AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0791300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791300 MtrunA17_Chr3g0083901 97.452 314 8 0 1 314 1 314 0.0 627
Msa0791300 MtrunA17_Chr8g0352621 78.344 314 67 1 1 314 1 313 0.0 524
Msa0791300 MtrunA17_Chr8g0352611 71.975 314 87 1 1 314 1 313 6.74e-166 463
Msa0791300 MtrunA17_Chr3g0083921 67.834 314 101 0 1 314 1 314 3.98e-161 451
Msa0791300 MtrunA17_Chr8g0352591 70.192 312 82 1 1 312 1 301 9.25e-161 450
Msa0791300 MtrunA17_Chr2g0293441 47.588 311 163 0 1 311 1 311 2.39e-109 320
Msa0791300 MtrunA17_Chr5g0425971 46.349 315 168 1 1 314 1 315 3.40e-99 294
Msa0791300 MtrunA17_Chr8g0382281 47.604 313 163 1 1 312 1 313 4.00e-97 289
Msa0791300 MtrunA17_Chr8g0352571 40.984 305 177 1 11 312 12 316 1.06e-75 234
Msa0791300 MtrunA17_Chr8g0393281 38.535 314 190 3 1 312 1 313 2.04e-71 223
Msa0791300 MtrunA17_Chr6g0479411 38.608 316 191 3 1 314 28 342 1.87e-69 219
Msa0791300 MtrunA17_Chr6g0479421 38.924 316 190 3 1 314 1 315 9.04e-68 214
Msa0791300 MtrunA17_Chr1g0162071 35.463 313 199 3 1 311 1 312 4.08e-64 204
Msa0791300 MtrunA17_Chr1g0210981 36.508 315 197 3 1 313 1 314 1.54e-62 201
Msa0791300 MtrunA17_Chr6g0479391 35.667 300 191 2 15 313 16 314 5.78e-57 186
Msa0791300 MtrunA17_Chr8g0352581 36.709 316 175 6 14 312 5 312 5.95e-56 184
Msa0791300 MtrunA17_Chr6g0461141 27.083 288 202 4 33 312 23 310 3.93e-31 119
Msa0791300 MtrunA17_Chr3g0084011 68.493 73 23 0 1 73 1 73 1.09e-28 106
Msa0791300 MtrunA17_Chr3g0084021 72.308 65 18 0 144 208 5 69 2.21e-27 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791300 AT5G12380.1 53.376 311 145 0 1 311 1 311 2.80e-122 353
Msa0791300 AT1G35720.1 50.633 316 154 2 1 314 1 316 4.25e-109 320
Msa0791300 AT5G10230.1 49.206 315 158 2 1 314 1 314 8.08e-104 306
Msa0791300 AT5G10220.1 48.896 317 158 3 1 314 1 316 2.89e-103 305
Msa0791300 AT5G65020.1 49.051 316 159 2 1 314 1 316 4.33e-103 305
Msa0791300 AT5G65020.2 49.485 291 146 1 25 314 11 301 1.86e-97 290
Msa0791300 AT2G38760.1 41.195 318 180 3 1 311 1 318 3.62e-81 249
Msa0791300 AT1G68090.1 36.508 315 198 2 1 313 1 315 1.10e-65 209
Msa0791300 AT2G38750.2 35.390 308 174 7 25 314 2 302 3.07e-49 166
Msa0791300 AT2G38750.1 35.390 308 174 7 25 314 19 319 3.89e-49 166
Msa0791300 AT1G68090.2 35.200 250 160 2 1 248 1 250 2.78e-47 159

Find 65 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGCCATTATCGCAATTT+TGG 0.073058 5_3:+2221105 Msa0791300:CDS
CGCAATGCGATCAAGAAATT+TGG 0.104840 5_3:+2222781 Msa0791300:CDS
GCCTCAGTTTGTGCCAATTT+TGG 0.143057 5_3:-2221921 None:intergenic
GAAGTTCATCCTCACTCTTT+TGG 0.245293 5_3:+2222942 Msa0791300:CDS
TTGGATTAGTGAGCTCATTT+AGG 0.297120 5_3:+2221877 Msa0791300:CDS
ATGACCCAAAATTGCGATAA+TGG 0.322359 5_3:-2221110 None:intergenic
TAGCTGTGTGCAATGTCTTT+TGG 0.322545 5_3:-2222440 None:intergenic
TTCATCTTTGTAGAAATTGC+TGG 0.328883 5_3:+2222398 Msa0791300:intron
AGATGAGATCAATCCAAAAT+TGG 0.364053 5_3:+2221908 Msa0791300:CDS
AGTGAGCTCATTTAGGTATG+AGG 0.407367 5_3:+2221884 Msa0791300:CDS
CATCTTGAACAGGAGATGTT+TGG 0.417110 5_3:-2219041 None:intergenic
ACAGATTAGAAAAGCTTATG+AGG 0.471180 5_3:+2221153 Msa0791300:CDS
GATTGTGACAAGGGCTGAAA+AGG 0.472813 5_3:+2222831 Msa0791300:CDS
CGTCTTGAGTCAGAAATCTC+TGG 0.477459 5_3:+2221202 Msa0791300:CDS
AGAGCCTCAGCATCTTGAAC+AGG 0.477894 5_3:-2219051 None:intergenic
ACGCTTGTAGCGGTTATGAT+AGG 0.478212 5_3:-2221568 None:intergenic
AAATTTGGAACCGATGAAGA+TGG 0.484865 5_3:+2222796 Msa0791300:CDS
AGAAATCTCTGGTGACTTTG+AGG 0.496880 5_3:+2221213 Msa0791300:CDS
GCAGTTTCTGAGGAAACCTC+AGG 0.498057 5_3:+2222910 Msa0791300:CDS
GCTATCAACTGAAGAGCTCT+TGG 0.504256 5_3:+2221533 Msa0791300:CDS
GCAACAATGAAGAAGTCGTT+AGG 0.507578 5_3:+2221979 Msa0791300:CDS
AAAACAGCATCACGGTCTGC+AGG 0.524079 5_3:-2221447 None:intergenic
CACCACCGGTCATCTTCGCC+AGG 0.524516 5_3:+2221617 Msa0791300:CDS
TGAACAACAATGGTGGCCAT+TGG 0.524982 5_3:-2219015 None:intergenic
GAAAGTGTCAAGGAAAAGAA+AGG 0.529912 5_3:+2221957 Msa0791300:CDS
TGCCATGTTCATCTCGATAA+CGG 0.533113 5_3:-2222046 None:intergenic
ACATGGCATCTCCATTAGTA+AGG 0.533720 5_3:+2222061 Msa0791300:CDS
GTGAGCTCATTTAGGTATGA+GGG 0.533747 5_3:+2221885 Msa0791300:CDS
ACTTGCCTGGCGAAGATGAC+CGG 0.547219 5_3:-2221622 None:intergenic
TCTTGAAGATGCAGTTTCTG+AGG 0.550644 5_3:+2222900 Msa0791300:CDS
TCCAAAATTGGCACAAACTG+AGG 0.551400 5_3:+2221920 Msa0791300:CDS
AAGGGCTGAAAAGGATCTGA+AGG 0.556711 5_3:+2222840 Msa0791300:CDS
AGCAGACGCATCTTCTTCGA+TGG 0.556857 5_3:-2221592 None:intergenic
GCGGCTGAGCCCATCTTCAT+CGG 0.558741 5_3:-2222806 None:intergenic
AATTTGGAACCGATGAAGAT+GGG 0.559458 5_3:+2222797 Msa0791300:CDS
GCTCTCCGACTTGCTTTCAA+AGG 0.560633 5_3:+2219069 Msa0791300:CDS
CTTCGATGGAACGCTTGTAG+CGG 0.565122 5_3:-2221578 None:intergenic
TTCAGAGGGCTGTGTACCGG+TGG 0.570665 5_3:+2221415 Msa0791300:intron
ATCTCCTGTTCAAGATGCTG+AGG 0.576916 5_3:+2219047 Msa0791300:CDS
AAGTTGAGTCTTGCTCCTTG+TGG 0.582635 5_3:-2222009 None:intergenic
AGGATGGGGTGCTGATAACA+AGG 0.586318 5_3:+2221087 Msa0791300:intron
ATCAATGTAGCAATCAGGAA+TGG 0.588048 5_3:+2221471 Msa0791300:CDS
CAGCCGCGTGATTGTGACAA+GGG 0.593454 5_3:+2222822 Msa0791300:CDS
GGCTGTGTACCGGTGGATGT+TGG 0.594758 5_3:+2221422 Msa0791300:CDS
GAACTTCTTGTAGTCCCCTG+AGG 0.600520 5_3:-2222926 None:intergenic
GATGCGTCTGCTCACACCAC+CGG 0.601792 5_3:+2221603 Msa0791300:CDS
CAAGCTAACTATCACTCCAA+TGG 0.605638 5_3:+2218999 Msa0791300:exon
AACCGTTATCGAGATGAACA+TGG 0.608246 5_3:+2222044 Msa0791300:CDS
CTGAAGAGCTCTTGGCAGTG+AGG 0.608288 5_3:+2221541 Msa0791300:CDS
CTGCAGGTTCCAACATCCAC+CGG 0.614647 5_3:-2221431 None:intergenic
TCAGCCGCGTGATTGTGACA+AGG 0.615856 5_3:+2222821 Msa0791300:CDS
CAGCCCTTGTCACAATCACG+CGG 0.616887 5_3:-2222825 None:intergenic
GTCATAGAAATGTTCATCAG+AGG 0.629014 5_3:+2221128 Msa0791300:CDS
TATTATTCATGAAAGTGTCA+AGG 0.631217 5_3:+2221947 Msa0791300:CDS
CAGTTTCTGAGGAAACCTCA+GGG 0.637084 5_3:+2222911 Msa0791300:CDS
CATGTTTCCCCAAAAGAGTG+AGG 0.645029 5_3:-2222951 None:intergenic
AAGGAGCAAGACTCAACTTG+TGG 0.646109 5_3:+2222013 Msa0791300:CDS
TCGTTAGGATTCTTACCACA+AGG 0.655461 5_3:+2221994 Msa0791300:CDS
TGCCTGGCGAAGATGACCGG+TGG 0.667284 5_3:-2221619 None:intergenic
ATTCACCTTTGAAAGCAAGT+CGG 0.669613 5_3:-2219074 None:intergenic
CATTGATCAAAACAGCATCA+CGG 0.696529 5_3:-2221455 None:intergenic
TGGCAACAAAGACTATCATG+TGG 0.723538 5_3:+2221491 Msa0791300:CDS
AGTTTCTGAGGAAACCTCAG+GGG 0.750846 5_3:+2222912 Msa0791300:CDS
TTGGCTATGAACAACAATGG+TGG 0.770123 5_3:-2219022 None:intergenic
TGTTTGGCTATGAACAACAA+TGG 0.778872 5_3:-2219025 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGATTAATTATAATAATG+TGG + chr5_3:2219156-2219175 Msa0791300:intron 10.0%
!!! ATTTTTTAAATCATAAACAA+AGG + chr5_3:2219490-2219509 Msa0791300:intron 10.0%
!!! TTGTATTTTTGTTTATAATT+GGG - chr5_3:2219604-2219623 None:intergenic 10.0%
!!! TTTGTATTTTTGTTTATAAT+TGG - chr5_3:2219605-2219624 None:intergenic 10.0%
!! TAAAAAAAATTACAATTTGA+TGG - chr5_3:2219875-2219894 None:intergenic 10.0%
!! TATAATAATCTATTACAAAA+AGG + chr5_3:2221024-2221043 Msa0791300:intron 10.0%
!! AAAATAATATTATAAAATGG+TGG - chr5_3:2222584-2222603 None:intergenic 10.0%
!!! AATATTATTTTTTCATTTCA+TGG + chr5_3:2222593-2222612 Msa0791300:intron 10.0%
!! TAAAAATTATTGAACATTGA+GGG - chr5_3:2221768-2221787 None:intergenic 15.0%
!! ATAAAAATTATTGAACATTG+AGG - chr5_3:2221769-2221788 None:intergenic 15.0%
!!! TAATTAACCTTTTTCATTTA+CGG + chr5_3:2222091-2222110 Msa0791300:intron 15.0%
!!! ATTGTTTTATAAAAGACTTT+CGG - chr5_3:2222177-2222196 None:intergenic 15.0%
!!! ATTTACTTTTTAAGTAGATC+AGG - chr5_3:2219670-2219689 None:intergenic 20.0%
!!! ACAAAACTTATGAAGATTTT+AGG + chr5_3:2219749-2219768 Msa0791300:intron 20.0%
!!! AAAGAAAAAATTTGTTAGCT+AGG + chr5_3:2219958-2219977 Msa0791300:intron 20.0%
!!! TTATTTAGAATTTAGATACC+AGG + chr5_3:2220008-2220027 Msa0791300:intron 20.0%
!! AATTATATAAGAAGAACCTA+TGG + chr5_3:2220211-2220230 Msa0791300:intron 20.0%
!!! GATATATTTTCCTTACTATA+TGG - chr5_3:2220252-2220271 None:intergenic 20.0%
!! TCAAATGAAGCAATAATTTA+AGG - chr5_3:2220356-2220375 None:intergenic 20.0%
!!! AATAATCTTTTTTTTGGTAG+TGG + chr5_3:2220923-2220942 Msa0791300:intron 20.0%
!! AAAAATTATTGAACATTGAG+GGG - chr5_3:2221767-2221786 None:intergenic 20.0%
!! TTTGATTATAGTTGTACTAA+CGG + chr5_3:2221820-2221839 Msa0791300:intron 20.0%
!!! ATTATTTTGTACCTTACTAA+TGG - chr5_3:2222075-2222094 None:intergenic 20.0%
!! GAAAACAATTATGATGAATA+AGG - chr5_3:2222331-2222350 None:intergenic 20.0%
!!! TTTCAATTATTTTCTGTCAA+AGG - chr5_3:2222358-2222377 None:intergenic 20.0%
! TGTTTATAATTGGGATCTAA+AGG - chr5_3:2219595-2219614 None:intergenic 25.0%
!!! GTGAAAGTAGTTTACTTTTT+TGG + chr5_3:2219791-2219810 Msa0791300:intron 25.0%
! ATTATTCATTCAATAACGCA+AGG + chr5_3:2220046-2220065 Msa0791300:intron 25.0%
! TACCTACTAAATACCATTTA+TGG + chr5_3:2220087-2220106 Msa0791300:intron 25.0%
! ACCTACTAAATACCATTTAT+GGG + chr5_3:2220088-2220107 Msa0791300:intron 25.0%
! TATTGCTTCATTTGATTGAA+TGG + chr5_3:2220361-2220380 Msa0791300:intron 25.0%
! TCCATTAGCAAAATATATTG+TGG + chr5_3:2220424-2220443 Msa0791300:intron 25.0%
!! ATTTCTTTTAAGCAAAGTCT+CGG - chr5_3:2220857-2220876 None:intergenic 25.0%
!! AAATGTAATTTTCTTTCGCT+AGG + chr5_3:2220873-2220892 Msa0791300:intron 25.0%
! ACAATGCATAAAATATGCAA+AGG - chr5_3:2220968-2220987 None:intergenic 25.0%
!! ACCGTTGATGAATAAATTAA+TGG + chr5_3:2221290-2221309 Msa0791300:intron 25.0%
! GCCATTAATTTATTCATCAA+CGG - chr5_3:2221294-2221313 None:intergenic 25.0%
! TATTTCAATACACTCGTAAT+GGG - chr5_3:2221339-2221358 None:intergenic 25.0%
! ATATTTCAATACACTCGTAA+TGG - chr5_3:2221340-2221359 None:intergenic 25.0%
!!! TATTATTCATGAAAGTGTCA+AGG + chr5_3:2221947-2221966 Msa0791300:CDS 25.0%
! CTTTCTATGATCAAATATCT+CGG + chr5_3:2222517-2222536 Msa0791300:intron 25.0%
!! AAATCACTAAATTTTCTCCA+TGG + chr5_3:2222661-2222680 Msa0791300:intron 25.0%
! TCAAAGTGAGTTAATGTATA+AGG - chr5_3:2222734-2222753 None:intergenic 25.0%
!! ATAATTTTCCGATTATGTGT+AGG + chr5_3:2222753-2222772 Msa0791300:intron 25.0%
CGTAAAATAAGTTCTCATTG+AGG - chr5_3:2219709-2219728 None:intergenic 30.0%
ATGAATAATCAATACCACCA+AGG - chr5_3:2220035-2220054 None:intergenic 30.0%
CCTACTAAATACCATTTATG+GGG + chr5_3:2220089-2220108 Msa0791300:intron 30.0%
AAATACCATTTATGGGGATA+AGG + chr5_3:2220095-2220114 Msa0791300:intron 30.0%
AATACCATTTATGGGGATAA+GGG + chr5_3:2220096-2220115 Msa0791300:intron 30.0%
! TTTTCCTTACTATATGGTGT+TGG - chr5_3:2220246-2220265 None:intergenic 30.0%
! GCCACAATATATTTTGCTAA+TGG - chr5_3:2220428-2220447 None:intergenic 30.0%
TGTGCTTCAATATAAAGTGT+CGG + chr5_3:2220611-2220630 Msa0791300:intron 30.0%
CTTATGATTGATCAATGTGA+TGG + chr5_3:2220641-2220660 Msa0791300:intron 30.0%
! TTTCTTTTAAGCAAAGTCTC+GGG - chr5_3:2220856-2220875 None:intergenic 30.0%
!! ACTTATTTTTCAAACTCTGC+AGG + chr5_3:2221067-2221086 Msa0791300:intron 30.0%
ACAGATTAGAAAAGCTTATG+AGG + chr5_3:2221153-2221172 Msa0791300:CDS 30.0%
! TTTTGATCAATGTAGCAATC+AGG + chr5_3:2221466-2221485 Msa0791300:CDS 30.0%
TTGACCACATAAACATCATT+TGG - chr5_3:2221663-2221682 None:intergenic 30.0%
AACATAAAACTCAGTCGAAT+CGG + chr5_3:2221688-2221707 Msa0791300:intron 30.0%
CGAATCGGATTATAACATAA+TGG + chr5_3:2221703-2221722 Msa0791300:intron 30.0%
TTGAGGGGATAAATACATTA+TGG - chr5_3:2221752-2221771 None:intergenic 30.0%
CTCAAAATCAAGCAAACATT+CGG - chr5_3:2221847-2221866 None:intergenic 30.0%
AGATGAGATCAATCCAAAAT+TGG + chr5_3:2221908-2221927 Msa0791300:CDS 30.0%
TCTGTAACCGTAAATGAAAA+AGG - chr5_3:2222101-2222120 None:intergenic 30.0%
TTCATTTACGGTTACAGATA+AGG + chr5_3:2222103-2222122 Msa0791300:intron 30.0%
TTCATCTTTGTAGAAATTGC+TGG + chr5_3:2222398-2222417 Msa0791300:intron 30.0%
!! AAAAGTACTATGAGAAGGTT+AGG + chr5_3:2222484-2222503 Msa0791300:intron 30.0%
CGAGATATTTGATCATAGAA+AGG - chr5_3:2222519-2222538 None:intergenic 30.0%
TGTCATGTAGGACATTTATT+TGG - chr5_3:2222690-2222709 None:intergenic 30.0%
! TCTCAATGATTTTGTCATGT+AGG - chr5_3:2222702-2222721 None:intergenic 30.0%
TGTTTGGCTATGAACAACAA+TGG - chr5_3:2219028-2219047 None:intergenic 35.0%
! ATTCACCTTTGAAAGCAAGT+CGG - chr5_3:2219077-2219096 None:intergenic 35.0%
GGGATCTAAAGGAGTTATAT+AGG - chr5_3:2219584-2219603 None:intergenic 35.0%
TTCATTCAATAACGCAAGGT+AGG + chr5_3:2220050-2220069 Msa0791300:intron 35.0%
CCCCATAAATGGTATTTAGT+AGG - chr5_3:2220092-2220111 None:intergenic 35.0%
AGCTATAGTGCTATGTTAGT+AGG - chr5_3:2220186-2220205 None:intergenic 35.0%
TTCACCAACACCATATAGTA+AGG + chr5_3:2220239-2220258 Msa0791300:intron 35.0%
! ACCTTTGAAAGCATGTTGAA+GGG - chr5_3:2220331-2220350 None:intergenic 35.0%
! AACCTTTGAAAGCATGTTGA+AGG - chr5_3:2220332-2220351 None:intergenic 35.0%
!!! ATCTTTTTTTTGGTAGTGGC+CGG + chr5_3:2220927-2220946 Msa0791300:intron 35.0%
ATAAAATATGCAAAGGTCCG+GGG - chr5_3:2220961-2220980 None:intergenic 35.0%
CATAAAATATGCAAAGGTCC+GGG - chr5_3:2220962-2220981 None:intergenic 35.0%
GCATAAAATATGCAAAGGTC+CGG - chr5_3:2220963-2220982 None:intergenic 35.0%
!! ATTTTTCAAACTCTGCAGGA+TGG + chr5_3:2221071-2221090 Msa0791300:intron 35.0%
!! TTTTTCAAACTCTGCAGGAT+GGG + chr5_3:2221072-2221091 Msa0791300:intron 35.0%
! AAGGCCATTATCGCAATTTT+GGG + chr5_3:2221106-2221125 Msa0791300:CDS 35.0%
ATGACCCAAAATTGCGATAA+TGG - chr5_3:2221113-2221132 None:intergenic 35.0%
GTCATAGAAATGTTCATCAG+AGG + chr5_3:2221128-2221147 Msa0791300:CDS 35.0%
! CTTTAGTGTCTAAAGTGAGT+TGG - chr5_3:2221258-2221277 None:intergenic 35.0%
ACTCACTTTAGACACTAAAG+TGG + chr5_3:2221258-2221277 Msa0791300:intron 35.0%
!!! AACATGACCTTGTTTTTCAG+AGG + chr5_3:2221400-2221419 Msa0791300:intron 35.0%
!!! ACATGACCTTGTTTTTCAGA+GGG + chr5_3:2221401-2221420 Msa0791300:intron 35.0%
CATTGATCAAAACAGCATCA+CGG - chr5_3:2221458-2221477 None:intergenic 35.0%
ATCAATGTAGCAATCAGGAA+TGG + chr5_3:2221471-2221490 Msa0791300:CDS 35.0%
! ACAATAAAGAATGACTTGCC+TGG - chr5_3:2221638-2221657 None:intergenic 35.0%
GTCACCAAATGATGTTTATG+TGG + chr5_3:2221656-2221675 Msa0791300:intron 35.0%
!! GATTCGACTGAGTTTTATGT+TGG - chr5_3:2221689-2221708 None:intergenic 35.0%
! GCAGATCGCAATTTAAAACA+TGG + chr5_3:2221796-2221815 Msa0791300:intron 35.0%
!! TTGGATTAGTGAGCTCATTT+AGG + chr5_3:2221877-2221896 Msa0791300:CDS 35.0%
!! GAAAGTGTCAAGGAAAAGAA+AGG + chr5_3:2221957-2221976 Msa0791300:CDS 35.0%
GGTTCAAGTCAGATGTAAAA+TGG - chr5_3:2222254-2222273 None:intergenic 35.0%
!! CCTTCTCATAGTACTTTTTG+TGG - chr5_3:2222482-2222501 None:intergenic 35.0%
!! CCACAAAAAGTACTATGAGA+AGG + chr5_3:2222479-2222498 Msa0791300:CDS 35.0%
! GGACATTTATTTGGTAACCA+TGG - chr5_3:2222681-2222700 None:intergenic 35.0%
! AAATTTGGAACCGATGAAGA+TGG + chr5_3:2222796-2222815 Msa0791300:CDS 35.0%
! AATTTGGAACCGATGAAGAT+GGG + chr5_3:2222797-2222816 Msa0791300:CDS 35.0%
! AAGTTCATCCTCACTCTTTT+GGG + chr5_3:2222943-2222962 Msa0791300:CDS 35.0%
CAAGCTAACTATCACTCCAA+TGG + chr5_3:2218999-2219018 Msa0791300:exon 40.0%
TTGGCTATGAACAACAATGG+TGG - chr5_3:2219025-2219044 None:intergenic 40.0%
CATCTTGAACAGGAGATGTT+TGG - chr5_3:2219044-2219063 None:intergenic 40.0%
AACACACTCATAGTCTAGCA+TGG - chr5_3:2219200-2219219 None:intergenic 40.0%
CTCATGTTCTTCACTTGTAG+CGG + chr5_3:2219516-2219535 Msa0791300:intron 40.0%
GAATTTAGATACCAGGACCT+TGG + chr5_3:2220015-2220034 Msa0791300:intron 40.0%
GTTACCCTTATCCCCATAAA+TGG - chr5_3:2220103-2220122 None:intergenic 40.0%
TATGGGGATAAGGGTAACTT+TGG + chr5_3:2220105-2220124 Msa0791300:intron 40.0%
! GTGTTGGTGAAGTTTACCAT+AGG - chr5_3:2220230-2220249 None:intergenic 40.0%
GAGTCTAGATCCTCAGTATT+TGG + chr5_3:2220684-2220703 Msa0791300:intron 40.0%
TCTAGATCCTCAGTATTTGG+AGG + chr5_3:2220687-2220706 Msa0791300:intron 40.0%
AATGTGACCTCCAAATACTG+AGG - chr5_3:2220697-2220716 None:intergenic 40.0%
TAGAGTTTGAGCAAAGTCTC+GGG - chr5_3:2220796-2220815 None:intergenic 40.0%
GTAGAGTTTGAGCAAAGTCT+CGG - chr5_3:2220797-2220816 None:intergenic 40.0%
!!! TCTTTTTTTTGGTAGTGGCC+GGG + chr5_3:2220928-2220947 Msa0791300:intron 40.0%
TGAGCATAGTTCAGTTGGTT+GGG - chr5_3:2220991-2221010 None:intergenic 40.0%
! TTTTCAAACTCTGCAGGATG+GGG + chr5_3:2221073-2221092 Msa0791300:intron 40.0%
! CAAGGCCATTATCGCAATTT+TGG + chr5_3:2221105-2221124 Msa0791300:CDS 40.0%
! TTATGAGGAGCTTTTCGAAG+AGG + chr5_3:2221168-2221187 Msa0791300:CDS 40.0%
AGAAATCTCTGGTGACTTTG+AGG + chr5_3:2221213-2221232 Msa0791300:CDS 40.0%
TGGCAACAAAGACTATCATG+TGG + chr5_3:2221491-2221510 Msa0791300:CDS 40.0%
! GCTTGATTTTGAGCAGCTTT+TGG + chr5_3:2221854-2221873 Msa0791300:intron 40.0%
! GATTTTGAGCAGCTTTTGGT+TGG + chr5_3:2221858-2221877 Msa0791300:intron 40.0%
AGTGAGCTCATTTAGGTATG+AGG + chr5_3:2221884-2221903 Msa0791300:CDS 40.0%
GTGAGCTCATTTAGGTATGA+GGG + chr5_3:2221885-2221904 Msa0791300:CDS 40.0%
TCCAAAATTGGCACAAACTG+AGG + chr5_3:2221920-2221939 Msa0791300:CDS 40.0%
GCAACAATGAAGAAGTCGTT+AGG + chr5_3:2221979-2221998 Msa0791300:CDS 40.0%
TCGTTAGGATTCTTACCACA+AGG + chr5_3:2221994-2222013 Msa0791300:CDS 40.0%
AACCGTTATCGAGATGAACA+TGG + chr5_3:2222044-2222063 Msa0791300:CDS 40.0%
TGCCATGTTCATCTCGATAA+CGG - chr5_3:2222049-2222068 None:intergenic 40.0%
ACATGGCATCTCCATTAGTA+AGG + chr5_3:2222061-2222080 Msa0791300:CDS 40.0%
GTTGTAAACCTAAAGCGACA+GGG - chr5_3:2222275-2222294 None:intergenic 40.0%
! TAGCTGTGTGCAATGTCTTT+TGG - chr5_3:2222443-2222462 None:intergenic 40.0%
CTACATATGCGAGAGCTTTA+GGG - chr5_3:2222545-2222564 None:intergenic 40.0%
CTAAAGCTCTCGCATATGTA+GGG + chr5_3:2222544-2222563 Msa0791300:intron 40.0%
GCGCAAAACCTACACATAAT+CGG - chr5_3:2222764-2222783 None:intergenic 40.0%
CGCAATGCGATCAAGAAATT+TGG + chr5_3:2222781-2222800 Msa0791300:CDS 40.0%
TCTTGAAGATGCAGTTTCTG+AGG + chr5_3:2222900-2222919 Msa0791300:CDS 40.0%
! GAAGTTCATCCTCACTCTTT+TGG + chr5_3:2222942-2222961 Msa0791300:CDS 40.0%
! AGTTCATCCTCACTCTTTTG+GGG + chr5_3:2222944-2222963 Msa0791300:CDS 40.0%
TGAACAACAATGGTGGCCAT+TGG - chr5_3:2219018-2219037 None:intergenic 45.0%
ATCTCCTGTTCAAGATGCTG+AGG + chr5_3:2219047-2219066 Msa0791300:CDS 45.0%
CGCTACAAGTGAAGAACATG+AGG - chr5_3:2219518-2219537 None:intergenic 45.0%
!! TCTTCACTTGTAGCGGATCT+AGG + chr5_3:2219523-2219542 Msa0791300:intron 45.0%
TTTAGATACCAGGACCTTGG+TGG + chr5_3:2220018-2220037 Msa0791300:intron 45.0%
AATCAATACCACCAAGGTCC+TGG - chr5_3:2220029-2220048 None:intergenic 45.0%
ATGGTTGCTGGGAGCAATAA+GGG - chr5_3:2220286-2220305 None:intergenic 45.0%
AATGGTTGCTGGGAGCAATA+AGG - chr5_3:2220287-2220306 None:intergenic 45.0%
TCAACTGAGGAATGGTTGCT+GGG - chr5_3:2220297-2220316 None:intergenic 45.0%
GCCCTTCAACATGCTTTCAA+AGG + chr5_3:2220327-2220346 Msa0791300:intron 45.0%
!! CTCCGACTAGTCTTATGAGT+CGG + chr5_3:2220720-2220739 Msa0791300:intron 45.0%
!! CACCGACTCATAAGACTAGT+CGG - chr5_3:2220725-2220744 None:intergenic 45.0%
!! GACTAGTCTTATGAGTCGGT+GGG + chr5_3:2220724-2220743 Msa0791300:intron 45.0%
AGAGTTTGTCGTCGCCTTTA+TGG - chr5_3:2220751-2220770 None:intergenic 45.0%
!!! CTTTTTTTTGGTAGTGGCCG+GGG + chr5_3:2220929-2220948 Msa0791300:intron 45.0%
GTGAGCATAGTTCAGTTGGT+TGG - chr5_3:2220992-2221011 None:intergenic 45.0%
CGTCTTGAGTCAGAAATCTC+TGG + chr5_3:2221202-2221221 Msa0791300:CDS 45.0%
! ACACAGCCCTCTGAAAAACA+AGG - chr5_3:2221410-2221429 None:intergenic 45.0%
!! TTTTTCAGAGGGCTGTGTAC+CGG + chr5_3:2221412-2221431 Msa0791300:intron 45.0%
GCTATCAACTGAAGAGCTCT+TGG + chr5_3:2221533-2221552 Msa0791300:CDS 45.0%
ACGCTTGTAGCGGTTATGAT+AGG - chr5_3:2221571-2221590 None:intergenic 45.0%
! GCCTCAGTTTGTGCCAATTT+TGG - chr5_3:2221924-2221943 None:intergenic 45.0%
AAGTTGAGTCTTGCTCCTTG+TGG - chr5_3:2222012-2222031 None:intergenic 45.0%
AAGGAGCAAGACTCAACTTG+TGG + chr5_3:2222013-2222032 Msa0791300:CDS 45.0%
CGTTGTAAACCTAAAGCGAC+AGG - chr5_3:2222276-2222295 None:intergenic 45.0%
GGCAAATTGATGTCGTGTCA+TGG - chr5_3:2222310-2222329 None:intergenic 45.0%
CCTACATATGCGAGAGCTTT+AGG - chr5_3:2222546-2222565 None:intergenic 45.0%
CCTAAAGCTCTCGCATATGT+AGG + chr5_3:2222543-2222562 Msa0791300:intron 45.0%
GATTGTGACAAGGGCTGAAA+AGG + chr5_3:2222831-2222850 Msa0791300:CDS 45.0%
AAGGGCTGAAAAGGATCTGA+AGG + chr5_3:2222840-2222859 Msa0791300:CDS 45.0%
! CAGTTTCTGAGGAAACCTCA+GGG + chr5_3:2222911-2222930 Msa0791300:CDS 45.0%
! AGTTTCTGAGGAAACCTCAG+GGG + chr5_3:2222912-2222931 Msa0791300:CDS 45.0%
CATGTTTCCCCAAAAGAGTG+AGG - chr5_3:2222954-2222973 None:intergenic 45.0%
!!! CATTTTTTAATTAATTTTTA+TGG - chr5_3:2219352-2219371 None:intergenic 5.0%
!!! AAATCTTTTTTTATTAAATA+AGG - chr5_3:2219401-2219420 None:intergenic 5.0%
!!! TAATATAATAATCTTTTTTT+TGG + chr5_3:2220917-2220936 Msa0791300:intron 5.0%
!! GAAAAAATAATATTATAAAA+TGG - chr5_3:2222587-2222606 None:intergenic 5.0%
AGAGCCTCAGCATCTTGAAC+AGG - chr5_3:2219054-2219073 None:intergenic 50.0%
! GCTCTCCGACTTGCTTTCAA+AGG + chr5_3:2219069-2219088 Msa0791300:CDS 50.0%
CTCAACTGAGGAATGGTTGC+TGG - chr5_3:2220298-2220317 None:intergenic 50.0%
CAGCAACCATTCCTCAGTTG+AGG + chr5_3:2220296-2220315 Msa0791300:intron 50.0%
GTGAGTCCTCAACTGAGGAA+TGG - chr5_3:2220305-2220324 None:intergenic 50.0%
!! CGACTAGTCTTATGAGTCGG+TGG + chr5_3:2220723-2220742 Msa0791300:intron 50.0%
ATGAGTCGGTGGGTCCATAA+AGG + chr5_3:2220734-2220753 Msa0791300:intron 50.0%
TCTCGGGTAAGCAAAGTCTC+GGG - chr5_3:2220840-2220859 None:intergenic 50.0%
GTCTCGGGTAAGCAAAGTCT+CGG - chr5_3:2220841-2220860 None:intergenic 50.0%
CCTCGTGAGCATAGTTCAGT+TGG - chr5_3:2220996-2221015 None:intergenic 50.0%
CCAACTGAACTATGCTCACG+AGG + chr5_3:2220993-2221012 Msa0791300:intron 50.0%
!! AGGATGGGGTGCTGATAACA+AGG + chr5_3:2221087-2221106 Msa0791300:intron 50.0%
AAAACAGCATCACGGTCTGC+AGG - chr5_3:2221450-2221469 None:intergenic 50.0%
CTTCGATGGAACGCTTGTAG+CGG - chr5_3:2221581-2221600 None:intergenic 50.0%
AGCAGACGCATCTTCTTCGA+TGG - chr5_3:2221595-2221614 None:intergenic 50.0%
CTTTCGGCATGCAGAGATGT+CGG - chr5_3:2222161-2222180 None:intergenic 50.0%
!! GACTTGAACCCTGTCGCTTT+AGG + chr5_3:2222264-2222283 Msa0791300:intron 50.0%
GCATATGTAGGGTCCAGGAA+GGG + chr5_3:2222555-2222574 Msa0791300:intron 50.0%
CATATGTAGGGTCCAGGAAG+GGG + chr5_3:2222556-2222575 Msa0791300:intron 50.0%
AAAATGGTGGTACCCCTTCC+TGG - chr5_3:2222571-2222590 None:intergenic 50.0%
! GCAGTTTCTGAGGAAACCTC+AGG + chr5_3:2222910-2222929 Msa0791300:CDS 50.0%
GAACTTCTTGTAGTCCCCTG+AGG - chr5_3:2222929-2222948 None:intergenic 50.0%
GGCTTGTGAGTCCTCAACTG+AGG - chr5_3:2220310-2220329 None:intergenic 55.0%
TTCGCTAGGCGTCACTGTGA+CGG + chr5_3:2220887-2220906 Msa0791300:intron 55.0%
CTGCAGGTTCCAACATCCAC+CGG - chr5_3:2221434-2221453 None:intergenic 55.0%
CTGAAGAGCTCTTGGCAGTG+AGG + chr5_3:2221541-2221560 Msa0791300:CDS 55.0%
ACTTGCCTGGCGAAGATGAC+CGG - chr5_3:2221625-2221644 None:intergenic 55.0%
CTCTCGCATATGTAGGGTCC+AGG + chr5_3:2222550-2222569 Msa0791300:intron 55.0%
CGCATATGTAGGGTCCAGGA+AGG + chr5_3:2222554-2222573 Msa0791300:intron 55.0%
TCAGCCGCGTGATTGTGACA+AGG + chr5_3:2222821-2222840 Msa0791300:CDS 55.0%
CAGCCGCGTGATTGTGACAA+GGG + chr5_3:2222822-2222841 Msa0791300:CDS 55.0%
CAGCCCTTGTCACAATCACG+CGG - chr5_3:2222828-2222847 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG - chr5_3:2220949-2220968 None:intergenic 60.0%
TTCAGAGGGCTGTGTACCGG+TGG + chr5_3:2221415-2221434 Msa0791300:intron 60.0%
! GGCTGTGTACCGGTGGATGT+TGG + chr5_3:2221422-2221441 Msa0791300:CDS 60.0%
GATGCGTCTGCTCACACCAC+CGG + chr5_3:2221603-2221622 Msa0791300:CDS 60.0%
GCGGCTGAGCCCATCTTCAT+CGG - chr5_3:2222809-2222828 None:intergenic 60.0%
AGTGGCCGGGGTTTGAACCC+CGG + chr5_3:2220941-2220960 Msa0791300:intron 65.0%
CACCACCGGTCATCTTCGCC+AGG + chr5_3:2221617-2221636 Msa0791300:CDS 65.0%
TGCCTGGCGAAGATGACCGG+TGG - chr5_3:2221622-2221641 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 2218967 2222978 2218967 ID=Msa0791300;Name=Msa0791300
chr5_3 mRNA 2218967 2222978 2218967 ID=Msa0791300-mRNA-1;Parent=Msa0791300;Name=Msa0791300-mRNA-1;_AED=0.10;_eAED=0.10;_QI=51|1|0.83|1|1|1|6|0|314
chr5_3 exon 2218967 2219090 2218967 ID=Msa0791300-mRNA-1:exon:919;Parent=Msa0791300-mRNA-1
chr5_3 exon 2221089 2221234 2221089 ID=Msa0791300-mRNA-1:exon:920;Parent=Msa0791300-mRNA-1
chr5_3 exon 2221420 2221638 2221420 ID=Msa0791300-mRNA-1:exon:921;Parent=Msa0791300-mRNA-1
chr5_3 exon 2221870 2222082 2221870 ID=Msa0791300-mRNA-1:exon:922;Parent=Msa0791300-mRNA-1
chr5_3 exon 2222411 2222500 2222411 ID=Msa0791300-mRNA-1:exon:923;Parent=Msa0791300-mRNA-1
chr5_3 exon 2222775 2222978 2222775 ID=Msa0791300-mRNA-1:exon:924;Parent=Msa0791300-mRNA-1
chr5_3 five_prime_UTR 2218967 2219017 2218967 ID=Msa0791300-mRNA-1:five_prime_utr;Parent=Msa0791300-mRNA-1
chr5_3 CDS 2219018 2219090 2219018 ID=Msa0791300-mRNA-1:cds;Parent=Msa0791300-mRNA-1
chr5_3 CDS 2221089 2221234 2221089 ID=Msa0791300-mRNA-1:cds;Parent=Msa0791300-mRNA-1
chr5_3 CDS 2221420 2221638 2221420 ID=Msa0791300-mRNA-1:cds;Parent=Msa0791300-mRNA-1
chr5_3 CDS 2221870 2222082 2221870 ID=Msa0791300-mRNA-1:cds;Parent=Msa0791300-mRNA-1
chr5_3 CDS 2222411 2222500 2222411 ID=Msa0791300-mRNA-1:cds;Parent=Msa0791300-mRNA-1
chr5_3 CDS 2222775 2222978 2222775 ID=Msa0791300-mRNA-1:cds;Parent=Msa0791300-mRNA-1
Gene Sequence

>Msa0791300

ATGGCCACCATTGTTGTTCATAGCCAAACATCTCCTGTTCAAGATGCTGAGGCTCTCCGACTTGCTTTCAAAGGATGGGGTGCTGATAACAAGGCCATTATCGCAATTTTGGGTCATAGAAATGTTCATCAGAGGCAACAGATTAGAAAAGCTTATGAGGAGCTTTTCGAAGAGGATCTCATCAAACGTCTTGAGTCAGAAATCTCTGGTGACTTTGAGAGGGCTGTGTACCGGTGGATGTTGGAACCTGCAGACCGTGATGCTGTTTTGATCAATGTAGCAATCAGGAATGGCAACAAAGACTATCATGTGGTTGCTGAAATTGCTTCTGTGCTATCAACTGAAGAGCTCTTGGCAGTGAGGCGCGCCTATCATAACCGCTACAAGCGTTCCATCGAAGAAGATGCGTCTGCTCACACCACCGGTCATCTTCGCCAGCTTTTGGTTGGATTAGTGAGCTCATTTAGGTATGAGGGAGATGAGATCAATCCAAAATTGGCACAAACTGAGGCTAATATTATTCATGAAAGTGTCAAGGAAAAGAAAGGCAACAATGAAGAAGTCGTTAGGATTCTTACCACAAGGAGCAAGACTCAACTTGTGGCAACTTTCAACCGTTATCGAGATGAACATGGCATCTCCATTAGTAAGAAATTGCTGGATCAAACATCTGATGACTTCCAAAAGACATTGCACACAGCTATTCGTTGCATCAATGACCACAAAAAGTACTATGAGAAGGTTTTGCGCAATGCGATCAAGAAATTTGGAACCGATGAAGATGGGCTCAGCCGCGTGATTGTGACAAGGGCTGAAAAGGATCTGAAGGAAATCAAAGAGCTGTACTACAAGAGAAACAGTGTTCATCTTGAAGATGCAGTTTCTGAGGAAACCTCAGGGGACTACAAGAAGTTCATCCTCACTCTTTTGGGGAAACATGATTAA

Protein sequence

>Msa0791300

MATIVVHSQTSPVQDAEALRLAFKGWGADNKAIIAILGHRNVHQRQQIRKAYEELFEEDLIKRLESEISGDFERAVYRWMLEPADRDAVLINVAIRNGNKDYHVVAEIASVLSTEELLAVRRAYHNRYKRSIEEDASAHTTGHLRQLLVGLVSSFRYEGDEINPKLAQTEANIIHESVKEKKGNNEEVVRILTTRSKTQLVATFNRYRDEHGISISKKLLDQTSDDFQKTLHTAIRCINDHKKYYEKVLRNAIKKFGTDEDGLSRVIVTRAEKDLKEIKELYYKRNSVHLEDAVSEETSGDYKKFILTLLGKHD*