+CGG + tig0026810:24850-24869 Msa1431180:intron 35.0%
TTAATGAGTTCCACCAGTAA+TGG + tig0026810:24887-24906 Msa1431180:intron 35.0%
CTATCTGAACAATCCATTAC+TGG - tig0026810:24903-24922 None:intergenic 35.0%
TCGATTGGTGAAACAATTCT+TGG + tig0026810:24931-24950 Msa1431180:intron 35.0%
GTCTTGTATGTGTCTTTCTT+TGG + tig0026810:25457-25476 Msa1431180:intron 35.0%
!!! CTCTGCTTCATAGCTTTTTT+TGG - tig0026810:25619-25638 None:intergenic 35.0%
TATCATAACCCCAAGTTACA+CGG + tig0026810:25930-25949 Msa1431180:intron 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG - tig0026810:25972-25991 None:intergenic 35.0%
GTAAATCATCGTATTCAAGC+TGG + tig0026810:26004-26023 Msa1431180:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + tig0026810:26070-26089 Msa1431180:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - tig0026810:26079-26098 None:intergenic 35.0%
AGACTAGATAGGATAGGATT+AGG + tig0026810:26218-26237 Msa1431180:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + tig0026810:26270-26289 Msa1431180:intron 35.0%
ACCTATAGTAGAAAAGTTGG+TGG + tig0026810:26273-26292 Msa1431180:intron 35.0%
! TCCACCAACTTTTCTACTAT+AGG - tig0026810:26277-26296 None:intergenic 35.0%
GAAAATAGGCTTAGATGGTT+TGG + tig0026810:26295-26314 Msa1431180:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - tig0026810:26428-26447 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + tig0026810:26447-26466 Msa1431180:intron 35.0%
ATGACGCCAAAAACCATATT+TGG - tig0026810:26463-26482 None:intergenic 35.0%
CATCAGATTGAAGATGTAGT+TGG - tig0026810:26626-26645 None:intergenic 35.0%
ACATCTTCAATCTGATGTCT+TGG + tig0026810:26629-26648 Msa1431180:intron 35.0%
!! CTTGGTGCTACATAGAAAAA+AGG + tig0026810:26647-26666 Msa1431180:intron 35.0%
! CAAAGAGTGTAGTTGATGTT+GGG + tig0026810:26853-26872 Msa1431180:CDS 35.0%
ATCAATGTCAGTATCGTGTT+TGG + tig0026810:27284-27303 Msa1431180:intron 35.0%
ATGCAATGCAATGCAATTGT+AGG + tig0026810:27369-27388 Msa1431180:intron 35.0%
!! ATTAGGACCTTTGGTTTGTT+AGG - tig0026810:27484-27503 None:intergenic 35.0%
GCAAAAGAAATTAGGACCTT+TGG - tig0026810:27493-27512 None:intergenic 35.0%
TGTTGTAGGGATTCTTCATT+CGG - tig0026810:27706-27725 None:intergenic 35.0%
ATGAAGAATCCCTACAACAA+TGG + tig0026810:27707-27726 Msa1431180:CDS 35.0%
TGAAGAATCCCTACAACAAT+GGG + tig0026810:27708-27727 Msa1431180:CDS 35.0%
TCACTATGTGCTATCAAGTT+AGG + tig0026810:28132-28151 Msa1431180:intron 35.0%
TGATACGTTCAGCATTAACA+TGG + tig0026810:28240-28259 Msa1431180:CDS 35.0%
! AGACTAGTGATTTGAGACAA+GGG - tig0026810:28331-28350 None:intergenic 35.0%
! AAGACTAGTGATTTGAGACA+AGG - tig0026810:28332-28351 None:intergenic 35.0%
! TGTTAGTATTTTGTTGAGGG+TGG + tig0026810:28456-28475 Msa1431180:intron 35.0%
AGGAATGATAAGGAGATTGA+GGG - tig0026810:28490-28509 None:intergenic 35.0%
AGTTTAGGAGAGGAATGATA+AGG - tig0026810:28500-28519 None:intergenic 35.0%
!! TGATAATGGCCAACAGTTAA+TGG + tig0026810:28639-28658 Msa1431180:intron 35.0%
CTGAATCCTTCTATCATCAA+TGG - tig0026810:28882-28901 None:intergenic 35.0%
! CATTGATGATAGAAGGATTC+AGG + tig0026810:28880-28899 Msa1431180:CDS 35.0%
ATGATAGAAGGATTCAGGAA+GGG + tig0026810:28885-28904 Msa1431180:CDS 35.0%
! GAAATTCTATGTGGCACTTT+TGG + tig0026810:29451-29470 Msa1431180:three_prime_UTR 35.0%
GTTGGACAACTTATAGGTGT+AGG - tig0026810:24090-24109 None:intergenic 40.0%
TTTCATGTCTGACGTGTGTT+TGG - tig0026810:24178-24197 None:intergenic 40.0%
TCTAGGTACACACGAAACTA+CGG - tig0026810:24223-24242 None:intergenic 40.0%
TTGTGTGTTACCACTTGCAA+CGG - tig0026810:24317-24336 None:intergenic 40.0%
GGTAACACACAACACAACAA+TGG + tig0026810:24325-24344 Msa1431180:exon 40.0%
! ATAGTATCTCTGTGGTGTTG+AGG - tig0026810:24401-24420 None:intergenic 40.0%
! ACTTTTGCTTCTCTTTCGAC+TGG + tig0026810:24698-24717 Msa1431180:CDS 40.0%
CAACCGTAGTGAACTTGATT+TGG - tig0026810:24856-24875 None:intergenic 40.0%
CAAATCAAGTTCACTACGGT+TGG + tig0026810:24854-24873 Msa1431180:intron 40.0%
TCTGAACAATCCATTACTGG+TGG - tig0026810:24900-24919 None:intergenic 40.0%
CAGATAGACTTGAGTTCGAT+TGG + tig0026810:24916-24935 Msa1431180:intron 40.0%
GCTAGACAGTAAGAAAAGTC+TGG - tig0026810:24957-24976 None:intergenic 40.0%
TTAGCAGAACCCATTATCGA+AGG + tig0026810:24988-25007 Msa1431180:intron 40.0%
TAGCAGAACCCATTATCGAA+GGG + tig0026810:24989-25008 Msa1431180:intron 40.0%
TGCGTTAACCCTTCGATAAT+GGG - tig0026810:25000-25019 None:intergenic 40.0%
TTGCGTTAACCCTTCGATAA+TGG - tig0026810:25001-25020 None:intergenic 40.0%
!! TTTTCATCTAAGGCCCTGTT+TGG - tig0026810:25270-25289 None:intergenic 40.0%
AGTCGCTGTCATTATAGTCT+CGG + tig0026810:25723-25742 Msa1431180:intron 40.0%
TGACATTTCCTCACCCATTT+AGG + tig0026810:25833-25852 Msa1431180:intron 40.0%
GACATTTCCTCACCCATTTA+GGG + tig0026810:25834-25853 Msa1431180:intron 40.0%
! TTTTAGTCCCTAAATGGGTG+AGG - tig0026810:25844-25863 None:intergenic 40.0%
AAAGCTATGAAGCAGAGACA+TGG + tig0026810:25873-25892 Msa1431180:intron 40.0%
GGGTCCATAGTACAAAATGA+CGG + tig0026810:25965-25984 Msa1431180:intron 40.0%
ATCGGCAATGTTGTATGGTA+CGG + tig0026810:26117-26136 Msa1431180:intron 40.0%
GATGAGTGGTAAGACTAGAT+AGG + tig0026810:26207-26226 Msa1431180:intron 40.0%
GTGGTAAGACTAGATAGGAT+AGG + tig0026810:26212-26231 Msa1431180:intron 40.0%
TGACACCATTAGAGAAAGAG+TGG + tig0026810:26243-26262 Msa1431180:intron 40.0%
GACACCATTAGAGAAAGAGT+GGG + tig0026810:26244-26263 Msa1431180:intron 40.0%
ACACCATTAGAGAAAGAGTG+GGG + tig0026810:26245-26264 Msa1431180:intron 40.0%
TGGTGGAAAATAGGCTTAGA+TGG + tig0026810:26290-26309 Msa1431180:intron 40.0%
AGATCAAATAGAGGAGAGTC+AGG + tig0026810:26360-26379 Msa1431180:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + tig0026810:26376-26395 Msa1431180:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + tig0026810:26435-26454 Msa1431180:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - tig0026810:26504-26523 None:intergenic 40.0%
TTACACGACATCAACCTATG+TGG - tig0026810:26601-26620 None:intergenic 40.0%
GCTCAGATGATCCATCAAAA+TGG + tig0026810:26829-26848 Msa1431180:intron 40.0%
!! ACACTCTTTGGCCATTTTGA+TGG - tig0026810:26843-26862 None:intergenic 40.0%
CCAACATCAACTACACTCTT+TGG - tig0026810:26855-26874 None:intergenic 40.0%
! CCAAAGAGTGTAGTTGATGT+TGG + tig0026810:26852-26871 Msa1431180:CDS 40.0%
ACAACTTGCCCCAAATTTCT+TGG - tig0026810:26910-26929 None:intergenic 40.0%
! AAATTTGGGGCAAGTTGTGT+AGG + tig0026810:26912-26931 Msa1431180:CDS 40.0%
TAGCTCTTTCAGCTTGAACA+GGG - tig0026810:26950-26969 None:intergenic 40.0%
! TTAGCTCTTTCAGCTTGAAC+AGG - tig0026810:26951-26970 None:intergenic 40.0%
!! TGCTCAAGGATTAGCTGATA+AGG + tig0026810:26983-27002 Msa1431180:CDS 40.0%
TTGACCACACTAGATCAAAC+TGG - tig0026810:27441-27460 None:intergenic 40.0%
GTTTGATCTAGTGTGGTCAA+TGG + tig0026810:27441-27460 Msa1431180:CDS 40.0%
GCATATGCCTAACAAACCAA+AGG + tig0026810:27474-27493 Msa1431180:CDS 40.0%
GTGAGACGGCAAAAGAAATT+AGG - tig0026810:27501-27520 None:intergenic 40.0%
!! AGTTTGTTGGTGAGTTAGCA+CGG + tig0026810:27623-27642 Msa1431180:CDS 40.0%
!! ACTATTATTATGGTGCCACC+CGG - tig0026810:27658-27677 None:intergenic 40.0%
TTGTAGGGATTCTTCATTCG+GGG - tig0026810:27704-27723 None:intergenic 40.0%
GTTGTAGGGATTCTTCATTC+GGG - tig0026810:27705-27724 None:intergenic 40.0%
ATCCTTCTCCCATTGTTGTA+GGG - tig0026810:27719-27738 None:intergenic 40.0%
ATTAACTACCTGAAGGGACA+TGG - tig0026810:27818-27837 None:intergenic 40.0%
AGGACATCAAATCAGCAGAT+TGG + tig0026810:28186-28205 Msa1431180:intron 40.0%
ACGTTCAGCATTAACATGGA+AGG + tig0026810:28244-28263 Msa1431180:CDS 40.0%
CGTTCAGCATTAACATGGAA+GGG + tig0026810:28245-28264 Msa1431180:CDS 40.0%
ACGTGACACTCAATATAGGA+CGG - tig0026810:28367-28386 None:intergenic 40.0%
GCTAACGTGACACTCAATAT+AGG - tig0026810:28371-28390 None:intergenic 40.0%
TTGAGTGTCACGTTAGCAAA+AGG + tig0026810:28374-28393 Msa1431180:intron 40.0%
GAGGAATGATAAGGAGATTG+AGG - tig0026810:28491-28510 None:intergenic 40.0%
!! ATAAGGTTGGCTTGGTAGTT+GGG - tig0026810:28529-28548 None:intergenic 40.0%
!! TATAAGGTTGGCTTGGTAGT+TGG - tig0026810:28530-28549 None:intergenic 40.0%
! ACGGATATATAAGGTTGGCT+TGG - tig0026810:28537-28556 None:intergenic 40.0%
GCAACACGGATATATAAGGT+TGG - tig0026810:28542-28561 None:intergenic 40.0%
! GCTATGCCATTGATGATAGA+AGG + tig0026810:28873-28892 Msa1431180:CDS 40.0%
GATGATAGAAGGATTCAGGA+AGG + tig0026810:28884-28903 Msa1431180:CDS 40.0%
AGGCTTTCGACATGTGATAA+TGG - tig0026810:28925-28944 None:intergenic 40.0%
ATCACTTATTCAGTCCCAGT+AGG - tig0026810:29065-29084 None:intergenic 40.0%
TAACATGTTCTTGGCCATTG+TGG + tig0026810:29220-29239 Msa1431180:three_prime_UTR 40.0%
! CTTTCACAGTAGAAAGCATG+TGG - tig0026810:29323-29342 None:intergenic 40.0%
ACAGAAACTCATCAAACGTG+CGG - tig0026810:29378-29397 None:intergenic 40.0%
TAGGTGTAGGACGCTATGAT+CGG - tig0026810:24077-24096 None:intergenic 45.0%
TGTCTGACGTGTGTTTGGTT+TGG - tig0026810:24173-24192 None:intergenic 45.0%
AGGGTCATTGCGTCTATCAA+TGG + tig0026810:24463-24482 Msa1431180:CDS 45.0%
GTCATTGCGTCTATCAATGG+CGG + tig0026810:24466-24485 Msa1431180:CDS 45.0%
! GAAAGAAGCGATGGTGGTAA+TGG + tig0026810:24493-24512 Msa1431180:CDS 45.0%
TGGGGTGATCATATGCATCA+TGG + tig0026810:24599-24618 Msa1431180:CDS 45.0%
GGTTCTGCTAATCCAGAGTT+CGG - tig0026810:24979-24998 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG + tig0026810:26008-26027 Msa1431180:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + tig0026810:26017-26036 Msa1431180:intron 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + tig0026810:26031-26050 Msa1431180:intron 45.0%
CTTATCGCACAAAACACCTG+AGG - tig0026810:26050-26069 None:intergenic 45.0%
ATATCGGACAGCAGTCAGAT+CGG + tig0026810:26099-26118 Msa1431180:intron 45.0%
GTCAGATCGGCAATGTTGTA+TGG + tig0026810:26112-26131 Msa1431180:intron 45.0%
CACTTACTTTCCTCTCGTGT+TGG - tig0026810:26162-26181 None:intergenic 45.0%
CGAGAGGAAAGTAAGTGTAG+CGG + tig0026810:26165-26184 Msa1431180:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + tig0026810:26173-26192 Msa1431180:intron 45.0%
CACCATTAGAGAAAGAGTGG+GGG + tig0026810:26246-26265 Msa1431180:intron 45.0%
TACCCCCACTCTTTCTCTAA+TGG - tig0026810:26251-26270 None:intergenic 45.0%
CTTCTAACAACGGCATCTAC+AGG - tig0026810:26337-26356 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + tig0026810:26370-26389 Msa1431180:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0026810:26503-26522 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - tig0026810:26505-26524 None:intergenic 45.0%
! AGTGTAGTTGATGTTGGGTG+TGG + tig0026810:26858-26877 Msa1431180:CDS 45.0%
TTGATGTTGGGTGTGGCATA+GGG + tig0026810:26865-26884 Msa1431180:CDS 45.0%
AGGTACCTGGCCAAGAAATT+TGG + tig0026810:26897-26916 Msa1431180:CDS 45.0%
GGTACCTGGCCAAGAAATTT+GGG + tig0026810:26898-26917 Msa1431180:CDS 45.0%
GTACCTGGCCAAGAAATTTG+GGG + tig0026810:26899-26918 Msa1431180:CDS 45.0%
AGCTGAAAGAGCTAATGCTC+TGG + tig0026810:26956-26975 Msa1431180:CDS 45.0%
! TAGAGCGTCAGCAACTTGAA+AGG - tig0026810:27398-27417 None:intergenic 45.0%
CTAGAACAACCATTCCCTGA+CGG + tig0026810:27415-27434 Msa1431180:CDS 45.0%
AGTGCAGTATGCAAGTGAGA+CGG - tig0026810:27515-27534 None:intergenic 45.0%
! GTTTGTTGGTGAGTTAGCAC+GGG + tig0026810:27624-27643 Msa1431180:CDS 45.0%
ATCCCTACAACAATGGGAGA+AGG + tig0026810:27714-27733 Msa1431180:CDS 45.0%
GATCCTTCTCCCATTGTTGT+AGG - tig0026810:27720-27739 None:intergenic 45.0%
ACTTGAAACCATGTCCCTTC+AGG + tig0026810:27807-27826 Msa1431180:CDS 45.0%
! CTCCCTTTGTTGCTCCATTT+TGG + tig0026810:28210-28229 Msa1431180:CDS 45.0%
GGCCAAAATGGAGCAACAAA+GGG - tig0026810:28215-28234 None:intergenic 45.0%
TGGCCAAAATGGAGCAACAA+AGG - tig0026810:28216-28235 None:intergenic 45.0%
AATGCTGAACGTATCACTGC+TGG - tig0026810:28236-28255 None:intergenic 45.0%
TTCACCTCAATCTTGCGAAG+TGG + tig0026810:28269-28288 Msa1431180:CDS 45.0%
CTTACCACTTCGCAAGATTG+AGG - tig0026810:28276-28295 None:intergenic 45.0%
TCGAAAGCCTGAAAATGCAG+AGG + tig0026810:28935-28954 Msa1431180:CDS 45.0%
CGAAAGCCTGAAAATGCAGA+GGG + tig0026810:28936-28955 Msa1431180:CDS 45.0%
! CATTGACCCTCTGCATTTTC+AGG - tig0026810:28945-28964 None:intergenic 45.0%
! TGTAGCACTGGAGTATGATG+TGG + tig0026810:29183-29202 Msa1431180:three_prime_UTR 45.0%
ATGTTCTTGGCCATTGTGGA+TGG + tig0026810:29224-29243 Msa1431180:three_prime_UTR 45.0%
!!! TCATTATTTAAAATTATTAT+TGG + tig0026810:27252-27271 Msa1431180:intron 5.0%
ATTGCGTCTATCAATGGCGG+CGG + tig0026810:24469-24488 Msa1431180:CDS 50.0%
TCACTACGGTTGGACTCAAG+TGG + tig0026810:24864-24883 Msa1431180:intron 50.0%
CTTACTGTCTAGCCGAACTC+TGG + tig0026810:24964-24983 Msa1431180:intron 50.0%
TGAGTCTTCGAGTGTGCCTT+TGG - tig0026810:25770-25789 None:intergenic 50.0%
TCCAACTTTCACCTCGTCGT+GGG - tig0026810:25905-25924 None:intergenic 50.0%
TGTTGTATGGTACGGAGTGC+TGG + tig0026810:26125-26144 Msa1431180:intron 50.0%
! GTTGTATGGTACGGAGTGCT+GGG + tig0026810:26126-26145 Msa1431180:intron 50.0%
AGGATGTTGTGCTGGATGAG+TGG + tig0026810:26193-26212 Msa1431180:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0026810:26499-26518 None:intergenic 50.0%
GTTGATGTTGGGTGTGGCAT+AGG + tig0026810:26864-26883 Msa1431180:CDS 50.0%
TGATGTTGGGTGTGGCATAG+GGG + tig0026810:26866-26885 Msa1431180:CDS 50.0%
TTGCCCCAAATTTCTTGGCC+AGG - tig0026810:26905-26924 None:intergenic 50.0%
AATGCTCTGGCTGTTGCTCA+AGG + tig0026810:26969-26988 Msa1431180:CDS 50.0%
GTCTGACTGCAACGTGATAC+TGG + tig0026810:27204-27223 Msa1431180:intron 50.0%
TATGTCAGTGCTTCATCGCG+TGG + tig0026810:27319-27338 Msa1431180:intron 50.0%
CTAGATCAAACTGGCCGTCA+GGG - tig0026810:27432-27451 None:intergenic 50.0%
ACTAGATCAAACTGGCCGTC+AGG - tig0026810:27433-27452 None:intergenic 50.0%
ACGGCCAGTTTGATCTAGTG+TGG + tig0026810:27434-27453 Msa1431180:CDS 50.0%
CTAGTGTGGTCAATGGAGAG+CGG + tig0026810:27448-27467 Msa1431180:CDS 50.0%
CGTATCACTGCTGGCCAAAA+TGG - tig0026810:28227-28246 None:intergenic 50.0%
GACGCTCGATATGTGACCAA+AGG + tig0026810:28748-28767 Msa1431180:intron 50.0%
TCTGCCATGTCAGATCCTAC+TGG + tig0026810:29047-29066 Msa1431180:three_prime_UTR 50.0%
CTGCCATGTCAGATCCTACT+GGG + tig0026810:29048-29067 Msa1431180:three_prime_UTR 50.0%
AGTCCCAGTAGGATCTGACA+TGG - tig0026810:29054-29073 None:intergenic 50.0%
! AGCACTGGAGTATGATGTGG+CGG + tig0026810:29186-29205 Msa1431180:three_prime_UTR 50.0%
!! TGGCCATTGTGGATGGATTG+TGG + tig0026810:29231-29250 Msa1431180:three_prime_UTR 50.0%
!! GGCCATTGTGGATGGATTGT+GGG + tig0026810:29232-29251 Msa1431180:three_prime_UTR 50.0%
!! GCCATTGTGGATGGATTGTG+GGG + tig0026810:29233-29252 Msa1431180:three_prime_UTR 50.0%
ACCCCACAATCCATCCACAA+TGG - tig0026810:29237-29256 None:intergenic 50.0%
TTCCACATCCATTCACCGAC+CGG + tig0026810:29294-29313 Msa1431180:three_prime_UTR 50.0%
! AGTAGAAAGCATGTGGACGC+CGG - tig0026810:29316-29335 None:intergenic 50.0%
CATGGACATTTCCCACGACG+AGG + tig0026810:25891-25910 Msa1431180:intron 55.0%
TCCCACGACGAGGTGAAAGT+TGG + tig0026810:25901-25920 Msa1431180:intron 55.0%
CTCCAACTTTCACCTCGTCG+TGG - tig0026810:25906-25925 None:intergenic 55.0%
CGGTTAAGAGCCAACACGAG+AGG + tig0026810:26149-26168 Msa1431180:intron 55.0%
CGGAGATGAGGATGTTGTGC+TGG + tig0026810:26185-26204 Msa1431180:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0026810:26491-26510 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0026810:26490-26509 Msa1431180:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0026810:26491-26510 Msa1431180:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0026810:26497-26516 Msa1431180:intron 55.0%
GATGTTGGGTGTGGCATAGG+GGG + tig0026810:26867-26886 Msa1431180:CDS 55.0%
GTGGCATAGGGGGAAGTTCA+AGG + tig0026810:26877-26896 Msa1431180:CDS 55.0%
! AGGGGGAAGTTCAAGGTACC+TGG + tig0026810:26884-26903 Msa1431180:CDS 55.0%
!! CGGAAGTGTCAGTGCTGCAT+AGG - tig0026810:27155-27174 None:intergenic 55.0%
TCAAACTGGCCGTCAGGGAA+TGG - tig0026810:27427-27446 None:intergenic 55.0%
TCAGCAGTTGAGCACCACTC+TGG - tig0026810:27775-27794 None:intergenic 55.0%
GTAGTTGGGTGGGGGAGTTT+AGG - tig0026810:28515-28534 None:intergenic 55.0%
!! TTGGCTTGGTAGTTGGGTGG+GGG - tig0026810:28523-28542 None:intergenic 55.0%
!! GTTGGCTTGGTAGTTGGGTG+GGG - tig0026810:28524-28543 None:intergenic 55.0%
!! GGTTGGCTTGGTAGTTGGGT+GGG - tig0026810:28525-28544 None:intergenic 55.0%
!! AGGTTGGCTTGGTAGTTGGG+TGG - tig0026810:28526-28545 None:intergenic 55.0%
AGCGCGTGTACCGTTGCAAG+TGG + tig0026810:24304-24323 Msa1431180:five_prime_UTR 60.0%
GGCGGTGAAAGAAGCGATGG+TGG + tig0026810:24487-24506 Msa1431180:CDS 60.0%
!! GTATGGTACGGAGTGCTGGG+CGG + tig0026810:26129-26148 Msa1431180:intron 60.0%
GTTAGCACGGGTAGCAGCAC+CGG + tig0026810:27636-27655 Msa1431180:CDS 60.0%
TTAGCACGGGTAGCAGCACC+GGG + tig0026810:27637-27656 Msa1431180:CDS 60.0%
TGGGTGGGGGAGTTTAGGAG+AGG - tig0026810:28510-28529 None:intergenic 60.0%
! GAAAGCATGTGGACGCCGGT+CGG - tig0026810:29312-29331 None:intergenic 60.0%
GGCGGCGGTGAAAGAAGCGA+TGG + tig0026810:24484-24503 Msa1431180:CDS 65.0%
CGCCGGTCGGTGAATGGATG+TGG - tig0026810:29299-29318 None:intergenic 65.0%
TGTGGACGCCGGTCGGTGAA+TGG - tig0026810:29305-29324 None:intergenic 65.0%
! GCACGGGTAGCAGCACCGGG+TGG + tig0026810:27640-27659 Msa1431180:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0026810 gene 24074 29540 24074 ID=Msa1431180;Name=Msa1431180
tig0026810 mRNA 24074 29540 24074 ID=Msa1431180-mRNA-1;Parent=Msa1431180;Name=Msa1431180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=270|1|0.8|1|1|1|5|575|401
tig0026810 exon 24074 24719 24074 ID=Msa1431180-mRNA-1:exon:7421;Parent=Msa1431180-mRNA-1
tig0026810 exon 26835 27004 26835 ID=Msa1431180-mRNA-1:exon:7422;Parent=Msa1431180-mRNA-1
tig0026810 exon 27391 27828 27391 ID=Msa1431180-mRNA-1:exon:7423;Parent=Msa1431180-mRNA-1
tig0026810 exon 28188 28290 28188 ID=Msa1431180-mRNA-1:exon:7424;Parent=Msa1431180-mRNA-1
tig0026810 exon 28847 29540 28847 ID=Msa1431180-mRNA-1:exon:7425;Parent=Msa1431180-mRNA-1
tig0026810 five_prime_UTR 24074 24343 24074 ID=Msa1431180-mRNA-1:five_prime_utr;Parent=Msa1431180-mRNA-1
tig0026810 CDS 24344 24719 24344 ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810 CDS 26835 27004 26835 ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810 CDS 27391 27828 27391 ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810 CDS 28188 28290 28188 ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810 CDS 28847 28965 28847 ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810 three_prime_UTR 28966 29540 28966 ID=Msa1431180-mRNA-1:three_prime_utr;Parent=Msa1431180-mRNA-1
Gene Sequence

>Msa1431180

ATGGTGACGACAGCGAGAATCTCTTCTTCATTATTACACTGCACACACACATTTCCTCAACACCACAGAGATACTATCATTACTACTACTACTGTACCATTCAGCAGTAGAAGAAGAAAAGGGTCATTGCGTCTATCAATGGCGGCGGTGAAAGAAGCGATGGTGGTAATGGAAGAAGAAGAGAAGAAGAAGAAGAAACTTCAGTTGGGTATTGCTGAGTTTTATGATGAGTCTTCTGGTATATGGGAGAATATTTGGGGTGATCATATGCATCATGGTTTTTATGATCCTGATTCTACTGTTTCTGTTTCTGATCATCGTGCTGCTCAGATCCGTATGATTGAAAACTCTTTGACTTTTGCTTCTCTTTCGACTGATGATCCATCAAAATGGCCAAAGAGTGTAGTTGATGTTGGGTGTGGCATAGGGGGAAGTTCAAGGTACCTGGCCAAGAAATTTGGGGCAAGTTGTGTAGGCATCACTCTCAGCCCTGTTCAAGCTGAAAGAGCTAATGCTCTGGCTGTTGCTCAAGGATTAGCTGATAAGGTGTCCTTTCAAGTTGCTGACGCTCTAGAACAACCATTCCCTGACGGCCAGTTTGATCTAGTGTGGTCAATGGAGAGCGGAGAGCATATGCCTAACAAACCAAAGGTCCTAATTTCTTTTGCCGTCTCACTTGCATACTGCACTTCACTTTCTTTGATATTTTCTGTTCTTTATGCCAGTAAAGTTGTAATCAATCTCATTTCAGTTTCCTATTTCATACAAAAATTGTTTCAGTTTGTTGGTGAGTTAGCACGGGTAGCAGCACCGGGTGGCACCATAATAATAGTAACATGGTGTCATAGGGATCTTGCCCCGAATGAAGAATCCCTACAACAATGGGAGAAGGATCTCTTGAAGAAGATATGTGATTCATTTTATCTTCCAGAGTGGTGCTCAACTGCTGATTATGTCAAATTACTTGAAACCATGTCCCTTCAGGACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGTTCAGCATTAACATGGAAGGGTTTCACCTCAATCTTGCGAAGTGGTCTAAAAACTATAAAAGGAGCTTTAGCTATGCCATTGATGATAGAAGGATTCAGGAAGGGTGTGATTAAGTTTGCCATTATCACATGTCGAAAGCCTGAAAATGCAGAGGGTCAATGA

Protein sequence

>Msa1431180

MVTTARISSSLLHCTHTFPQHHRDTIITTTTVPFSSRRRKGSLRLSMAAVKEAMVVMEEEEKKKKKLQLGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIENSLTFASLSTDDPSKWPKSVVDVGCGIGGSSRYLAKKFGASCVGITLSPVQAERANALAVAQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPNKPKVLISFAVSLAYCTSLSLIFSVLYASKVVINLISVSYFIQKLFQFVGELARVAAPGGTIIIVTWCHRDLAPNEESLQQWEKDLLKKICDSFYLPEWCSTADYVKLLETMSLQDIKSADWSPFVAPFWPAVIRSALTWKGFTSILRSGLKTIKGALAMPLMIEGFRKGVIKFAIITCRKPENAEGQ*