Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201250 | KEH37391.1 | 80.551 | 653 | 105 | 5 | 1 | 634 | 1 | 650 | 0.0 | 1051 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201250 | A0A072V709 | 80.551 | 653 | 105 | 5 | 1 | 634 | 1 | 650 | 0.0 | 1051 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0135820 | Msa0201250 | 0.803220 | 3.868201e-49 | -8.615850e-47 |
| Msa0141230 | Msa0201250 | 0.804921 | 1.712873e-49 | -8.615850e-47 |
| Msa0201250 | Msa0243890 | 0.828328 | 9.556743e-55 | -8.615850e-47 |
| Msa0201250 | Msa0243930 | 0.828263 | 9.905315e-55 | -8.615850e-47 |
| Msa0201250 | Msa0282550 | 0.833355 | 5.592020e-56 | -8.615850e-47 |
| Msa0201250 | Msa0282590 | 0.826829 | 2.187821e-54 | -8.615850e-47 |
| Msa0201250 | Msa0354800 | -0.817358 | 3.436454e-52 | -8.615850e-47 |
| Msa0201250 | Msa0407910 | 0.800677 | 1.288520e-48 | -8.615850e-47 |
| Msa0201250 | Msa0456200 | 0.804903 | 1.727284e-49 | -8.615850e-47 |
| Msa0201250 | Msa0627410 | 0.803131 | 4.035388e-49 | -8.615850e-47 |
| Msa0201250 | Msa0696740 | 0.804386 | 2.214589e-49 | -8.615850e-47 |
| Msa0201250 | Msa0696770 | 0.805993 | 1.020466e-49 | -8.615850e-47 |
| Msa0201250 | Msa0697060 | 0.805072 | 1.592733e-49 | -8.615850e-47 |
| Msa0201250 | Msa0777930 | 0.811718 | 6.086153e-51 | -8.615850e-47 |
| Msa0201250 | Msa0885270 | 0.803757 | 2.992760e-49 | -8.615850e-47 |
| Msa0201250 | Msa0885280 | 0.822878 | 1.871254e-53 | -8.615850e-47 |
| Msa0201250 | Msa0986780 | 0.805095 | 1.575232e-49 | -8.615850e-47 |
| Msa0201250 | Msa0990960 | 0.812126 | 4.960226e-51 | -8.615850e-47 |
| Msa0201250 | Msa1271290 | 0.814587 | 1.427883e-51 | -8.615850e-47 |
| Msa0201250 | Msa1344010 | 0.800046 | 1.731945e-48 | -8.615850e-47 |
| Msa0201250 | Msa1381940 | 0.807339 | 5.304245e-50 | -8.615850e-47 |
| Msa0201250 | Msa1424000 | 0.814330 | 1.627654e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201250 | MtrunA17_Chr2g0297681 | 77.361 | 667 | 126 | 6 | 2 | 646 | 6 | 669 | 0.0 | 1039 |
| Msa0201250 | MtrunA17_Chr2g0297691 | 76.662 | 677 | 131 | 7 | 1 | 653 | 5 | 678 | 0.0 | 1033 |
| Msa0201250 | MtrunA17_Chr2g0297651 | 76.758 | 654 | 129 | 5 | 1 | 634 | 5 | 655 | 0.0 | 1016 |
| Msa0201250 | MtrunA17_Chr2g0297481 | 80.361 | 443 | 80 | 3 | 192 | 634 | 1 | 436 | 0.0 | 718 |
| Msa0201250 | MtrunA17_Chr2g0297491 | 83.721 | 344 | 54 | 1 | 291 | 634 | 1 | 342 | 0.0 | 584 |
| Msa0201250 | MtrunA17_Chr2g0297701 | 51.953 | 512 | 235 | 5 | 124 | 634 | 33 | 534 | 0.0 | 531 |
| Msa0201250 | MtrunA17_Chr2g0297631 | 66.762 | 349 | 84 | 7 | 1 | 321 | 5 | 349 | 5.65e-142 | 436 |
| Msa0201250 | MtrunA17_Chr2g0297711 | 44.722 | 521 | 227 | 7 | 129 | 648 | 41 | 501 | 8.55e-142 | 424 |
| Msa0201250 | MtrunA17_Chr2g0297531 | 81.159 | 207 | 35 | 3 | 192 | 398 | 1 | 203 | 2.64e-111 | 333 |
| Msa0201250 | MtrunA17_Chr2g0297541 | 68.649 | 185 | 29 | 2 | 1 | 156 | 5 | 189 | 3.25e-79 | 249 |
| Msa0201250 | MtrunA17_Chr5g0410201 | 44.444 | 252 | 137 | 2 | 380 | 628 | 34 | 285 | 2.27e-62 | 210 |
| Msa0201250 | MtrunA17_Chr5g0410271 | 44.444 | 252 | 137 | 2 | 380 | 628 | 33 | 284 | 7.15e-61 | 206 |
| Msa0201250 | MtrunA17_Chr5g0443001 | 30.712 | 534 | 321 | 11 | 138 | 628 | 33 | 560 | 2.24e-60 | 212 |
| Msa0201250 | MtrunA17_Chr5g0410171 | 43.478 | 253 | 138 | 3 | 380 | 628 | 440 | 691 | 9.45e-58 | 207 |
| Msa0201250 | MtrunA17_Chr6g0457101 | 30.017 | 583 | 344 | 20 | 109 | 637 | 82 | 654 | 4.10e-57 | 205 |
| Msa0201250 | MtrunA17_Chr2g0297621 | 75.610 | 123 | 28 | 2 | 342 | 463 | 1 | 122 | 1.39e-56 | 187 |
| Msa0201250 | MtrunA17_Chr5g0410341 | 40.476 | 252 | 147 | 2 | 380 | 628 | 452 | 703 | 4.39e-53 | 194 |
| Msa0201250 | MtrunA17_Chr6g0456141 | 36.700 | 297 | 182 | 4 | 342 | 637 | 59 | 350 | 5.72e-52 | 184 |
| Msa0201250 | MtrunA17_Chr2g0297521 | 90.588 | 85 | 8 | 0 | 473 | 557 | 1 | 85 | 6.21e-48 | 162 |
| Msa0201250 | MtrunA17_Chr3g0100741 | 26.087 | 529 | 351 | 11 | 135 | 628 | 32 | 555 | 1.55e-47 | 176 |
| Msa0201250 | MtrunA17_Chr2g0297501 | 81.915 | 94 | 16 | 1 | 192 | 285 | 1 | 93 | 1.26e-46 | 159 |
| Msa0201250 | MtrunA17_Chr5g0410461 | 40.637 | 251 | 148 | 1 | 378 | 627 | 166 | 416 | 2.53e-46 | 171 |
| Msa0201250 | MtrunA17_Chr6g0456101 | 36.700 | 297 | 181 | 5 | 343 | 637 | 416 | 707 | 3.11e-46 | 175 |
| Msa0201250 | MtrunA17_Chr5g0410371 | 40.650 | 246 | 145 | 1 | 383 | 627 | 4 | 249 | 3.69e-46 | 166 |
| Msa0201250 | MtrunA17_Chr1g0211541 | 27.912 | 455 | 292 | 7 | 143 | 590 | 3 | 428 | 4.45e-45 | 168 |
| Msa0201250 | MtrunA17_Chr3g0096941 | 25.568 | 528 | 356 | 10 | 135 | 628 | 32 | 556 | 5.62e-42 | 160 |
| Msa0201250 | MtrunA17_Chr1g0211531 | 26.840 | 462 | 287 | 9 | 143 | 590 | 27 | 451 | 7.88e-42 | 159 |
| Msa0201250 | MtrunA17_Chr3g0100301 | 30.072 | 419 | 232 | 15 | 217 | 628 | 4 | 368 | 1.29e-39 | 150 |
| Msa0201250 | MtrunA17_Chr2g0286601 | 36.364 | 264 | 159 | 4 | 380 | 638 | 390 | 649 | 2.03e-39 | 154 |
| Msa0201250 | MtrunA17_Chr2g0286601 | 26.374 | 182 | 126 | 2 | 142 | 315 | 12 | 193 | 3.52e-11 | 66.6 |
| Msa0201250 | MtrunA17_Chr2g0297611 | 77.108 | 83 | 19 | 0 | 487 | 569 | 1 | 83 | 7.28e-39 | 138 |
| Msa0201250 | MtrunA17_Chr3g0098481 | 34.340 | 265 | 168 | 3 | 383 | 641 | 39 | 303 | 3.37e-38 | 144 |
| Msa0201250 | MtrunA17_Chr5g0410581 | 33.871 | 248 | 162 | 2 | 383 | 628 | 502 | 749 | 2.58e-37 | 149 |
| Msa0201250 | MtrunA17_Chr2g0284501 | 39.224 | 232 | 136 | 2 | 399 | 630 | 388 | 614 | 6.40e-37 | 147 |
| Msa0201250 | MtrunA17_Chr5g0439061 | 36.502 | 263 | 163 | 1 | 383 | 641 | 440 | 702 | 6.47e-37 | 147 |
| Msa0201250 | MtrunA17_Chr5g0410191 | 45.946 | 148 | 79 | 1 | 481 | 627 | 2 | 149 | 2.08e-35 | 132 |
| Msa0201250 | MtrunA17_Chr2g0286551 | 36.015 | 261 | 159 | 3 | 380 | 636 | 370 | 626 | 3.91e-35 | 141 |
| Msa0201250 | MtrunA17_Chr2g0286551 | 29.121 | 182 | 121 | 3 | 142 | 315 | 12 | 193 | 1.25e-12 | 71.2 |
| Msa0201250 | MtrunA17_Chr3g0098531 | 32.114 | 246 | 162 | 3 | 401 | 641 | 10 | 255 | 1.73e-31 | 124 |
| Msa0201250 | MtrunA17_Chr2g0284541 | 37.500 | 248 | 150 | 2 | 383 | 630 | 356 | 598 | 3.19e-31 | 129 |
| Msa0201250 | MtrunA17_Chr3g0102001 | 34.848 | 264 | 159 | 6 | 375 | 629 | 436 | 695 | 9.07e-31 | 128 |
| Msa0201250 | MtrunA17_Chr2g0297511 | 72.973 | 74 | 8 | 1 | 1 | 62 | 1 | 74 | 9.74e-29 | 109 |
| Msa0201250 | MtrunA17_Chr3g0098301 | 31.076 | 251 | 165 | 3 | 383 | 629 | 105 | 351 | 7.69e-27 | 113 |
| Msa0201250 | MtrunA17_Chr5g0410541 | 36.943 | 157 | 97 | 1 | 481 | 635 | 23 | 179 | 5.59e-25 | 103 |
| Msa0201250 | MtrunA17_Chr5g0439081 | 34.839 | 155 | 99 | 2 | 481 | 634 | 15 | 168 | 2.72e-24 | 101 |
| Msa0201250 | MtrunA17_Chr2g0286561 | 34.568 | 162 | 104 | 2 | 480 | 639 | 14 | 175 | 2.43e-23 | 99.0 |
| Msa0201250 | MtrunA17_Chr5g0410451 | 36.667 | 150 | 94 | 1 | 479 | 627 | 39 | 188 | 1.61e-22 | 97.1 |
| Msa0201250 | MtrunA17_Chr5g0410181 | 47.253 | 91 | 47 | 1 | 539 | 628 | 1 | 91 | 8.03e-21 | 89.0 |
| Msa0201250 | MtrunA17_Chr5g0439051 | 38.065 | 155 | 95 | 1 | 481 | 634 | 19 | 173 | 1.98e-20 | 90.5 |
| Msa0201250 | MtrunA17_Chr1g0211511 | 29.891 | 184 | 121 | 3 | 375 | 555 | 12 | 190 | 6.60e-18 | 85.5 |
| Msa0201250 | MtrunA17_Chr5g0410511 | 31.081 | 148 | 101 | 1 | 481 | 627 | 2 | 149 | 8.30e-18 | 82.4 |
| Msa0201250 | MtrunA17_Chr8g0356571 | 34.314 | 102 | 53 | 1 | 3 | 90 | 7 | 108 | 2.26e-14 | 72.0 |
| Msa0201250 | MtrunA17_Chr2g0286571 | 26.374 | 182 | 126 | 2 | 142 | 315 | 12 | 193 | 9.25e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201250 | AT5G35810.1 | 47.440 | 293 | 141 | 4 | 345 | 630 | 6 | 292 | 1.37e-81 | 262 |
| Msa0201250 | AT3G18670.2 | 31.801 | 544 | 298 | 12 | 145 | 624 | 59 | 593 | 3.29e-75 | 254 |
| Msa0201250 | AT3G18670.1 | 31.755 | 507 | 292 | 7 | 145 | 624 | 59 | 538 | 7.15e-74 | 249 |
| Msa0201250 | AT5G04690.2 | 32.403 | 466 | 275 | 10 | 206 | 633 | 148 | 611 | 2.20e-62 | 219 |
| Msa0201250 | AT5G04690.1 | 32.731 | 443 | 270 | 10 | 206 | 633 | 148 | 577 | 2.73e-62 | 218 |
| Msa0201250 | AT5G04700.1 | 32.475 | 505 | 297 | 12 | 168 | 629 | 112 | 615 | 4.19e-62 | 219 |
| Msa0201250 | AT5G04690.3 | 31.749 | 463 | 268 | 9 | 206 | 633 | 148 | 597 | 1.06e-60 | 214 |
| Msa0201250 | AT5G04680.2 | 31.134 | 485 | 286 | 11 | 201 | 637 | 12 | 496 | 2.87e-57 | 203 |
| Msa0201250 | AT5G04680.4 | 31.134 | 485 | 286 | 11 | 201 | 637 | 135 | 619 | 3.22e-56 | 202 |
| Msa0201250 | AT5G04680.3 | 30.705 | 482 | 278 | 11 | 201 | 637 | 135 | 605 | 5.06e-54 | 196 |
| Msa0201250 | AT5G04730.1 | 29.563 | 504 | 293 | 14 | 187 | 634 | 57 | 554 | 2.36e-53 | 193 |
| Msa0201250 | AT3G54065.1 | 50.000 | 168 | 77 | 1 | 467 | 627 | 8 | 175 | 1.26e-44 | 159 |
| Msa0201250 | AT5G04680.1 | 36.330 | 267 | 158 | 3 | 383 | 637 | 382 | 648 | 1.40e-43 | 167 |
| Msa0201250 | AT5G35830.1 | 44.371 | 151 | 80 | 2 | 137 | 285 | 89 | 237 | 1.04e-28 | 116 |
| Msa0201250 | AT3G54070.1 | 32.727 | 220 | 134 | 5 | 104 | 315 | 23 | 236 | 4.11e-19 | 87.8 |
| Msa0201250 | AT5G04700.2 | 27.042 | 355 | 217 | 11 | 168 | 481 | 112 | 465 | 2.95e-18 | 88.6 |
Find 116 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCTTATAATTGGTAAAA+TGG | 0.086237 | 2_1:+22332997 | None:intergenic |
| CTTAAGATCATCTGGATTTA+TGG | 0.100523 | 2_1:+22334834 | None:intergenic |
| GCTGCTGAAGTTGGAAATTT+TGG | 0.113613 | 2_1:-22331642 | Msa0201250:CDS |
| AATCCAAATATTAGCTTTAT+AGG | 0.156047 | 2_1:+22330448 | None:intergenic |
| TTTACTTGTTCTTCCTTATA+AGG | 0.172072 | 2_1:-22329939 | Msa0201250:three_prime_UTR |
| AGTCAACTTGAATTGGTTTC+TGG | 0.187623 | 2_1:-22331408 | Msa0201250:CDS |
| CCATTTCCACCTCTTATAAT+TGG | 0.191329 | 2_1:+22332989 | None:intergenic |
| TTCAATTGGTTAAATTTCTT+TGG | 0.210384 | 2_1:-22331746 | Msa0201250:CDS |
| CTGCCTATAAAGCTAATATT+TGG | 0.224134 | 2_1:-22330451 | Msa0201250:CDS |
| TTTGAATAAAACATCATTCT+TGG | 0.233931 | 2_1:-22330581 | Msa0201250:CDS |
| AAATGTGTGTCGAGTTATTA+TGG | 0.238690 | 2_1:-22331374 | Msa0201250:CDS |
| ATTCACAAGTATGCTCTAAA+TGG | 0.267756 | 2_1:-22333268 | Msa0201250:CDS |
| ACATCAAATAGGGCATATTA+AGG | 0.271630 | 2_1:-22331502 | Msa0201250:CDS |
| TTCAATCTCGTACATCAAAT+AGG | 0.285147 | 2_1:-22331513 | Msa0201250:CDS |
| TTCTGTATTGCTGCTGCTGC+TGG | 0.291713 | 2_1:-22333058 | Msa0201250:CDS |
| GTTGATGTTACATAACATTA+TGG | 0.293284 | 2_1:-22329978 | Msa0201250:three_prime_UTR |
| GTGCCCATCCAAGCTTGATA+TGG | 0.301723 | 2_1:-22331599 | Msa0201250:CDS |
| GGAGCTTTAGTCTATTTAAA+TGG | 0.305420 | 2_1:-22329917 | Msa0201250:three_prime_UTR |
| TGTATCTACACTGGCATCTA+TGG | 0.308183 | 2_1:-22332848 | Msa0201250:intron |
| TCTATTCTTGTCTCGCGTTA+TGG | 0.309263 | 2_1:-22330496 | Msa0201250:CDS |
| CCTCTTATAATTGGTAAAAT+GGG | 0.311602 | 2_1:+22332998 | None:intergenic |
| TAGACTAAAGCTCCCTTATA+AGG | 0.319093 | 2_1:+22329926 | None:intergenic |
| GAAAATATTGAAATGCAAAT+AGG | 0.329984 | 2_1:+22330338 | None:intergenic |
| TCAAAGCCACCATACTTTGA+TGG | 0.342374 | 2_1:-22335027 | Msa0201250:CDS |
| TTATGATCATTATCATTATC+TGG | 0.347314 | 2_1:+22331891 | None:intergenic |
| TTACTTGTTCTTCCTTATAA+GGG | 0.349296 | 2_1:-22329938 | Msa0201250:three_prime_UTR |
| TGCAGACTTAGCCTTCAAAA+TGG | 0.355889 | 2_1:-22332018 | Msa0201250:intron |
| ACAATTCTCTTAAGATCATC+TGG | 0.360060 | 2_1:+22334826 | None:intergenic |
| AATCTGTTGACTTCGAAGTT+TGG | 0.361609 | 2_1:-22334960 | Msa0201250:CDS |
| CTTCTCTTCAAAATGATGTA+TGG | 0.361905 | 2_1:+22332898 | None:intergenic |
| TCATTAACTCAATCAACTAT+TGG | 0.365515 | 2_1:-22330262 | Msa0201250:three_prime_UTR |
| TGCTACCATCATGCTTGTTA+TGG | 0.377755 | 2_1:+22330408 | None:intergenic |
| AATATTAATATATTATTGTA+AGG | 0.380820 | 2_1:-22330188 | Msa0201250:three_prime_UTR |
| CCAATTATAAGAGGTGGAAA+TGG | 0.381282 | 2_1:-22332989 | Msa0201250:CDS |
| GCCGGAGTTTGTTGTGATAC+TGG | 0.386816 | 2_1:+22334367 | None:intergenic |
| AACCTATGTACAAAAGTATT+GGG | 0.399981 | 2_1:+22330309 | None:intergenic |
| ACCACCGAGTCAACTTGAAT+TGG | 0.403203 | 2_1:-22331415 | Msa0201250:CDS |
| TCAATCTCGTACATCAAATA+GGG | 0.409561 | 2_1:-22331512 | Msa0201250:CDS |
| AATAGACAAGAAAATCAATA+TGG | 0.415156 | 2_1:+22330513 | None:intergenic |
| ATATTTGATGCTGCTGAAGT+TGG | 0.426249 | 2_1:-22331651 | Msa0201250:CDS |
| ATTTAGAGCATACTTGTGAA+TGG | 0.429802 | 2_1:+22333270 | None:intergenic |
| AGTATGCTCTAAATGGAAAC+TGG | 0.430517 | 2_1:-22333261 | Msa0201250:CDS |
| AAAGTATGGTGGCTTTGAAA+TGG | 0.431946 | 2_1:+22335032 | None:intergenic |
| AAACCTATGTACAAAAGTAT+TGG | 0.433272 | 2_1:+22330308 | None:intergenic |
| AAATCTGTACCATCAAAGTA+TGG | 0.435685 | 2_1:+22335018 | None:intergenic |
| ATCACTCAAGCTTTCATGTA+TGG | 0.436370 | 2_1:-22330087 | Msa0201250:three_prime_UTR |
| TGCTAACCACATTCACTTTG+TGG | 0.445871 | 2_1:-22333146 | Msa0201250:CDS |
| CAGGATTAGGCGCGTTGTAT+AGG | 0.451755 | 2_1:+22334338 | None:intergenic |
| GAGTTATTGAAATTGCTTGA+TGG | 0.465790 | 2_1:-22333121 | Msa0201250:CDS |
| TTTGATCCATTCTCAATCAC+AGG | 0.467065 | 2_1:+22334937 | None:intergenic |
| TCTATGATGCGCTTAGCTGC+TGG | 0.470173 | 2_1:+22333238 | None:intergenic |
| TTCACATCCCATATCAAGCT+TGG | 0.470869 | 2_1:+22331591 | None:intergenic |
| TAGGGGATGATCAAAGGAAA+AGG | 0.475020 | 2_1:-22333312 | Msa0201250:CDS |
| ATTTCGACAGTCATTGCAAC+CGG | 0.475205 | 2_1:-22330664 | Msa0201250:CDS |
| GCTGCTGCAGTTACTTTACC+AGG | 0.482635 | 2_1:-22330634 | Msa0201250:CDS |
| TTTAGAGCATACTTGTGAAT+GGG | 0.485602 | 2_1:+22333271 | None:intergenic |
| GTTTGGCCTGTGATTGAGAA+TGG | 0.489246 | 2_1:-22334943 | Msa0201250:CDS |
| TGCAAAGCAGCATACTGAAT+AGG | 0.493023 | 2_1:+22332959 | None:intergenic |
| TGCCCATCCAAGCTTGATAT+GGG | 0.494655 | 2_1:-22331598 | Msa0201250:CDS |
| CATCCCATATCAAGCTTGGA+TGG | 0.495164 | 2_1:+22331595 | None:intergenic |
| CAAATGAGCATAAAATACTA+AGG | 0.497970 | 2_1:-22330735 | Msa0201250:CDS |
| TTCTTTGCTTGTATCTACAC+TGG | 0.502845 | 2_1:-22332857 | Msa0201250:CDS |
| TAAGGAAGGATGCAGAGTCT+TGG | 0.502930 | 2_1:-22330717 | Msa0201250:CDS |
| CCAGAGTCATCCGTACCGCC+TGG | 0.504086 | 2_1:+22330616 | None:intergenic |
| ACACTATTGCATATTGCTGC+AGG | 0.507047 | 2_1:-22333169 | Msa0201250:CDS |
| TATGGTCAACAGAATCTGAT+TGG | 0.511142 | 2_1:-22330069 | Msa0201250:three_prime_UTR |
| AGAGAACACTTTATTGCACT+TGG | 0.513197 | 2_1:-22331451 | Msa0201250:CDS |
| CATCAAATAGGGCATATTAA+GGG | 0.516700 | 2_1:-22331501 | Msa0201250:CDS |
| AGAGACGGCTTTACATCTCT+TGG | 0.519564 | 2_1:-22331952 | Msa0201250:CDS |
| TGGTAAAGATAAGAAGATCA+TGG | 0.521912 | 2_1:-22334893 | Msa0201250:CDS |
| ATAGCATTGCAAGATATGAA+TGG | 0.523427 | 2_1:-22333091 | Msa0201250:CDS |
| TTTGTTTAGGGGATGATCAA+AGG | 0.524029 | 2_1:-22333318 | Msa0201250:intron |
| TGTCGAGTTATTATGGTTCG+AGG | 0.528854 | 2_1:-22331367 | Msa0201250:intron |
| AAAATGCTGCCATTACAAAT+GGG | 0.534307 | 2_1:-22333198 | Msa0201250:CDS |
| TGAGCATAAAATACTAAGGA+AGG | 0.537114 | 2_1:-22330731 | Msa0201250:CDS |
| AATCACATCATGATCAATCC+TGG | 0.539890 | 2_1:-22331870 | Msa0201250:intron |
| TGGAAGACTCTGTCTAAGCC+TGG | 0.540508 | 2_1:-22330242 | Msa0201250:three_prime_UTR |
| ATGGTTGTATGTTATGAAGA+AGG | 0.542261 | 2_1:+22330375 | None:intergenic |
| ATGAACGCAACGATGGTTGA+AGG | 0.545510 | 2_1:-22335060 | None:intergenic |
| GCATCAAATATTAGTTGAGA+AGG | 0.545905 | 2_1:+22331663 | None:intergenic |
| ATTCAGTATGCTGCTTTGCA+AGG | 0.548505 | 2_1:-22332956 | Msa0201250:CDS |
| CTCTTATAATTGGTAAAATG+GGG | 0.558456 | 2_1:+22332999 | None:intergenic |
| ACATACAACCATGTTCGATA+CGG | 0.559372 | 2_1:-22330364 | Msa0201250:CDS |
| CCAGGCGGTACGGATGACTC+TGG | 0.565328 | 2_1:-22330616 | Msa0201250:CDS |
| TGTAGGCCACCCATTTGTAA+TGG | 0.566752 | 2_1:+22333189 | None:intergenic |
| AGAAACACAAGAATCTTATG+TGG | 0.573053 | 2_1:-22330135 | Msa0201250:three_prime_UTR |
| CATCTCCATAACAAGCATGA+TGG | 0.578014 | 2_1:-22330413 | Msa0201250:CDS |
| TCCAGTATCACAACAAACTC+CGG | 0.580062 | 2_1:-22334368 | Msa0201250:CDS |
| GAGAATTGTAAGTTGTCAGA+CGG | 0.582701 | 2_1:-22334812 | Msa0201250:CDS |
| TACAGATTTAACTGAGTGGA+GGG | 0.592531 | 2_1:-22335004 | Msa0201250:CDS |
| ATCCCATATCAAGCTTGGAT+GGG | 0.596987 | 2_1:+22331596 | None:intergenic |
| AGTTACTTTACCAGGCGGTA+CGG | 0.597144 | 2_1:-22330626 | Msa0201250:CDS |
| TGTAAGTTGTCAGACGGCAA+AGG | 0.600283 | 2_1:-22334806 | Msa0201250:CDS |
| TGATCTATGTGATAGAGTAG+AGG | 0.626452 | 2_1:-22330211 | Msa0201250:three_prime_UTR |
| AGGTTTAGAATTGACATCGG+AGG | 0.628044 | 2_1:+22334390 | None:intergenic |
| ACTCCACCACAAAGTGAATG+TGG | 0.629255 | 2_1:+22333140 | None:intergenic |
| ATAGGAAACCGTATCGAACA+TGG | 0.630084 | 2_1:+22330356 | None:intergenic |
| GTTAATGATATCTGTAAACA+AGG | 0.630988 | 2_1:+22330277 | None:intergenic |
| GCAGCAATATGCAATAGTGT+AGG | 0.635326 | 2_1:+22333172 | None:intergenic |
| GTACAGATTTAACTGAGTGG+AGG | 0.636684 | 2_1:-22335005 | Msa0201250:CDS |
| GAAACCAATTCAAGTTGACT+CGG | 0.643739 | 2_1:+22331411 | None:intergenic |
| GCGTTGTATAGGTCTGATGC+CGG | 0.650552 | 2_1:+22334349 | None:intergenic |
| ATGGTACAGATTTAACTGAG+TGG | 0.652990 | 2_1:-22335008 | Msa0201250:CDS |
| TCTGTACCATCAAAGTATGG+TGG | 0.656672 | 2_1:+22335021 | None:intergenic |
| AACTGCAGCAGCGAACACTC+CGG | 0.662595 | 2_1:+22330645 | None:intergenic |
| ATGCTGCCATTACAAATGGG+TGG | 0.662853 | 2_1:-22333195 | Msa0201250:CDS |
| TGGAGGTTTAGAATTGACAT+CGG | 0.673204 | 2_1:+22334387 | None:intergenic |
| TAACCACATTCACTTTGTGG+TGG | 0.675145 | 2_1:-22333143 | Msa0201250:CDS |
| CAATGACATGAAGAATCCGA+TGG | 0.676145 | 2_1:+22331915 | None:intergenic |
| AAAACACTACTCATCAAAGG+AGG | 0.676865 | 2_1:-22331709 | Msa0201250:CDS |
| CTATGTACAAAAGTATTGGG+AGG | 0.681529 | 2_1:+22330312 | None:intergenic |
| ACCAATTCAAGTTGACTCGG+TGG | 0.683975 | 2_1:+22331414 | None:intergenic |
| ATGTGATGTGAATGAAGAGA+CGG | 0.687424 | 2_1:-22331967 | Msa0201250:CDS |
| AAGGAAGATACAAAATGACA+TGG | 0.688802 | 2_1:-22332937 | Msa0201250:CDS |
| GGAGTTTGTTGTGATACTGG+AGG | 0.690617 | 2_1:+22334370 | None:intergenic |
| GCTGCAGTTACTTTACCAGG+CGG | 0.769401 | 2_1:-22330631 | Msa0201250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTATTTTATTTTG+AGG | - | chr2_1:22330395-22330414 | Msa0201250:CDS | 10.0% |
| !!! | GTTTTTTTATTTTATTTTGA+GGG | - | chr2_1:22330396-22330415 | Msa0201250:CDS | 10.0% |
| !! | TATTAAGAAATACTAATATT+AGG | - | chr2_1:22331048-22331067 | Msa0201250:intron | 10.0% |
| !!! | TTATGAATTTTATTTGAATA+TGG | + | chr2_1:22331074-22331093 | None:intergenic | 10.0% |
| !! | AAATTATATTCATTTGATAT+TGG | - | chr2_1:22332700-22332719 | Msa0201250:intron | 10.0% |
| !! | TTAAATTTATTATGTAAAGT+AGG | + | chr2_1:22334045-22334064 | None:intergenic | 10.0% |
| !!! | TTACCATTTATTATTGTTTT+TGG | + | chr2_1:22330030-22330049 | None:intergenic | 15.0% |
| !!! | ATGTTATAACTATATTTTCT+CGG | - | chr2_1:22330442-22330461 | Msa0201250:CDS | 15.0% |
| !!! | ATATATATATTGTCTTTTAC+AGG | - | chr2_1:22330514-22330533 | Msa0201250:CDS | 15.0% |
| !!! | CTTTTGCTAATAAAAATTTA+AGG | - | chr2_1:22330689-22330708 | Msa0201250:CDS | 15.0% |
| !! | TAAAATATAAAGTTAGTGTA+AGG | + | chr2_1:22333098-22333117 | None:intergenic | 15.0% |
| !! | ATATCTTTATGAGTAAAAAT+GGG | - | chr2_1:22333740-22333759 | Msa0201250:intron | 15.0% |
| !! | ATAAATTTATGATGTAAAGT+AGG | + | chr2_1:22333922-22333941 | None:intergenic | 15.0% |
| !! | AACAAAAAACAATAAATGAT+AGG | + | chr2_1:22334902-22334921 | None:intergenic | 15.0% |
| !!! | TTTATTGTTTTTTGTTAAAG+TGG | - | chr2_1:22334906-22334925 | Msa0201250:CDS | 15.0% |
| !! | CTTCCAAAAACAATAATAAA+TGG | - | chr2_1:22330024-22330043 | Msa0201250:three_prime_UTR | 20.0% |
| !!! | ATTTTTGTTCAAAATCTGAT+TGG | - | chr2_1:22330196-22330215 | Msa0201250:three_prime_UTR | 20.0% |
| !! | TAATCAAAACAAAAGAGAAA+AGG | - | chr2_1:22330254-22330273 | Msa0201250:three_prime_UTR | 20.0% |
| !! | AAGAAAGAAAAAAAAAGACT+AGG | + | chr2_1:22330662-22330681 | None:intergenic | 20.0% |
| !! | CTAATAAAAATTTAAGGAGA+AGG | - | chr2_1:22330695-22330714 | Msa0201250:CDS | 20.0% |
| !! | TTAAAGATAAACATTTGACT+TGG | + | chr2_1:22330771-22330790 | None:intergenic | 20.0% |
| !! | TAAAAGAGATAGGAAAATTA+AGG | + | chr2_1:22331178-22331197 | None:intergenic | 20.0% |
| !! | TCTTCTTTAATAAAAGAGAT+AGG | + | chr2_1:22331188-22331207 | None:intergenic | 20.0% |
| !! | AGTTAATTTAGTTAATTAGC+AGG | - | chr2_1:22331315-22331334 | Msa0201250:intron | 20.0% |
| !! | GTTAATTTAGTTAATTAGCA+GGG | - | chr2_1:22331316-22331335 | Msa0201250:intron | 20.0% |
| !!! | ATTGATTTTGTCATTCAAAA+AGG | - | chr2_1:22332294-22332313 | Msa0201250:intron | 20.0% |
| !! | TAGTTACCAATTAAATAATC+TGG | - | chr2_1:22332423-22332442 | Msa0201250:intron | 20.0% |
| !! | GTATAAGCTCATAATATTAA+TGG | - | chr2_1:22332593-22332612 | Msa0201250:intron | 20.0% |
| !! | AACTGAAATAATGATTTGAT+TGG | + | chr2_1:22332742-22332761 | None:intergenic | 20.0% |
| !! | TTATGATCATTATCATTATC+TGG | + | chr2_1:22333049-22333068 | None:intergenic | 20.0% |
| !! | TTCAATTGGTTAAATTTCTT+TGG | - | chr2_1:22333191-22333210 | Msa0201250:CDS | 20.0% |
| !! | CATATCTTTATGAGTAAAAA+TGG | - | chr2_1:22333739-22333758 | Msa0201250:intron | 20.0% |
| !! | TTTGAATAAAACATCATTCT+TGG | - | chr2_1:22334356-22334375 | Msa0201250:CDS | 20.0% |
| !! | AATAGACAAGAAAATCAATA+TGG | + | chr2_1:22334427-22334446 | None:intergenic | 20.0% |
| !!! | AATCCAAATATTAGCTTTAT+AGG | + | chr2_1:22334492-22334511 | None:intergenic | 20.0% |
| !! | GAAAATATTGAAATGCAAAT+AGG | + | chr2_1:22334602-22334621 | None:intergenic | 20.0% |
| !!! | TTCAAAATCTGATTGGTTTT+TGG | - | chr2_1:22330203-22330222 | Msa0201250:three_prime_UTR | 25.0% |
| !!! | TTACATTAGCTTTGCTTATA+TGG | + | chr2_1:22330985-22331004 | None:intergenic | 25.0% |
| ! | CAAACATGCATTATTAACTT+TGG | + | chr2_1:22331107-22331126 | None:intergenic | 25.0% |
| !!! | TTTTAAAACAATCGTGTCAA+CGG | - | chr2_1:22331414-22331433 | Msa0201250:CDS | 25.0% |
| !! | TTTTACTCGTTATGACATTT+TGG | - | chr2_1:22331462-22331481 | Msa0201250:CDS | 25.0% |
| !!! | ATTTCTTTTGAGAAATGAAC+AGG | + | chr2_1:22331509-22331528 | None:intergenic | 25.0% |
| ! | CTCTTATAATTGGTAAAATG+GGG | + | chr2_1:22331941-22331960 | None:intergenic | 25.0% |
| ! | CCTCTTATAATTGGTAAAAT+GGG | + | chr2_1:22331942-22331961 | None:intergenic | 25.0% |
| ! | ACCTCTTATAATTGGTAAAA+TGG | + | chr2_1:22331943-22331962 | None:intergenic | 25.0% |
| !! | ATTTTACCAATTATAAGAGG+TGG | - | chr2_1:22331942-22331961 | Msa0201250:CDS | 25.0% |
| ! | AAATGTGCTAAAATAAGCAA+CGG | + | chr2_1:22332191-22332210 | None:intergenic | 25.0% |
| ! | TGTCATTCAAAAAGGATTAA+CGG | - | chr2_1:22332302-22332321 | Msa0201250:intron | 25.0% |
| ! | TAAGATGAAAGAAATTACAC+AGG | + | chr2_1:22332357-22332376 | None:intergenic | 25.0% |
| ! | CTATCTAGAGACTAATTTAA+TGG | + | chr2_1:22332487-22332506 | None:intergenic | 25.0% |
| !!! | TTCAAACCATTTTTAAGCTT+TGG | + | chr2_1:22332544-22332563 | None:intergenic | 25.0% |
| ! | ATTATGAGCTTATACTTACA+AGG | + | chr2_1:22332588-22332607 | None:intergenic | 25.0% |
| !!! | AAATCACATGGTTTTTCAAT+TGG | - | chr2_1:22333177-22333196 | Msa0201250:CDS | 25.0% |
| ! | TAAAAAACACTACTCATCAA+AGG | - | chr2_1:22333225-22333244 | Msa0201250:CDS | 25.0% |
| ! | TCTATGGACCAAAAAAAATA+GGG | - | chr2_1:22333832-22333851 | Msa0201250:intron | 25.0% |
| !!! | TTTTTCATCTTTATTTGTGC+TGG | + | chr2_1:22334150-22334169 | None:intergenic | 25.0% |
| ! | CAAATGAGCATAAAATACTA+AGG | - | chr2_1:22334202-22334221 | Msa0201250:intron | 25.0% |
| !!! | GATGTTTTATTCAAATAGTG+TGG | + | chr2_1:22334351-22334370 | None:intergenic | 25.0% |
| !!! | AACCTATGTACAAAAGTATT+GGG | + | chr2_1:22334631-22334650 | None:intergenic | 25.0% |
| !! | AAACCTATGTACAAAAGTAT+TGG | + | chr2_1:22334632-22334651 | None:intergenic | 25.0% |
| ! | GTTAATGATATCTGTAAACA+AGG | + | chr2_1:22334663-22334682 | None:intergenic | 25.0% |
| ! | TCATTAACTCAATCAACTAT+TGG | - | chr2_1:22334675-22334694 | Msa0201250:intron | 25.0% |
| !!! | ACATAGATCATATTTTTACC+AGG | + | chr2_1:22334716-22334735 | None:intergenic | 25.0% |
| ! | GTTGATGTTACATAACATTA+TGG | - | chr2_1:22334959-22334978 | Msa0201250:CDS | 25.0% |
| ! | TTTACTTGTTCTTCCTTATA+AGG | - | chr2_1:22334998-22335017 | Msa0201250:CDS | 25.0% |
| ! | TTACTTGTTCTTCCTTATAA+GGG | - | chr2_1:22334999-22335018 | Msa0201250:CDS | 25.0% |
| AAATCTGTACCATCAAAGTA+TGG | + | chr2_1:22329922-22329941 | None:intergenic | 30.0% | |
| TGGTAAAGATAAGAAGATCA+TGG | - | chr2_1:22330044-22330063 | Msa0201250:three_prime_UTR | 30.0% | |
| CTTAAGATCATCTGGATTTA+TGG | + | chr2_1:22330106-22330125 | None:intergenic | 30.0% | |
| ACAATTCTCTTAAGATCATC+TGG | + | chr2_1:22330114-22330133 | None:intergenic | 30.0% | |
| AACAAAAGAGAAAAGGAAAC+AGG | - | chr2_1:22330261-22330280 | Msa0201250:three_prime_UTR | 30.0% | |
| GTGCATATATTTATCCAAAG+TGG | - | chr2_1:22330358-22330377 | Msa0201250:CDS | 30.0% | |
| TTAATATATGCTAGCCACTT+TGG | + | chr2_1:22330375-22330394 | None:intergenic | 30.0% | |
| !! | AAGATAAACATTTGACTTGG+AGG | + | chr2_1:22330768-22330787 | None:intergenic | 30.0% |
| AACCACTAGATTAAACACTT+TGG | - | chr2_1:22330790-22330809 | Msa0201250:CDS | 30.0% | |
| AAGTAACTAGAAAGATGTAG+AGG | - | chr2_1:22331232-22331251 | Msa0201250:intron | 30.0% | |
| AGTGAAGATGTATGGAAATA+AGG | - | chr2_1:22331257-22331276 | Msa0201250:intron | 30.0% | |
| ATTTAGTTAATTAGCAGGGT+TGG | - | chr2_1:22331320-22331339 | Msa0201250:intron | 30.0% | |
| ! | TTTAAAACAATCGTGTCAAC+GGG | - | chr2_1:22331415-22331434 | Msa0201250:CDS | 30.0% |
| AAGGTTCAATTGCAGTTAAA+GGG | + | chr2_1:22331601-22331620 | None:intergenic | 30.0% | |
| AAAGGTTCAATTGCAGTTAA+AGG | + | chr2_1:22331602-22331621 | None:intergenic | 30.0% | |
| ! | TGCAATTGAACCTTTGTTTA+GGG | - | chr2_1:22331607-22331626 | Msa0201250:CDS | 30.0% |
| ! | TTTAGAGCATACTTGTGAAT+GGG | + | chr2_1:22331669-22331688 | None:intergenic | 30.0% |
| ! | ATTTAGAGCATACTTGTGAA+TGG | + | chr2_1:22331670-22331689 | None:intergenic | 30.0% |
| ! | ATTCACAAGTATGCTCTAAA+TGG | - | chr2_1:22331669-22331688 | Msa0201250:CDS | 30.0% |
| AAAAATGCTGCCATTACAAA+TGG | - | chr2_1:22331738-22331757 | Msa0201250:CDS | 30.0% | |
| AAAATGCTGCCATTACAAAT+GGG | - | chr2_1:22331739-22331758 | Msa0201250:CDS | 30.0% | |
| GAGTTATTGAAATTGCTTGA+TGG | - | chr2_1:22331816-22331835 | Msa0201250:intron | 30.0% | |
| ATAGCATTGCAAGATATGAA+TGG | - | chr2_1:22331846-22331865 | Msa0201250:intron | 30.0% | |
| ! | CCCATTTTACCAATTATAAG+AGG | - | chr2_1:22331939-22331958 | Msa0201250:CDS | 30.0% |
| AAGGAAGATACAAAATGACA+TGG | - | chr2_1:22332000-22332019 | Msa0201250:CDS | 30.0% | |
| CTTCTCTTCAAAATGATGTA+TGG | + | chr2_1:22332042-22332061 | None:intergenic | 30.0% | |
| !! | ACATCATTTTGAAGAGAAGA+AGG | - | chr2_1:22332043-22332062 | Msa0201250:intron | 30.0% |
| AATGTGCTAAAATAAGCAAC+GGG | + | chr2_1:22332190-22332209 | None:intergenic | 30.0% | |
| ! | GGTCTTTAAATCGATTCAAT+GGG | - | chr2_1:22332236-22332255 | Msa0201250:intron | 30.0% |
| AATATTGAACATTGCAAGTG+TGG | - | chr2_1:22332377-22332396 | Msa0201250:intron | 30.0% | |
| TAGGGACCAGATTATTTAAT+TGG | + | chr2_1:22332432-22332451 | None:intergenic | 30.0% | |
| TTTCAGTTGTAAGTATGTTC+AGG | - | chr2_1:22332754-22332773 | Msa0201250:intron | 30.0% | |
| ATCACTCAAAACTTTGATGA+CGG | + | chr2_1:22332814-22332833 | None:intergenic | 30.0% | |
| ! | ATTGTCTCTTACCATTTTGA+AGG | + | chr2_1:22332933-22332952 | None:intergenic | 30.0% |
| ! | GAAAAACCATGTGATTTTTC+AGG | + | chr2_1:22333174-22333193 | None:intergenic | 30.0% |
| !!! | GTAGTGTTTTTTAAGAATCG+TGG | + | chr2_1:22333218-22333237 | None:intergenic | 30.0% |
| GCATCAAATATTAGTTGAGA+AGG | + | chr2_1:22333277-22333296 | None:intergenic | 30.0% | |
| TTCAATCTCGTACATCAAAT+AGG | - | chr2_1:22333424-22333443 | Msa0201250:intron | 30.0% | |
| TCAATCTCGTACATCAAATA+GGG | - | chr2_1:22333425-22333444 | Msa0201250:intron | 30.0% | |
| ACATCAAATAGGGCATATTA+AGG | - | chr2_1:22333435-22333454 | Msa0201250:intron | 30.0% | |
| CATCAAATAGGGCATATTAA+GGG | - | chr2_1:22333436-22333455 | Msa0201250:intron | 30.0% | |
| AAATGTGTGTCGAGTTATTA+TGG | - | chr2_1:22333563-22333582 | Msa0201250:intron | 30.0% | |
| ATGCAAAGACATGAGATAAA+AGG | + | chr2_1:22333614-22333633 | None:intergenic | 30.0% | |
| ! | TAGACATATTATAAGTACCG+AGG | + | chr2_1:22333694-22333713 | None:intergenic | 30.0% |
| GTCTATGGACCAAAAAAAAT+AGG | - | chr2_1:22333831-22333850 | Msa0201250:intron | 30.0% | |
| ACTAATTTGACAACTCTACA+AGG | - | chr2_1:22333867-22333886 | Msa0201250:intron | 30.0% | |
| TCTAATTTGACAGATCTACA+AGG | - | chr2_1:22333991-22334010 | Msa0201250:intron | 30.0% | |
| GATAATTATGTATGCACACA+AGG | + | chr2_1:22334023-22334042 | None:intergenic | 30.0% | |
| TGAGCATAAAATACTAAGGA+AGG | - | chr2_1:22334206-22334225 | Msa0201250:intron | 30.0% | |
| CTGCCTATAAAGCTAATATT+TGG | - | chr2_1:22334486-22334505 | Msa0201250:intron | 30.0% | |
| ATGGTTGTATGTTATGAAGA+AGG | + | chr2_1:22334565-22334584 | None:intergenic | 30.0% | |
| AGAAACACAAGAATCTTATG+TGG | - | chr2_1:22334802-22334821 | Msa0201250:CDS | 30.0% | |
| ! | GGAGCTTTAGTCTATTTAAA+TGG | - | chr2_1:22335020-22335039 | Msa0201250:CDS | 30.0% |
| !! | AAAGTATGGTGGCTTTGAAA+TGG | + | chr2_1:22329908-22329927 | None:intergenic | 35.0% |
| ATGGTACAGATTTAACTGAG+TGG | - | chr2_1:22329929-22329948 | Msa0201250:three_prime_UTR | 35.0% | |
| TACAGATTTAACTGAGTGGA+GGG | - | chr2_1:22329933-22329952 | Msa0201250:three_prime_UTR | 35.0% | |
| !! | AATCTGTTGACTTCGAAGTT+TGG | - | chr2_1:22329977-22329996 | Msa0201250:three_prime_UTR | 35.0% |
| TTTGATCCATTCTCAATCAC+AGG | + | chr2_1:22330003-22330022 | None:intergenic | 35.0% | |
| GAGAATTGTAAGTTGTCAGA+CGG | - | chr2_1:22330125-22330144 | Msa0201250:three_prime_UTR | 35.0% | |
| ! | TGGAGGTTTAGAATTGACAT+CGG | + | chr2_1:22330553-22330572 | None:intergenic | 35.0% |
| ! | TCCTCTAAAAACTCAGGATT+AGG | + | chr2_1:22330615-22330634 | None:intergenic | 35.0% |
| ! | CTTGTTTCCTCTAAAAACTC+AGG | + | chr2_1:22330621-22330640 | None:intergenic | 35.0% |
| !! | AAACATTTGACTTGGAGGTT+CGG | + | chr2_1:22330763-22330782 | None:intergenic | 35.0% |
| ! | CTCCAAAGTGTTTAATCTAG+TGG | + | chr2_1:22330795-22330814 | None:intergenic | 35.0% |
| TGGAAATAAGGTTGAGATTG+TGG | - | chr2_1:22331269-22331288 | Msa0201250:intron | 35.0% | |
| GGAAATAAGGTTGAGATTGT+GGG | - | chr2_1:22331270-22331289 | Msa0201250:intron | 35.0% | |
| ATTGTACATGTAGTGATGTC+AGG | - | chr2_1:22331545-22331564 | Msa0201250:CDS | 35.0% | |
| ! | TCAGGTGGGTTTAATGTTAA+CGG | - | chr2_1:22331563-22331582 | Msa0201250:CDS | 35.0% |
| ! | CTGCAATTGAACCTTTGTTT+AGG | - | chr2_1:22331606-22331625 | Msa0201250:CDS | 35.0% |
| ! | GCAATTGAACCTTTGTTTAG+GGG | - | chr2_1:22331608-22331627 | Msa0201250:CDS | 35.0% |
| TTTGATCATCCCCTAAACAA+AGG | + | chr2_1:22331620-22331639 | None:intergenic | 35.0% | |
| TTTGTTTAGGGGATGATCAA+AGG | - | chr2_1:22331619-22331638 | Msa0201250:CDS | 35.0% | |
| ! | AGTATGCTCTAAATGGAAAC+TGG | - | chr2_1:22331676-22331695 | Msa0201250:CDS | 35.0% |
| CCATTTCCACCTCTTATAAT+TGG | + | chr2_1:22331951-22331970 | None:intergenic | 35.0% | |
| CCAATTATAAGAGGTGGAAA+TGG | - | chr2_1:22331948-22331967 | Msa0201250:CDS | 35.0% | |
| !! | ATTTTGAAGAGAAGAAGGAC+TGG | - | chr2_1:22332048-22332067 | Msa0201250:intron | 35.0% |
| !! | TTTTGAAGAGAAGAAGGACT+GGG | - | chr2_1:22332049-22332068 | Msa0201250:intron | 35.0% |
| TTCTTTGCTTGTATCTACAC+TGG | - | chr2_1:22332080-22332099 | Msa0201250:intron | 35.0% | |
| TTTAGCACATTTGCCATGAA+TGG | - | chr2_1:22332199-22332218 | Msa0201250:intron | 35.0% | |
| TTAGCACATTTGCCATGAAT+GGG | - | chr2_1:22332200-22332219 | Msa0201250:intron | 35.0% | |
| ATTTGTAGCTAACCCATTCA+TGG | + | chr2_1:22332215-22332234 | None:intergenic | 35.0% | |
| !! | TGAATGGGTTAGCTACAAAT+CGG | - | chr2_1:22332215-22332234 | Msa0201250:intron | 35.0% |
| ! | CGGTCTTTAAATCGATTCAA+TGG | - | chr2_1:22332235-22332254 | Msa0201250:intron | 35.0% |
| AAAACTACGTTCAAAGACCT+AGG | + | chr2_1:22332267-22332286 | None:intergenic | 35.0% | |
| CGAGTAGTTCATATGATCTA+TGG | - | chr2_1:22332514-22332533 | Msa0201250:intron | 35.0% | |
| GGTGTACCAAAGCTTAAAAA+TGG | - | chr2_1:22332535-22332554 | Msa0201250:intron | 35.0% | |
| ! | TTTGAAACTCTATCAGCATC+TGG | - | chr2_1:22332558-22332577 | Msa0201250:intron | 35.0% |
| TAGACGATAGCTTAATCGAT+CGG | - | chr2_1:22332627-22332646 | Msa0201250:intron | 35.0% | |
| !!! | AGTTTTGAGTGATTCATCCT+CGG | - | chr2_1:22332821-22332840 | Msa0201250:intron | 35.0% |
| ATGTGATGTGAATGAAGAGA+CGG | - | chr2_1:22332970-22332989 | Msa0201250:CDS | 35.0% | |
| GGCTAAAAATCAAATGCCAT+CGG | - | chr2_1:22333006-22333025 | Msa0201250:CDS | 35.0% | |
| AATCACATCATGATCAATCC+TGG | - | chr2_1:22333067-22333086 | Msa0201250:CDS | 35.0% | |
| AGTTAGTGTAAGGATTTACC+AGG | + | chr2_1:22333088-22333107 | None:intergenic | 35.0% | |
| AAAACACTACTCATCAAAGG+AGG | - | chr2_1:22333228-22333247 | Msa0201250:CDS | 35.0% | |
| ATATTTGATGCTGCTGAAGT+TGG | - | chr2_1:22333286-22333305 | Msa0201250:CDS | 35.0% | |
| ! | CTGCTGAAGTTGGAAATTTT+GGG | - | chr2_1:22333296-22333315 | Msa0201250:CDS | 35.0% |
| AGAGAACACTTTATTGCACT+TGG | - | chr2_1:22333486-22333505 | Msa0201250:intron | 35.0% | |
| !! | GAAACCAATTCAAGTTGACT+CGG | + | chr2_1:22333529-22333548 | None:intergenic | 35.0% |
| ! | AGTCAACTTGAATTGGTTTC+TGG | - | chr2_1:22333529-22333548 | Msa0201250:intron | 35.0% |
| TGCACTAGAGTAGTCAAATT+TGG | - | chr2_1:22333635-22333654 | Msa0201250:intron | 35.0% | |
| GATCTTTACCACTTTGTCTA+TGG | - | chr2_1:22333816-22333835 | Msa0201250:intron | 35.0% | |
| !! | TTTTTGGTCCATAGACAAAG+TGG | + | chr2_1:22333827-22333846 | None:intergenic | 35.0% |
| TAGAGTTGTCAAATTAGTCC+AGG | + | chr2_1:22333865-22333884 | None:intergenic | 35.0% | |
| GATAATTGTGTATGCACACA+AGG | + | chr2_1:22333900-22333919 | None:intergenic | 35.0% | |
| GTCTTGGATGAAAAAAACTG+CGG | - | chr2_1:22334236-22334255 | Msa0201250:intron | 35.0% | |
| ACATACAACCATGTTCGATA+CGG | - | chr2_1:22334573-22334592 | Msa0201250:intron | 35.0% | |
| !! | CTATGTACAAAAGTATTGGG+AGG | + | chr2_1:22334628-22334647 | None:intergenic | 35.0% |
| ! | CTCCCAATACTTTTGTACAT+AGG | - | chr2_1:22334626-22334645 | Msa0201250:intron | 35.0% |
| TGATCTATGTGATAGAGTAG+AGG | - | chr2_1:22334726-22334745 | Msa0201250:intron | 35.0% | |
| ATCACTCAAGCTTTCATGTA+TGG | - | chr2_1:22334850-22334869 | Msa0201250:CDS | 35.0% | |
| TATGGTCAACAGAATCTGAT+TGG | - | chr2_1:22334868-22334887 | Msa0201250:CDS | 35.0% | |
| TAGACTAAAGCTCCCTTATA+AGG | + | chr2_1:22335014-22335033 | None:intergenic | 35.0% | |
| TCAAAGCCACCATACTTTGA+TGG | - | chr2_1:22329910-22329929 | Msa0201250:three_prime_UTR | 40.0% | |
| TCTGTACCATCAAAGTATGG+TGG | + | chr2_1:22329919-22329938 | None:intergenic | 40.0% | |
| GTACAGATTTAACTGAGTGG+AGG | - | chr2_1:22329932-22329951 | Msa0201250:three_prime_UTR | 40.0% | |
| ! | AGGTTTAGAATTGACATCGG+AGG | + | chr2_1:22330550-22330569 | None:intergenic | 40.0% |
| TCCAGTATCACAACAAACTC+CGG | - | chr2_1:22330569-22330588 | Msa0201250:CDS | 40.0% | |
| !! | GCCTAATCCTGAGTTTTTAG+AGG | - | chr2_1:22330611-22330630 | Msa0201250:CDS | 40.0% |
| TACGAACTGAGCTATACTCA+CGG | - | chr2_1:22331128-22331147 | Msa0201250:intron | 40.0% | |
| TAGAGGAGAGTGAAGATGTA+TGG | - | chr2_1:22331249-22331268 | Msa0201250:intron | 40.0% | |
| AATAAGGTTGAGATTGTGGG+AGG | - | chr2_1:22331273-22331292 | Msa0201250:intron | 40.0% | |
| TACATGTAGTGATGTCAGGT+GGG | - | chr2_1:22331549-22331568 | Msa0201250:CDS | 40.0% | |
| TAGGGGATGATCAAAGGAAA+AGG | - | chr2_1:22331625-22331644 | Msa0201250:CDS | 40.0% | |
| GCAGCAATATGCAATAGTGT+AGG | + | chr2_1:22331768-22331787 | None:intergenic | 40.0% | |
| ACACTATTGCATATTGCTGC+AGG | - | chr2_1:22331768-22331787 | Msa0201250:CDS | 40.0% | |
| TGCTAACCACATTCACTTTG+TGG | - | chr2_1:22331791-22331810 | Msa0201250:intron | 40.0% | |
| TAACCACATTCACTTTGTGG+TGG | - | chr2_1:22331794-22331813 | Msa0201250:intron | 40.0% | |
| TGCAAAGCAGCATACTGAAT+AGG | + | chr2_1:22331981-22332000 | None:intergenic | 40.0% | |
| !! | ATTCAGTATGCTGCTTTGCA+AGG | - | chr2_1:22331981-22332000 | Msa0201250:CDS | 40.0% |
| TGTATCTACACTGGCATCTA+TGG | - | chr2_1:22332089-22332108 | Msa0201250:intron | 40.0% | |
| ATAGCTTAATCGATCGGTGT+AGG | - | chr2_1:22332633-22332652 | Msa0201250:intron | 40.0% | |
| AAATCCCATATGCTCTACGA+GGG | + | chr2_1:22332848-22332867 | None:intergenic | 40.0% | |
| AAAATCCCATATGCTCTACG+AGG | + | chr2_1:22332849-22332868 | None:intergenic | 40.0% | |
| ! | TGCAGACTTAGCCTTCAAAA+TGG | - | chr2_1:22332919-22332938 | Msa0201250:CDS | 40.0% |
| CAATGACATGAAGAATCCGA+TGG | + | chr2_1:22333025-22333044 | None:intergenic | 40.0% | |
| TCAGGTCTGCAGTACAAAAT+TGG | + | chr2_1:22333156-22333175 | None:intergenic | 40.0% | |
| TGCAGACCTGAAAAATCACA+TGG | - | chr2_1:22333165-22333184 | Msa0201250:CDS | 40.0% | |
| ! | GCTGCTGAAGTTGGAAATTT+TGG | - | chr2_1:22333295-22333314 | Msa0201250:CDS | 40.0% |
| ATCCCATATCAAGCTTGGAT+GGG | + | chr2_1:22333344-22333363 | None:intergenic | 40.0% | |
| TTCACATCCCATATCAAGCT+TGG | + | chr2_1:22333349-22333368 | None:intergenic | 40.0% | |
| TGTCGAGTTATTATGGTTCG+AGG | - | chr2_1:22333570-22333589 | Msa0201250:intron | 40.0% | |
| AGAGTAGTCAAATTTGGCAC+TGG | - | chr2_1:22333641-22333660 | Msa0201250:intron | 40.0% | |
| ! | TAGTCAAATTTGGCACTGGA+TGG | - | chr2_1:22333645-22333664 | Msa0201250:intron | 40.0% |
| ! | AGTCAAATTTGGCACTGGAT+GGG | - | chr2_1:22333646-22333665 | Msa0201250:intron | 40.0% |
| GCCAACCTAGCCTAAAATAT+GGG | + | chr2_1:22333672-22333691 | None:intergenic | 40.0% | |
| !!! | GAGTGCGTCCCTATTTTTTT+TGG | + | chr2_1:22333843-22333862 | None:intergenic | 40.0% |
| ATTTCGACAGTCATTGCAAC+CGG | - | chr2_1:22334273-22334292 | Msa0201250:intron | 40.0% | |
| TCTATTCTTGTCTCGCGTTA+TGG | - | chr2_1:22334441-22334460 | Msa0201250:intron | 40.0% | |
| CATCTCCATAACAAGCATGA+TGG | - | chr2_1:22334524-22334543 | Msa0201250:intron | 40.0% | |
| ! | TGCTACCATCATGCTTGTTA+TGG | + | chr2_1:22334532-22334551 | None:intergenic | 40.0% |
| ATAGGAAACCGTATCGAACA+TGG | + | chr2_1:22334584-22334603 | None:intergenic | 40.0% | |
| GTTTGGCCTGTGATTGAGAA+TGG | - | chr2_1:22329994-22330013 | Msa0201250:three_prime_UTR | 45.0% | |
| TGTAAGTTGTCAGACGGCAA+AGG | - | chr2_1:22330131-22330150 | Msa0201250:three_prime_UTR | 45.0% | |
| TCAGACGGCAAAGGAAATGT+GGG | - | chr2_1:22330140-22330159 | Msa0201250:three_prime_UTR | 45.0% | |
| AAACTTAAGATCGACGCAGC+TGG | + | chr2_1:22330330-22330349 | None:intergenic | 45.0% | |
| !! | GGAGTTTGTTGTGATACTGG+AGG | + | chr2_1:22330570-22330589 | None:intergenic | 45.0% |
| AGGAATGCTGTCATAGTCCA+AGG | - | chr2_1:22330715-22330734 | Msa0201250:CDS | 45.0% | |
| GAGCAATGTCATCTCTACCT+TGG | + | chr2_1:22330735-22330754 | None:intergenic | 45.0% | |
| ! | AACAATCGTGTCAACGGGTT+CGG | - | chr2_1:22331420-22331439 | Msa0201250:CDS | 45.0% |
| GTACATGTAGTGATGTCAGG+TGG | - | chr2_1:22331548-22331567 | Msa0201250:CDS | 45.0% | |
| ATGCTGCCATTACAAATGGG+TGG | - | chr2_1:22331742-22331761 | Msa0201250:CDS | 45.0% | |
| TGTAGGCCACCCATTTGTAA+TGG | + | chr2_1:22331751-22331770 | None:intergenic | 45.0% | |
| ACTCCACCACAAAGTGAATG+TGG | + | chr2_1:22331800-22331819 | None:intergenic | 45.0% | |
| CGATTCAATGGGTGTTTCCT+AGG | - | chr2_1:22332247-22332266 | Msa0201250:intron | 45.0% | |
| AGAGACGGCTTTACATCTCT+TGG | - | chr2_1:22332985-22333004 | Msa0201250:CDS | 45.0% | |
| TGCCCATCCAAGCTTGATAT+GGG | - | chr2_1:22333339-22333358 | Msa0201250:intron | 45.0% | |
| CATCCCATATCAAGCTTGGA+TGG | + | chr2_1:22333345-22333364 | None:intergenic | 45.0% | |
| ACCACCGAGTCAACTTGAAT+TGG | - | chr2_1:22333522-22333541 | Msa0201250:intron | 45.0% | |
| !! | ACCAATTCAAGTTGACTCGG+TGG | + | chr2_1:22333526-22333545 | None:intergenic | 45.0% |
| ! | ACTGGATGGGCCCATATTTT+AGG | - | chr2_1:22333659-22333678 | Msa0201250:intron | 45.0% |
| !! | ATGGGCCCATATTTTAGGCT+AGG | - | chr2_1:22333664-22333683 | Msa0201250:intron | 45.0% |
| !! | GCCCATATTTTAGGCTAGGT+TGG | - | chr2_1:22333668-22333687 | Msa0201250:intron | 45.0% |
| GGCCAACCTAGCCTAAAATA+TGG | + | chr2_1:22333673-22333692 | None:intergenic | 45.0% | |
| !!! | ATTTTAGGCTAGGTTGGCCT+CGG | - | chr2_1:22333674-22333693 | Msa0201250:intron | 45.0% |
| AAAAATGGGACGCCTTCATC+CGG | - | chr2_1:22333754-22333773 | Msa0201250:intron | 45.0% | |
| CAAAGTCTTGGGTTCGAATC+CGG | + | chr2_1:22333776-22333795 | None:intergenic | 45.0% | |
| GATTCGAACCCAAGACTTTG+AGG | - | chr2_1:22333776-22333795 | Msa0201250:intron | 45.0% | |
| CACACACACCTCAAAGTCTT+GGG | + | chr2_1:22333787-22333806 | None:intergenic | 45.0% | |
| TCACACACACCTCAAAGTCT+TGG | + | chr2_1:22333788-22333807 | None:intergenic | 45.0% | |
| AAAAAATAGGGACGCACTCC+TGG | - | chr2_1:22333844-22333863 | Msa0201250:intron | 45.0% | |
| TAAGGAAGGATGCAGAGTCT+TGG | - | chr2_1:22334220-22334239 | Msa0201250:intron | 45.0% | |
| ! | AGTTACTTTACCAGGCGGTA+CGG | - | chr2_1:22334311-22334330 | Msa0201250:intron | 45.0% |
| !!! | TTATGAATTTTATTTTAATA+TGG | + | chr2_1:22330960-22330979 | None:intergenic | 5.0% |
| !!! | TTTTATTAATTTTTTTACAT+TGG | - | chr2_1:22333113-22333132 | Msa0201250:CDS | 5.0% |
| !! | AATATTAATATATTATTGTA+AGG | - | chr2_1:22334749-22334768 | Msa0201250:intron | 5.0% |
| GTCAGACGGCAAAGGAAATG+TGG | - | chr2_1:22330139-22330158 | Msa0201250:three_prime_UTR | 50.0% | |
| !! | GCCGGAGTTTGTTGTGATAC+TGG | + | chr2_1:22330573-22330592 | None:intergenic | 50.0% |
| GCGTTGTATAGGTCTGATGC+CGG | + | chr2_1:22330591-22330610 | None:intergenic | 50.0% | |
| CAGGATTAGGCGCGTTGTAT+AGG | + | chr2_1:22330602-22330621 | None:intergenic | 50.0% | |
| TCTATGATGCGCTTAGCTGC+TGG | + | chr2_1:22331702-22331721 | None:intergenic | 50.0% | |
| TTCTGTATTGCTGCTGCTGC+TGG | - | chr2_1:22331879-22331898 | Msa0201250:CDS | 50.0% | |
| TCTGGTCCCTAGATCGATTG+CGG | - | chr2_1:22332441-22332460 | Msa0201250:intron | 50.0% | |
| TCTCTGCCGCAATCGATCTA+GGG | + | chr2_1:22332450-22332469 | None:intergenic | 50.0% | |
| GTGCCCATCCAAGCTTGATA+TGG | - | chr2_1:22333338-22333357 | Msa0201250:intron | 50.0% | |
| TTGGGTTCGAATCCGGATGA+AGG | + | chr2_1:22333769-22333788 | None:intergenic | 50.0% | |
| ! | GCTGCTGCAGTTACTTTACC+AGG | - | chr2_1:22334303-22334322 | Msa0201250:intron | 50.0% |
| ! | GCTGCAGTTACTTTACCAGG+CGG | - | chr2_1:22334306-22334325 | Msa0201250:intron | 50.0% |
| TGGAAGACTCTGTCTAAGCC+TGG | - | chr2_1:22334695-22334714 | Msa0201250:intron | 50.0% | |
| GTCTCTGCCGCAATCGATCT+AGG | + | chr2_1:22332451-22332470 | None:intergenic | 55.0% | |
| ATATGCTCTACGAGGGACCG+AGG | + | chr2_1:22332841-22332860 | None:intergenic | 55.0% | |
| TCGGTCCCTCGTAGAGCATA+TGG | - | chr2_1:22332840-22332859 | Msa0201250:intron | 55.0% | |
| CGGTCCCTCGTAGAGCATAT+GGG | - | chr2_1:22332841-22332860 | Msa0201250:intron | 55.0% | |
| AACTGCAGCAGCGAACACTC+CGG | + | chr2_1:22334295-22334314 | None:intergenic | 55.0% | |
| CCAGAGTCATCCGTACCGCC+TGG | + | chr2_1:22334324-22334343 | None:intergenic | 65.0% | |
| CCAGGCGGTACGGATGACTC+TGG | - | chr2_1:22334321-22334340 | Msa0201250:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 22329889 | 22335070 | 22329889 | ID=Msa0201250;Name=Msa0201250 |
| chr2_1 | mRNA | 22329889 | 22335070 | 22329889 | ID=Msa0201250-mRNA-1;Parent=Msa0201250;Name=Msa0201250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.8|0.83|1|0.8|0.83|6|423|654 |
| chr2_1 | exon | 22329889 | 22330833 | 22329889 | ID=Msa0201250-mRNA-1:exon:8901;Parent=Msa0201250-mRNA-1 |
| chr2_1 | exon | 22331368 | 22331789 | 22331368 | ID=Msa0201250-mRNA-1:exon:8900;Parent=Msa0201250-mRNA-1 |
| chr2_1 | exon | 22331871 | 22332035 | 22331871 | ID=Msa0201250-mRNA-1:exon:8899;Parent=Msa0201250-mRNA-1 |
| chr2_1 | exon | 22332849 | 22333331 | 22332849 | ID=Msa0201250-mRNA-1:exon:8898;Parent=Msa0201250-mRNA-1 |
| chr2_1 | exon | 22334320 | 22334423 | 22334320 | ID=Msa0201250-mRNA-1:exon:8897;Parent=Msa0201250-mRNA-1 |
| chr2_1 | exon | 22334802 | 22335070 | 22334802 | ID=Msa0201250-mRNA-1:exon:8896;Parent=Msa0201250-mRNA-1 |
| chr2_1 | CDS | 22334802 | 22335070 | 22334802 | ID=Msa0201250-mRNA-1:cds;Parent=Msa0201250-mRNA-1 |
| chr2_1 | CDS | 22334320 | 22334423 | 22334320 | ID=Msa0201250-mRNA-1:cds;Parent=Msa0201250-mRNA-1 |
| chr2_1 | CDS | 22332849 | 22333331 | 22332849 | ID=Msa0201250-mRNA-1:cds;Parent=Msa0201250-mRNA-1 |
| chr2_1 | CDS | 22331871 | 22332035 | 22331871 | ID=Msa0201250-mRNA-1:cds;Parent=Msa0201250-mRNA-1 |
| chr2_1 | CDS | 22331368 | 22331789 | 22331368 | ID=Msa0201250-mRNA-1:cds;Parent=Msa0201250-mRNA-1 |
| chr2_1 | CDS | 22330312 | 22330833 | 22330312 | ID=Msa0201250-mRNA-1:cds;Parent=Msa0201250-mRNA-1 |
| chr2_1 | three_prime_UTR | 22329889 | 22330311 | 22329889 | ID=Msa0201250-mRNA-1:three_prime_utr;Parent=Msa0201250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
