AlfalfaGEDB | Msa1431180

M. sativa cultivar zhongmu-4 / Msa1431180

KEGG: K05928
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0010189 GO:0016740 GO:0016741 GO:0018130 GO:0032259 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050342 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617
PFAM: PF13649.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1431180	XP_024631069.1	83.791	401	18	4	1	401	2	355	0.0	608

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1431180	sp\|Q6ZIK0\|GTOMC_ORYSJ	64.865	333	73	2	67	399	74	362	2.72e-155	445

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1431180	B7FHY7	83.791	401	18	4	1	401	2	355	0.0	608

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005630	Msa1431180	0.979050	3.992890e-147	-8.615850e-47
Msa0032450	Msa1431180	0.813201	2.885343e-51	-8.615850e-47
Msa0033590	Msa1431180	0.812299	4.545656e-51	-8.615850e-47
Msa0033930	Msa1431180	0.812610	3.887049e-51	-8.615850e-47
Msa0040090	Msa1431180	0.808191	3.495650e-50	-8.615850e-47
Msa0041780	Msa1431180	0.860494	1.986796e-63	-8.615850e-47
Msa0081840	Msa1431180	0.806361	8.539073e-50	-8.615850e-47
Msa0087130	Msa1431180	0.815544	8.757065e-52	-8.615850e-47
Msa0090350	Msa1431180	0.823551	1.303088e-53	-8.615850e-47
Msa0091220	Msa1431180	0.801777	7.673560e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1431180	MtrunA17_Chr1g0150551	83.791	401	18	4	1	401	2	355	0.0	608
Msa1431180	MtrunA17_Chr4g0018381	60.268	224	43	4	70	292	16	194	7.01e-89	267
Msa1431180	MtrunA17_Chr3g0089671	26.923	156	103	2	59	214	33	177	3.83e-12	67.0
Msa1431180	MtrunA17_Chr3g0143441	30.345	145	90	4	74	218	77	210	3.03e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1431180	AT1G64970.1	64.350	331	73	2	67	395	60	347	3.22e-151	432
Msa1431180	AT3G18000.1	41.111	90	51	1	133	222	284	371	4.23e-13	71.2
Msa1431180	AT1G73600.1	40.000	90	52	1	133	222	283	370	1.40e-12	69.7
Msa1431180	AT1G73600.2	40.000	90	52	1	133	222	297	384	1.41e-12	69.7
Msa1431180	AT1G48600.1	40.000	90	52	1	133	222	268	355	2.20e-12	68.9
Msa1431180	AT1G48600.2	40.000	90	52	1	133	222	284	371	2.23e-12	68.9
Msa1431180	AT5G13710.1	25.806	155	104	2	60	214	34	177	4.08e-11	64.3
Msa1431180	AT5G13710.2	25.806	155	104	2	60	214	34	177	4.08e-11	64.3

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Find 137 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTTACTACATTATA+TGG	0.301860	tig0026810:+24123	Msa1431180:five_prime_UTR
AAATGCTTTCACAATTTATT+TGG	0.191484	tig0026810:+29519	Msa1431180:three_prime_UTR
AAATTTGGGGCAAGTTGTGT+AGG	0.545845	tig0026810:+26912	Msa1431180:CDS
AAGAACATGTTATTGCTCAA+TGG	0.553595	tig0026810:-29209	None:intergenic
AAGAAGAAGAAACTTCAGTT+GGG	0.559304	tig0026810:+24530	Msa1431180:CDS
AATAGTAACATGGTGTCATA+GGG	0.525266	tig0026810:+27672	Msa1431180:CDS
AATGCTCTGGCTGTTGCTCA+AGG	0.574221	tig0026810:+26969	Msa1431180:CDS
AATGCTGAACGTATCACTGC+TGG	0.591367	tig0026810:-28233	None:intergenic
ACAACTTGCCCCAAATTTCT+TGG	0.230657	tig0026810:-26907	None:intergenic
ACACCATGTTACTATTATTA+TGG	0.233170	tig0026810:-27665	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTATGGTTGGACAACTTAT+AGG	-	tig0026810:24096-24115	None:intergenic	30.0%
CGCTATACAACAAAAAAACA+AGG	-	tig0026810:24288-24307	None:intergenic	30.0%
TAGTAATGATAGTATCTCTG+TGG	-	tig0026810:24409-24428	None:intergenic	30.0%
AAGAAGAAGAAACTTCAGTT+GGG	+	tig0026810:24530-24549	Msa1431180:CDS	30.0%
TGGTATATGGGAGAATATTT+GGG	+	tig0026810:24580-24599	Msa1431180:CDS	30.0%
GGACATAGTCAAATTCAAAA+CGG	-	tig0026810:24835-24854	None:intergenic	30.0%
AACCTATGAGTTAAATTGTC+AGG	+	tig0026810:25337-25356	Msa1431180:intron	30.0%
AACCTGACAATTTAACTCAT+AGG	-	tig0026810:25342-25361	None:intergenic	30.0%
ATGAGTTAAATTGTCAGGTT+TGG	+	tig0026810:25342-25361	Msa1431180:intron	30.0%
ATCAAAGTAGTACAAACCAA+AGG	+	tig0026810:25751-25770	Msa1431180:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026810	gene	24074	29540	24074	ID=Msa1431180;Name=Msa1431180
tig0026810	mRNA	24074	29540	24074	ID=Msa1431180-mRNA-1;Parent=Msa1431180;Name=Msa1431180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=270\|1\|0.8\|1\|1\|1\|5\|575\|401
tig0026810	exon	24074	24719	24074	ID=Msa1431180-mRNA-1:exon:7421;Parent=Msa1431180-mRNA-1
tig0026810	exon	26835	27004	26835	ID=Msa1431180-mRNA-1:exon:7422;Parent=Msa1431180-mRNA-1
tig0026810	exon	27391	27828	27391	ID=Msa1431180-mRNA-1:exon:7423;Parent=Msa1431180-mRNA-1
tig0026810	exon	28188	28290	28188	ID=Msa1431180-mRNA-1:exon:7424;Parent=Msa1431180-mRNA-1
tig0026810	exon	28847	29540	28847	ID=Msa1431180-mRNA-1:exon:7425;Parent=Msa1431180-mRNA-1
tig0026810	five_prime_UTR	24074	24343	24074	ID=Msa1431180-mRNA-1:five_prime_utr;Parent=Msa1431180-mRNA-1
tig0026810	CDS	24344	24719	24344	ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810	CDS	26835	27004	26835	ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810	CDS	27391	27828	27391	ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810	CDS	28188	28290	28188	ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810	CDS	28847	28965	28847	ID=Msa1431180-mRNA-1:cds;Parent=Msa1431180-mRNA-1
tig0026810	three_prime_UTR	28966	29540	28966	ID=Msa1431180-mRNA-1:three_prime_utr;Parent=Msa1431180-mRNA-1

Gene Sequence

>Msa1431180

ATGGTGACGACAGCGAGAATCTCTTCTTCATTATTACACTGCACACACACATTTCCTCAACACCACAGAGATACTATCATTACTACTACTACTGTACCATTCAGCAGTAGAAGAAGAAAAGGGTCATTGCGTCTATCAATGGCGGCGGTGAAAGAAGCGATGGTGGTAATGGAAGAAGAAGAGAAGAAGAAGAAGAAACTTCAGTTGGGTATTGCTGAGTTTTATGATGAGTCTTCTGGTATATGGGAGAATATTTGGGGTGATCATATGCATCATGGTTTTTATGATCCTGATTCTACTGTTTCTGTTTCTGATCATCGTGCTGCTCAGATCCGTATGATTGAAAACTCTTTGACTTTTGCTTCTCTTTCGACTGATGATCCATCAAAATGGCCAAAGAGTGTAGTTGATGTTGGGTGTGGCATAGGGGGAAGTTCAAGGTACCTGGCCAAGAAATTTGGGGCAAGTTGTGTAGGCATCACTCTCAGCCCTGTTCAAGCTGAAAGAGCTAATGCTCTGGCTGTTGCTCAAGGATTAGCTGATAAGGTGTCCTTTCAAGTTGCTGACGCTCTAGAACAACCATTCCCTGACGGCCAGTTTGATCTAGTGTGGTCAATGGAGAGCGGAGAGCATATGCCTAACAAACCAAAGGTCCTAATTTCTTTTGCCGTCTCACTTGCATACTGCACTTCACTTTCTTTGATATTTTCTGTTCTTTATGCCAGTAAAGTTGTAATCAATCTCATTTCAGTTTCCTATTTCATACAAAAATTGTTTCAGTTTGTTGGTGAGTTAGCACGGGTAGCAGCACCGGGTGGCACCATAATAATAGTAACATGGTGTCATAGGGATCTTGCCCCGAATGAAGAATCCCTACAACAATGGGAGAAGGATCTCTTGAAGAAGATATGTGATTCATTTTATCTTCCAGAGTGGTGCTCAACTGCTGATTATGTCAAATTACTTGAAACCATGTCCCTTCAGGACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGTTCAGCATTAACATGGAAGGGTTTCACCTCAATCTTGCGAAGTGGTCTAAAAACTATAAAAGGAGCTTTAGCTATGCCATTGATGATAGAAGGATTCAGGAAGGGTGTGATTAAGTTTGCCATTATCACATGTCGAAAGCCTGAAAATGCAGAGGGTCAATGA

Protein sequence

>Msa1431180

MVTTARISSSLLHCTHTFPQHHRDTIITTTTVPFSSRRRKGSLRLSMAAVKEAMVVMEEEEKKKKKLQLGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIENSLTFASLSTDDPSKWPKSVVDVGCGIGGSSRYLAKKFGASCVGITLSPVQAERANALAVAQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPNKPKVLISFAVSLAYCTSLSLIFSVLYASKVVINLISVSYFIQKLFQFVGELARVAAPGGTIIIVTWCHRDLAPNEESLQQWEKDLLKKICDSFYLPEWCSTADYVKLLETMSLQDIKSADWSPFVAPFWPAVIRSALTWKGFTSILRSGLKTIKGALAMPLMIEGFRKGVIKFAIITCRKPENAEGQ*