Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196160 | XP_013462721.1 | 90.909 | 253 | 22 | 1 | 1 | 253 | 1 | 252 | 3.47e-162 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196160 | sp|Q5R533|SERC3_PONAB | 31.095 | 283 | 169 | 9 | 8 | 266 | 18 | 298 | 1.30e-31 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196160 | B7FII2 | 90.909 | 253 | 22 | 1 | 1 | 253 | 1 | 252 | 1.66e-162 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064920 | Msa0196160 | 0.809881 | 1.519546e-50 | -8.615850e-47 |
| Msa0196160 | Msa0236420 | 0.801493 | 8.772424e-49 | -8.615850e-47 |
| Msa0196160 | Msa0237310 | 0.818694 | 1.715209e-52 | -8.615850e-47 |
| Msa0196160 | Msa0270960 | 0.800940 | 1.138291e-48 | -8.615850e-47 |
| Msa0196160 | Msa0274730 | 0.815244 | 1.021010e-51 | -8.615850e-47 |
| Msa0196160 | Msa0387250 | 0.814069 | 1.859143e-51 | -8.615850e-47 |
| Msa0196160 | Msa0439970 | 0.810987 | 8.769521e-51 | -8.615850e-47 |
| Msa0196160 | Msa0476680 | 0.800564 | 1.358638e-48 | -8.615850e-47 |
| Msa0196160 | Msa0645530 | 0.801307 | 9.578559e-49 | -8.615850e-47 |
| Msa0196160 | Msa0685090 | 0.801240 | 9.884691e-49 | -8.615850e-47 |
| Msa0196160 | Msa0722070 | 0.801467 | 8.882590e-49 | -8.615850e-47 |
| Msa0196160 | Msa0740640 | 0.800565 | 1.357833e-48 | -8.615850e-47 |
| Msa0196160 | Msa0763400 | 0.821181 | 4.627984e-53 | -8.615850e-47 |
| Msa0196160 | Msa1225800 | 0.814211 | 1.729073e-51 | -8.615850e-47 |
| Msa0196160 | Msa1346080 | 0.805081 | 1.585351e-49 | -8.615850e-47 |
| Msa0196160 | Msa1401460 | 0.803634 | 3.174118e-49 | -8.615850e-47 |
| Msa0196160 | Msa1426910 | 0.809165 | 2.165697e-50 | -8.615850e-47 |
| Msa0196160 | Msa1435260 | 0.826883 | 2.124499e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196160 | MtrunA17_Chr2g0287641 | 90.909 | 253 | 22 | 1 | 1 | 253 | 1 | 252 | 3.19e-166 | 467 |
| Msa0196160 | MtrunA17_Chr7g0237091 | 51.351 | 259 | 120 | 3 | 28 | 285 | 31 | 284 | 6.29e-84 | 258 |
| Msa0196160 | MtrunA17_Chr8g0390691 | 31.718 | 227 | 151 | 4 | 28 | 253 | 34 | 257 | 1.17e-29 | 115 |
| Msa0196160 | MtrunA17_Chr6g0485111 | 30.522 | 249 | 162 | 6 | 13 | 253 | 16 | 261 | 3.02e-27 | 109 |
| Msa0196160 | MtrunA17_Chr1g0169271 | 31.466 | 232 | 152 | 5 | 26 | 253 | 47 | 275 | 4.24e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196160 | AT3G06170.1 | 76.170 | 235 | 55 | 1 | 1 | 234 | 1 | 235 | 5.58e-127 | 368 |
| Msa0196160 | AT1G16180.2 | 52.045 | 269 | 123 | 3 | 18 | 285 | 21 | 284 | 8.89e-85 | 260 |
| Msa0196160 | AT1G16180.1 | 52.045 | 269 | 123 | 3 | 18 | 285 | 21 | 284 | 8.89e-85 | 260 |
| Msa0196160 | AT3G24460.2 | 31.624 | 234 | 156 | 4 | 21 | 253 | 33 | 263 | 1.36e-29 | 116 |
| Msa0196160 | AT3G24460.1 | 31.624 | 234 | 156 | 4 | 21 | 253 | 33 | 263 | 1.36e-29 | 116 |
| Msa0196160 | AT2G33205.3 | 29.478 | 268 | 173 | 4 | 28 | 291 | 49 | 304 | 1.49e-29 | 115 |
| Msa0196160 | AT2G33205.4 | 29.478 | 268 | 173 | 4 | 28 | 291 | 49 | 304 | 1.49e-29 | 115 |
| Msa0196160 | AT2G33205.6 | 29.478 | 268 | 173 | 4 | 28 | 291 | 49 | 304 | 5.40e-29 | 114 |
| Msa0196160 | AT2G33205.9 | 29.478 | 268 | 173 | 4 | 28 | 291 | 49 | 304 | 9.49e-29 | 114 |
| Msa0196160 | AT2G33205.8 | 29.478 | 268 | 173 | 4 | 28 | 291 | 49 | 304 | 1.85e-28 | 113 |
| Msa0196160 | AT2G33205.5 | 29.478 | 268 | 173 | 4 | 28 | 291 | 49 | 304 | 1.85e-28 | 113 |
| Msa0196160 | AT2G33205.1 | 29.478 | 268 | 173 | 4 | 28 | 291 | 49 | 304 | 1.89e-28 | 113 |
| Msa0196160 | AT4G13345.3 | 31.868 | 182 | 121 | 3 | 73 | 253 | 77 | 256 | 1.45e-24 | 100 |
| Msa0196160 | AT4G13345.7 | 31.868 | 182 | 121 | 3 | 73 | 253 | 77 | 256 | 1.45e-24 | 100 |
| Msa0196160 | AT4G13345.5 | 31.868 | 182 | 121 | 3 | 73 | 253 | 77 | 256 | 4.12e-24 | 100 |
| Msa0196160 | AT4G13345.1 | 31.868 | 182 | 121 | 3 | 73 | 253 | 77 | 256 | 7.90e-24 | 100 |
| Msa0196160 | AT4G13345.2 | 31.868 | 182 | 121 | 3 | 73 | 253 | 77 | 256 | 8.14e-24 | 100 |
| Msa0196160 | AT4G13345.6 | 31.868 | 182 | 121 | 3 | 73 | 253 | 77 | 256 | 8.14e-24 | 100 |
| Msa0196160 | AT4G13345.4 | 31.868 | 182 | 121 | 3 | 73 | 253 | 77 | 256 | 8.64e-24 | 100 |
| Msa0196160 | AT2G33205.2 | 29.954 | 217 | 136 | 4 | 79 | 291 | 5 | 209 | 1.92e-21 | 92.8 |
| Msa0196160 | AT2G33205.7 | 30.769 | 195 | 119 | 4 | 101 | 291 | 12 | 194 | 3.68e-20 | 89.0 |
Find 55 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCGTCTCTTATAGTTTCT+TGG | 0.240519 | 2_1:+13210004 | Msa0196160:CDS |
| ATGTATCACGCCTATCATTT+TGG | 0.291291 | 2_1:-13211002 | None:intergenic |
| AGAAGTTGGAGCACCCCTTT+TGG | 0.315618 | 2_1:+13210035 | Msa0196160:CDS |
| CATACCATACGCTAGCATTA+TGG | 0.326992 | 2_1:-13211100 | None:intergenic |
| TAGGATTCATATCGAAGTTT+GGG | 0.329009 | 2_1:+13211198 | Msa0196160:intron |
| ATAGAGCTTCAATTGCTTAG+AGG | 0.329612 | 2_1:-13211582 | None:intergenic |
| GCTCTACTTGTTATATCAAT+TGG | 0.330521 | 2_1:+13211398 | Msa0196160:CDS |
| GTAGGATTCATATCGAAGTT+TGG | 0.336621 | 2_1:+13211197 | Msa0196160:intron |
| CTCTGTTCCTCTGTAGCATC+TGG | 0.364520 | 2_1:+13209937 | Msa0196160:CDS |
| TACGCTAGCATTATGGAATC+TGG | 0.370977 | 2_1:-13211093 | None:intergenic |
| TACTCGACTGTACCCACAAT+TGG | 0.381293 | 2_1:+13211255 | Msa0196160:CDS |
| CCTTCACACCGATCATTATG+AGG | 0.407217 | 2_1:-13210978 | None:intergenic |
| GCCGTTCTTCGCGTGAGCTT+GGG | 0.408329 | 2_1:+13210928 | Msa0196160:CDS |
| GCATAGAATCACCGAGTTTG+AGG | 0.418814 | 2_1:+13212367 | Msa0196160:CDS |
| AGCCGTTCTTCGCGTGAGCT+TGG | 0.419506 | 2_1:+13210927 | Msa0196160:CDS |
| TCTTGGATTCTCAGAGAAGT+TGG | 0.423831 | 2_1:+13210021 | Msa0196160:CDS |
| CAATGTCTCGCATGGACTCA+TGG | 0.449171 | 2_1:+13212338 | Msa0196160:CDS |
| GGACTGTAAAGTCAGTGATA+TGG | 0.453462 | 2_1:+13211040 | Msa0196160:CDS |
| ACAACACGACATGGTTGATC+TGG | 0.456494 | 2_1:-13209884 | None:intergenic |
| GCATTTCTATTCATTACCTT+AGG | 0.464417 | 2_1:-13211560 | None:intergenic |
| TTGATACCATTCCTTTGTGT+GGG | 0.464431 | 2_1:-13210899 | None:intergenic |
| ATTGCAGCATTTACGCTGTC+AGG | 0.472578 | 2_1:+13211428 | Msa0196160:CDS |
| CCCATGCATCATTCCAATTG+TGG | 0.483302 | 2_1:-13211268 | None:intergenic |
| AGTTGTTGCTCTACATCCTA+AGG | 0.498071 | 2_1:+13211544 | Msa0196160:CDS |
| GTGTGAAGGACCAAAATGAT+AGG | 0.498462 | 2_1:+13210992 | Msa0196160:CDS |
| CTTGATACCATTCCTTTGTG+TGG | 0.508843 | 2_1:-13210900 | None:intergenic |
| CCATGCATCATTCCAATTGT+GGG | 0.511035 | 2_1:-13211267 | None:intergenic |
| GGGCTAAAACAACAAAGAAC+AGG | 0.518147 | 2_1:-13210957 | None:intergenic |
| TTCATATCGAAGTTTGGGGC+TGG | 0.530950 | 2_1:+13211203 | Msa0196160:CDS |
| TGTTCAATCATCCTCAAACT+CGG | 0.534810 | 2_1:-13212378 | None:intergenic |
| CAAGAATCATCGACATGGAA+AGG | 0.545245 | 2_1:-13211508 | None:intergenic |
| TCCCAAGCTCACGCGAAGAA+CGG | 0.549025 | 2_1:-13210929 | None:intergenic |
| ACTTGCAGGGATAGATTCAT+CGG | 0.567845 | 2_1:+13210873 | Msa0196160:intron |
| AAAATGATAGGCGTGATACA+TGG | 0.575329 | 2_1:+13211004 | Msa0196160:CDS |
| TACACTCGCAATGTCTCGCA+TGG | 0.575747 | 2_1:+13212330 | Msa0196160:CDS |
| GATTCCATAATGCTAGCGTA+TGG | 0.593678 | 2_1:+13211096 | Msa0196160:CDS |
| TCAAATTCGACAGTGAAACA+AGG | 0.595013 | 2_1:+13209849 | Msa0196160:five_prime_UTR |
| CCCACAATTGGAATGATGCA+TGG | 0.597215 | 2_1:+13211267 | Msa0196160:CDS |
| AGAGATTCCAGATGCTACAG+AGG | 0.599480 | 2_1:-13209944 | None:intergenic |
| ATACATGGCACCATGGTGGA+TGG | 0.602093 | 2_1:+13211019 | Msa0196160:CDS |
| TTTATTTGGTTCAACCCTGG+GGG | 0.607174 | 2_1:+13211458 | Msa0196160:CDS |
| CCTCATAATGATCGGTGTGA+AGG | 0.607647 | 2_1:+13210978 | Msa0196160:CDS |
| CCACAATTGGAATGATGCAT+GGG | 0.607719 | 2_1:+13211268 | Msa0196160:CDS |
| CGGATACCCACACAAAGGAA+TGG | 0.612647 | 2_1:+13210893 | Msa0196160:CDS |
| TGCTGCACATCTTTAACATG+TGG | 0.624992 | 2_1:+13209913 | Msa0196160:CDS |
| AATCTGGAATGAAGAATGCA+AGG | 0.631056 | 2_1:-13211077 | None:intergenic |
| GCATGATAAACAACACGACA+TGG | 0.631933 | 2_1:-13209893 | None:intergenic |
| AGGATTCATATCGAAGTTTG+GGG | 0.647048 | 2_1:+13211199 | Msa0196160:intron |
| CTTCACACCGATCATTATGA+GGG | 0.650240 | 2_1:-13210977 | None:intergenic |
| AAAAGCAAGAATCATCGACA+TGG | 0.658360 | 2_1:-13211513 | None:intergenic |
| AAATTGTTTCGATGTAAACA+CGG | 0.660920 | 2_1:+13212307 | Msa0196160:CDS |
| ACTTTACAGTCCATCCACCA+TGG | 0.694999 | 2_1:-13211029 | None:intergenic |
| CGTGATACATGGCACCATGG+TGG | 0.700209 | 2_1:+13211015 | Msa0196160:CDS |
| TTCATCGGATACCCACACAA+AGG | 0.723258 | 2_1:+13210888 | Msa0196160:CDS |
| AGGCGTGATACATGGCACCA+TGG | 0.725656 | 2_1:+13211012 | Msa0196160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTATAATTTTTCATTT+GGG | + | chr2_1:13210102-13210121 | Msa0196160:intron | 10.0% |
| !!! | ATTAACTATATAAAGAATTT+TGG | - | chr2_1:13211321-13211340 | None:intergenic | 10.0% |
| !!! | CTTTTGTATAATTTTTCATT+TGG | + | chr2_1:13210101-13210120 | Msa0196160:intron | 15.0% |
| !!! | TTATATAGTTAATTTTCCTA+TGG | + | chr2_1:13211328-13211347 | Msa0196160:intron | 15.0% |
| !! | GCAATAATTAAATTTAATGA+TGG | - | chr2_1:13212160-13212179 | None:intergenic | 15.0% |
| !! | TAAAATCTTTAGCTAAAGAA+AGG | - | chr2_1:13210080-13210099 | None:intergenic | 20.0% |
| !! | ATTGGTTAAGTTTGATAAAT+TGG | + | chr2_1:13210139-13210158 | Msa0196160:intron | 20.0% |
| !! | TTGGTTAAGTTTGATAAATT+GGG | + | chr2_1:13210140-13210159 | Msa0196160:intron | 20.0% |
| !!! | TAGAGAAAAACTTGAAATTT+TGG | + | chr2_1:13210392-13210411 | Msa0196160:intron | 20.0% |
| !! | ATGATTATTTAGTGCTTATT+TGG | + | chr2_1:13210439-13210458 | Msa0196160:intron | 20.0% |
| !! | TATATAATATTGTCGAATTG+GGG | - | chr2_1:13210636-13210655 | None:intergenic | 20.0% |
| !! | GTATATAATATTGTCGAATT+GGG | - | chr2_1:13210637-13210656 | None:intergenic | 20.0% |
| !! | AGTATATAATATTGTCGAAT+TGG | - | chr2_1:13210638-13210657 | None:intergenic | 20.0% |
| !! | GTATCCAAAAACTTATATAT+TGG | - | chr2_1:13210736-13210755 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTCTCTTTTCATT+TGG | + | chr2_1:13210837-13210856 | Msa0196160:intron | 20.0% |
| !! | TATATAAATTCAAACTTGCA+GGG | + | chr2_1:13210860-13210879 | Msa0196160:intron | 20.0% |
| !! | ATGCAAATTTATTAGCATAA+AGG | - | chr2_1:13211365-13211384 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTGCTTTAATATG+CGG | + | chr2_1:13211684-13211703 | Msa0196160:intron | 20.0% |
| !! | AATAAGGAATATACTTGTTT+AGG | - | chr2_1:13212222-13212241 | None:intergenic | 20.0% |
| !! | ATTAAGTTAAGATCAGAATA+AGG | - | chr2_1:13212238-13212257 | None:intergenic | 20.0% |
| ! | ATATTATATCCTATGAAGCA+CGG | - | chr2_1:13210343-13210362 | None:intergenic | 25.0% |
| !! | AGTGCCAATATATAAGTTTT+TGG | + | chr2_1:13210729-13210748 | Msa0196160:intron | 25.0% |
| ! | GTATATAAATTCAAACTTGC+AGG | + | chr2_1:13210859-13210878 | Msa0196160:intron | 25.0% |
| ! | TTGAGAAAGATGAACAAAAA+TGG | + | chr2_1:13211291-13211310 | Msa0196160:CDS | 25.0% |
| ! | GCTAATAAATTTGCATGTTT+AGG | + | chr2_1:13211369-13211388 | Msa0196160:intron | 25.0% |
| !! | TGTCAGGAATTCTTTTTATT+TGG | + | chr2_1:13211444-13211463 | Msa0196160:CDS | 25.0% |
| ! | CCACAATCTACTATAATTAA+TGG | - | chr2_1:13211742-13211761 | None:intergenic | 25.0% |
| ! | CCATTAATTATAGTAGATTG+TGG | + | chr2_1:13211739-13211758 | Msa0196160:intron | 25.0% |
| !! | AAATATTGTTAAGGTTGGTT+AGG | - | chr2_1:13211893-13211912 | None:intergenic | 25.0% |
| ! | AACCAACCTTAACAATATTT+CGG | + | chr2_1:13211893-13211912 | Msa0196160:intron | 25.0% |
| ! | TTCATTCCGAAATATTGTTA+AGG | - | chr2_1:13211902-13211921 | None:intergenic | 25.0% |
| ! | TATTATGATTAATCGCTGAT+AGG | - | chr2_1:13212048-13212067 | None:intergenic | 25.0% |
| !!! | TTTATATTTTAACGGACGAT+TGG | + | chr2_1:13212083-13212102 | Msa0196160:intron | 25.0% |
| ! | AAATTGTTTCGATGTAAACA+CGG | + | chr2_1:13212307-13212326 | Msa0196160:CDS | 25.0% |
| TCTCAAAAATCAGCTAGAAT+CGG | + | chr2_1:13209964-13209983 | Msa0196160:CDS | 30.0% | |
| ! | ACATGGAATTTTCTCCAAAA+GGG | - | chr2_1:13210052-13210071 | None:intergenic | 30.0% |
| ! | TACATGGAATTTTCTCCAAA+AGG | - | chr2_1:13210053-13210072 | None:intergenic | 30.0% |
| TGGGTATTTGTGTTAATGAT+TGG | + | chr2_1:13210121-13210140 | Msa0196160:intron | 30.0% | |
| ! | AAAAAAGTTAGTTTCGCACT+TGG | + | chr2_1:13210490-13210509 | Msa0196160:intron | 30.0% |
| ! | AAAAAGTTAGTTTCGCACTT+GGG | + | chr2_1:13210491-13210510 | Msa0196160:intron | 30.0% |
| TGTATATGTATAATACCCGT+AGG | + | chr2_1:13211179-13211198 | Msa0196160:intron | 30.0% | |
| AAACTTCGATATGAATCCTA+CGG | - | chr2_1:13211198-13211217 | None:intergenic | 30.0% | |
| TAGGATTCATATCGAAGTTT+GGG | + | chr2_1:13211198-13211217 | Msa0196160:intron | 30.0% | |
| AAAGGCAAATAGAAAACCAT+AGG | - | chr2_1:13211347-13211366 | None:intergenic | 30.0% | |
| !! | GCTCTACTTGTTATATCAAT+TGG | + | chr2_1:13211398-13211417 | Msa0196160:CDS | 30.0% |
| !! | TTTTTATTTGGTTCAACCCT+GGG | + | chr2_1:13211456-13211475 | Msa0196160:CDS | 30.0% |
| GCATTTCTATTCATTACCTT+AGG | - | chr2_1:13211563-13211582 | None:intergenic | 30.0% | |
| ACTCATATTGCACAAAAACA+TGG | - | chr2_1:13211615-13211634 | None:intergenic | 30.0% | |
| TTTGTGCAATATGAGTTGTT+TGG | + | chr2_1:13211619-13211638 | Msa0196160:intron | 30.0% | |
| CAAATTAGATTGTGATAGCT+TGG | + | chr2_1:13211712-13211731 | Msa0196160:intron | 30.0% | |
| TTCCGAAATATTGTTAAGGT+TGG | - | chr2_1:13211898-13211917 | None:intergenic | 30.0% | |
| ! | GAAGGTTTTCCATTTTGTTA+CGG | + | chr2_1:13212105-13212124 | Msa0196160:intron | 30.0% |
| AAACTACTACCGTAACAAAA+TGG | - | chr2_1:13212117-13212136 | None:intergenic | 30.0% | |
| ! | TAATGATGGAACTGAAAAAC+CGG | - | chr2_1:13212146-13212165 | None:intergenic | 30.0% |
| ! | TTGCACTAGTTTATGATTCT+AGG | + | chr2_1:13212257-13212276 | Msa0196160:intron | 30.0% |
| TCAAATTCGACAGTGAAACA+AGG | + | chr2_1:13209849-13209868 | Msa0196160:five_prime_UTR | 35.0% | |
| ! | ATCGGTTACTGTTTTCTCTT+TGG | + | chr2_1:13209982-13210001 | Msa0196160:CDS | 35.0% |
| ! | CATGGAATTTTCTCCAAAAG+GGG | - | chr2_1:13210051-13210070 | None:intergenic | 35.0% |
| GCTAAAGAAAGGAACTTACA+TGG | - | chr2_1:13210069-13210088 | None:intergenic | 35.0% | |
| TTCGATGCTTAGAATTGTGT+TGG | + | chr2_1:13210175-13210194 | Msa0196160:intron | 35.0% | |
| TATAGGTGTCAATCACATGT+CGG | - | chr2_1:13210216-13210235 | None:intergenic | 35.0% | |
| TGTCTGTGTCTGTTTCATAT+AGG | - | chr2_1:13210233-13210252 | None:intergenic | 35.0% | |
| GTTCAAATTCAGCTACTCAA+CGG | + | chr2_1:13210586-13210605 | Msa0196160:intron | 35.0% | |
| CATAGCGAGATTTGAACAAA+TGG | - | chr2_1:13210674-13210693 | None:intergenic | 35.0% | |
| ! | GCACTAGTGTTGTTAAATAG+AGG | - | chr2_1:13210714-13210733 | None:intergenic | 35.0% |
| !! | TTCACAAGTTTCAAGTTCTC+TGG | + | chr2_1:13210757-13210776 | Msa0196160:intron | 35.0% |
| TTGATACCATTCCTTTGTGT+GGG | - | chr2_1:13210902-13210921 | None:intergenic | 35.0% | |
| !! | GTTTTAGCCCTCATAATGAT+CGG | + | chr2_1:13210970-13210989 | Msa0196160:CDS | 35.0% |
| ! | ATGTATCACGCCTATCATTT+TGG | - | chr2_1:13211005-13211024 | None:intergenic | 35.0% |
| AAAATGATAGGCGTGATACA+TGG | + | chr2_1:13211004-13211023 | Msa0196160:CDS | 35.0% | |
| ! | AATCTGGAATGAAGAATGCA+AGG | - | chr2_1:13211080-13211099 | None:intergenic | 35.0% |
| TGTCAATCATCAATCTCACA+AGG | - | chr2_1:13211157-13211176 | None:intergenic | 35.0% | |
| AACTTCGATATGAATCCTAC+GGG | - | chr2_1:13211197-13211216 | None:intergenic | 35.0% | |
| GTAGGATTCATATCGAAGTT+TGG | + | chr2_1:13211197-13211216 | Msa0196160:intron | 35.0% | |
| AGGATTCATATCGAAGTTTG+GGG | + | chr2_1:13211199-13211218 | Msa0196160:intron | 35.0% | |
| !! | CTTTTTATTTGGTTCAACCC+TGG | + | chr2_1:13211455-13211474 | Msa0196160:CDS | 35.0% |
| !! | TTTTATTTGGTTCAACCCTG+GGG | + | chr2_1:13211457-13211476 | Msa0196160:CDS | 35.0% |
| AAAAGCAAGAATCATCGACA+TGG | - | chr2_1:13211516-13211535 | None:intergenic | 35.0% | |
| ATAGAGCTTCAATTGCTTAG+AGG | - | chr2_1:13211585-13211604 | None:intergenic | 35.0% | |
| AGAATGTGTGAGGGTTTATA+GGG | - | chr2_1:13211946-13211965 | None:intergenic | 35.0% | |
| TAGAATGTGTGAGGGTTTAT+AGG | - | chr2_1:13211947-13211966 | None:intergenic | 35.0% | |
| !! | CAGTTTGTTAGAATGTGTGA+GGG | - | chr2_1:13211955-13211974 | None:intergenic | 35.0% |
| !!! | TATTTTAACGGACGATTGGA+AGG | + | chr2_1:13212087-13212106 | Msa0196160:intron | 35.0% |
| ! | AATGATGGAACTGAAAAACC+GGG | - | chr2_1:13212145-13212164 | None:intergenic | 35.0% |
| ATTGAACCTGGTATGATTCT+GGG | + | chr2_1:13212195-13212214 | Msa0196160:intron | 35.0% | |
| GCATGATAAACAACACGACA+TGG | - | chr2_1:13209896-13209915 | None:intergenic | 40.0% | |
| TGCTGCACATCTTTAACATG+TGG | + | chr2_1:13209913-13209932 | Msa0196160:CDS | 40.0% | |
| GTGCGTCTCTTATAGTTTCT+TGG | + | chr2_1:13210004-13210023 | Msa0196160:CDS | 40.0% | |
| TCTTGGATTCTCAGAGAAGT+TGG | + | chr2_1:13210021-13210040 | Msa0196160:CDS | 40.0% | |
| CTGACATTGATACGTCAACA+TGG | - | chr2_1:13210295-13210314 | None:intergenic | 40.0% | |
| GTATCAATGTCAGAGTTGTC+TGG | + | chr2_1:13210302-13210321 | Msa0196160:intron | 40.0% | |
| TTGTCGAATTGGGGCTATAA+CGG | - | chr2_1:13210627-13210646 | None:intergenic | 40.0% | |
| !! | AGTTCTCTGGTTCTCTGAAT+TGG | + | chr2_1:13210770-13210789 | Msa0196160:intron | 40.0% |
| ACTTGCAGGGATAGATTCAT+CGG | + | chr2_1:13210873-13210892 | Msa0196160:intron | 40.0% | |
| CTTGATACCATTCCTTTGTG+TGG | - | chr2_1:13210903-13210922 | None:intergenic | 40.0% | |
| GGGCTAAAACAACAAAGAAC+AGG | - | chr2_1:13210960-13210979 | None:intergenic | 40.0% | |
| CTTCACACCGATCATTATGA+GGG | - | chr2_1:13210980-13210999 | None:intergenic | 40.0% | |
| GTGTGAAGGACCAAAATGAT+AGG | + | chr2_1:13210992-13211011 | Msa0196160:CDS | 40.0% | |
| GGACTGTAAAGTCAGTGATA+TGG | + | chr2_1:13211040-13211059 | Msa0196160:CDS | 40.0% | |
| TACGCTAGCATTATGGAATC+TGG | - | chr2_1:13211096-13211115 | None:intergenic | 40.0% | |
| GATTCCATAATGCTAGCGTA+TGG | + | chr2_1:13211096-13211115 | Msa0196160:CDS | 40.0% | |
| CATACCATACGCTAGCATTA+TGG | - | chr2_1:13211103-13211122 | None:intergenic | 40.0% | |
| AATCTCACAAGGAACCAAGA+GGG | - | chr2_1:13211146-13211165 | None:intergenic | 40.0% | |
| CCATGCATCATTCCAATTGT+GGG | - | chr2_1:13211270-13211289 | None:intergenic | 40.0% | |
| CCACAATTGGAATGATGCAT+GGG | + | chr2_1:13211268-13211287 | Msa0196160:CDS | 40.0% | |
| ! | TTTATTTGGTTCAACCCTGG+GGG | + | chr2_1:13211458-13211477 | Msa0196160:CDS | 40.0% |
| CAAGAATCATCGACATGGAA+AGG | - | chr2_1:13211511-13211530 | None:intergenic | 40.0% | |
| AGTTGTTGCTCTACATCCTA+AGG | + | chr2_1:13211544-13211563 | Msa0196160:CDS | 40.0% | |
| TGAGTTCAAGAGCTCTACAA+TGG | + | chr2_1:13211782-13211801 | Msa0196160:intron | 40.0% | |
| AGCTCTACAATGGTGAGAAA+TGG | + | chr2_1:13211792-13211811 | Msa0196160:intron | 40.0% | |
| !!! | GGAGAGTTTTCTTTCTGGTT+AGG | - | chr2_1:13211872-13211891 | None:intergenic | 40.0% |
| ! | GGTTAGGAGAGTTTTCTTTC+TGG | - | chr2_1:13211877-13211896 | None:intergenic | 40.0% |
| GGGTTTATAGGGAAAAGGAT+GGG | - | chr2_1:13211935-13211954 | None:intergenic | 40.0% | |
| AGGGTTTATAGGGAAAAGGA+TGG | - | chr2_1:13211936-13211955 | None:intergenic | 40.0% | |
| TGTGAGGGTTTATAGGGAAA+AGG | - | chr2_1:13211940-13211959 | None:intergenic | 40.0% | |
| !! | GCAGTTTGTTAGAATGTGTG+AGG | - | chr2_1:13211956-13211975 | None:intergenic | 40.0% |
| TAGAGGAAGAATTGCTGATG+TGG | - | chr2_1:13211978-13211997 | None:intergenic | 40.0% | |
| AATAACCAGGCTGAAAAGAC+AGG | - | chr2_1:13212002-13212021 | None:intergenic | 40.0% | |
| ! | TGTCTTTTCAGCCTGGTTAT+TGG | + | chr2_1:13212001-13212020 | Msa0196160:intron | 40.0% |
| ! | GTCTTTTCAGCCTGGTTATT+GGG | + | chr2_1:13212002-13212021 | Msa0196160:intron | 40.0% |
| ATTAATCGCTGATAGGACAC+TGG | - | chr2_1:13212041-13212060 | None:intergenic | 40.0% | |
| ! | ACGGTAGTAGTTTTCTTTCC+CGG | + | chr2_1:13212124-13212143 | Msa0196160:intron | 40.0% |
| CATTGAACCTGGTATGATTC+TGG | + | chr2_1:13212194-13212213 | Msa0196160:intron | 40.0% | |
| ACAACACGACATGGTTGATC+TGG | - | chr2_1:13209887-13209906 | None:intergenic | 45.0% | |
| AGAGATTCCAGATGCTACAG+AGG | - | chr2_1:13209947-13209966 | None:intergenic | 45.0% | |
| ATGAAGCACGGACATAGACA+AGG | - | chr2_1:13210331-13210350 | None:intergenic | 45.0% | |
| TGTCTATGTCCGTGCTTCAT+AGG | + | chr2_1:13210331-13210350 | Msa0196160:intron | 45.0% | |
| !! | ACTCAACGGTGTTGTGCTAT+AGG | + | chr2_1:13210600-13210619 | Msa0196160:intron | 45.0% |
| !! | CTCAACGGTGTTGTGCTATA+GGG | + | chr2_1:13210601-13210620 | Msa0196160:intron | 45.0% |
| AAACGTCGTGCTCAGAACAA+AGG | - | chr2_1:13210799-13210818 | None:intergenic | 45.0% | |
| TTCATCGGATACCCACACAA+AGG | + | chr2_1:13210888-13210907 | Msa0196160:CDS | 45.0% | |
| CCTTCACACCGATCATTATG+AGG | - | chr2_1:13210981-13211000 | None:intergenic | 45.0% | |
| CCTCATAATGATCGGTGTGA+AGG | + | chr2_1:13210978-13210997 | Msa0196160:CDS | 45.0% | |
| ACTTTACAGTCCATCCACCA+TGG | - | chr2_1:13211032-13211051 | None:intergenic | 45.0% | |
| AGTCCTTACTTTCTCCCTCT+TGG | + | chr2_1:13211129-13211148 | Msa0196160:intron | 45.0% | |
| GAACCAAGAGGGAGAAAGTA+AGG | - | chr2_1:13211135-13211154 | None:intergenic | 45.0% | |
| CAATCTCACAAGGAACCAAG+AGG | - | chr2_1:13211147-13211166 | None:intergenic | 45.0% | |
| ! | TTCATATCGAAGTTTGGGGC+TGG | + | chr2_1:13211203-13211222 | Msa0196160:CDS | 45.0% |
| TACTCGACTGTACCCACAAT+TGG | + | chr2_1:13211255-13211274 | Msa0196160:CDS | 45.0% | |
| CCCACAATTGGAATGATGCA+TGG | + | chr2_1:13211267-13211286 | Msa0196160:CDS | 45.0% | |
| CCCATGCATCATTCCAATTG+TGG | - | chr2_1:13211271-13211290 | None:intergenic | 45.0% | |
| ATTGCAGCATTTACGCTGTC+AGG | + | chr2_1:13211428-13211447 | Msa0196160:CDS | 45.0% | |
| !! | GTTTGGAGTTCTAGGAACTC+TGG | - | chr2_1:13211835-13211854 | None:intergenic | 45.0% |
| AGGAACATAGTGCTCTGGTT+TGG | - | chr2_1:13211852-13211871 | None:intergenic | 45.0% | |
| TGGTTAGGAACATAGTGCTC+TGG | - | chr2_1:13211857-13211876 | None:intergenic | 45.0% | |
| AGGCTGAAAAGACAGGTTAG+AGG | - | chr2_1:13211995-13212014 | None:intergenic | 45.0% | |
| ! | TCTAACCTGTCTTTTCAGCC+TGG | + | chr2_1:13211994-13212013 | Msa0196160:intron | 45.0% |
| !!! | GCTGATAGGACACTGGTTTT+GGG | - | chr2_1:13212034-13212053 | None:intergenic | 45.0% |
| TGTTGTTGCGACATTGAACC+TGG | + | chr2_1:13212183-13212202 | Msa0196160:intron | 45.0% | |
| TTAGGACCCAGAATCATACC+AGG | - | chr2_1:13212204-13212223 | None:intergenic | 45.0% | |
| GCATAGAATCACCGAGTTTG+AGG | + | chr2_1:13212367-13212386 | Msa0196160:CDS | 45.0% | |
| !!! | TTAATTTGTTTATATTTTAA+CGG | + | chr2_1:13212075-13212094 | Msa0196160:intron | 5.0% |
| CTCTGTTCCTCTGTAGCATC+TGG | + | chr2_1:13209937-13209956 | Msa0196160:CDS | 50.0% | |
| !! | AGAAGTTGGAGCACCCCTTT+TGG | + | chr2_1:13210035-13210054 | Msa0196160:CDS | 50.0% |
| CGGATACCCACACAAAGGAA+TGG | + | chr2_1:13210893-13210912 | Msa0196160:CDS | 50.0% | |
| ! | ATACATGGCACCATGGTGGA+TGG | + | chr2_1:13211019-13211038 | Msa0196160:CDS | 50.0% |
| !! | GTGCTCTGGTTTGGAGTTCT+AGG | - | chr2_1:13211843-13211862 | None:intergenic | 50.0% |
| TCAGCCTGGTTATTGGGCTT+AGG | + | chr2_1:13212008-13212027 | Msa0196160:intron | 50.0% | |
| !!! | CGCTGATAGGACACTGGTTT+TGG | - | chr2_1:13212035-13212054 | None:intergenic | 50.0% |
| TACACTCGCAATGTCTCGCA+TGG | + | chr2_1:13212330-13212349 | Msa0196160:CDS | 50.0% | |
| CAATGTCTCGCATGGACTCA+TGG | + | chr2_1:13212338-13212357 | Msa0196160:CDS | 50.0% | |
| TCCCAAGCTCACGCGAAGAA+CGG | - | chr2_1:13210932-13210951 | None:intergenic | 55.0% | |
| AGGCGTGATACATGGCACCA+TGG | + | chr2_1:13211012-13211031 | Msa0196160:CDS | 55.0% | |
| CGTGATACATGGCACCATGG+TGG | + | chr2_1:13211015-13211034 | Msa0196160:CDS | 55.0% | |
| AACCCTGGGGGATATGACTG+TGG | + | chr2_1:13211470-13211489 | Msa0196160:CDS | 55.0% | |
| GACCACAGTCATATCCCCCA+GGG | - | chr2_1:13211475-13211494 | None:intergenic | 55.0% | |
| AGACCACAGTCATATCCCCC+AGG | - | chr2_1:13211476-13211495 | None:intergenic | 55.0% | |
| GGGAAAAGGATGGGTGAGTG+AGG | - | chr2_1:13211926-13211945 | None:intergenic | 55.0% | |
| TGGGCCTAAGCCCAATAACC+AGG | - | chr2_1:13212015-13212034 | None:intergenic | 55.0% | |
| AGCCGTTCTTCGCGTGAGCT+TGG | + | chr2_1:13210927-13210946 | Msa0196160:CDS | 60.0% | |
| GCCGTTCTTCGCGTGAGCTT+GGG | + | chr2_1:13210928-13210947 | Msa0196160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 13209761 | 13212397 | 13209761 | ID=Msa0196160;Name=Msa0196160 |
| chr2_1 | mRNA | 13209761 | 13212397 | 13209761 | ID=Msa0196160-mRNA-1;Parent=Msa0196160;Name=Msa0196160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=134|0.75|0.6|0.8|0.75|0.6|5|0|294 |
| chr2_1 | exon | 13209761 | 13210069 | 13209761 | ID=Msa0196160-mRNA-1:exon:5744;Parent=Msa0196160-mRNA-1 |
| chr2_1 | exon | 13210881 | 13211117 | 13210881 | ID=Msa0196160-mRNA-1:exon:5745;Parent=Msa0196160-mRNA-1 |
| chr2_1 | exon | 13211201 | 13211312 | 13211201 | ID=Msa0196160-mRNA-1:exon:5746;Parent=Msa0196160-mRNA-1 |
| chr2_1 | exon | 13211391 | 13211632 | 13211391 | ID=Msa0196160-mRNA-1:exon:5747;Parent=Msa0196160-mRNA-1 |
| chr2_1 | exon | 13212279 | 13212397 | 13212279 | ID=Msa0196160-mRNA-1:exon:5748;Parent=Msa0196160-mRNA-1 |
| chr2_1 | five_prime_UTR | 13209761 | 13209894 | 13209761 | ID=Msa0196160-mRNA-1:five_prime_utr;Parent=Msa0196160-mRNA-1 |
| chr2_1 | CDS | 13209895 | 13210069 | 13209895 | ID=Msa0196160-mRNA-1:cds;Parent=Msa0196160-mRNA-1 |
| chr2_1 | CDS | 13210881 | 13211117 | 13210881 | ID=Msa0196160-mRNA-1:cds;Parent=Msa0196160-mRNA-1 |
| chr2_1 | CDS | 13211201 | 13211312 | 13211201 | ID=Msa0196160-mRNA-1:cds;Parent=Msa0196160-mRNA-1 |
| chr2_1 | CDS | 13211391 | 13211632 | 13211391 | ID=Msa0196160-mRNA-1:cds;Parent=Msa0196160-mRNA-1 |
| chr2_1 | CDS | 13212279 | 13212397 | 13212279 | ID=Msa0196160-mRNA-1:cds;Parent=Msa0196160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
