Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336630 | XP_003597041.1 | 94.298 | 228 | 13 | 0 | 1 | 228 | 1 | 228 | 4.37e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336630 | sp|O82081|UCC1_ARATH | 49.254 | 134 | 64 | 4 | 1 | 131 | 1 | 133 | 7.22e-42 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0336630 | 0.833359 | 5.581366e-56 | -8.615850e-47 |
| Msa0024280 | Msa0336630 | 0.808200 | 3.480529e-50 | -8.615850e-47 |
| Msa0024290 | Msa0336630 | 0.815881 | 7.365151e-52 | -8.615850e-47 |
| Msa0043120 | Msa0336630 | 0.809163 | 2.167492e-50 | -8.615850e-47 |
| Msa0048950 | Msa0336630 | 0.843617 | 1.254923e-58 | -8.615850e-47 |
| Msa0059880 | Msa0336630 | 0.828970 | 6.684581e-55 | -8.615850e-47 |
| Msa0061600 | Msa0336630 | 0.810937 | 8.992732e-51 | -8.615850e-47 |
| Msa0072030 | Msa0336630 | 0.848114 | 7.534891e-60 | -8.615850e-47 |
| Msa0073970 | Msa0336630 | 0.804237 | 2.378632e-49 | -8.615850e-47 |
| Msa0074620 | Msa0336630 | 0.816745 | 4.719912e-52 | -8.615850e-47 |
| Msa0084150 | Msa0336630 | 0.820821 | 5.600908e-53 | -8.615850e-47 |
| Msa0084160 | Msa0336630 | 0.820617 | 6.240596e-53 | -8.615850e-47 |
| Msa0102930 | Msa0336630 | 0.825198 | 5.340906e-54 | -8.615850e-47 |
| Msa0106130 | Msa0336630 | 0.811014 | 8.652436e-51 | -8.615850e-47 |
| Msa0120050 | Msa0336630 | 0.820720 | 5.910036e-53 | -8.615850e-47 |
| Msa0120070 | Msa0336630 | 0.820942 | 5.254292e-53 | -8.615850e-47 |
| Msa0143150 | Msa0336630 | 0.811017 | 8.641002e-51 | -8.615850e-47 |
| Msa0147670 | Msa0336630 | 0.849632 | 2.854776e-60 | -8.615850e-47 |
| Msa0150910 | Msa0336630 | 0.817106 | 3.915474e-52 | -8.615850e-47 |
| Msa0152740 | Msa0336630 | 0.800474 | 1.416826e-48 | -8.615850e-47 |
| Msa0163340 | Msa0336630 | 0.834133 | 3.574330e-56 | -8.615850e-47 |
| Msa0163370 | Msa0336630 | 0.834392 | 3.078834e-56 | -8.615850e-47 |
| Msa0170990 | Msa0336630 | 0.825067 | 5.736897e-54 | -8.615850e-47 |
| Msa0174960 | Msa0336630 | 0.808537 | 2.950363e-50 | -8.615850e-47 |
| Msa0197750 | Msa0336630 | 0.823783 | 1.150083e-53 | -8.615850e-47 |
| Msa0212550 | Msa0336630 | 0.800701 | 1.273977e-48 | -8.615850e-47 |
| Msa0219210 | Msa0336630 | 0.869158 | 3.817102e-66 | -8.615850e-47 |
| Msa0223880 | Msa0336630 | 0.817592 | 3.043902e-52 | -8.615850e-47 |
| Msa0265060 | Msa0336630 | 0.807090 | 5.989203e-50 | -8.615850e-47 |
| Msa0277280 | Msa0336630 | 0.809410 | 1.918145e-50 | -8.615850e-47 |
| Msa0298270 | Msa0336630 | 0.849755 | 2.637169e-60 | -8.615850e-47 |
| Msa0329650 | Msa0336630 | 0.800827 | 1.200749e-48 | -8.615850e-47 |
| Msa0336630 | Msa0340650 | 0.814610 | 1.411242e-51 | -8.615850e-47 |
| Msa0336630 | Msa0366510 | 0.808787 | 2.608181e-50 | -8.615850e-47 |
| Msa0336630 | Msa0374040 | 0.808195 | 3.490228e-50 | -8.615850e-47 |
| Msa0336630 | Msa0374130 | 0.827744 | 1.320977e-54 | -8.615850e-47 |
| Msa0336630 | Msa0425950 | 0.813461 | 2.529810e-51 | -8.615850e-47 |
| Msa0336630 | Msa0426030 | 0.810896 | 9.175174e-51 | -8.615850e-47 |
| Msa0336630 | Msa0469550 | 0.844557 | 7.021883e-59 | -8.615850e-47 |
| Msa0336630 | Msa0472390 | 0.822711 | 2.046791e-53 | -8.615850e-47 |
| Msa0336630 | Msa0491760 | 0.831092 | 2.030737e-55 | -8.615850e-47 |
| Msa0336630 | Msa0491800 | 0.801343 | 9.417864e-49 | -8.615850e-47 |
| Msa0336630 | Msa0515150 | 0.800286 | 1.547680e-48 | -8.615850e-47 |
| Msa0336630 | Msa0515260 | 0.848232 | 6.990032e-60 | -8.615850e-47 |
| Msa0336630 | Msa0531030 | 0.847911 | 8.571866e-60 | -8.615850e-47 |
| Msa0336630 | Msa0531080 | 0.841913 | 3.560631e-58 | -8.615850e-47 |
| Msa0336630 | Msa0535570 | 0.813936 | 1.988578e-51 | -8.615850e-47 |
| Msa0336630 | Msa0543740 | 0.821766 | 3.390685e-53 | -8.615850e-47 |
| Msa0336630 | Msa0548970 | 0.820551 | 6.462220e-53 | -8.615850e-47 |
| Msa0336630 | Msa0587920 | 0.846107 | 2.673820e-59 | -8.615850e-47 |
| Msa0336630 | Msa0589460 | 0.807981 | 3.875108e-50 | -8.615850e-47 |
| Msa0336630 | Msa0591490 | 0.820809 | 5.638279e-53 | -8.615850e-47 |
| Msa0336630 | Msa0599600 | 0.852414 | 4.689066e-61 | -8.615850e-47 |
| Msa0336630 | Msa0602050 | 0.810939 | 8.979927e-51 | -8.615850e-47 |
| Msa0336630 | Msa0603950 | 0.833665 | 4.679705e-56 | -8.615850e-47 |
| Msa0336630 | Msa0605460 | 0.813181 | 2.914167e-51 | -8.615850e-47 |
| Msa0336630 | Msa0605470 | 0.827363 | 1.630365e-54 | -8.615850e-47 |
| Msa0336630 | Msa0631700 | 0.809935 | 1.479592e-50 | -8.615850e-47 |
| Msa0336630 | Msa0640290 | 0.804071 | 2.576179e-49 | -8.615850e-47 |
| Msa0336630 | Msa0643190 | 0.811441 | 6.989680e-51 | -8.615850e-47 |
| Msa0336630 | Msa0643840 | 0.810919 | 9.071288e-51 | -8.615850e-47 |
| Msa0336630 | Msa0670360 | 0.822484 | 2.311097e-53 | -8.615850e-47 |
| Msa0336630 | Msa0678620 | 0.826702 | 2.347197e-54 | -8.615850e-47 |
| Msa0336630 | Msa0682730 | 0.807885 | 4.061522e-50 | -8.615850e-47 |
| Msa0336630 | Msa0684720 | 0.827756 | 1.311943e-54 | -8.615850e-47 |
| Msa0336630 | Msa0727480 | 0.822721 | 2.035330e-53 | -8.615850e-47 |
| Msa0336630 | Msa0735280 | 0.845093 | 5.035700e-59 | -8.615850e-47 |
| Msa0336630 | Msa0768670 | 0.827500 | 1.511408e-54 | -8.615850e-47 |
| Msa0336630 | Msa0768720 | 0.835149 | 1.985349e-56 | -8.615850e-47 |
| Msa0336630 | Msa0777070 | 0.802270 | 6.076768e-49 | -8.615850e-47 |
| Msa0336630 | Msa0777250 | 0.863300 | 2.745913e-64 | -8.615850e-47 |
| Msa0336630 | Msa0791300 | 0.829170 | 5.979853e-55 | -8.615850e-47 |
| Msa0336630 | Msa0814160 | 0.809177 | 2.152883e-50 | -8.615850e-47 |
| Msa0336630 | Msa0814230 | 0.839147 | 1.885862e-57 | -8.615850e-47 |
| Msa0336630 | Msa0822410 | 0.802822 | 4.675456e-49 | -8.615850e-47 |
| Msa0336630 | Msa0824860 | 0.816288 | 5.974104e-52 | -8.615850e-47 |
| Msa0336630 | Msa0834270 | 0.809208 | 2.119535e-50 | -8.615850e-47 |
| Msa0336630 | Msa0854840 | 0.806294 | 8.823338e-50 | -8.615850e-47 |
| Msa0336630 | Msa0861730 | 0.811038 | 8.548193e-51 | -8.615850e-47 |
| Msa0336630 | Msa0863840 | 0.815638 | 8.342162e-52 | -8.615850e-47 |
| Msa0336630 | Msa0863850 | 0.801769 | 7.701699e-49 | -8.615850e-47 |
| Msa0336630 | Msa0883640 | 0.843717 | 1.179803e-58 | -8.615850e-47 |
| Msa0336630 | Msa0893840 | 0.826560 | 2.536373e-54 | -8.615850e-47 |
| Msa0336630 | Msa0896920 | 0.815871 | 7.403654e-52 | -8.615850e-47 |
| Msa0336630 | Msa0910830 | 0.838224 | 3.264798e-57 | -8.615850e-47 |
| Msa0336630 | Msa0913550 | 0.848345 | 6.501811e-60 | -8.615850e-47 |
| Msa0336630 | Msa0941120 | 0.823638 | 1.243538e-53 | -8.615850e-47 |
| Msa0336630 | Msa0951150 | 0.839731 | 1.329377e-57 | -8.615850e-47 |
| Msa0336630 | Msa0960090 | 0.846204 | 2.516236e-59 | -8.615850e-47 |
| Msa0336630 | Msa0962290 | 0.806602 | 7.596128e-50 | -8.615850e-47 |
| Msa0336630 | Msa0971880 | 0.815988 | 6.971730e-52 | -8.615850e-47 |
| Msa0336630 | Msa0985700 | 0.843156 | 1.665915e-58 | -8.615850e-47 |
| Msa0336630 | Msa0987640 | 0.829064 | 6.345271e-55 | -8.615850e-47 |
| Msa0336630 | Msa0996980 | 0.801234 | 9.910706e-49 | -8.615850e-47 |
| Msa0336630 | Msa1003110 | 0.804026 | 2.631837e-49 | -8.615850e-47 |
| Msa0336630 | Msa1021620 | 0.836402 | 9.557260e-57 | -8.615850e-47 |
| Msa0336630 | Msa1022580 | 0.807745 | 4.350643e-50 | -8.615850e-47 |
| Msa0336630 | Msa1024350 | 0.820427 | 6.900031e-53 | -8.615850e-47 |
| Msa0336630 | Msa1026050 | 0.817006 | 4.124260e-52 | -8.615850e-47 |
| Msa0336630 | Msa1061670 | 0.849900 | 2.402751e-60 | -8.615850e-47 |
| Msa0336630 | Msa1076830 | 0.820295 | 7.395496e-53 | -8.615850e-47 |
| Msa0336630 | Msa1100560 | 0.800693 | 1.278426e-48 | -8.615850e-47 |
| Msa0336630 | Msa1106960 | 0.843814 | 1.111869e-58 | -8.615850e-47 |
| Msa0336630 | Msa1109880 | 0.830770 | 2.435300e-55 | -8.615850e-47 |
| Msa0336630 | Msa1109890 | 0.835539 | 1.581839e-56 | -8.615850e-47 |
| Msa0336630 | Msa1149020 | 0.813094 | 3.045127e-51 | -8.615850e-47 |
| Msa0336630 | Msa1155630 | 0.807659 | 4.537652e-50 | -8.615850e-47 |
| Msa0336630 | Msa1182800 | -0.806329 | 8.670696e-50 | -8.615850e-47 |
| Msa0336630 | Msa1216600 | 0.841511 | 4.546490e-58 | -8.615850e-47 |
| Msa0336630 | Msa1269050 | 0.840210 | 9.973243e-58 | -8.615850e-47 |
| Msa0336630 | Msa1275860 | 0.812469 | 4.174341e-51 | -8.615850e-47 |
| Msa0336630 | Msa1296870 | 0.829730 | 4.372261e-55 | -8.615850e-47 |
| Msa0336630 | Msa1300610 | 0.815917 | 7.229915e-52 | -8.615850e-47 |
| Msa0336630 | Msa1314710 | 0.813556 | 2.410638e-51 | -8.615850e-47 |
| Msa0336630 | Msa1323030 | 0.847678 | 9.931339e-60 | -8.615850e-47 |
| Msa0336630 | Msa1323120 | 0.831744 | 1.402919e-55 | -8.615850e-47 |
| Msa0336630 | Msa1323160 | 0.816100 | 6.580576e-52 | -8.615850e-47 |
| Msa0336630 | Msa1329740 | 0.815953 | 7.096316e-52 | -8.615850e-47 |
| Msa0336630 | Msa1343590 | 0.804041 | 2.613013e-49 | -8.615850e-47 |
| Msa0336630 | Msa1357490 | 0.852604 | 4.140925e-61 | -8.615850e-47 |
| Msa0336630 | Msa1357860 | 0.822752 | 2.002194e-53 | -8.615850e-47 |
| Msa0336630 | Msa1370930 | 0.824940 | 6.148419e-54 | -8.615850e-47 |
| Msa0336630 | Msa1376070 | 0.825144 | 5.500758e-54 | -8.615850e-47 |
| Msa0336630 | Msa1377520 | 0.816792 | 4.606043e-52 | -8.615850e-47 |
| Msa0336630 | Msa1378950 | 0.800874 | 1.174327e-48 | -8.615850e-47 |
| Msa0336630 | Msa1380490 | 0.820176 | 7.877266e-53 | -8.615850e-47 |
| Msa0336630 | Msa1386120 | 0.830351 | 3.084443e-55 | -8.615850e-47 |
| Msa0336630 | Msa1386260 | 0.802901 | 4.503227e-49 | -8.615850e-47 |
| Msa0336630 | Msa1396510 | 0.820308 | 7.344988e-53 | -8.615850e-47 |
| Msa0336630 | Msa1407670 | 0.836907 | 7.104308e-57 | -8.615850e-47 |
| Msa0336630 | Msa1411550 | 0.819363 | 1.207786e-52 | -8.615850e-47 |
| Msa0336630 | Msa1420020 | 0.865916 | 4.171731e-65 | -8.615850e-47 |
| Msa0336630 | Msa1421120 | 0.830702 | 2.530638e-55 | -8.615850e-47 |
| Msa0336630 | Msa1421130 | 0.804080 | 2.564533e-49 | -8.615850e-47 |
| Msa0336630 | Msa1426420 | 0.812343 | 4.447754e-51 | -8.615850e-47 |
| Msa0336630 | Msa1427670 | 0.830196 | 3.365533e-55 | -8.615850e-47 |
| Msa0336630 | Msa1445900 | 0.850016 | 2.230010e-60 | -8.615850e-47 |
| Msa0336630 | Msa1447790 | 0.817451 | 3.276188e-52 | -8.615850e-47 |
| Msa0336630 | Msa1449770 | 0.841661 | 4.150032e-58 | -8.615850e-47 |
| Msa0336630 | Msa1459610 | 0.832212 | 1.075239e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336630 | MtrunA17_Chr2g0323021 | 94.298 | 228 | 13 | 0 | 1 | 228 | 1 | 228 | 4.02e-149 | 414 |
| Msa0336630 | MtrunA17_Chr6g0481491 | 42.017 | 119 | 68 | 1 | 4 | 122 | 7 | 124 | 1.57e-34 | 122 |
| Msa0336630 | MtrunA17_Chr8g0335571 | 44.444 | 117 | 60 | 3 | 11 | 123 | 8 | 123 | 2.53e-30 | 111 |
| Msa0336630 | MtrunA17_Chr8g0335531 | 45.299 | 117 | 59 | 3 | 11 | 123 | 8 | 123 | 1.13e-29 | 109 |
| Msa0336630 | MtrunA17_Chr1g0196801 | 46.392 | 97 | 51 | 1 | 22 | 118 | 20 | 115 | 2.00e-29 | 108 |
| Msa0336630 | MtrunA17_Chr6g0459441 | 47.059 | 102 | 52 | 2 | 18 | 118 | 19 | 119 | 1.03e-27 | 103 |
| Msa0336630 | MtrunA17_Chr3g0132431 | 42.857 | 133 | 68 | 5 | 12 | 141 | 12 | 139 | 2.57e-27 | 103 |
| Msa0336630 | MtrunA17_Chr3g0132441 | 45.918 | 98 | 52 | 1 | 21 | 118 | 22 | 118 | 2.59e-25 | 98.2 |
| Msa0336630 | MtrunA17_Chr8g0380901 | 40.000 | 115 | 64 | 4 | 6 | 119 | 9 | 119 | 1.78e-24 | 94.0 |
| Msa0336630 | MtrunA17_Chr3g0132701 | 42.975 | 121 | 65 | 4 | 1 | 118 | 1 | 120 | 3.41e-24 | 95.9 |
| Msa0336630 | MtrunA17_Chr1g0205701 | 37.692 | 130 | 73 | 4 | 1 | 125 | 1 | 127 | 3.56e-24 | 95.1 |
| Msa0336630 | MtrunA17_Chr3g0132511 | 42.975 | 121 | 65 | 4 | 1 | 118 | 1 | 120 | 7.84e-24 | 95.1 |
| Msa0336630 | MtrunA17_Chr1g0150131 | 33.775 | 151 | 82 | 4 | 8 | 153 | 9 | 146 | 8.02e-24 | 94.0 |
| Msa0336630 | MtrunA17_Chr5g0394321 | 34.302 | 172 | 96 | 7 | 1 | 168 | 1 | 159 | 1.71e-23 | 93.2 |
| Msa0336630 | MtrunA17_Chr2g0289741 | 34.459 | 148 | 83 | 6 | 1 | 141 | 4 | 144 | 3.53e-23 | 92.0 |
| Msa0336630 | MtrunA17_Chr3g0132411 | 41.176 | 119 | 68 | 2 | 12 | 129 | 51 | 168 | 2.41e-22 | 89.7 |
| Msa0336630 | MtrunA17_Chr4g0064041 | 37.692 | 130 | 74 | 4 | 6 | 129 | 9 | 137 | 8.69e-21 | 89.4 |
| Msa0336630 | MtrunA17_Chr4g0064041 | 44.565 | 92 | 46 | 2 | 33 | 119 | 198 | 289 | 2.33e-19 | 85.5 |
| Msa0336630 | MtrunA17_Chr8g0360371 | 32.308 | 130 | 84 | 3 | 4 | 130 | 3 | 131 | 1.50e-20 | 87.8 |
| Msa0336630 | MtrunA17_Chr3g0136871 | 31.613 | 155 | 86 | 3 | 22 | 171 | 24 | 163 | 1.74e-20 | 85.1 |
| Msa0336630 | MtrunA17_Chr2g0324711 | 36.585 | 205 | 104 | 10 | 1 | 181 | 1 | 203 | 9.72e-20 | 86.3 |
| Msa0336630 | MtrunA17_Chr7g0253701 | 36.975 | 119 | 71 | 4 | 6 | 122 | 8 | 124 | 1.35e-19 | 82.4 |
| Msa0336630 | MtrunA17_Chr7g0253671 | 36.975 | 119 | 71 | 4 | 6 | 122 | 8 | 124 | 1.35e-19 | 82.4 |
| Msa0336630 | MtrunA17_Chr6g0453921 | 36.242 | 149 | 85 | 7 | 6 | 147 | 18 | 163 | 1.92e-19 | 82.4 |
| Msa0336630 | MtrunA17_Chr2g0331181 | 36.090 | 133 | 74 | 4 | 27 | 154 | 29 | 155 | 3.59e-19 | 82.0 |
| Msa0336630 | MtrunA17_Chr2g0301431 | 36.752 | 117 | 66 | 5 | 7 | 119 | 11 | 123 | 9.16e-19 | 79.0 |
| Msa0336630 | MtrunA17_Chr2g0306461 | 34.746 | 118 | 73 | 2 | 4 | 118 | 7 | 123 | 1.30e-18 | 80.9 |
| Msa0336630 | MtrunA17_Chr5g0440711 | 35.433 | 127 | 77 | 4 | 5 | 128 | 9 | 133 | 3.37e-18 | 78.2 |
| Msa0336630 | MtrunA17_Chr1g0177341 | 34.746 | 118 | 73 | 4 | 6 | 121 | 7 | 122 | 6.32e-18 | 77.8 |
| Msa0336630 | MtrunA17_Chr1g0177331 | 34.746 | 118 | 73 | 4 | 6 | 121 | 7 | 122 | 6.32e-18 | 77.8 |
| Msa0336630 | MtrunA17_Chr4g0073921 | 35.714 | 126 | 75 | 3 | 6 | 125 | 9 | 134 | 1.79e-17 | 79.0 |
| Msa0336630 | MtrunA17_Chr7g0253681 | 33.613 | 119 | 76 | 3 | 6 | 122 | 8 | 125 | 2.54e-17 | 76.3 |
| Msa0336630 | MtrunA17_Chr4g0040291 | 35.211 | 142 | 81 | 6 | 27 | 158 | 27 | 167 | 1.17e-16 | 75.1 |
| Msa0336630 | MtrunA17_Chr7g0253731 | 34.746 | 118 | 73 | 4 | 7 | 122 | 8 | 123 | 1.49e-16 | 74.3 |
| Msa0336630 | MtrunA17_Chr4g0041811 | 34.188 | 117 | 71 | 3 | 13 | 124 | 20 | 135 | 2.17e-16 | 75.1 |
| Msa0336630 | MtrunA17_Chr8g0387804 | 35.593 | 118 | 69 | 4 | 7 | 118 | 9 | 125 | 2.25e-16 | 72.8 |
| Msa0336630 | MtrunA17_Chr6g0453801 | 36.364 | 132 | 76 | 5 | 4 | 132 | 14 | 140 | 4.70e-16 | 73.2 |
| Msa0336630 | MtrunA17_Chr6g0458331 | 37.931 | 87 | 53 | 1 | 43 | 129 | 59 | 144 | 6.09e-16 | 72.8 |
| Msa0336630 | MtrunA17_Chr8g0385021 | 29.442 | 197 | 110 | 7 | 6 | 180 | 5 | 194 | 6.55e-16 | 74.7 |
| Msa0336630 | MtrunA17_Chr3g0144921 | 33.333 | 123 | 79 | 3 | 25 | 145 | 30 | 151 | 1.22e-15 | 72.0 |
| Msa0336630 | MtrunA17_Chr4g0073901 | 31.092 | 119 | 76 | 3 | 6 | 118 | 9 | 127 | 1.27e-15 | 72.4 |
| Msa0336630 | MtrunA17_Chr8g0385031 | 29.358 | 218 | 114 | 8 | 6 | 195 | 5 | 210 | 1.50e-15 | 73.9 |
| Msa0336630 | MtrunA17_Chr3g0125791 | 40.000 | 100 | 55 | 4 | 20 | 118 | 28 | 123 | 1.54e-15 | 70.5 |
| Msa0336630 | MtrunA17_Chr3g0125761 | 34.167 | 120 | 70 | 6 | 4 | 119 | 10 | 124 | 1.59e-15 | 70.5 |
| Msa0336630 | MtrunA17_Chr7g0253631 | 35.043 | 117 | 69 | 3 | 9 | 119 | 5 | 120 | 1.87e-15 | 73.2 |
| Msa0336630 | MtrunA17_Chr4g0062341 | 31.579 | 152 | 92 | 5 | 6 | 147 | 13 | 162 | 2.49e-15 | 71.6 |
| Msa0336630 | MtrunA17_Chr4g0062311 | 31.579 | 152 | 92 | 5 | 6 | 147 | 13 | 162 | 2.49e-15 | 71.6 |
| Msa0336630 | MtrunA17_Chr4g0039721 | 31.884 | 138 | 85 | 4 | 6 | 136 | 13 | 148 | 2.59e-15 | 71.2 |
| Msa0336630 | MtrunA17_Chr7g0253641 | 34.579 | 107 | 68 | 2 | 19 | 124 | 20 | 125 | 3.67e-15 | 72.0 |
| Msa0336630 | MtrunA17_Chr2g0324721 | 33.333 | 150 | 88 | 6 | 27 | 167 | 29 | 175 | 4.09e-15 | 71.2 |
| Msa0336630 | MtrunA17_Chr1g0188981 | 38.961 | 77 | 46 | 1 | 43 | 118 | 51 | 127 | 6.23e-15 | 70.5 |
| Msa0336630 | MtrunA17_Chr4g0064031 | 34.615 | 130 | 74 | 5 | 14 | 133 | 17 | 145 | 1.09e-14 | 69.3 |
| Msa0336630 | MtrunA17_Chr5g0440804 | 34.821 | 112 | 68 | 4 | 20 | 128 | 24 | 133 | 1.17e-14 | 69.3 |
| Msa0336630 | MtrunA17_Chr2g0317231 | 32.558 | 129 | 79 | 4 | 1 | 124 | 1 | 126 | 1.96e-14 | 72.0 |
| Msa0336630 | MtrunA17_Chr6g0483981 | 33.333 | 162 | 92 | 5 | 42 | 199 | 47 | 196 | 4.10e-14 | 70.9 |
| Msa0336630 | MtrunA17_Chr6g0453791 | 37.984 | 129 | 68 | 8 | 25 | 148 | 31 | 152 | 7.66e-14 | 67.4 |
| Msa0336630 | MtrunA17_Chr4g0033131 | 31.159 | 138 | 82 | 5 | 4 | 134 | 7 | 138 | 1.74e-13 | 66.2 |
| Msa0336630 | MtrunA17_Chr4g0033531 | 31.159 | 138 | 82 | 5 | 4 | 134 | 7 | 138 | 1.74e-13 | 66.2 |
| Msa0336630 | MtrunA17_Chr2g0319611 | 35.714 | 112 | 64 | 5 | 22 | 126 | 23 | 133 | 1.02e-12 | 65.9 |
| Msa0336630 | MtrunA17_Chr7g0253761 | 33.981 | 103 | 62 | 4 | 19 | 118 | 20 | 119 | 1.12e-12 | 64.3 |
| Msa0336630 | MtrunA17_Chr8g0385041 | 33.333 | 153 | 84 | 7 | 27 | 169 | 27 | 171 | 4.97e-12 | 64.3 |
| Msa0336630 | MtrunA17_Chr7g0256441 | 27.273 | 154 | 77 | 3 | 22 | 171 | 24 | 146 | 7.94e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336630 | AT2G32300.1 | 49.254 | 134 | 64 | 4 | 1 | 131 | 1 | 133 | 7.34e-43 | 145 |
| Msa0336630 | AT2G32300.2 | 49.254 | 134 | 64 | 4 | 1 | 131 | 31 | 163 | 3.09e-42 | 145 |
| Msa0336630 | AT3G27200.1 | 38.136 | 118 | 70 | 3 | 6 | 121 | 6 | 122 | 1.85e-29 | 108 |
| Msa0336630 | AT5G07475.1 | 36.842 | 152 | 86 | 3 | 8 | 150 | 13 | 163 | 4.30e-28 | 105 |
| Msa0336630 | AT3G60270.1 | 49.474 | 95 | 48 | 0 | 29 | 123 | 29 | 123 | 5.68e-28 | 105 |
| Msa0336630 | AT5G53870.2 | 34.225 | 187 | 106 | 5 | 7 | 177 | 12 | 197 | 5.03e-26 | 103 |
| Msa0336630 | AT5G53870.1 | 34.225 | 187 | 106 | 5 | 7 | 177 | 12 | 197 | 7.73e-26 | 103 |
| Msa0336630 | AT2G25060.1 | 38.849 | 139 | 74 | 5 | 15 | 142 | 21 | 159 | 3.55e-25 | 97.8 |
| Msa0336630 | AT2G31050.1 | 39.844 | 128 | 69 | 3 | 12 | 131 | 10 | 137 | 1.09e-24 | 97.1 |
| Msa0336630 | AT2G26720.1 | 37.903 | 124 | 70 | 2 | 10 | 126 | 8 | 131 | 3.76e-24 | 95.9 |
| Msa0336630 | AT4G30590.1 | 33.553 | 152 | 78 | 5 | 1 | 130 | 1 | 151 | 4.44e-23 | 92.8 |
| Msa0336630 | AT4G31840.1 | 35.659 | 129 | 77 | 3 | 27 | 150 | 29 | 156 | 1.94e-21 | 87.8 |
| Msa0336630 | AT3G60280.1 | 42.857 | 91 | 52 | 0 | 33 | 123 | 31 | 121 | 3.12e-21 | 88.6 |
| Msa0336630 | AT4G27520.1 | 35.542 | 166 | 88 | 6 | 1 | 162 | 6 | 156 | 8.37e-21 | 89.7 |
| Msa0336630 | AT1G72230.1 | 42.353 | 85 | 49 | 0 | 34 | 118 | 31 | 115 | 1.85e-20 | 85.5 |
| Msa0336630 | AT5G57920.3 | 32.117 | 137 | 87 | 3 | 26 | 156 | 56 | 192 | 3.45e-20 | 85.5 |
| Msa0336630 | AT5G57920.1 | 35.294 | 102 | 61 | 2 | 26 | 122 | 24 | 125 | 4.12e-20 | 84.7 |
| Msa0336630 | AT5G57920.2 | 32.117 | 137 | 87 | 3 | 26 | 156 | 23 | 159 | 8.49e-20 | 83.6 |
| Msa0336630 | AT5G26330.1 | 29.670 | 182 | 103 | 6 | 6 | 184 | 5 | 164 | 3.97e-19 | 82.0 |
| Msa0336630 | AT2G44790.1 | 40.217 | 92 | 53 | 1 | 34 | 123 | 36 | 127 | 7.99e-19 | 81.6 |
| Msa0336630 | AT3G17675.1 | 36.207 | 116 | 71 | 3 | 6 | 119 | 12 | 126 | 1.66e-18 | 79.0 |
| Msa0336630 | AT5G25090.1 | 33.913 | 115 | 71 | 2 | 15 | 124 | 16 | 130 | 2.88e-18 | 79.7 |
| Msa0336630 | AT4G12880.1 | 39.000 | 100 | 56 | 4 | 22 | 118 | 26 | 123 | 4.81e-18 | 78.2 |
| Msa0336630 | AT2G23990.1 | 35.897 | 117 | 69 | 3 | 27 | 137 | 29 | 145 | 1.49e-17 | 78.6 |
| Msa0336630 | AT1G22480.1 | 45.882 | 85 | 46 | 0 | 34 | 118 | 27 | 111 | 7.21e-17 | 75.9 |
| Msa0336630 | AT3G20570.1 | 35.088 | 114 | 69 | 3 | 15 | 124 | 20 | 132 | 1.19e-16 | 75.9 |
| Msa0336630 | AT1G64640.1 | 37.255 | 102 | 57 | 3 | 43 | 141 | 53 | 150 | 5.49e-16 | 73.9 |
| Msa0336630 | AT4G28365.1 | 30.814 | 172 | 109 | 6 | 3 | 167 | 4 | 172 | 6.00e-16 | 73.9 |
| Msa0336630 | AT1G48940.1 | 34.351 | 131 | 77 | 4 | 1 | 124 | 1 | 129 | 2.15e-15 | 72.0 |
| Msa0336630 | AT2G27035.1 | 30.769 | 130 | 85 | 5 | 4 | 130 | 6 | 133 | 3.38e-14 | 68.6 |
| Msa0336630 | AT3G18590.1 | 32.258 | 124 | 71 | 4 | 9 | 121 | 6 | 127 | 2.16e-13 | 66.6 |
| Msa0336630 | AT2G23990.2 | 30.882 | 136 | 69 | 4 | 27 | 137 | 29 | 164 | 3.22e-13 | 67.0 |
| Msa0336630 | AT4G32490.1 | 28.144 | 167 | 118 | 2 | 3 | 167 | 9 | 175 | 4.63e-13 | 66.6 |
| Msa0336630 | AT5G14345.1 | 34.653 | 101 | 63 | 2 | 35 | 133 | 30 | 129 | 5.19e-13 | 64.7 |
| Msa0336630 | AT5G20230.1 | 37.349 | 83 | 51 | 1 | 42 | 123 | 44 | 126 | 2.36e-12 | 63.9 |
| Msa0336630 | AT1G79800.1 | 31.250 | 96 | 65 | 1 | 43 | 138 | 56 | 150 | 5.55e-12 | 62.8 |
| Msa0336630 | AT4G12880.2 | 38.889 | 72 | 40 | 3 | 49 | 118 | 16 | 85 | 8.84e-12 | 60.5 |
| Msa0336630 | AT2G02850.1 | 34.066 | 91 | 56 | 3 | 29 | 118 | 39 | 126 | 2.34e-11 | 59.7 |
Find 62 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAGGACTTGGCGCTTC+AGG | 0.262695 | 2_4:-56041052 | None:intergenic |
| TGTGGCTATGCTAATCAAAT+TGG | 0.271323 | 2_4:+56040427 | Msa0336630:CDS |
| CGATTTCAACCTTCATTCCT+TGG | 0.319611 | 2_4:-56040901 | None:intergenic |
| CCATCATTGTAGGATTGAAT+TGG | 0.330428 | 2_4:-56040809 | None:intergenic |
| CATCATGGTTTGGTGGATAC+TGG | 0.344644 | 2_4:-56040739 | None:intergenic |
| GTGTTTATGACCTTCTTCTA+AGG | 0.345543 | 2_4:+56041238 | Msa0336630:CDS |
| ATTGAATTGGATTTGTTTGC+TGG | 0.369249 | 2_4:-56040796 | None:intergenic |
| TTTGTATCCCACCCACCATT+TGG | 0.382646 | 2_4:-56040479 | None:intergenic |
| TACTTCATTTGTGGAACAAT+AGG | 0.386246 | 2_4:+56040869 | Msa0336630:CDS |
| GGCTTGTAGATTTCCTTTCT+CGG | 0.389537 | 2_4:-56041185 | None:intergenic |
| TAAACTCAACACTATTGAAA+TGG | 0.395203 | 2_4:-56041209 | None:intergenic |
| TGTCTCCCACTGAAAATTGC+TGG | 0.409535 | 2_4:-56040529 | None:intergenic |
| ACCATTCCTCTCACATCAAC+AGG | 0.409662 | 2_4:+56040839 | Msa0336630:CDS |
| AACTCAGTGGATGGAATCAT+TGG | 0.412975 | 2_4:-56041106 | None:intergenic |
| GGTTGTGGCACCATCATTGT+AGG | 0.418651 | 2_4:-56040819 | None:intergenic |
| GGCAAAAGATACTTCATTTG+TGG | 0.426964 | 2_4:+56040860 | Msa0336630:CDS |
| CAAACTCAAACCTTCAATCA+TGG | 0.439667 | 2_4:+56040498 | Msa0336630:CDS |
| CACATTGTTGGAGGACCAAA+TGG | 0.441037 | 2_4:+56040464 | Msa0336630:CDS |
| TCGGCCTCATCGACCGAGAA+AGG | 0.446703 | 2_4:+56041172 | Msa0336630:CDS |
| ATTGGAGAGTCTGCTATTGA+AGG | 0.471110 | 2_4:-56040971 | None:intergenic |
| ACTTCAACCACATCATGGTT+TGG | 0.472827 | 2_4:-56040749 | None:intergenic |
| TGTGTTTCAAACAAAGGACT+TGG | 0.474320 | 2_4:-56041061 | None:intergenic |
| ATTGAAGGTTCTGCTGCTAC+TGG | 0.475658 | 2_4:-56040956 | None:intergenic |
| TCCTGTGAATGTTGTGCTAT+AGG | 0.480835 | 2_4:-56041145 | None:intergenic |
| TCCTATAGCACAACATTCAC+AGG | 0.486894 | 2_4:+56041144 | Msa0336630:CDS |
| GAGGGAATGATGGAAATCAT+TGG | 0.490266 | 2_4:-56040989 | None:intergenic |
| CCAATTCAATCCTACAATGA+TGG | 0.493235 | 2_4:+56040809 | Msa0336630:CDS |
| AATTGGATTTGTTTGCTGGC+AGG | 0.504490 | 2_4:-56040792 | None:intergenic |
| ATGGCTACAAATCACATTGT+TGG | 0.506134 | 2_4:+56040452 | Msa0336630:CDS |
| GTCTCCCACTGAAAATTGCT+GGG | 0.517061 | 2_4:-56040528 | None:intergenic |
| TTGTAACTTCAACCACATCA+TGG | 0.532734 | 2_4:-56040754 | None:intergenic |
| ACAATAGGACATTGCAGCCA+AGG | 0.536238 | 2_4:+56040884 | Msa0336630:CDS |
| TCTGCTGCTACTGGTGAGGC+AGG | 0.537334 | 2_4:-56040947 | None:intergenic |
| TCTGCTTGTGTTTCAAACAA+AGG | 0.541592 | 2_4:-56041067 | None:intergenic |
| GCCTGTTGATGTGAGAGGAA+TGG | 0.541643 | 2_4:-56040840 | None:intergenic |
| AACAATGTGATTTGTAGCCA+TGG | 0.542196 | 2_4:-56040450 | None:intergenic |
| ACATTGCAGCCAAGGAATGA+AGG | 0.543328 | 2_4:+56040892 | Msa0336630:CDS |
| GGGAAGATGCCCATGATTGA+AGG | 0.551803 | 2_4:-56040508 | None:intergenic |
| AAACTCAAACCTTCAATCAT+GGG | 0.565295 | 2_4:+56040499 | Msa0336630:CDS |
| TTGGAGGACCAAATGGTGGG+TGG | 0.577194 | 2_4:+56040471 | Msa0336630:CDS |
| GATGAAACAGTAGATTCTGC+AGG | 0.577330 | 2_4:-56041019 | None:intergenic |
| ATTTCCTTTCTCGGTCGATG+AGG | 0.581260 | 2_4:-56041176 | None:intergenic |
| GGAGCTAGAAACTCAGTGGA+TGG | 0.587416 | 2_4:-56041115 | None:intergenic |
| AGATTCTGCAGGTGCTGCAG+AGG | 0.587849 | 2_4:-56041008 | None:intergenic |
| TGTTGTGCTATAGGAGAGGA+AGG | 0.587966 | 2_4:-56041136 | None:intergenic |
| ACAACATTCACAGGATGTAT+CGG | 0.591172 | 2_4:+56041153 | Msa0336630:CDS |
| TGGAGGACCAAATGGTGGGT+GGG | 0.594340 | 2_4:+56040472 | Msa0336630:CDS |
| TATGCTAATCAAATTGGCCA+TGG | 0.594784 | 2_4:+56040433 | Msa0336630:CDS |
| AGGTGCTGCAGAGGGAATGA+TGG | 0.596865 | 2_4:-56040999 | None:intergenic |
| GCTACAAATCACATTGTTGG+AGG | 0.598903 | 2_4:+56040455 | Msa0336630:CDS |
| GGAATCATTGGAGAGAGTGT+AGG | 0.602725 | 2_4:-56041094 | None:intergenic |
| TCAACCACATCATGGTTTGG+TGG | 0.604647 | 2_4:-56040746 | None:intergenic |
| ACTCAACACTATTGAAATGG+AGG | 0.606412 | 2_4:-56041206 | None:intergenic |
| GATTCTGCAGGTGCTGCAGA+GGG | 0.609354 | 2_4:-56041007 | None:intergenic |
| AATAGTGTTGAGTTTAGTAG+CGG | 0.615409 | 2_4:+56041216 | Msa0336630:CDS |
| AGGTTCTGCTGCTACTGGTG+AGG | 0.629522 | 2_4:-56040951 | None:intergenic |
| GGAAGGAGCTAGAAACTCAG+TGG | 0.633216 | 2_4:-56041119 | None:intergenic |
| TGATGTGAGAGGAATGGTTG+TGG | 0.649255 | 2_4:-56040834 | None:intergenic |
| ATTGTTGGAGGACCAAATGG+TGG | 0.666142 | 2_4:+56040467 | Msa0336630:CDS |
| GTATCCACCAAACCATGATG+TGG | 0.674142 | 2_4:+56040742 | Msa0336630:CDS |
| TTGTTGGAGGACCAAATGGT+GGG | 0.681492 | 2_4:+56040468 | Msa0336630:CDS |
| TGAATGTTGTGCTATAGGAG+AGG | 0.726891 | 2_4:-56041140 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATTAAAGTTAATCGAA+TGG | - | chr2_4:56040651-56040670 | None:intergenic | 20.0% |
| !! | TCAAATTAAAGTTAATCGAA+TGG | - | chr2_4:56040651-56040670 | None:intergenic | 20.0% |
| !!! | CATTCTAAGAATAACTTTTG+TGG | + | chr2_4:56040409-56040428 | Msa0336630:CDS | 25.0% |
| ! | ATATAGTAAGCGCTTAATTA+AGG | + | chr2_4:56040618-56040637 | Msa0336630:intron | 25.0% |
| ! | TAAACTCAACACTATTGAAA+TGG | - | chr2_4:56041212-56041231 | None:intergenic | 25.0% |
| !!! | CATTCTAAGAATAACTTTTG+TGG | + | chr2_4:56040409-56040428 | Msa0336630:CDS | 25.0% |
| ! | ATATAGTAAGCGCTTAATTA+AGG | + | chr2_4:56040618-56040637 | Msa0336630:intron | 25.0% |
| ! | TAAACTCAACACTATTGAAA+TGG | - | chr2_4:56041212-56041231 | None:intergenic | 25.0% |
| AAACTCAAACCTTCAATCAT+GGG | + | chr2_4:56040499-56040518 | Msa0336630:CDS | 30.0% | |
| ! | ATTGAATTGGATTTGTTTGC+TGG | - | chr2_4:56040799-56040818 | None:intergenic | 30.0% |
| TACTTCATTTGTGGAACAAT+AGG | + | chr2_4:56040869-56040888 | Msa0336630:CDS | 30.0% | |
| ! | AATAGTGTTGAGTTTAGTAG+CGG | + | chr2_4:56041216-56041235 | Msa0336630:CDS | 30.0% |
| AAACTCAAACCTTCAATCAT+GGG | + | chr2_4:56040499-56040518 | Msa0336630:CDS | 30.0% | |
| ! | ATTGAATTGGATTTGTTTGC+TGG | - | chr2_4:56040799-56040818 | None:intergenic | 30.0% |
| TACTTCATTTGTGGAACAAT+AGG | + | chr2_4:56040869-56040888 | Msa0336630:CDS | 30.0% | |
| ! | AATAGTGTTGAGTTTAGTAG+CGG | + | chr2_4:56041216-56041235 | Msa0336630:CDS | 30.0% |
| TGTGGCTATGCTAATCAAAT+TGG | + | chr2_4:56040427-56040446 | Msa0336630:CDS | 35.0% | |
| TATGCTAATCAAATTGGCCA+TGG | + | chr2_4:56040433-56040452 | Msa0336630:CDS | 35.0% | |
| ! | AACAATGTGATTTGTAGCCA+TGG | - | chr2_4:56040453-56040472 | None:intergenic | 35.0% |
| ATGGCTACAAATCACATTGT+TGG | + | chr2_4:56040452-56040471 | Msa0336630:CDS | 35.0% | |
| CAAACTCAAACCTTCAATCA+TGG | + | chr2_4:56040498-56040517 | Msa0336630:CDS | 35.0% | |
| TTGTAACTTCAACCACATCA+TGG | - | chr2_4:56040757-56040776 | None:intergenic | 35.0% | |
| CCATCATTGTAGGATTGAAT+TGG | - | chr2_4:56040812-56040831 | None:intergenic | 35.0% | |
| CCAATTCAATCCTACAATGA+TGG | + | chr2_4:56040809-56040828 | Msa0336630:CDS | 35.0% | |
| GGCAAAAGATACTTCATTTG+TGG | + | chr2_4:56040860-56040879 | Msa0336630:CDS | 35.0% | |
| TGTGTTTCAAACAAAGGACT+TGG | - | chr2_4:56041064-56041083 | None:intergenic | 35.0% | |
| TCTGCTTGTGTTTCAAACAA+AGG | - | chr2_4:56041070-56041089 | None:intergenic | 35.0% | |
| ACAACATTCACAGGATGTAT+CGG | + | chr2_4:56041153-56041172 | Msa0336630:CDS | 35.0% | |
| ACTCAACACTATTGAAATGG+AGG | - | chr2_4:56041209-56041228 | None:intergenic | 35.0% | |
| TGTGGCTATGCTAATCAAAT+TGG | + | chr2_4:56040427-56040446 | Msa0336630:CDS | 35.0% | |
| TATGCTAATCAAATTGGCCA+TGG | + | chr2_4:56040433-56040452 | Msa0336630:CDS | 35.0% | |
| ! | AACAATGTGATTTGTAGCCA+TGG | - | chr2_4:56040453-56040472 | None:intergenic | 35.0% |
| ATGGCTACAAATCACATTGT+TGG | + | chr2_4:56040452-56040471 | Msa0336630:CDS | 35.0% | |
| CAAACTCAAACCTTCAATCA+TGG | + | chr2_4:56040498-56040517 | Msa0336630:CDS | 35.0% | |
| TTGTAACTTCAACCACATCA+TGG | - | chr2_4:56040757-56040776 | None:intergenic | 35.0% | |
| CCATCATTGTAGGATTGAAT+TGG | - | chr2_4:56040812-56040831 | None:intergenic | 35.0% | |
| CCAATTCAATCCTACAATGA+TGG | + | chr2_4:56040809-56040828 | Msa0336630:CDS | 35.0% | |
| GGCAAAAGATACTTCATTTG+TGG | + | chr2_4:56040860-56040879 | Msa0336630:CDS | 35.0% | |
| TGTGTTTCAAACAAAGGACT+TGG | - | chr2_4:56041064-56041083 | None:intergenic | 35.0% | |
| TCTGCTTGTGTTTCAAACAA+AGG | - | chr2_4:56041070-56041089 | None:intergenic | 35.0% | |
| ACAACATTCACAGGATGTAT+CGG | + | chr2_4:56041153-56041172 | Msa0336630:CDS | 35.0% | |
| ACTCAACACTATTGAAATGG+AGG | - | chr2_4:56041209-56041228 | None:intergenic | 35.0% | |
| GCTACAAATCACATTGTTGG+AGG | + | chr2_4:56040455-56040474 | Msa0336630:CDS | 40.0% | |
| ! | ATCTTCCCAGCAATTTTCAG+TGG | + | chr2_4:56040523-56040542 | Msa0336630:CDS | 40.0% |
| ! | TCTTCCCAGCAATTTTCAGT+GGG | + | chr2_4:56040524-56040543 | Msa0336630:CDS | 40.0% |
| ACTTCAACCACATCATGGTT+TGG | - | chr2_4:56040752-56040771 | None:intergenic | 40.0% | |
| ! | AATTGGATTTGTTTGCTGGC+AGG | - | chr2_4:56040795-56040814 | None:intergenic | 40.0% |
| CGATTTCAACCTTCATTCCT+TGG | - | chr2_4:56040904-56040923 | None:intergenic | 40.0% | |
| ATTGGAGAGTCTGCTATTGA+AGG | - | chr2_4:56040974-56040993 | None:intergenic | 40.0% | |
| ! | GAGGGAATGATGGAAATCAT+TGG | - | chr2_4:56040992-56041011 | None:intergenic | 40.0% |
| GATGAAACAGTAGATTCTGC+AGG | - | chr2_4:56041022-56041041 | None:intergenic | 40.0% | |
| AACTCAGTGGATGGAATCAT+TGG | - | chr2_4:56041109-56041128 | None:intergenic | 40.0% | |
| TGAATGTTGTGCTATAGGAG+AGG | - | chr2_4:56041143-56041162 | None:intergenic | 40.0% | |
| TCCTATAGCACAACATTCAC+AGG | + | chr2_4:56041144-56041163 | Msa0336630:CDS | 40.0% | |
| TCCTGTGAATGTTGTGCTAT+AGG | - | chr2_4:56041148-56041167 | None:intergenic | 40.0% | |
| GGCTTGTAGATTTCCTTTCT+CGG | - | chr2_4:56041188-56041207 | None:intergenic | 40.0% | |
| GCTACAAATCACATTGTTGG+AGG | + | chr2_4:56040455-56040474 | Msa0336630:CDS | 40.0% | |
| ! | ATCTTCCCAGCAATTTTCAG+TGG | + | chr2_4:56040523-56040542 | Msa0336630:CDS | 40.0% |
| ! | TCTTCCCAGCAATTTTCAGT+GGG | + | chr2_4:56040524-56040543 | Msa0336630:CDS | 40.0% |
| ACTTCAACCACATCATGGTT+TGG | - | chr2_4:56040752-56040771 | None:intergenic | 40.0% | |
| ! | AATTGGATTTGTTTGCTGGC+AGG | - | chr2_4:56040795-56040814 | None:intergenic | 40.0% |
| CGATTTCAACCTTCATTCCT+TGG | - | chr2_4:56040904-56040923 | None:intergenic | 40.0% | |
| ATTGGAGAGTCTGCTATTGA+AGG | - | chr2_4:56040974-56040993 | None:intergenic | 40.0% | |
| ! | GAGGGAATGATGGAAATCAT+TGG | - | chr2_4:56040992-56041011 | None:intergenic | 40.0% |
| GATGAAACAGTAGATTCTGC+AGG | - | chr2_4:56041022-56041041 | None:intergenic | 40.0% | |
| AACTCAGTGGATGGAATCAT+TGG | - | chr2_4:56041109-56041128 | None:intergenic | 40.0% | |
| TGAATGTTGTGCTATAGGAG+AGG | - | chr2_4:56041143-56041162 | None:intergenic | 40.0% | |
| TCCTATAGCACAACATTCAC+AGG | + | chr2_4:56041144-56041163 | Msa0336630:CDS | 40.0% | |
| TCCTGTGAATGTTGTGCTAT+AGG | - | chr2_4:56041148-56041167 | None:intergenic | 40.0% | |
| GGCTTGTAGATTTCCTTTCT+CGG | - | chr2_4:56041188-56041207 | None:intergenic | 40.0% | |
| CACATTGTTGGAGGACCAAA+TGG | + | chr2_4:56040464-56040483 | Msa0336630:CDS | 45.0% | |
| ATTGTTGGAGGACCAAATGG+TGG | + | chr2_4:56040467-56040486 | Msa0336630:CDS | 45.0% | |
| TTGTTGGAGGACCAAATGGT+GGG | + | chr2_4:56040468-56040487 | Msa0336630:CDS | 45.0% | |
| TTTGTATCCCACCCACCATT+TGG | - | chr2_4:56040482-56040501 | None:intergenic | 45.0% | |
| GTCTCCCACTGAAAATTGCT+GGG | - | chr2_4:56040531-56040550 | None:intergenic | 45.0% | |
| TGTCTCCCACTGAAAATTGC+TGG | - | chr2_4:56040532-56040551 | None:intergenic | 45.0% | |
| !! | CATCATGGTTTGGTGGATAC+TGG | - | chr2_4:56040742-56040761 | None:intergenic | 45.0% |
| GTATCCACCAAACCATGATG+TGG | + | chr2_4:56040742-56040761 | Msa0336630:CDS | 45.0% | |
| ! | TCAACCACATCATGGTTTGG+TGG | - | chr2_4:56040749-56040768 | None:intergenic | 45.0% |
| TGATGTGAGAGGAATGGTTG+TGG | - | chr2_4:56040837-56040856 | None:intergenic | 45.0% | |
| ACCATTCCTCTCACATCAAC+AGG | + | chr2_4:56040839-56040858 | Msa0336630:CDS | 45.0% | |
| ! | CTTTTGCCTGTTGATGTGAG+AGG | - | chr2_4:56040848-56040867 | None:intergenic | 45.0% |
| ACAATAGGACATTGCAGCCA+AGG | + | chr2_4:56040884-56040903 | Msa0336630:CDS | 45.0% | |
| ACATTGCAGCCAAGGAATGA+AGG | + | chr2_4:56040892-56040911 | Msa0336630:CDS | 45.0% | |
| ATTGAAGGTTCTGCTGCTAC+TGG | - | chr2_4:56040959-56040978 | None:intergenic | 45.0% | |
| ! | GGAATCATTGGAGAGAGTGT+AGG | - | chr2_4:56041097-56041116 | None:intergenic | 45.0% |
| TGTTGTGCTATAGGAGAGGA+AGG | - | chr2_4:56041139-56041158 | None:intergenic | 45.0% | |
| ATTTCCTTTCTCGGTCGATG+AGG | - | chr2_4:56041179-56041198 | None:intergenic | 45.0% | |
| CACATTGTTGGAGGACCAAA+TGG | + | chr2_4:56040464-56040483 | Msa0336630:CDS | 45.0% | |
| ATTGTTGGAGGACCAAATGG+TGG | + | chr2_4:56040467-56040486 | Msa0336630:CDS | 45.0% | |
| TTGTTGGAGGACCAAATGGT+GGG | + | chr2_4:56040468-56040487 | Msa0336630:CDS | 45.0% | |
| TTTGTATCCCACCCACCATT+TGG | - | chr2_4:56040482-56040501 | None:intergenic | 45.0% | |
| GTCTCCCACTGAAAATTGCT+GGG | - | chr2_4:56040531-56040550 | None:intergenic | 45.0% | |
| TGTCTCCCACTGAAAATTGC+TGG | - | chr2_4:56040532-56040551 | None:intergenic | 45.0% | |
| !! | CATCATGGTTTGGTGGATAC+TGG | - | chr2_4:56040742-56040761 | None:intergenic | 45.0% |
| GTATCCACCAAACCATGATG+TGG | + | chr2_4:56040742-56040761 | Msa0336630:CDS | 45.0% | |
| ! | TCAACCACATCATGGTTTGG+TGG | - | chr2_4:56040749-56040768 | None:intergenic | 45.0% |
| TGATGTGAGAGGAATGGTTG+TGG | - | chr2_4:56040837-56040856 | None:intergenic | 45.0% | |
| ACCATTCCTCTCACATCAAC+AGG | + | chr2_4:56040839-56040858 | Msa0336630:CDS | 45.0% | |
| ! | CTTTTGCCTGTTGATGTGAG+AGG | - | chr2_4:56040848-56040867 | None:intergenic | 45.0% |
| ACAATAGGACATTGCAGCCA+AGG | + | chr2_4:56040884-56040903 | Msa0336630:CDS | 45.0% | |
| ACATTGCAGCCAAGGAATGA+AGG | + | chr2_4:56040892-56040911 | Msa0336630:CDS | 45.0% | |
| ATTGAAGGTTCTGCTGCTAC+TGG | - | chr2_4:56040959-56040978 | None:intergenic | 45.0% | |
| ! | GGAATCATTGGAGAGAGTGT+AGG | - | chr2_4:56041097-56041116 | None:intergenic | 45.0% |
| TGTTGTGCTATAGGAGAGGA+AGG | - | chr2_4:56041139-56041158 | None:intergenic | 45.0% | |
| ATTTCCTTTCTCGGTCGATG+AGG | - | chr2_4:56041179-56041198 | None:intergenic | 45.0% | |
| GGGAAGATGCCCATGATTGA+AGG | - | chr2_4:56040511-56040530 | None:intergenic | 50.0% | |
| GGTTGTGGCACCATCATTGT+AGG | - | chr2_4:56040822-56040841 | None:intergenic | 50.0% | |
| GCCTGTTGATGTGAGAGGAA+TGG | - | chr2_4:56040843-56040862 | None:intergenic | 50.0% | |
| AACAAAGGACTTGGCGCTTC+AGG | - | chr2_4:56041055-56041074 | None:intergenic | 50.0% | |
| GGAGCTAGAAACTCAGTGGA+TGG | - | chr2_4:56041118-56041137 | None:intergenic | 50.0% | |
| GGAAGGAGCTAGAAACTCAG+TGG | - | chr2_4:56041122-56041141 | None:intergenic | 50.0% | |
| GGGAAGATGCCCATGATTGA+AGG | - | chr2_4:56040511-56040530 | None:intergenic | 50.0% | |
| GGTTGTGGCACCATCATTGT+AGG | - | chr2_4:56040822-56040841 | None:intergenic | 50.0% | |
| GCCTGTTGATGTGAGAGGAA+TGG | - | chr2_4:56040843-56040862 | None:intergenic | 50.0% | |
| AACAAAGGACTTGGCGCTTC+AGG | - | chr2_4:56041055-56041074 | None:intergenic | 50.0% | |
| GGAGCTAGAAACTCAGTGGA+TGG | - | chr2_4:56041118-56041137 | None:intergenic | 50.0% | |
| GGAAGGAGCTAGAAACTCAG+TGG | - | chr2_4:56041122-56041141 | None:intergenic | 50.0% | |
| ! | TTGGAGGACCAAATGGTGGG+TGG | + | chr2_4:56040471-56040490 | Msa0336630:CDS | 55.0% |
| !! | TGGAGGACCAAATGGTGGGT+GGG | + | chr2_4:56040472-56040491 | Msa0336630:CDS | 55.0% |
| AGGTTCTGCTGCTACTGGTG+AGG | - | chr2_4:56040954-56040973 | None:intergenic | 55.0% | |
| ! | AGGTGCTGCAGAGGGAATGA+TGG | - | chr2_4:56041002-56041021 | None:intergenic | 55.0% |
| ! | GATTCTGCAGGTGCTGCAGA+GGG | - | chr2_4:56041010-56041029 | None:intergenic | 55.0% |
| ! | AGATTCTGCAGGTGCTGCAG+AGG | - | chr2_4:56041011-56041030 | None:intergenic | 55.0% |
| ! | TTGGAGGACCAAATGGTGGG+TGG | + | chr2_4:56040471-56040490 | Msa0336630:CDS | 55.0% |
| !! | TGGAGGACCAAATGGTGGGT+GGG | + | chr2_4:56040472-56040491 | Msa0336630:CDS | 55.0% |
| AGGTTCTGCTGCTACTGGTG+AGG | - | chr2_4:56040954-56040973 | None:intergenic | 55.0% | |
| ! | AGGTGCTGCAGAGGGAATGA+TGG | - | chr2_4:56041002-56041021 | None:intergenic | 55.0% |
| ! | GATTCTGCAGGTGCTGCAGA+GGG | - | chr2_4:56041010-56041029 | None:intergenic | 55.0% |
| ! | AGATTCTGCAGGTGCTGCAG+AGG | - | chr2_4:56041011-56041030 | None:intergenic | 55.0% |
| TCTGCTGCTACTGGTGAGGC+AGG | - | chr2_4:56040950-56040969 | None:intergenic | 60.0% | |
| TCGGCCTCATCGACCGAGAA+AGG | + | chr2_4:56041172-56041191 | Msa0336630:CDS | 60.0% | |
| TCTGCTGCTACTGGTGAGGC+AGG | - | chr2_4:56040950-56040969 | None:intergenic | 60.0% | |
| TCGGCCTCATCGACCGAGAA+AGG | + | chr2_4:56041172-56041191 | Msa0336630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 56040392 | 56041258 | 56040392 | ID=Msa0336630;Name=Msa0336630 |
| chr2_4 | mRNA | 56040392 | 56041258 | 56040392 | ID=Msa0336630-mRNA-1;Parent=Msa0336630;Name=Msa0336630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|229 |
| chr2_4 | exon | 56040392 | 56040557 | 56040392 | ID=Msa0336630-mRNA-1:exon:17062;Parent=Msa0336630-mRNA-1 |
| chr2_4 | exon | 56040735 | 56041258 | 56040735 | ID=Msa0336630-mRNA-1:exon:17063;Parent=Msa0336630-mRNA-1 |
| chr2_4 | CDS | 56040392 | 56040557 | 56040392 | ID=Msa0336630-mRNA-1:cds;Parent=Msa0336630-mRNA-1 |
| chr2_4 | CDS | 56040735 | 56041258 | 56040735 | ID=Msa0336630-mRNA-1:cds;Parent=Msa0336630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
