AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588240 MtrunA17_Chr4g0004571 98.355 304 5 0 1 304 1 304 0.0 617
Msa0588240 MtrunA17_Chr2g0331771 61.409 298 111 3 1 295 140 436 1.22e-123 360
Msa0588240 MtrunA17_Chr2g0331771 59.701 67 27 0 214 280 17 83 2.32e-20 90.9
Msa0588240 MtrunA17_Chr8g0366791 36.207 290 167 6 14 288 7 293 1.02e-47 161
Msa0588240 MtrunA17_Chr5g0411411 33.333 294 170 8 14 288 7 293 2.63e-41 145
Msa0588240 MtrunA17_Chr5g0411411 30.198 202 117 9 107 292 7 200 8.76e-12 64.7
Msa0588240 MtrunA17_Chr4g0046981 27.090 299 202 5 8 292 4 300 1.30e-31 119
Msa0588240 MtrunA17_Chr8g0385571 27.798 277 191 5 14 286 225 496 3.91e-27 110
Msa0588240 MtrunA17_Chr8g0385571 29.592 196 116 8 11 194 317 502 9.43e-13 68.6
Msa0588240 MtrunA17_Chr7g0252401 26.950 282 184 5 14 286 205 473 1.99e-26 108
Msa0588240 MtrunA17_Chr3g0131501 25.784 287 204 4 5 286 192 474 4.57e-26 107
Msa0588240 MtrunA17_Chr4g0028531 33.206 262 158 9 17 267 23 278 4.45e-25 102
Msa0588240 MtrunA17_Chr4g0028531 29.208 202 112 7 97 284 10 194 8.48e-12 64.7
Msa0588240 MtrunA17_Chr1g0201361 29.643 280 166 8 17 292 52 304 8.24e-25 101
Msa0588240 MtrunA17_Chr8g0383321 30.714 280 156 11 22 292 55 305 6.22e-24 99.4
Msa0588240 MtrunA17_Chr3g0135861 28.053 303 188 8 14 292 33 329 4.74e-23 97.4
Msa0588240 MtrunA17_Chr8g0347451 32.212 208 126 6 101 296 37 241 5.57e-23 97.4
Msa0588240 MtrunA17_Chr8g0347451 23.975 317 209 8 5 292 40 353 3.00e-18 84.0
Msa0588240 MtrunA17_Chr8g0386871 30.769 273 172 7 18 286 322 581 3.66e-22 96.7
Msa0588240 MtrunA17_Chr8g0386871 27.746 173 118 5 22 191 416 584 5.00e-12 66.2
Msa0588240 MtrunA17_Chr6g0463351 26.950 282 183 7 31 302 82 350 4.36e-22 94.7
Msa0588240 MtrunA17_Chr5g0396801 32.178 202 122 6 97 286 20 218 4.69e-22 94.7
Msa0588240 MtrunA17_Chr5g0396801 25.407 307 197 9 14 292 36 338 4.29e-18 83.6
Msa0588240 MtrunA17_Chr7g0269701 28.231 294 182 10 22 295 25 309 4.88e-22 94.0
Msa0588240 MtrunA17_Chr7g0269701 32.124 193 122 6 110 297 22 210 6.19e-16 77.0
Msa0588240 MtrunA17_Chr1g0196921 26.070 257 169 7 31 273 29 278 1.68e-19 86.7
Msa0588240 MtrunA17_Chr1g0196921 30.114 176 115 2 126 296 30 202 5.81e-19 85.1
Msa0588240 MtrunA17_Chr4g0063561 24.055 291 212 4 8 296 115 398 2.33e-19 87.4
Msa0588240 MtrunA17_Chr1g0149111 25.347 288 204 6 8 292 131 410 4.93e-19 86.7
Msa0588240 MtrunA17_Chr1g0149111 27.835 194 128 4 111 304 140 321 1.47e-17 82.4
Msa0588240 MtrunA17_Chr8g0378951 26.054 261 176 6 4 259 15 263 6.59e-19 85.1
Msa0588240 MtrunA17_Chr3g0137941 26.471 204 137 4 104 304 117 310 1.14e-18 85.5
Msa0588240 MtrunA17_Chr3g0137941 22.759 290 217 4 8 296 114 397 2.24e-18 84.7
Msa0588240 MtrunA17_Chr1g0195101 27.273 275 180 7 32 292 35 303 7.54e-18 82.4
Msa0588240 MtrunA17_Chr1g0195101 31.351 185 119 4 123 302 32 213 4.37e-14 71.6
Msa0588240 MtrunA17_Chr6g0455381 24.503 302 200 11 25 303 21 317 1.51e-17 81.6
Msa0588240 MtrunA17_Chr6g0488081 25.397 315 195 9 1 292 9 306 2.07e-17 81.3
Msa0588240 MtrunA17_Chr6g0488081 30.097 206 121 7 97 286 5 203 8.34e-17 79.3
Msa0588240 MtrunA17_Chr5g0423111 25.623 281 177 7 32 292 37 305 2.12e-17 81.6
Msa0588240 MtrunA17_Chr5g0423111 32.065 184 116 5 123 302 34 212 2.74e-15 75.5
Msa0588240 MtrunA17_Chr7g0240341 29.825 171 110 3 125 286 40 209 1.63e-16 78.6
Msa0588240 MtrunA17_Chr7g0240341 30.435 184 122 4 15 194 133 314 7.36e-16 76.6
Msa0588240 MtrunA17_Chr5g0431531 28.829 222 141 5 74 292 5 212 1.95e-16 78.6
Msa0588240 MtrunA17_Chr5g0431531 27.413 259 169 6 17 266 40 288 7.71e-14 70.9
Msa0588240 MtrunA17_Chr8g0343381 24.422 303 194 6 31 298 48 350 2.42e-16 78.6
Msa0588240 MtrunA17_Chr5g0436571 26.490 302 165 12 31 286 23 313 2.09e-15 75.5
Msa0588240 MtrunA17_Chr3g0133111 23.151 311 195 9 22 295 9 312 4.22e-15 74.3
Msa0588240 MtrunA17_Chr3g0086811 27.331 311 192 8 14 294 26 332 8.99e-15 73.9
Msa0588240 MtrunA17_Chr4g0008061 23.826 298 199 8 11 291 10 296 1.05e-14 73.2
Msa0588240 MtrunA17_Chr7g0219891 22.896 297 197 10 25 296 25 314 1.42e-14 72.8
Msa0588240 MtrunA17_Chr8g0372531 34.659 176 89 8 124 286 28 190 3.44e-14 71.6
Msa0588240 MtrunA17_Chr8g0372531 25.887 282 184 9 31 292 29 305 1.59e-13 69.7
Msa0588240 MtrunA17_Chr7g0241521 28.235 170 112 4 126 286 33 201 3.89e-14 71.6
Msa0588240 MtrunA17_Chr7g0241521 22.924 301 200 7 16 297 17 304 1.66e-13 69.7
Msa0588240 MtrunA17_Chr4g0000261 23.000 300 204 5 6 286 56 347 4.45e-14 72.0
Msa0588240 MtrunA17_Chr5g0412401 23.175 315 194 8 22 292 9 319 9.09e-14 70.9
Msa0588240 MtrunA17_Chr2g0296061 23.404 329 200 8 4 292 8 324 1.19e-13 70.5
Msa0588240 MtrunA17_Chr2g0328891 29.927 137 92 2 150 286 214 346 1.60e-13 70.1
Msa0588240 MtrunA17_Chr8g0367641 22.654 309 196 7 22 292 9 312 1.97e-13 69.7
Msa0588240 MtrunA17_Chr8g0367641 27.317 205 116 5 113 286 5 207 7.41e-12 65.1
Msa0588240 MtrunA17_Chr3g0103681 30.409 171 108 4 126 286 31 200 2.84e-13 68.9
Msa0588240 MtrunA17_Chr3g0103681 22.337 291 197 8 14 286 13 292 5.13e-11 62.4
Msa0588240 MtrunA17_Chr2g0293621 23.843 281 188 7 31 291 44 318 3.87e-13 68.9
Msa0588240 MtrunA17_Chr4g0006851 24.335 263 179 6 36 296 118 362 8.99e-13 68.2
Msa0588240 MtrunA17_Chr4g0067231 22.956 318 189 8 24 292 15 325 2.28e-12 66.6
Msa0588240 MtrunA17_Chr5g0436041 28.402 169 109 4 101 258 21 188 4.54e-12 65.9
Msa0588240 MtrunA17_Chr5g0436041 31.720 186 117 5 15 194 140 321 1.05e-11 64.7
Msa0588240 MtrunA17_Chr8g0352031 29.927 137 92 2 150 286 217 349 4.94e-12 65.9
Msa0588240 MtrunA17_Chr8g0393031 24.390 246 166 6 51 286 63 298 9.66e-12 64.7
Msa0588240 MtrunA17_Chr3g0088301 27.673 159 106 3 133 286 219 373 9.95e-12 65.1
Msa0588240 MtrunA17_Chr1g0200171 26.299 308 182 13 6 299 515 791 1.99e-11 64.7
Msa0588240 MtrunA17_Chr3g0136041 23.776 286 181 7 18 268 36 319 3.54e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588240 AT1G79900.1 70.847 295 77 3 1 295 1 286 7.67e-142 402
Msa0588240 AT5G46800.2 34.237 295 169 7 14 288 6 295 1.24e-42 149
Msa0588240 AT5G46800.2 28.846 208 129 7 105 297 4 207 2.22e-11 63.9
Msa0588240 AT5G46800.3 34.237 295 169 7 14 288 6 295 1.24e-42 149
Msa0588240 AT5G46800.3 28.846 208 129 7 105 297 4 207 2.22e-11 63.9
Msa0588240 AT5G46800.1 34.237 295 169 7 14 288 6 295 1.24e-42 149
Msa0588240 AT5G46800.1 28.846 208 129 7 105 297 4 207 2.22e-11 63.9
Msa0588240 AT2G33820.1 26.962 293 198 5 14 292 16 306 8.09e-36 131
Msa0588240 AT2G33820.3 26.578 301 197 7 14 292 16 314 1.24e-33 125
Msa0588240 AT1G34065.2 29.329 283 169 7 14 292 73 328 4.08e-26 105
Msa0588240 AT1G34065.1 28.421 285 169 7 14 292 80 335 5.28e-26 105
Msa0588240 AT4G11440.1 32.384 281 171 9 14 286 328 597 7.59e-26 107
Msa0588240 AT4G11440.2 32.384 281 171 9 14 286 328 597 7.59e-26 107
Msa0588240 AT2G33820.2 26.667 225 155 4 76 292 3 225 1.55e-25 102
Msa0588240 AT4G39460.2 28.966 290 179 8 16 303 58 322 1.20e-24 101
Msa0588240 AT4G39460.1 28.966 290 179 8 16 303 58 322 1.20e-24 101
Msa0588240 AT4G39460.3 28.966 290 179 8 16 303 58 322 1.20e-24 101
Msa0588240 AT5G19760.1 26.667 300 192 7 14 304 16 296 2.33e-24 100
Msa0588240 AT5G01340.1 30.976 297 178 11 17 294 18 306 2.82e-24 100
Msa0588240 AT5G01340.1 29.767 215 120 7 97 297 5 202 1.97e-12 67.0
Msa0588240 AT2G33820.4 25.641 234 157 5 14 231 16 248 1.78e-23 97.4
Msa0588240 AT4G01100.1 32.889 225 132 8 88 297 12 232 1.26e-22 96.7
Msa0588240 AT4G01100.1 23.899 318 208 8 5 292 31 344 2.88e-19 87.0
Msa0588240 AT1G25380.1 28.058 278 175 7 32 292 37 306 2.17e-22 96.3
Msa0588240 AT1G25380.2 28.058 278 175 7 32 292 37 306 2.17e-22 96.3
Msa0588240 AT4G01100.2 30.962 239 132 8 88 297 12 246 4.70e-22 95.1
Msa0588240 AT4G01100.2 22.936 327 204 8 5 287 31 353 1.00e-18 85.9
Msa0588240 AT5G42130.1 27.719 285 176 10 32 302 134 402 7.21e-21 92.4
Msa0588240 AT3G20240.1 25.246 305 191 5 6 286 42 333 7.96e-21 91.7
Msa0588240 AT2G47490.1 29.577 284 167 11 32 295 33 303 1.25e-20 90.5
Msa0588240 AT4G01100.3 34.444 180 109 5 124 297 6 182 1.25e-20 90.5
Msa0588240 AT4G01100.3 24.904 261 166 7 53 287 33 289 1.64e-17 81.6
Msa0588240 AT4G32400.1 23.793 290 214 4 8 296 106 389 1.59e-20 91.3
Msa0588240 AT1G74240.1 28.803 309 186 8 14 295 34 335 4.43e-20 89.7
Msa0588240 AT1G14140.1 25.098 255 175 6 31 273 31 281 5.72e-20 88.6
Msa0588240 AT1G14140.1 27.830 212 141 6 94 296 1 209 3.06e-15 75.1
Msa0588240 AT5G51050.1 25.175 286 204 6 5 286 210 489 1.07e-19 89.4
Msa0588240 AT5G61810.2 26.199 271 177 8 5 267 52 307 9.11e-19 85.5
Msa0588240 AT5G61810.2 28.796 191 119 7 11 194 152 332 2.48e-11 63.9
Msa0588240 AT4G26180.1 25.510 294 193 9 13 287 18 304 1.57e-18 84.7
Msa0588240 AT4G26180.1 29.744 195 121 4 104 286 15 205 4.27e-16 77.8
Msa0588240 AT4G26180.2 26.374 273 175 9 14 267 19 284 2.02e-18 84.0
Msa0588240 AT4G26180.2 29.744 195 121 4 104 286 15 205 2.21e-16 78.2
Msa0588240 AT5G61810.1 26.199 271 177 8 5 267 195 450 4.40e-18 84.7
Msa0588240 AT5G61810.1 28.796 191 119 7 11 194 295 475 3.12e-11 64.3
Msa0588240 AT4G03115.1 28.395 243 155 8 31 266 53 283 5.15e-18 83.2
Msa0588240 AT4G03115.1 27.500 200 132 6 103 299 29 218 9.59e-13 68.2
Msa0588240 AT4G03115.3 28.395 243 155 8 31 266 85 315 8.23e-18 83.2
Msa0588240 AT4G03115.3 27.500 200 132 6 103 299 61 250 1.29e-12 67.8
Msa0588240 AT1G72820.1 24.127 315 204 7 16 297 31 343 2.34e-17 81.6
Msa0588240 AT1G72820.2 24.127 315 204 7 16 297 31 343 2.34e-17 81.6
Msa0588240 AT1G74240.2 28.082 292 176 8 31 295 3 287 3.91e-17 80.9
Msa0588240 AT3G54110.1 25.185 270 176 8 14 267 13 272 1.21e-16 79.3
Msa0588240 AT3G54110.1 30.319 188 108 5 126 304 31 204 8.67e-15 73.9
Msa0588240 AT2G37890.1 29.082 196 130 5 6 194 139 332 1.91e-16 79.0
Msa0588240 AT2G37890.1 25.497 302 190 9 14 292 43 332 1.89e-15 76.3
Msa0588240 AT2G37890.1 31.250 192 117 8 105 286 41 227 7.00e-15 74.3
Msa0588240 AT1G14560.1 25.180 278 179 8 32 286 43 314 2.79e-16 78.6
Msa0588240 AT1G14560.1 27.684 177 110 4 124 286 41 213 3.01e-11 63.5
Msa0588240 AT1G14560.2 25.869 259 163 8 32 267 43 295 3.90e-16 77.8
Msa0588240 AT5G58970.1 24.342 304 197 9 2 286 3 292 5.80e-16 77.4
Msa0588240 AT3G55640.2 27.869 183 124 3 111 286 39 220 7.55e-16 76.3
Msa0588240 AT3G55640.3 27.869 183 124 3 111 286 39 220 7.55e-16 76.3
Msa0588240 AT5G66380.1 26.689 296 189 10 18 292 12 300 8.55e-16 76.6
Msa0588240 AT3G55640.1 30.769 195 129 4 1 191 130 322 1.24e-15 76.6
Msa0588240 AT3G55640.1 27.869 183 124 3 111 286 39 220 2.45e-15 75.9
Msa0588240 AT3G55640.4 30.769 195 129 4 1 191 130 322 1.24e-15 76.6
Msa0588240 AT3G55640.4 27.869 183 124 3 111 286 39 220 2.45e-15 75.9
Msa0588240 AT4G03115.6 28.139 231 149 7 41 266 2 220 1.59e-15 75.1
Msa0588240 AT3G53940.2 29.787 188 114 4 111 286 74 255 1.74e-15 75.5
Msa0588240 AT3G53940.1 29.570 186 121 5 15 194 179 360 1.87e-15 76.3
Msa0588240 AT3G53940.1 29.787 188 114 4 111 286 74 255 3.89e-15 75.5
Msa0588240 AT4G03115.5 28.111 217 142 6 52 266 8 212 2.44e-15 74.7
Msa0588240 AT4G24570.1 24.916 297 177 8 14 273 4 291 5.50e-15 74.7
Msa0588240 AT4G24570.1 27.805 205 110 6 117 286 9 210 2.35e-12 67.0
Msa0588240 AT5G07320.1 24.364 275 195 5 14 286 207 470 4.95e-14 72.8
Msa0588240 AT5G07320.1 26.178 191 124 5 11 194 296 476 9.10e-13 68.9
Msa0588240 AT5G07320.1 29.167 168 109 4 125 292 224 381 1.23e-12 68.6
Msa0588240 AT1G07030.1 27.962 211 140 5 94 302 25 225 5.55e-14 71.6
Msa0588240 AT1G07030.1 26.148 283 175 9 2 266 24 290 2.53e-11 63.9
Msa0588240 AT5G58970.2 28.723 188 112 5 126 304 32 206 8.12e-14 70.5
Msa0588240 AT1G14560.3 26.667 195 120 5 111 286 26 216 1.59e-13 69.3
Msa0588240 AT5G13490.1 29.375 160 103 3 133 286 214 369 1.84e-13 70.5
Msa0588240 AT5G13490.2 29.375 160 103 3 133 286 214 369 1.84e-13 70.5
Msa0588240 AT5G09470.1 28.662 157 106 2 134 286 77 231 2.95e-13 69.7
Msa0588240 AT5G09470.1 24.891 229 163 5 48 273 91 313 1.46e-11 64.7
Msa0588240 AT4G03115.4 27.500 200 132 6 103 299 29 218 3.70e-13 68.2
Msa0588240 AT4G03115.2 27.500 200 132 6 103 299 29 218 3.94e-13 68.2
Msa0588240 AT2G39970.1 24.242 297 180 9 31 286 23 315 4.73e-13 68.9
Msa0588240 AT5G15640.2 23.297 279 182 9 14 268 18 288 5.26e-13 68.9
Msa0588240 AT5G15640.1 23.297 279 182 9 14 268 25 295 5.52e-13 68.9
Msa0588240 AT2G46320.1 25.000 228 124 6 110 290 25 252 2.03e-12 67.4
Msa0588240 AT2G30160.1 27.473 182 123 3 111 292 43 215 2.21e-12 67.0
Msa0588240 AT2G46320.4 29.452 146 95 3 153 290 8 153 2.29e-12 65.9
Msa0588240 AT2G46320.3 29.452 146 95 3 153 290 8 153 3.28e-12 65.9
Msa0588240 AT2G46320.2 29.452 146 95 3 153 290 8 153 3.28e-12 65.9
Msa0588240 AT2G46320.5 29.452 146 95 3 153 290 8 153 3.28e-12 65.9
Msa0588240 AT5G48970.1 25.238 210 139 4 110 304 22 228 4.43e-12 66.2
Msa0588240 AT5G48970.1 23.913 322 184 9 23 292 22 334 1.63e-11 64.7
Msa0588240 AT5G56450.1 23.000 200 140 5 111 297 35 233 1.37e-11 64.7
Msa0588240 AT3G21390.1 23.676 321 189 10 14 287 14 325 1.57e-11 64.7
Msa0588240 AT3G21390.1 26.882 186 124 4 117 291 26 210 1.77e-11 64.3
Msa0588240 AT3G21390.2 23.676 321 189 10 14 287 36 347 1.80e-11 64.7
Msa0588240 AT3G21390.2 26.882 186 124 4 117 291 48 232 2.37e-11 64.3
Msa0588240 AT3G51870.1 23.792 269 184 7 36 302 120 369 1.94e-11 64.7
Msa0588240 AT2G22500.1 22.727 308 198 8 22 295 9 310 3.16e-11 63.5
Msa0588240 AT5G64970.2 27.222 180 107 5 32 191 120 295 3.25e-11 63.5
Msa0588240 AT5G64970.1 27.222 180 107 5 32 191 244 419 9.68e-11 62.8

Find 83 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACAACAGTTGTACCTTTA+TGG 0.097730 4_2:+10446134 None:intergenic
AAAGGAATTGTCTTCTGTTT+TGG 0.197837 4_2:-10446274 Msa0588240:five_prime_UTR
TGTTAAAAGCAGAACCATTT+TGG 0.220455 4_2:+10445898 None:intergenic
GGCACTGCTGGTATAATTTC+TGG 0.229075 4_2:-10445963 Msa0588240:CDS
CTTTATGGAGATTTCAATAA+TGG 0.241743 4_2:+10446149 None:intergenic
GTAAGGATAGAATGGATTTC+TGG 0.274280 4_2:-10446040 Msa0588240:exon
GAATTCTTCATGTCAAAATA+AGG 0.274507 4_2:+10446313 None:intergenic
GAATTTGTGGCTGGTGGATT+TGG 0.305163 4_2:-10445987 Msa0588240:CDS
CTTTAGACAACATTTGTCTA+AGG 0.317894 4_2:+10445874 None:intergenic
TATAATTTCTGGTTATCCTT+TGG 0.324296 4_2:-10445952 Msa0588240:CDS
CAACAAAGTGGTGGCCAAAA+TGG 0.330381 4_2:-10445912 Msa0588240:CDS
GAGTTTCTTGCAAGTAGTTC+AGG 0.334182 4_2:-10446014 Msa0588240:CDS
TTATTAGTGATAACATTGTT+TGG 0.356630 4_2:-10446105 Msa0588240:five_prime_UTR
CCTGTGTTGTGGCGCGGTTT+AGG 0.358076 4_2:-10443679 Msa0588240:CDS
ACAAACCAGTCGAAAGAATC+TGG 0.377167 4_2:-10444045 Msa0588240:CDS
CTCGTCTTCACAACATCAAA+AGG 0.383330 4_2:+10443784 None:intergenic
GCCTAATGCAACACTCTTGT+AGG 0.397929 4_2:+10444146 None:intergenic
TTTATGGAGATTTCAATAAT+GGG 0.404103 4_2:+10446150 None:intergenic
TTGGAAATCACAAAATCAAA+AGG 0.404660 4_2:-10446086 Msa0588240:five_prime_UTR
GGTGGATTTGGAGGCACTGC+TGG 0.406098 4_2:-10445975 Msa0588240:CDS
GCCAGAGCATTTGTTGTGAA+TGG 0.409963 4_2:-10443646 Msa0588240:CDS
AGACAAATGTTGTCTAAAGA+AGG 0.414361 4_2:-10445870 Msa0588240:CDS
CATTATTGAAATCTCCATAA+AGG 0.423205 4_2:-10446148 Msa0588240:five_prime_UTR
CACAATTAACTAATAGAAGA+TGG 0.423432 4_2:+10443448 None:intergenic
TTGGTGTCTGGAGGATTAGC+GGG 0.424572 4_2:-10443832 Msa0588240:CDS
GAAGATGGAGGACAAATGTT+TGG 0.429014 4_2:+10443463 None:intergenic
CGCGGCATATATCGAGGACT+TGG 0.435598 4_2:-10443973 Msa0588240:CDS
TTGTTCTTTGTACCGTGGCA+TGG 0.446647 4_2:-10445844 Msa0588240:CDS
GAATGAGAGTAAGGATAGAA+TGG 0.446826 4_2:-10446048 Msa0588240:exon
TTGAATACTATGTTGGTGTC+TGG 0.453435 4_2:-10443844 Msa0588240:CDS
TAGTTCAGGTAGAGAATTTG+TGG 0.458521 4_2:-10446000 Msa0588240:CDS
GAGTGTTGCATTAGGCGGAA+TGG 0.463700 4_2:-10444139 Msa0588240:CDS
AGTGTTGCATTAGGCGGAAT+GGG 0.466863 4_2:-10444138 Msa0588240:CDS
TTGTTCCAGATTCTTTCGAC+TGG 0.488947 4_2:+10444040 None:intergenic
CAATGAAAACGTTCAAATGC+AGG 0.490208 4_2:-10443578 Msa0588240:CDS
ACGAAAAGCGTCAGAGAAGA+AGG 0.494368 4_2:-10443706 Msa0588240:CDS
TGAAAAGTAACTGATGCTAA+TGG 0.501788 4_2:+10445816 None:intergenic
TGTTCTTTGTACCGTGGCAT+GGG 0.502148 4_2:-10445843 Msa0588240:CDS
GGTAGAGAATTTGTGGCTGG+TGG 0.502758 4_2:-10445993 Msa0588240:CDS
AGAAAGTTTGAATACTATGT+TGG 0.504957 4_2:-10443851 Msa0588240:CDS
GTTGGTGTCTGGAGGATTAG+CGG 0.505819 4_2:-10443833 Msa0588240:CDS
AAACATATGCAGTTCTCTCA+AGG 0.505854 4_2:-10444206 Msa0588240:CDS
TCCTACAAGAGTGTTGCATT+AGG 0.508226 4_2:-10444147 Msa0588240:CDS
AAGTTTATTGCTTTCACCAG+TGG 0.509839 4_2:-10444100 Msa0588240:CDS
ACCATTCACAACAAATGCTC+TGG 0.512219 4_2:+10443645 None:intergenic
ATGCAGGAAACAATTTAGAA+TGG 0.516293 4_2:-10443562 Msa0588240:exon
CCTAAACCGCGCCACAACAC+AGG 0.527341 4_2:+10443679 None:intergenic
GAACTACTTGCAAGAAACTC+TGG 0.529528 4_2:+10446017 None:intergenic
AGGAAACAATTTAGAATGGC+AGG 0.533361 4_2:-10443558 Msa0588240:exon
GGATCTTTAGCAGAATCAGA+TGG 0.534644 4_2:+10444174 None:intergenic
TTTGTGGCTGGTGGATTTGG+AGG 0.542646 4_2:-10445984 Msa0588240:CDS
TGGAAATCACAAAATCAAAA+GGG 0.545181 4_2:-10446085 Msa0588240:five_prime_UTR
GCATTAGGCGGAATGGGCAC+AGG 0.549467 4_2:-10444132 Msa0588240:CDS
TCAGGTAGAGAATTTGTGGC+TGG 0.550186 4_2:-10445996 Msa0588240:CDS
ATGAGGGATATACCTTCTCA+TGG 0.567380 4_2:-10443940 Msa0588240:CDS
TCATGTATATAGAAACGTAA+AGG 0.570869 4_2:-10446292 Msa0588240:five_prime_UTR
GACTTGGCATCACTATAATG+AGG 0.581438 4_2:-10443957 Msa0588240:CDS
CTAAACCGCGCCACAACACA+GGG 0.586443 4_2:+10443680 None:intergenic
AACATATGCAGTTCTCTCAA+GGG 0.587290 4_2:-10444205 Msa0588240:CDS
TCGTCTTCACAACATCAAAA+GGG 0.593439 4_2:+10443785 None:intergenic
AATGCAACACTCTTGTAGGA+TGG 0.595216 4_2:+10444150 None:intergenic
TACAAGAGTGTTGCATTAGG+CGG 0.595968 4_2:-10444144 Msa0588240:CDS
GGATACCCTGTGTTGTGGCG+CGG 0.610153 4_2:-10443685 Msa0588240:CDS
TGGTGTCTGGAGGATTAGCG+GGG 0.610871 4_2:-10443831 Msa0588240:CDS
GATCTTTAGCAGAATCAGAT+GGG 0.611273 4_2:+10444175 None:intergenic
AATACTATGTTGGTGTCTGG+AGG 0.616080 4_2:-10443841 Msa0588240:CDS
CCTTCTGCTATAAAATACAA+AGG 0.619453 4_2:-10443745 Msa0588240:CDS
AAGAAGGATACCCTGTGTTG+TGG 0.621789 4_2:-10443690 Msa0588240:CDS
CTAATGGTGCACCCATGCCA+CGG 0.621860 4_2:+10445832 None:intergenic
TCTGGACATATGAATACATG+AGG 0.629048 4_2:-10443909 Msa0588240:CDS
GCAACACTCTTGTAGGATGG+AGG 0.631532 4_2:+10444153 None:intergenic
TTAGGCGGAATGGGCACAGG+AGG 0.638617 4_2:-10444129 Msa0588240:CDS
ACTTGGCATCACTATAATGA+GGG 0.646915 4_2:-10443956 Msa0588240:CDS
CTTAGAATCAGACAACAAAG+TGG 0.668062 4_2:-10445924 Msa0588240:CDS
TGGAGAAAAGAGGGTTTGCG+CGG 0.668379 4_2:-10443991 Msa0588240:CDS
AGAATCAGACAACAAAGTGG+TGG 0.674748 4_2:-10445921 Msa0588240:CDS
CTGATTCTAAGAGTATCCAA+AGG 0.682126 4_2:+10445936 None:intergenic
GGTTTGCGCGGCATATATCG+AGG 0.692095 4_2:-10443979 Msa0588240:CDS
CTGGACATATGAATACATGA+GGG 0.692763 4_2:-10443908 Msa0588240:CDS
AATTAACTAATAGAAGATGG+AGG 0.710440 4_2:+10443451 None:intergenic
GTGGCGCGGTTTAGGAACTG+CGG 0.716540 4_2:-10443671 Msa0588240:CDS
GGTGTCTGGAGGATTAGCGG+GGG 0.720060 4_2:-10443830 Msa0588240:CDS
CTGCTTATGAGATTACACTG+AGG 0.757246 4_2:-10443612 Msa0588240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAAAAAAAATTAA+AGG - chr4_2:10443526-10443545 Msa0588240:three_prime_UTR 0.0%
!!! CATTTTTTATATATTCTATT+TGG - chr4_2:10443554-10443573 Msa0588240:exon 10.0%
!!! TAATTATTGCTTTTTTTATT+TGG - chr4_2:10444392-10444411 Msa0588240:intron 10.0%
!! AATAATAAATATTCTTTGCT+GGG + chr4_2:10444991-10445010 None:intergenic 15.0%
!! AAATAATAAATATTCTTTGC+TGG + chr4_2:10444992-10445011 None:intergenic 15.0%
!! TTTATGGAGATTTCAATAAT+GGG + chr4_2:10443595-10443614 None:intergenic 20.0%
!! TTATTAGTGATAACATTGTT+TGG - chr4_2:10443637-10443656 Msa0588240:CDS 20.0%
!! ATGCTATGATTTATTGTTTA+TGG - chr4_2:10444022-10444041 Msa0588240:CDS 20.0%
!! ATATTTGTGTAAACTCATAT+TGG - chr4_2:10444459-10444478 Msa0588240:intron 20.0%
!!! CTTTTGAATTGTTTAGATAA+AGG - chr4_2:10444488-10444507 Msa0588240:intron 20.0%
!! AATTGTTTAGATAAAGGATT+AGG - chr4_2:10444494-10444513 Msa0588240:intron 20.0%
!! ATTAGGATTAGATTAAGATT+AGG - chr4_2:10444511-10444530 Msa0588240:intron 20.0%
!! ATATTTAATATTGCTTGAGT+TGG + chr4_2:10444562-10444581 None:intergenic 20.0%
!! CAAAATATCATTACTCAATT+TGG - chr4_2:10444803-10444822 Msa0588240:intron 20.0%
!! TCCTTCAAAAAAAAAATCAT+GGG + chr4_2:10445015-10445034 None:intergenic 20.0%
!! TTCCTTCAAAAAAAAAATCA+TGG + chr4_2:10445016-10445035 None:intergenic 20.0%
!!! TATCATTATGAATCGTTTTT+TGG - chr4_2:10445483-10445502 Msa0588240:intron 20.0%
!! TAAAAGTAGCTAAAAACATA+TGG - chr4_2:10445731-10445750 Msa0588240:intron 20.0%
! GAATTCTTCATGTCAAAATA+AGG + chr4_2:10443432-10443451 None:intergenic 25.0%
! TCATGTATATAGAAACGTAA+AGG - chr4_2:10443450-10443469 Msa0588240:three_prime_UTR 25.0%
! CTTTATGGAGATTTCAATAA+TGG + chr4_2:10443596-10443615 None:intergenic 25.0%
! CATTATTGAAATCTCCATAA+AGG - chr4_2:10443594-10443613 Msa0588240:CDS 25.0%
! TTGGAAATCACAAAATCAAA+AGG - chr4_2:10443656-10443675 Msa0588240:CDS 25.0%
! TGGAAATCACAAAATCAAAA+GGG - chr4_2:10443657-10443676 Msa0588240:CDS 25.0%
!!! TATAATTTCTGGTTATCCTT+TGG - chr4_2:10443790-10443809 Msa0588240:CDS 25.0%
! ATGAGAAGAAAAGAAAAAAG+TGG - chr4_2:10444323-10444342 Msa0588240:intron 25.0%
! ATTAAGCATTCTTATCAATG+AGG + chr4_2:10444423-10444442 None:intergenic 25.0%
!!! AACCATTTTTTGACAACTTT+TGG - chr4_2:10444653-10444672 Msa0588240:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr4_2:10444738-10444757 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr4_2:10444751-10444770 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr4_2:10444750-10444769 Msa0588240:intron 25.0%
!!! TCCCATGATTTTTTTTTTGA+AGG - chr4_2:10445011-10445030 Msa0588240:intron 25.0%
!!! TCTAATTGATTTGACATCAT+GGG + chr4_2:10445049-10445068 None:intergenic 25.0%
!!! ATCTAATTGATTTGACATCA+TGG + chr4_2:10445050-10445069 None:intergenic 25.0%
!!! AAATTTTTAGACGATTTTCG+TGG + chr4_2:10445337-10445356 None:intergenic 25.0%
! ACGAAAATCGTCTAAAAATT+TGG - chr4_2:10445336-10445355 Msa0588240:intron 25.0%
! TCTCATATGAAGGAATAATA+TGG + chr4_2:10445435-10445454 None:intergenic 25.0%
!!! TGAATCGTTTTTTGGTTTTT+CGG - chr4_2:10445491-10445510 Msa0588240:intron 25.0%
!!! ATGTTTTTAGCTACTTTTAC+AGG + chr4_2:10445730-10445749 None:intergenic 25.0%
! TAAAAACATATGGAGAAAAG+AGG - chr4_2:10445741-10445760 Msa0588240:intron 25.0%
! AAAAACATATGGAGAAAAGA+GGG - chr4_2:10445742-10445761 Msa0588240:intron 25.0%
! AGAAAGTTTGAATACTATGT+TGG - chr4_2:10445891-10445910 Msa0588240:CDS 25.0%
!!! TTAACTTTGATTGTTTTGAG+TGG + chr4_2:10446211-10446230 None:intergenic 25.0%
! AATTAACTAATAGAAGATGG+AGG + chr4_2:10446294-10446313 None:intergenic 25.0%
! CACAATTAACTAATAGAAGA+TGG + chr4_2:10446297-10446316 None:intergenic 25.0%
! AAAGGAATTGTCTTCTGTTT+TGG - chr4_2:10443468-10443487 Msa0588240:three_prime_UTR 30.0%
! AAGGAATTGTCTTCTGTTTT+GGG - chr4_2:10443469-10443488 Msa0588240:three_prime_UTR 30.0%
!!! GTTTTGGGTTTGTCAAATTA+AGG - chr4_2:10443484-10443503 Msa0588240:three_prime_UTR 30.0%
! TGTTAAAAGCAGAACCATTT+TGG + chr4_2:10443847-10443866 None:intergenic 30.0%
CTTTAGACAACATTTGTCTA+AGG + chr4_2:10443871-10443890 None:intergenic 30.0%
AGACAAATGTTGTCTAAAGA+AGG - chr4_2:10443872-10443891 Msa0588240:CDS 30.0%
TGAAAAGTAACTGATGCTAA+TGG + chr4_2:10443929-10443948 None:intergenic 30.0%
!!! ATTAGCATCAGTTACTTTTC+AGG - chr4_2:10443928-10443947 Msa0588240:CDS 30.0%
ATCATCACAAATTGCAGTAT+AGG - chr4_2:10444136-10444155 Msa0588240:CDS 30.0%
AGTATAGGATTCATGTGAAT+AGG - chr4_2:10444151-10444170 Msa0588240:CDS 30.0%
AAAAAAGTGGCTGATATGAT+AGG - chr4_2:10444336-10444355 Msa0588240:intron 30.0%
!! ATATTGCTTGAGTTGGAAAA+AGG + chr4_2:10444555-10444574 None:intergenic 30.0%
! TAAATATTTTCACATGAGCC+AGG - chr4_2:10444575-10444594 Msa0588240:intron 30.0%
! TCTTCCAATTTTCATAGTAG+GGG + chr4_2:10444617-10444636 None:intergenic 30.0%
! CTCTTCCAATTTTCATAGTA+GGG + chr4_2:10444618-10444637 None:intergenic 30.0%
! TCTCTTCCAATTTTCATAGT+AGG + chr4_2:10444619-10444638 None:intergenic 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG + chr4_2:10444658-10444677 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr4_2:10444725-10444744 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr4_2:10444776-10444795 Msa0588240:intron 30.0%
! AACAGTGCTTTTGTATATTC+TGG - chr4_2:10445116-10445135 Msa0588240:intron 30.0%
! ACAGTGCTTTTGTATATTCT+GGG - chr4_2:10445117-10445136 Msa0588240:intron 30.0%
ACACACATAACTGCATAATA+AGG - chr4_2:10445158-10445177 Msa0588240:intron 30.0%
AAACTGCATATGTAGATAAC+TGG + chr4_2:10445203-10445222 None:intergenic 30.0%
TTATCTACATATGCAGTTTG+TGG - chr4_2:10445204-10445223 Msa0588240:intron 30.0%
TATCTACATATGCAGTTTGT+GGG - chr4_2:10445205-10445224 Msa0588240:intron 30.0%
CTATTGCAACATCAAAGAAA+TGG - chr4_2:10445266-10445285 Msa0588240:intron 30.0%
TGAAATAGAATTGAGCTATG+TGG + chr4_2:10445371-10445390 None:intergenic 30.0%
CACTTTAACATCTCATATGA+AGG + chr4_2:10445445-10445464 None:intergenic 30.0%
! CCTTTGTATTTTATAGCAGA+AGG + chr4_2:10446000-10446019 None:intergenic 30.0%
CCTTCTGCTATAAAATACAA+AGG - chr4_2:10445997-10446016 Msa0588240:CDS 30.0%
! GAACGTTTTCATTGTTAAAC+AGG + chr4_2:10446158-10446177 None:intergenic 30.0%
ATGCAGGAAACAATTTAGAA+TGG - chr4_2:10446180-10446199 Msa0588240:five_prime_UTR 30.0%
CTACAACAGTTGTACCTTTA+TGG + chr4_2:10443611-10443630 None:intergenic 35.0%
!!! CAAAAGGGTGATTTGTTTTG+AGG - chr4_2:10443672-10443691 Msa0588240:CDS 35.0%
!!! TGTTTTGAGGAATGAGAGTA+AGG - chr4_2:10443685-10443704 Msa0588240:CDS 35.0%
GAATGAGAGTAAGGATAGAA+TGG - chr4_2:10443694-10443713 Msa0588240:CDS 35.0%
! GTAAGGATAGAATGGATTTC+TGG - chr4_2:10443702-10443721 Msa0588240:CDS 35.0%
TAGTTCAGGTAGAGAATTTG+TGG - chr4_2:10443742-10443761 Msa0588240:CDS 35.0%
!! CTGATTCTAAGAGTATCCAA+AGG + chr4_2:10443809-10443828 None:intergenic 35.0%
CTTAGAATCAGACAACAAAG+TGG - chr4_2:10443818-10443837 Msa0588240:CDS 35.0%
ATCCGGCATAAATCATCAAT+TGG - chr4_2:10444064-10444083 Msa0588240:CDS 35.0%
TCCGGCATAAATCATCAATT+GGG - chr4_2:10444065-10444084 Msa0588240:CDS 35.0%
! ACCCAATTGATGATTTATGC+CGG + chr4_2:10444069-10444088 None:intergenic 35.0%
AAAACATCCTTTGCCATCTT+TGG - chr4_2:10444251-10444270 Msa0588240:intron 35.0%
GAACATCAAGAATCCAAAGA+TGG + chr4_2:10444267-10444286 None:intergenic 35.0%
GATGTTCTTTGAATCTCTGA+TGG - chr4_2:10444280-10444299 Msa0588240:intron 35.0%
GAATCCCCTACTATGAAAAT+TGG - chr4_2:10444610-10444629 Msa0588240:intron 35.0%
AACACTCTACTACTGTTACA+TGG - chr4_2:10444876-10444895 Msa0588240:intron 35.0%
ACACTCTACTACTGTTACAT+GGG - chr4_2:10444877-10444896 Msa0588240:intron 35.0%
! ATGTCATTGTATTGGTAGGT+GGG + chr4_2:10445095-10445114 None:intergenic 35.0%
! GTTCATGTCATTGTATTGGT+AGG + chr4_2:10445099-10445118 None:intergenic 35.0%
CACTGTTCATGTCATTGTAT+TGG + chr4_2:10445103-10445122 None:intergenic 35.0%
! GCTTTTGTATATTCTGGGTA+TGG - chr4_2:10445122-10445141 Msa0588240:intron 35.0%
TTTGTATATTCTGGGTATGG+TGG - chr4_2:10445125-10445144 Msa0588240:intron 35.0%
! TATAGCCATAAGGCATTCAA+AGG - chr4_2:10445243-10445262 Msa0588240:intron 35.0%
AATAGCCTTTGAATGCCTTA+TGG + chr4_2:10445251-10445270 None:intergenic 35.0%
!!! ATCGTTTTTTGGTTTTTCGG+TGG - chr4_2:10445494-10445513 Msa0588240:intron 35.0%
AAACATATGCAGTTCTCTCA+AGG - chr4_2:10445536-10445555 Msa0588240:intron 35.0%
AACATATGCAGTTCTCTCAA+GGG - chr4_2:10445537-10445556 Msa0588240:intron 35.0%
GATCTTTAGCAGAATCAGAT+GGG + chr4_2:10445570-10445589 None:intergenic 35.0%
AAGTTTATTGCTTTCACCAG+TGG - chr4_2:10445642-10445661 Msa0588240:intron 35.0%
ACTTGGCATCACTATAATGA+GGG - chr4_2:10445786-10445805 Msa0588240:intron 35.0%
CAGAAGTAAAAACCATGAGA+AGG + chr4_2:10445817-10445836 None:intergenic 35.0%
! CTTCTCATGGTTTTTACTTC+TGG - chr4_2:10445815-10445834 Msa0588240:CDS 35.0%
TCTGGACATATGAATACATG+AGG - chr4_2:10445833-10445852 Msa0588240:CDS 35.0%
CTGGACATATGAATACATGA+GGG - chr4_2:10445834-10445853 Msa0588240:CDS 35.0%
! TTGAATACTATGTTGGTGTC+TGG - chr4_2:10445898-10445917 Msa0588240:CDS 35.0%
TCGTCTTCACAACATCAAAA+GGG + chr4_2:10445960-10445979 None:intergenic 35.0%
CAATGAAAACGTTCAAATGC+AGG - chr4_2:10446164-10446183 Msa0588240:five_prime_UTR 35.0%
! AGGAAACAATTTAGAATGGC+AGG - chr4_2:10446184-10446203 Msa0588240:five_prime_UTR 35.0%
GAACTACTTGCAAGAAACTC+TGG + chr4_2:10443728-10443747 None:intergenic 40.0%
GAGTTTCTTGCAAGTAGTTC+AGG - chr4_2:10443728-10443747 Msa0588240:CDS 40.0%
AGAATCAGACAACAAAGTGG+TGG - chr4_2:10443821-10443840 Msa0588240:CDS 40.0%
! GGTTTTTGTTCTTTGTACCG+TGG - chr4_2:10443893-10443912 Msa0588240:CDS 40.0%
! GTTGATAAGATCCTTCGATC+CGG - chr4_2:10444047-10444066 Msa0588240:CDS 40.0%
TCAACATGATGTTGCATGTG+TGG - chr4_2:10444218-10444237 Msa0588240:CDS 40.0%
CAAGAATCCAAAGATGGCAA+AGG + chr4_2:10444261-10444280 None:intergenic 40.0%
! AATCTCTGATGGATGCGATT+TGG - chr4_2:10444291-10444310 Msa0588240:intron 40.0%
GTGGCTGATATGATAGGAAT+CGG - chr4_2:10444342-10444361 Msa0588240:intron 40.0%
! ATAGGAATCGGCTGTGATTT+TGG - chr4_2:10444354-10444373 Msa0588240:intron 40.0%
! TAGGAATCGGCTGTGATTTT+GGG - chr4_2:10444355-10444374 Msa0588240:intron 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr4_2:10444715-10444734 None:intergenic 40.0%
TCCTGAGACATTGAATCACA+TGG + chr4_2:10444903-10444922 None:intergenic 40.0%
TGATTCAATGTCTCAGGATG+AGG - chr4_2:10444905-10444924 Msa0588240:intron 40.0%
! CATGTCATTGTATTGGTAGG+TGG + chr4_2:10445096-10445115 None:intergenic 40.0%
GGATCTTTAGCAGAATCAGA+TGG + chr4_2:10445571-10445590 None:intergenic 40.0%
AATGCAACACTCTTGTAGGA+TGG + chr4_2:10445595-10445614 None:intergenic 40.0%
!! TCCTACAAGAGTGTTGCATT+AGG - chr4_2:10445595-10445614 Msa0588240:intron 40.0%
!! TACAAGAGTGTTGCATTAGG+CGG - chr4_2:10445598-10445617 Msa0588240:intron 40.0%
!! CGAATTTTGATCAACTCCAC+TGG + chr4_2:10445661-10445680 None:intergenic 40.0%
ACAAACCAGTCGAAAGAATC+TGG - chr4_2:10445697-10445716 Msa0588240:intron 40.0%
TTGTTCCAGATTCTTTCGAC+TGG + chr4_2:10445705-10445724 None:intergenic 40.0%
GACTTGGCATCACTATAATG+AGG - chr4_2:10445785-10445804 Msa0588240:intron 40.0%
ATGAGGGATATACCTTCTCA+TGG - chr4_2:10445802-10445821 Msa0588240:intron 40.0%
ATGAGGGAAAAATTGCATCC+AGG - chr4_2:10445850-10445869 Msa0588240:CDS 40.0%
CATCCAGGTTGTAGAAAAAG+TGG - chr4_2:10445865-10445884 Msa0588240:CDS 40.0%
!!! TGACCACTTTTTCTACAACC+TGG + chr4_2:10445871-10445890 None:intergenic 40.0%
! AATACTATGTTGGTGTCTGG+AGG - chr4_2:10445901-10445920 Msa0588240:CDS 40.0%
CTCGTCTTCACAACATCAAA+AGG + chr4_2:10445961-10445980 None:intergenic 40.0%
ACCATTCACAACAAATGCTC+TGG + chr4_2:10446100-10446119 None:intergenic 40.0%
CTGCTTATGAGATTACACTG+AGG - chr4_2:10446130-10446149 Msa0588240:five_prime_UTR 40.0%
GAAGATGGAGGACAAATGTT+TGG + chr4_2:10446282-10446301 None:intergenic 40.0%
TCAGGTAGAGAATTTGTGGC+TGG - chr4_2:10443746-10443765 Msa0588240:CDS 45.0%
!! GAATTTGTGGCTGGTGGATT+TGG - chr4_2:10443755-10443774 Msa0588240:CDS 45.0%
GGCACTGCTGGTATAATTTC+TGG - chr4_2:10443779-10443798 Msa0588240:CDS 45.0%
CAACAAAGTGGTGGCCAAAA+TGG - chr4_2:10443830-10443849 Msa0588240:CDS 45.0%
TTGTTCTTTGTACCGTGGCA+TGG - chr4_2:10443898-10443917 Msa0588240:CDS 45.0%
TGTTCTTTGTACCGTGGCAT+GGG - chr4_2:10443899-10443918 Msa0588240:CDS 45.0%
GATGATTTATGCCGGATCGA+AGG + chr4_2:10444061-10444080 None:intergenic 45.0%
! AGGAATCGGCTGTGATTTTG+GGG - chr4_2:10444356-10444375 Msa0588240:intron 45.0%
! ATTTTCACATGAGCCAGGTG+AGG - chr4_2:10444580-10444599 Msa0588240:intron 45.0%
GCCATGTGATTCAATGTCTC+AGG - chr4_2:10444899-10444918 Msa0588240:intron 45.0%
! ATATTCTGGGTATGGTGGAG+AGG - chr4_2:10445130-10445149 Msa0588240:intron 45.0%
! TATTCTGGGTATGGTGGAGA+GGG - chr4_2:10445131-10445150 Msa0588240:intron 45.0%
TATGGCTATACATGACCCAG+TGG + chr4_2:10445233-10445252 None:intergenic 45.0%
CTGGGTCATGTATAGCCATA+AGG - chr4_2:10445233-10445252 Msa0588240:intron 45.0%
GCCTAATGCAACACTCTTGT+AGG + chr4_2:10445599-10445618 None:intergenic 45.0%
AGTGTTGCATTAGGCGGAAT+GGG - chr4_2:10445604-10445623 Msa0588240:intron 45.0%
!! ACGAAAAGCGTCAGAGAAGA+AGG - chr4_2:10446036-10446055 Msa0588240:exon 45.0%
AAGAAGGATACCCTGTGTTG+TGG - chr4_2:10446052-10446071 Msa0588240:five_prime_UTR 45.0%
!! GCCAGAGCATTTGTTGTGAA+TGG - chr4_2:10446096-10446115 Msa0588240:five_prime_UTR 45.0%
!!! TAATATTAATTTTTTAGATA+TGG - chr4_2:10444175-10444194 Msa0588240:CDS 5.0%
!! ACAAATATAAAATTAATAAA+AGG + chr4_2:10444447-10444466 None:intergenic 5.0%
GGTAGAGAATTTGTGGCTGG+TGG - chr4_2:10443749-10443768 Msa0588240:CDS 50.0%
!! TTTGTGGCTGGTGGATTTGG+AGG - chr4_2:10443758-10443777 Msa0588240:CDS 50.0%
! TTTTCGGTGGCAGAATGCTG+TGG - chr4_2:10445507-10445526 Msa0588240:intron 50.0%
GCAACACTCTTGTAGGATGG+AGG + chr4_2:10445592-10445611 None:intergenic 50.0%
! GAGTGTTGCATTAGGCGGAA+TGG - chr4_2:10445603-10445622 Msa0588240:intron 50.0%
TGGAGAAAAGAGGGTTTGCG+CGG - chr4_2:10445751-10445770 Msa0588240:intron 50.0%
! GTTGGTGTCTGGAGGATTAG+CGG - chr4_2:10445909-10445928 Msa0588240:CDS 50.0%
! TTGGTGTCTGGAGGATTAGC+GGG - chr4_2:10445910-10445929 Msa0588240:CDS 50.0%
CTAATGGTGCACCCATGCCA+CGG + chr4_2:10443913-10443932 None:intergenic 55.0%
TTCACATGAGCCAGGTGAGG+TGG - chr4_2:10444583-10444602 Msa0588240:intron 55.0%
GGATTCAGATCCACCTCACC+TGG + chr4_2:10444596-10444615 None:intergenic 55.0%
! ATGCAGTTTGTGGGTGCCAC+TGG - chr4_2:10445214-10445233 Msa0588240:intron 55.0%
!! TGCAGTTTGTGGGTGCCACT+GGG - chr4_2:10445215-10445234 Msa0588240:intron 55.0%
GGTTTGCGCGGCATATATCG+AGG - chr4_2:10445763-10445782 Msa0588240:intron 55.0%
CGCGGCATATATCGAGGACT+TGG - chr4_2:10445769-10445788 Msa0588240:intron 55.0%
! TGGTGTCTGGAGGATTAGCG+GGG - chr4_2:10445911-10445930 Msa0588240:CDS 55.0%
CTAAACCGCGCCACAACACA+GGG + chr4_2:10446065-10446084 None:intergenic 55.0%
!! GGTGGATTTGGAGGCACTGC+TGG - chr4_2:10443767-10443786 Msa0588240:CDS 60.0%
! TCTGGGTATGGTGGAGAGGG+AGG - chr4_2:10445134-10445153 Msa0588240:intron 60.0%
GCATTAGGCGGAATGGGCAC+AGG - chr4_2:10445610-10445629 Msa0588240:intron 60.0%
TTAGGCGGAATGGGCACAGG+AGG - chr4_2:10445613-10445632 Msa0588240:intron 60.0%
! GGTGTCTGGAGGATTAGCGG+GGG - chr4_2:10445912-10445931 Msa0588240:CDS 60.0%
ATTAGCGGGGGTAGCGAGCT+GGG - chr4_2:10445924-10445943 Msa0588240:CDS 60.0%
GGATACCCTGTGTTGTGGCG+CGG - chr4_2:10446057-10446076 Msa0588240:five_prime_UTR 60.0%
CCTAAACCGCGCCACAACAC+AGG + chr4_2:10446066-10446085 None:intergenic 60.0%
CCTGTGTTGTGGCGCGGTTT+AGG - chr4_2:10446063-10446082 Msa0588240:five_prime_UTR 60.0%
GTGGCGCGGTTTAGGAACTG+CGG - chr4_2:10446071-10446090 Msa0588240:five_prime_UTR 60.0%
GATTAGCGGGGGTAGCGAGC+TGG - chr4_2:10445923-10445942 Msa0588240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 10443418 10446346 10443418 ID=Msa0588240;Name=Msa0588240
chr4_2 mRNA 10443418 10446346 10443418 ID=Msa0588240-mRNA-1;Parent=Msa0588240;Name=Msa0588240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=295|1|1|1|1|1|2|149|304
chr4_2 exon 10443418 10444244 10443418 ID=Msa0588240-mRNA-1:exon:2950;Parent=Msa0588240-mRNA-1
chr4_2 exon 10445815 10446346 10445815 ID=Msa0588240-mRNA-1:exon:2949;Parent=Msa0588240-mRNA-1
chr4_2 five_prime_UTR 10446052 10446346 10446052 ID=Msa0588240-mRNA-1:five_prime_utr;Parent=Msa0588240-mRNA-1
chr4_2 CDS 10445815 10446051 10445815 ID=Msa0588240-mRNA-1:cds;Parent=Msa0588240-mRNA-1
chr4_2 CDS 10443567 10444244 10443567 ID=Msa0588240-mRNA-1:cds;Parent=Msa0588240-mRNA-1
chr4_2 three_prime_UTR 10443418 10443566 10443418 ID=Msa0588240-mRNA-1:three_prime_utr;Parent=Msa0588240-mRNA-1
Gene Sequence

>Msa0588240

ATGGATTTCTGGCCAGAGTTTCTTGCAAGTAGTTCAGGTAGAGAATTTGTGGCTGGTGGATTTGGAGGCACTGCTGGTATAATTTCTGGTTATCCTTTGGATACTCTTAGAATCAGACAACAAAGTGGTGGCCAAAATGGTTCTGCTTTTAACATCCTTAGACAAATGTTGTCTAAAGAAGGTTTTTGTTCTTTGTACCGTGGCATGGGTGCACCATTAGCATCAGTTACTTTTCAGAATGCTGTGGTTTTTCAAACATATGCAGTTCTCTCAAGGGCATTTGACCCATCTGATTCTGCTAAAGATCCTCCATCCTACAAGAGTGTTGCATTAGGCGGAATGGGCACAGGAGGTCTTCAAAGTTTATTGCTTTCACCAGTGGAGTTGATCAAAATTCGACTTCAGCTGCAAAACACAAACCAGTCGAAAGAATCTGGAACAACTCCTGTAAAAGTAGCTAAAAACATATGGAGAAAAGAGGGTTTGCGCGGCATATATCGAGGACTTGGCATCACTATAATGAGGGATATACCTTCTCATGGTTTTTACTTCTGGACATATGAATACATGAGGGAAAAATTGCATCCAGGTTGTAGAAAAAGTGGTCAAGAAAGTTTGAATACTATGTTGGTGTCTGGAGGATTAGCGGGGGTAGCGAGCTGGGTTTGTTGCTACCCTTTTGATGTTGTGAAGACGAGACTACAAGCTCAAACGCCTTCTGCTATAAAATACAAAGGCGTCTATGATTGCATAACGAAAAGCGTCAGAGAAGAAGGATACCCTGTGTTGTGGCGCGGTTTAGGAACTGCGGTTGCCAGAGCATTTGTTGTGAATGGTGCTGTATTTGCTGCTTATGAGATTACACTGAGGTTCCTGTTTAACAATGAAAACGTTCAAATGCAGGAAACAATTTAG

Protein sequence

>Msa0588240

MDFWPEFLASSSGREFVAGGFGGTAGIISGYPLDTLRIRQQSGGQNGSAFNILRQMLSKEGFCSLYRGMGAPLASVTFQNAVVFQTYAVLSRAFDPSDSAKDPPSYKSVALGGMGTGGLQSLLLSPVELIKIRLQLQNTNQSKESGTTPVKVAKNIWRKEGLRGIYRGLGITIMRDIPSHGFYFWTYEYMREKLHPGCRKSGQESLNTMLVSGGLAGVASWVCCYPFDVVKTRLQAQTPSAIKYKGVYDCITKSVREEGYPVLWRGLGTAVARAFVVNGAVFAAYEITLRFLFNNENVQMQETI*