AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0740640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740640 MtrunA17_Chr5g0441191 97.037 135 4 0 1 135 1 135 2.58e-97 285
Msa0740640 MtrunA17_Chr3g0093621 56.818 132 52 2 1 131 2 129 3.15e-44 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740640 AT2G40830.1 36.923 130 60 4 2 131 3 110 6.73e-15 72.0
Msa0740640 AT2G40830.3 36.923 130 60 4 2 131 3 110 6.73e-15 72.0
Msa0740640 AT2G40830.4 36.923 130 60 4 2 131 3 110 6.73e-15 72.0
Msa0740640 AT2G40830.2 36.923 130 60 4 2 131 3 110 6.73e-15 72.0
Msa0740640 AT3G56580.3 34.109 129 50 5 6 131 7 103 3.26e-11 61.6
Msa0740640 AT3G56580.1 34.109 129 50 5 6 131 7 103 3.26e-11 61.6
Msa0740640 AT3G56580.2 34.109 129 50 5 6 131 7 103 3.26e-11 61.6

Find 55 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACAATAGGTTTGGGCTTA+TGG 0.144953 5_1:-59682667 Msa0740640:CDS
AGAAAGGAGGTTGGAGGTTT+GGG 0.160971 5_1:+59682020 None:intergenic
GAGAAAGGAGGTTGGAGGTT+TGG 0.278945 5_1:+59682019 None:intergenic
TCCCAGTTCCTGAACAGGGC+TGG 0.287756 5_1:-59682566 Msa0740640:CDS
GGCTGGGGCGTTTATAGTTC+TGG 0.293414 5_1:-59682549 Msa0740640:CDS
CTCCCTCTAACATCAAAGTT+TGG 0.296005 5_1:+59682600 None:intergenic
GTATTTCATGGTCAAGTTCC+TGG 0.296498 5_1:-59682516 Msa0740640:CDS
CCCAGTTCCTGAACAGGGCT+GGG 0.305104 5_1:-59682565 Msa0740640:CDS
TTCTGTCCCAGTTCCTGAAC+AGG 0.322724 5_1:-59682571 Msa0740640:CDS
GGAAAATTGCCTGGGTTGAT+TGG 0.335016 5_1:+59681982 None:intergenic
CCCCAGCCCTGTTCAGGAAC+TGG 0.343591 5_1:+59682564 None:intergenic
ACCTGCGGGAGCTCTGAAAA+AGG 0.359386 5_1:-59681899 Msa0740640:CDS
TAAACGCCCCAGCCCTGTTC+AGG 0.367352 5_1:+59682558 None:intergenic
AGAGGTTCTGACAATAGGTT+TGG 0.376287 5_1:-59682675 Msa0740640:CDS
CACCCAAACTTTGATGTTAG+AGG 0.383978 5_1:-59682603 Msa0740640:CDS
TCTCTCCCTTCAAGCACAAT+TGG 0.421897 5_1:+59682846 None:intergenic
TCCCTCTAACATCAAAGTTT+GGG 0.425458 5_1:+59682601 None:intergenic
GAATTCTATTTGTTTGAGAA+AGG 0.433918 5_1:+59682004 None:intergenic
CCCAGCCCTGTTCAGGAACT+GGG 0.453761 5_1:+59682565 None:intergenic
GGCACAGAGGTTCTGACAAT+AGG 0.463327 5_1:-59682680 Msa0740640:CDS
TTCATGAGGCATAGAATGGC+TGG 0.476150 5_1:-59682630 Msa0740640:CDS
GAGGTTCTGACAATAGGTTT+GGG 0.480899 5_1:-59682674 Msa0740640:CDS
TGTATAGCATCAAATAAGTC+AGG 0.495328 5_1:+59682714 None:intergenic
AGGATAATAGGAAAATTGCC+TGG 0.495882 5_1:+59681973 None:intergenic
TAATTTCATGAGGCATAGAA+TGG 0.500689 5_1:-59682634 Msa0740640:CDS
ATTTGTTTGAGAAAGGAGGT+TGG 0.509656 5_1:+59682011 None:intergenic
TTCTATTTGTTTGAGAAAGG+AGG 0.514019 5_1:+59682007 None:intergenic
ACAAATCCCTCATCACAGTA+AGG 0.515163 5_1:+59682813 None:intergenic
CCAGTTCCTGAACAGGGCTG+GGG 0.517490 5_1:-59682564 Msa0740640:CDS
GAAAGGAGGTTGGAGGTTTG+GGG 0.522483 5_1:+59682021 None:intergenic
CTCTCCCGAGCGTGATGGAA+AGG 0.532737 5_1:+59682749 None:intergenic
AAATACCTTTCCATCACGCT+CGG 0.536583 5_1:-59682754 Msa0740640:CDS
ATTAAGAAGAATAGATTCGA+TGG 0.544439 5_1:-59681932 Msa0740640:CDS
GTTTGCCCTTACTGTGATGA+GGG 0.546875 5_1:-59682819 Msa0740640:CDS
AGTCGGCCAATTGTGCTTGA+AGG 0.556833 5_1:-59682852 Msa0740640:CDS
GTTGAAGAAATAATGTCAAG+TGG 0.558708 5_1:-59682900 None:intergenic
TGTTTGAGAAAGGAGGTTGG+AGG 0.559216 5_1:+59682014 None:intergenic
ACCCAAACTTTGATGTTAGA+GGG 0.565011 5_1:-59682602 Msa0740640:CDS
GTCGGCCAATTGTGCTTGAA+GGG 0.565165 5_1:-59682851 Msa0740640:CDS
AATACCTTTCCATCACGCTC+GGG 0.577219 5_1:-59682753 Msa0740640:CDS
AAGAAGAATAGATTCGATGG+AGG 0.577274 5_1:-59681929 Msa0740640:CDS
AAAGGAGGTTGGAGGTTTGG+GGG 0.578292 5_1:+59682022 None:intergenic
CGTTTGCCCTTACTGTGATG+AGG 0.582429 5_1:-59682820 Msa0740640:CDS
TTAAACTCTCCCGAGCGTGA+TGG 0.588811 5_1:+59682744 None:intergenic
ATGGAGGAGATTATACCTGC+GGG 0.591151 5_1:-59681913 Msa0740640:CDS
TCTGTCCCAGTTCCTGAACA+GGG 0.612021 5_1:-59682570 Msa0740640:CDS
CAAATCCCTCATCACAGTAA+GGG 0.613393 5_1:+59682814 None:intergenic
GGATAATAGGAAAATTGCCT+GGG 0.614091 5_1:+59681974 None:intergenic
TGTCAAGTGGAGCAACACAT+TGG 0.641943 5_1:-59682887 Msa0740640:CDS
ATTGGTGTTATGAATGCAGT+CGG 0.644987 5_1:-59682869 Msa0740640:CDS
GATGGAGGAGATTATACCTG+CGG 0.656177 5_1:-59681914 Msa0740640:CDS
AATAGAATTCCAATCAACCC+AGG 0.658997 5_1:-59681991 Msa0740640:CDS
CAAGAAATTAACGAGATGCG+AGG 0.695840 5_1:-59682789 Msa0740640:CDS
CAAACTTTGATGTTAGAGGG+AGG 0.698975 5_1:-59682599 Msa0740640:CDS
ATGCTGTTGATAATTTCATG+AGG 0.699793 5_1:-59682644 Msa0740640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCTTCTTAATTTTTTTG+GGG + chr5_1:59682837-59682856 None:intergenic 15.0%
!!! CTATTCTTCTTAATTTTTTT+GGG + chr5_1:59682838-59682857 None:intergenic 15.0%
!!! TCTATTCTTCTTAATTTTTT+TGG + chr5_1:59682839-59682858 None:intergenic 15.0%
!!! TATTCTTCTTAATTTTTTTG+GGG + chr5_1:59682837-59682856 None:intergenic 15.0%
!!! CTATTCTTCTTAATTTTTTT+GGG + chr5_1:59682838-59682857 None:intergenic 15.0%
!!! TCTATTCTTCTTAATTTTTT+TGG + chr5_1:59682839-59682858 None:intergenic 15.0%
!!! TAGAAGGTTATTTGATTTAT+CGG + chr5_1:59682421-59682440 None:intergenic 20.0%
!!! TAGAAGGTTATTTGATTTAT+CGG + chr5_1:59682421-59682440 None:intergenic 20.0%
! TGACCATGAAATACTAAAAA+AGG + chr5_1:59682254-59682273 None:intergenic 25.0%
!! ATTTGATTTATCGGTTAACA+AGG + chr5_1:59682412-59682431 None:intergenic 25.0%
!!! TTATTTTTGGTCAGATTGTT+GGG + chr5_1:59682472-59682491 None:intergenic 25.0%
! GATATTGTTAAAATTCGAGA+AGG + chr5_1:59682573-59682592 None:intergenic 25.0%
! GAATTCTATTTGTTTGAGAA+AGG + chr5_1:59682775-59682794 None:intergenic 25.0%
! ATTAAGAAGAATAGATTCGA+TGG - chr5_1:59682844-59682863 Msa0740640:CDS 25.0%
! TGACCATGAAATACTAAAAA+AGG + chr5_1:59682254-59682273 None:intergenic 25.0%
!! ATTTGATTTATCGGTTAACA+AGG + chr5_1:59682412-59682431 None:intergenic 25.0%
!!! TTATTTTTGGTCAGATTGTT+GGG + chr5_1:59682472-59682491 None:intergenic 25.0%
! GATATTGTTAAAATTCGAGA+AGG + chr5_1:59682573-59682592 None:intergenic 25.0%
! GAATTCTATTTGTTTGAGAA+AGG + chr5_1:59682775-59682794 None:intergenic 25.0%
! ATTAAGAAGAATAGATTCGA+TGG - chr5_1:59682844-59682863 Msa0740640:CDS 25.0%
TGTATAGCATCAAATAAGTC+AGG + chr5_1:59682065-59682084 None:intergenic 30.0%
!! ATGCTGTTGATAATTTCATG+AGG - chr5_1:59682132-59682151 Msa0740640:intron 30.0%
TAATTTCATGAGGCATAGAA+TGG - chr5_1:59682142-59682161 Msa0740640:intron 30.0%
!!! GGTCCTTTTTTAGTATTTCA+TGG - chr5_1:59682248-59682267 Msa0740640:intron 30.0%
!!! CTTATTTTTGGTCAGATTGT+TGG + chr5_1:59682473-59682492 None:intergenic 30.0%
!! ACGGTCTTAACACTTATTTT+TGG + chr5_1:59682485-59682504 None:intergenic 30.0%
GTTAAAATTCGAGAAGGAAT+AGG + chr5_1:59682567-59682586 None:intergenic 30.0%
ATATTGCTCTTCTTGCTAAA+TGG + chr5_1:59682713-59682732 None:intergenic 30.0%
TTCTATTTGTTTGAGAAAGG+AGG + chr5_1:59682772-59682791 None:intergenic 30.0%
!!! TTCTTAATTTTTTTGGGGTG+GGG + chr5_1:59682832-59682851 None:intergenic 30.0%
!!! CTTCTTAATTTTTTTGGGGT+GGG + chr5_1:59682833-59682852 None:intergenic 30.0%
!!! TCTTCTTAATTTTTTTGGGG+TGG + chr5_1:59682834-59682853 None:intergenic 30.0%
TGTATAGCATCAAATAAGTC+AGG + chr5_1:59682065-59682084 None:intergenic 30.0%
!! ATGCTGTTGATAATTTCATG+AGG - chr5_1:59682132-59682151 Msa0740640:intron 30.0%
TAATTTCATGAGGCATAGAA+TGG - chr5_1:59682142-59682161 Msa0740640:intron 30.0%
!!! GGTCCTTTTTTAGTATTTCA+TGG - chr5_1:59682248-59682267 Msa0740640:intron 30.0%
!!! CTTATTTTTGGTCAGATTGT+TGG + chr5_1:59682473-59682492 None:intergenic 30.0%
!! ACGGTCTTAACACTTATTTT+TGG + chr5_1:59682485-59682504 None:intergenic 30.0%
GTTAAAATTCGAGAAGGAAT+AGG + chr5_1:59682567-59682586 None:intergenic 30.0%
ATATTGCTCTTCTTGCTAAA+TGG + chr5_1:59682713-59682732 None:intergenic 30.0%
TTCTATTTGTTTGAGAAAGG+AGG + chr5_1:59682772-59682791 None:intergenic 30.0%
!!! TTCTTAATTTTTTTGGGGTG+GGG + chr5_1:59682832-59682851 None:intergenic 30.0%
!!! CTTCTTAATTTTTTTGGGGT+GGG + chr5_1:59682833-59682852 None:intergenic 30.0%
!!! TCTTCTTAATTTTTTTGGGG+TGG + chr5_1:59682834-59682853 None:intergenic 30.0%
!! ATTGGTGTTATGAATGCAGT+CGG - chr5_1:59681907-59681926 Msa0740640:CDS 35.0%
! TGATGCTATACATGCTTTTG+TGG - chr5_1:59682073-59682092 Msa0740640:intron 35.0%
! GATGCTATACATGCTTTTGT+GGG - chr5_1:59682074-59682093 Msa0740640:intron 35.0%
! ATGCTATACATGCTTTTGTG+GGG - chr5_1:59682075-59682094 Msa0740640:intron 35.0%
ACCCAAACTTTGATGTTAGA+GGG - chr5_1:59682174-59682193 Msa0740640:intron 35.0%
TCCCTCTAACATCAAAGTTT+GGG + chr5_1:59682178-59682197 None:intergenic 35.0%
ATCGGTTAACAAGGATTTGA+CGG + chr5_1:59682403-59682422 None:intergenic 35.0%
CTTCTAAATCTCACCATCAA+CGG - chr5_1:59682435-59682454 Msa0740640:intron 35.0%
ATTTCTACTCGTCTAGGTAA+CGG + chr5_1:59682504-59682523 None:intergenic 35.0%
GTTAACATTTCTACTCGTCT+AGG + chr5_1:59682510-59682529 None:intergenic 35.0%
!! AAGGTCTTATTGTCTCGTTA+TGG + chr5_1:59682651-59682670 None:intergenic 35.0%
! TTGGAGATGTTTAGTGGATA+GGG + chr5_1:59682688-59682707 None:intergenic 35.0%
ATTTGTTTGAGAAAGGAGGT+TGG + chr5_1:59682768-59682787 None:intergenic 35.0%
AATAGAATTCCAATCAACCC+AGG - chr5_1:59682785-59682804 Msa0740640:CDS 35.0%
GGATAATAGGAAAATTGCCT+GGG + chr5_1:59682805-59682824 None:intergenic 35.0%
AGGATAATAGGAAAATTGCC+TGG + chr5_1:59682806-59682825 None:intergenic 35.0%
!!! TCTTAATTTTTTTGGGGTGG+GGG + chr5_1:59682831-59682850 None:intergenic 35.0%
AAGAAGAATAGATTCGATGG+AGG - chr5_1:59682847-59682866 Msa0740640:CDS 35.0%
!! ATTGGTGTTATGAATGCAGT+CGG - chr5_1:59681907-59681926 Msa0740640:CDS 35.0%
! TGATGCTATACATGCTTTTG+TGG - chr5_1:59682073-59682092 Msa0740640:intron 35.0%
! GATGCTATACATGCTTTTGT+GGG - chr5_1:59682074-59682093 Msa0740640:intron 35.0%
! ATGCTATACATGCTTTTGTG+GGG - chr5_1:59682075-59682094 Msa0740640:intron 35.0%
ACCCAAACTTTGATGTTAGA+GGG - chr5_1:59682174-59682193 Msa0740640:intron 35.0%
TCCCTCTAACATCAAAGTTT+GGG + chr5_1:59682178-59682197 None:intergenic 35.0%
ATCGGTTAACAAGGATTTGA+CGG + chr5_1:59682403-59682422 None:intergenic 35.0%
CTTCTAAATCTCACCATCAA+CGG - chr5_1:59682435-59682454 Msa0740640:intron 35.0%
ATTTCTACTCGTCTAGGTAA+CGG + chr5_1:59682504-59682523 None:intergenic 35.0%
GTTAACATTTCTACTCGTCT+AGG + chr5_1:59682510-59682529 None:intergenic 35.0%
!! AAGGTCTTATTGTCTCGTTA+TGG + chr5_1:59682651-59682670 None:intergenic 35.0%
! TTGGAGATGTTTAGTGGATA+GGG + chr5_1:59682688-59682707 None:intergenic 35.0%
ATTTGTTTGAGAAAGGAGGT+TGG + chr5_1:59682768-59682787 None:intergenic 35.0%
AATAGAATTCCAATCAACCC+AGG - chr5_1:59682785-59682804 Msa0740640:CDS 35.0%
GGATAATAGGAAAATTGCCT+GGG + chr5_1:59682805-59682824 None:intergenic 35.0%
AGGATAATAGGAAAATTGCC+TGG + chr5_1:59682806-59682825 None:intergenic 35.0%
!!! TCTTAATTTTTTTGGGGTGG+GGG + chr5_1:59682831-59682850 None:intergenic 35.0%
AAGAAGAATAGATTCGATGG+AGG - chr5_1:59682847-59682866 Msa0740640:CDS 35.0%
CAAATCCCTCATCACAGTAA+GGG + chr5_1:59681965-59681984 None:intergenic 40.0%
ACAAATCCCTCATCACAGTA+AGG + chr5_1:59681966-59681985 None:intergenic 40.0%
CAAGAAATTAACGAGATGCG+AGG - chr5_1:59681987-59682006 Msa0740640:CDS 40.0%
!!! CGTGATGGAAAGGTATTTTG+AGG + chr5_1:59682020-59682039 None:intergenic 40.0%
AAATACCTTTCCATCACGCT+CGG - chr5_1:59682022-59682041 Msa0740640:CDS 40.0%
! AGAGGTTCTGACAATAGGTT+TGG - chr5_1:59682101-59682120 Msa0740640:intron 40.0%
! GAGGTTCTGACAATAGGTTT+GGG - chr5_1:59682102-59682121 Msa0740640:intron 40.0%
TGACAATAGGTTTGGGCTTA+TGG - chr5_1:59682109-59682128 Msa0740640:intron 40.0%
CACCCAAACTTTGATGTTAG+AGG - chr5_1:59682173-59682192 Msa0740640:intron 40.0%
CTCCCTCTAACATCAAAGTT+TGG + chr5_1:59682179-59682198 None:intergenic 40.0%
CAAACTTTGATGTTAGAGGG+AGG - chr5_1:59682177-59682196 Msa0740640:intron 40.0%
GTATTTCATGGTCAAGTTCC+TGG - chr5_1:59682260-59682279 Msa0740640:intron 40.0%
! NNATTAGGCAAGGTTAGTCC+AGG + chr5_1:59682281-59682300 None:intergenic 40.0%
!! CGTTGATGGTGAGATTTAGA+AGG + chr5_1:59682437-59682456 None:intergenic 40.0%
! TTTTGGTCAGATTGTTGGGT+GGG + chr5_1:59682468-59682487 None:intergenic 40.0%
!! TTTTTGGTCAGATTGTTGGG+TGG + chr5_1:59682469-59682488 None:intergenic 40.0%
AATTCGAGAAGGAATAGGTG+TGG + chr5_1:59682562-59682581 None:intergenic 40.0%
CTTATTGTCTCGTTATGGTG+AGG + chr5_1:59682646-59682665 None:intergenic 40.0%
! GATGTTTAGTGGATAGGGAA+GGG + chr5_1:59682683-59682702 None:intergenic 40.0%
! AGATGTTTAGTGGATAGGGA+AGG + chr5_1:59682684-59682703 None:intergenic 40.0%
! GTTGGAGATGTTTAGTGGAT+AGG + chr5_1:59682689-59682708 None:intergenic 40.0%
! ATGGTGTTGGAGATGTTTAG+TGG + chr5_1:59682694-59682713 None:intergenic 40.0%
CTCTTCTTGCTAAATGGTGT+TGG + chr5_1:59682707-59682726 None:intergenic 40.0%
CAAATCCCTCATCACAGTAA+GGG + chr5_1:59681965-59681984 None:intergenic 40.0%
ACAAATCCCTCATCACAGTA+AGG + chr5_1:59681966-59681985 None:intergenic 40.0%
CAAGAAATTAACGAGATGCG+AGG - chr5_1:59681987-59682006 Msa0740640:CDS 40.0%
!!! CGTGATGGAAAGGTATTTTG+AGG + chr5_1:59682020-59682039 None:intergenic 40.0%
AAATACCTTTCCATCACGCT+CGG - chr5_1:59682022-59682041 Msa0740640:CDS 40.0%
! AGAGGTTCTGACAATAGGTT+TGG - chr5_1:59682101-59682120 Msa0740640:intron 40.0%
! GAGGTTCTGACAATAGGTTT+GGG - chr5_1:59682102-59682121 Msa0740640:intron 40.0%
TGACAATAGGTTTGGGCTTA+TGG - chr5_1:59682109-59682128 Msa0740640:intron 40.0%
CACCCAAACTTTGATGTTAG+AGG - chr5_1:59682173-59682192 Msa0740640:intron 40.0%
CTCCCTCTAACATCAAAGTT+TGG + chr5_1:59682179-59682198 None:intergenic 40.0%
CAAACTTTGATGTTAGAGGG+AGG - chr5_1:59682177-59682196 Msa0740640:intron 40.0%
GTATTTCATGGTCAAGTTCC+TGG - chr5_1:59682260-59682279 Msa0740640:intron 40.0%
! NNATTAGGCAAGGTTAGTCC+AGG + chr5_1:59682281-59682300 None:intergenic 40.0%
!! CGTTGATGGTGAGATTTAGA+AGG + chr5_1:59682437-59682456 None:intergenic 40.0%
! TTTTGGTCAGATTGTTGGGT+GGG + chr5_1:59682468-59682487 None:intergenic 40.0%
!! TTTTTGGTCAGATTGTTGGG+TGG + chr5_1:59682469-59682488 None:intergenic 40.0%
AATTCGAGAAGGAATAGGTG+TGG + chr5_1:59682562-59682581 None:intergenic 40.0%
CTTATTGTCTCGTTATGGTG+AGG + chr5_1:59682646-59682665 None:intergenic 40.0%
! GATGTTTAGTGGATAGGGAA+GGG + chr5_1:59682683-59682702 None:intergenic 40.0%
! AGATGTTTAGTGGATAGGGA+AGG + chr5_1:59682684-59682703 None:intergenic 40.0%
! GTTGGAGATGTTTAGTGGAT+AGG + chr5_1:59682689-59682708 None:intergenic 40.0%
! ATGGTGTTGGAGATGTTTAG+TGG + chr5_1:59682694-59682713 None:intergenic 40.0%
CTCTTCTTGCTAAATGGTGT+TGG + chr5_1:59682707-59682726 None:intergenic 40.0%
TGTCAAGTGGAGCAACACAT+TGG - chr5_1:59681889-59681908 Msa0740640:CDS 45.0%
TCTCTCCCTTCAAGCACAAT+TGG + chr5_1:59681933-59681952 None:intergenic 45.0%
GTTTGCCCTTACTGTGATGA+GGG - chr5_1:59681957-59681976 Msa0740640:CDS 45.0%
AATACCTTTCCATCACGCTC+GGG - chr5_1:59682023-59682042 Msa0740640:CDS 45.0%
TTCATGAGGCATAGAATGGC+TGG - chr5_1:59682146-59682165 Msa0740640:intron 45.0%
TTTGGTCAGATTGTTGGGTG+GGG + chr5_1:59682467-59682486 None:intergenic 45.0%
!! TAGGTGTTGAAGGTGGAAGT+TGG + chr5_1:59682539-59682558 None:intergenic 45.0%
!! ATAGGTGTGGTAGGTGTTGA+AGG + chr5_1:59682549-59682568 None:intergenic 45.0%
TAGGGAAGGGTTGTGGTTTA+AGG + chr5_1:59682670-59682689 None:intergenic 45.0%
AGAAAGGAGGTTGGAGGTTT+GGG + chr5_1:59682759-59682778 None:intergenic 45.0%
TGTTTGAGAAAGGAGGTTGG+AGG + chr5_1:59682765-59682784 None:intergenic 45.0%
!! GGAAAATTGCCTGGGTTGAT+TGG + chr5_1:59682797-59682816 None:intergenic 45.0%
GATGGAGGAGATTATACCTG+CGG - chr5_1:59682862-59682881 Msa0740640:CDS 45.0%
ATGGAGGAGATTATACCTGC+GGG - chr5_1:59682863-59682882 Msa0740640:CDS 45.0%
!! GGGAGCTCTGAAAAAGGAAA+GGG - chr5_1:59682883-59682902 Msa0740640:CDS 45.0%
TGTCAAGTGGAGCAACACAT+TGG - chr5_1:59681889-59681908 Msa0740640:CDS 45.0%
TCTCTCCCTTCAAGCACAAT+TGG + chr5_1:59681933-59681952 None:intergenic 45.0%
GTTTGCCCTTACTGTGATGA+GGG - chr5_1:59681957-59681976 Msa0740640:CDS 45.0%
AATACCTTTCCATCACGCTC+GGG - chr5_1:59682023-59682042 Msa0740640:CDS 45.0%
TTCATGAGGCATAGAATGGC+TGG - chr5_1:59682146-59682165 Msa0740640:intron 45.0%
TTTGGTCAGATTGTTGGGTG+GGG + chr5_1:59682467-59682486 None:intergenic 45.0%
!! TAGGTGTTGAAGGTGGAAGT+TGG + chr5_1:59682539-59682558 None:intergenic 45.0%
!! ATAGGTGTGGTAGGTGTTGA+AGG + chr5_1:59682549-59682568 None:intergenic 45.0%
TAGGGAAGGGTTGTGGTTTA+AGG + chr5_1:59682670-59682689 None:intergenic 45.0%
AGAAAGGAGGTTGGAGGTTT+GGG + chr5_1:59682759-59682778 None:intergenic 45.0%
TGTTTGAGAAAGGAGGTTGG+AGG + chr5_1:59682765-59682784 None:intergenic 45.0%
!! GGAAAATTGCCTGGGTTGAT+TGG + chr5_1:59682797-59682816 None:intergenic 45.0%
GATGGAGGAGATTATACCTG+CGG - chr5_1:59682862-59682881 Msa0740640:CDS 45.0%
ATGGAGGAGATTATACCTGC+GGG - chr5_1:59682863-59682882 Msa0740640:CDS 45.0%
!! GGGAGCTCTGAAAAAGGAAA+GGG - chr5_1:59682883-59682902 Msa0740640:CDS 45.0%
AGTCGGCCAATTGTGCTTGA+AGG - chr5_1:59681924-59681943 Msa0740640:CDS 50.0%
GTCGGCCAATTGTGCTTGAA+GGG - chr5_1:59681925-59681944 Msa0740640:CDS 50.0%
CGTTTGCCCTTACTGTGATG+AGG - chr5_1:59681956-59681975 Msa0740640:CDS 50.0%
TTAAACTCTCCCGAGCGTGA+TGG + chr5_1:59682035-59682054 None:intergenic 50.0%
! GGCACAGAGGTTCTGACAAT+AGG - chr5_1:59682096-59682115 Msa0740640:intron 50.0%
TTCTGTCCCAGTTCCTGAAC+AGG - chr5_1:59682205-59682224 Msa0740640:intron 50.0%
TCTGTCCCAGTTCCTGAACA+GGG - chr5_1:59682206-59682225 Msa0740640:intron 50.0%
CGAGAAGGAATAGGTGTGGT+AGG + chr5_1:59682558-59682577 None:intergenic 50.0%
CTTAGAGAGGGAGGTAGGTT+GGG + chr5_1:59682612-59682631 None:intergenic 50.0%
CTCGTTATGGTGAGGAGAGA+GGG + chr5_1:59682638-59682657 None:intergenic 50.0%
TCTCGTTATGGTGAGGAGAG+AGG + chr5_1:59682639-59682658 None:intergenic 50.0%
! TAGTGGATAGGGAAGGGTTG+TGG + chr5_1:59682677-59682696 None:intergenic 50.0%
AAAGGAGGTTGGAGGTTTGG+GGG + chr5_1:59682757-59682776 None:intergenic 50.0%
GAAAGGAGGTTGGAGGTTTG+GGG + chr5_1:59682758-59682777 None:intergenic 50.0%
GAGAAAGGAGGTTGGAGGTT+TGG + chr5_1:59682760-59682779 None:intergenic 50.0%
!!! ATTTTTTTGGGGTGGGGGTG+AGG + chr5_1:59682826-59682845 None:intergenic 50.0%
!! CGGGAGCTCTGAAAAAGGAA+AGG - chr5_1:59682882-59682901 Msa0740640:CDS 50.0%
AGTCGGCCAATTGTGCTTGA+AGG - chr5_1:59681924-59681943 Msa0740640:CDS 50.0%
GTCGGCCAATTGTGCTTGAA+GGG - chr5_1:59681925-59681944 Msa0740640:CDS 50.0%
CGTTTGCCCTTACTGTGATG+AGG - chr5_1:59681956-59681975 Msa0740640:CDS 50.0%
TTAAACTCTCCCGAGCGTGA+TGG + chr5_1:59682035-59682054 None:intergenic 50.0%
! GGCACAGAGGTTCTGACAAT+AGG - chr5_1:59682096-59682115 Msa0740640:intron 50.0%
TTCTGTCCCAGTTCCTGAAC+AGG - chr5_1:59682205-59682224 Msa0740640:intron 50.0%
TCTGTCCCAGTTCCTGAACA+GGG - chr5_1:59682206-59682225 Msa0740640:intron 50.0%
CGAGAAGGAATAGGTGTGGT+AGG + chr5_1:59682558-59682577 None:intergenic 50.0%
CTTAGAGAGGGAGGTAGGTT+GGG + chr5_1:59682612-59682631 None:intergenic 50.0%
CTCGTTATGGTGAGGAGAGA+GGG + chr5_1:59682638-59682657 None:intergenic 50.0%
TCTCGTTATGGTGAGGAGAG+AGG + chr5_1:59682639-59682658 None:intergenic 50.0%
! TAGTGGATAGGGAAGGGTTG+TGG + chr5_1:59682677-59682696 None:intergenic 50.0%
AAAGGAGGTTGGAGGTTTGG+GGG + chr5_1:59682757-59682776 None:intergenic 50.0%
GAAAGGAGGTTGGAGGTTTG+GGG + chr5_1:59682758-59682777 None:intergenic 50.0%
GAGAAAGGAGGTTGGAGGTT+TGG + chr5_1:59682760-59682779 None:intergenic 50.0%
!!! ATTTTTTTGGGGTGGGGGTG+AGG + chr5_1:59682826-59682845 None:intergenic 50.0%
!! CGGGAGCTCTGAAAAAGGAA+AGG - chr5_1:59682882-59682901 Msa0740640:CDS 50.0%
! CATGCTTTTGTGGGGCACAG+AGG - chr5_1:59682083-59682102 Msa0740640:intron 55.0%
! GGCTGGGGCGTTTATAGTTC+TGG - chr5_1:59682227-59682246 Msa0740640:intron 55.0%
GTCAGATTGTTGGGTGGGGA+CGG + chr5_1:59682463-59682482 None:intergenic 55.0%
!! GGTGTGGTAGGTGTTGAAGG+TGG + chr5_1:59682546-59682565 None:intergenic 55.0%
! AGAGGGAGGTAGGTTGGGAT+CGG + chr5_1:59682607-59682626 None:intergenic 55.0%
GCTTAGAGAGGGAGGTAGGT+TGG + chr5_1:59682613-59682632 None:intergenic 55.0%
GTTATGGTGAGGAGAGAGGG+CGG + chr5_1:59682635-59682654 None:intergenic 55.0%
AGGTTGGAGGTTTGGGGGTA+AGG + chr5_1:59682752-59682771 None:intergenic 55.0%
!! ACCTGCGGGAGCTCTGAAAA+AGG - chr5_1:59682877-59682896 Msa0740640:CDS 55.0%
!!! TCCTTTTTCAGAGCTCCCGC+AGG + chr5_1:59682881-59682900 None:intergenic 55.0%
! CATGCTTTTGTGGGGCACAG+AGG - chr5_1:59682083-59682102 Msa0740640:intron 55.0%
! GGCTGGGGCGTTTATAGTTC+TGG - chr5_1:59682227-59682246 Msa0740640:intron 55.0%
GTCAGATTGTTGGGTGGGGA+CGG + chr5_1:59682463-59682482 None:intergenic 55.0%
!! GGTGTGGTAGGTGTTGAAGG+TGG + chr5_1:59682546-59682565 None:intergenic 55.0%
! AGAGGGAGGTAGGTTGGGAT+CGG + chr5_1:59682607-59682626 None:intergenic 55.0%
GCTTAGAGAGGGAGGTAGGT+TGG + chr5_1:59682613-59682632 None:intergenic 55.0%
GTTATGGTGAGGAGAGAGGG+CGG + chr5_1:59682635-59682654 None:intergenic 55.0%
AGGTTGGAGGTTTGGGGGTA+AGG + chr5_1:59682752-59682771 None:intergenic 55.0%
!! ACCTGCGGGAGCTCTGAAAA+AGG - chr5_1:59682877-59682896 Msa0740640:CDS 55.0%
!!! TCCTTTTTCAGAGCTCCCGC+AGG + chr5_1:59682881-59682900 None:intergenic 55.0%
! CTCTCCCGAGCGTGATGGAA+AGG + chr5_1:59682030-59682049 None:intergenic 60.0%
TCCCAGTTCCTGAACAGGGC+TGG - chr5_1:59682210-59682229 Msa0740640:intron 60.0%
CCCAGCCCTGTTCAGGAACT+GGG + chr5_1:59682214-59682233 None:intergenic 60.0%
CCCAGTTCCTGAACAGGGCT+GGG - chr5_1:59682211-59682230 Msa0740640:intron 60.0%
CCAGTTCCTGAACAGGGCTG+GGG - chr5_1:59682212-59682231 Msa0740640:intron 60.0%
TAAACGCCCCAGCCCTGTTC+AGG + chr5_1:59682221-59682240 None:intergenic 60.0%
! GTTGGGATCGGTGTGGTGGA+AGG + chr5_1:59682595-59682614 None:intergenic 60.0%
! GTAGGTTGGGATCGGTGTGG+TGG + chr5_1:59682599-59682618 None:intergenic 60.0%
! GAGGTAGGTTGGGATCGGTG+TGG + chr5_1:59682602-59682621 None:intergenic 60.0%
GAGAGAGGGCGGCTTAGAGA+GGG + chr5_1:59682624-59682643 None:intergenic 60.0%
GGGGTGGGGGTGAGGATAAT+AGG + chr5_1:59682818-59682837 None:intergenic 60.0%
! CTCTCCCGAGCGTGATGGAA+AGG + chr5_1:59682030-59682049 None:intergenic 60.0%
TCCCAGTTCCTGAACAGGGC+TGG - chr5_1:59682210-59682229 Msa0740640:intron 60.0%
CCCAGCCCTGTTCAGGAACT+GGG + chr5_1:59682214-59682233 None:intergenic 60.0%
CCCAGTTCCTGAACAGGGCT+GGG - chr5_1:59682211-59682230 Msa0740640:intron 60.0%
CCAGTTCCTGAACAGGGCTG+GGG - chr5_1:59682212-59682231 Msa0740640:intron 60.0%
TAAACGCCCCAGCCCTGTTC+AGG + chr5_1:59682221-59682240 None:intergenic 60.0%
! GTTGGGATCGGTGTGGTGGA+AGG + chr5_1:59682595-59682614 None:intergenic 60.0%
! GTAGGTTGGGATCGGTGTGG+TGG + chr5_1:59682599-59682618 None:intergenic 60.0%
! GAGGTAGGTTGGGATCGGTG+TGG + chr5_1:59682602-59682621 None:intergenic 60.0%
GAGAGAGGGCGGCTTAGAGA+GGG + chr5_1:59682624-59682643 None:intergenic 60.0%
GGGGTGGGGGTGAGGATAAT+AGG + chr5_1:59682818-59682837 None:intergenic 60.0%
CCCCAGCCCTGTTCAGGAAC+TGG + chr5_1:59682215-59682234 None:intergenic 65.0%
GGCGGCTTAGAGAGGGAGGT+AGG + chr5_1:59682617-59682636 None:intergenic 65.0%
AGAGGGCGGCTTAGAGAGGG+AGG + chr5_1:59682621-59682640 None:intergenic 65.0%
GGAGAGAGGGCGGCTTAGAG+AGG + chr5_1:59682625-59682644 None:intergenic 65.0%
CCCCAGCCCTGTTCAGGAAC+TGG + chr5_1:59682215-59682234 None:intergenic 65.0%
GGCGGCTTAGAGAGGGAGGT+AGG + chr5_1:59682617-59682636 None:intergenic 65.0%
AGAGGGCGGCTTAGAGAGGG+AGG + chr5_1:59682621-59682640 None:intergenic 65.0%
GGAGAGAGGGCGGCTTAGAG+AGG + chr5_1:59682625-59682644 None:intergenic 65.0%
!! GGTGGGGACGGTGCCGTTGA+TGG + chr5_1:59682451-59682470 None:intergenic 70.0%
!! GGTGGGGACGGTGCCGTTGA+TGG + chr5_1:59682451-59682470 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 59681888 59682910 59681888 ID=Msa0740640;Name=Msa0740640
chr5_1 mRNA 59681888 59682910 59681888 ID=Msa0740640-mRNA-1;Parent=Msa0740640;Name=Msa0740640-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.5|1|1|2|0|198
chr5_1 exon 59682507 59682910 59682507 ID=Msa0740640-mRNA-1:exon:17226;Parent=Msa0740640-mRNA-1
chr5_1 exon 59681888 59682080 59681888 ID=Msa0740640-mRNA-1:exon:17225;Parent=Msa0740640-mRNA-1
chr5_1 CDS 59682507 59682910 59682507 ID=Msa0740640-mRNA-1:cds;Parent=Msa0740640-mRNA-1
chr5_1 CDS 59681888 59682080 59681888 ID=Msa0740640-mRNA-1:cds;Parent=Msa0740640-mRNA-1
Gene Sequence

>Msa0740640

ATGTCAAGTGGAGCAACACATTGGTGTTATGAATGCAGTCGGCCAATTGTGCTTGAAGGGAGAGACATCGTTTGCCCTTACTGTGATGAGGGATTTGTACAAGAAATTAACGAGATGCGAGGCACTGCACCTCAAAATACCTTTCCATCACGCTCGGGAGAGTTTAATCAAATGCCTGACTTATTTGATGCTATACATGCTTTTGTGGGGCACAGAGGTTCTGACAATAGGTTTGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAATGCACCCAAACTTTGATGTTAGAGGGAGGTCTAGTTCTGTCCCAGTTCCTGAACAGGGCTGGGGCGTTTATAGTTCTGGTCCTTTTTTAGTATTTCATGGTCAAGTTCCTGGACTAACCTTCAAGAAGAGCAATATTAAACTCTTTAAGTCTCCTTACCCCCAAACCTCCAACCTCCTTTCTCAAACAAATAGAATTCCAATCAACCCAGGCAATTTTCCTATTATCCTCACCCCCACCCCAAAAAAATTAAGAAGAATAGATTCGATGGAGGAGATTATACCTGCGGGAGCTCTGAAAAAGGAAAGGGCGTAG

Protein sequence

>Msa0740640

MSSGATHWCYECSRPIVLEGRDIVCPYCDEGFVQEINEMRGTAPQNTFPSRSGEFNQMPDLFDAIHAFVGHRGSDNRFGLMDAVDNFMRHRMAGMHPNFDVRGRSSSVPVPEQGWGVYSSGPFLVFHGQVPGLTFKKSNIKLFKSPYPQTSNLLSQTNRIPINPGNFPIILTPTPKKLRRIDSMEEIIPAGALKKERA*