AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1344010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 120 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTTTGCACTACTTTATT+TGG 0.121328 tig0006787:-6158 None:intergenic
CTTCATAAATATTTGAAAAT+AGG 0.164201 tig0006787:-5768 None:intergenic
CTAAAATATTTGTTGAAATA+TGG 0.207446 tig0006787:+6060 Msa1344010:three_prime_UTR
TCTTACACTTGTTCTGCTTT+AGG 0.209814 tig0006787:-5622 None:intergenic
TTTCATCATTGAAGGATTTC+AGG 0.216204 tig0006787:+3692 Msa1344010:intron
GTAGATATGATTCGTGAATA+TGG 0.249264 tig0006787:+5411 Msa1344010:three_prime_UTR
CATTTGGTATATAACATTAT+TGG 0.256988 tig0006787:-3329 None:intergenic
AATCGTTAGTATTATTAGTT+TGG 0.257470 tig0006787:+2920 Msa1344010:CDS
TCCTCACTTGTTTGAATACT+TGG 0.277969 tig0006787:-3079 None:intergenic
ATTGATATCAATTACTTTCC+TGG 0.288993 tig0006787:+5456 Msa1344010:three_prime_UTR
CTTGCAAGAGAAATGAAATT+TGG 0.289856 tig0006787:-1189 None:intergenic
TATAGAAAAGAAGAGGAATT+AGG 0.291933 tig0006787:-858 None:intergenic
ACAAGGCTGGCTGAGCTTAT+AGG 0.297593 tig0006787:+3293 Msa1344010:exon
AAAGATTTGATCTTTGAATC+AGG 0.300677 tig0006787:+1013 Msa1344010:five_prime_UTR
ACTTGTTTGAATACTTGGTT+TGG 0.321358 tig0006787:-3074 None:intergenic
TCTTTAAGATTTATATTGTT+GGG 0.323070 tig0006787:+5002 Msa1344010:three_prime_UTR
CTTCCAACTTCTCTTGCTTT+AGG 0.340512 tig0006787:-5657 None:intergenic
CTTGTTTGAATACTTGGTTT+GGG 0.341169 tig0006787:-3073 None:intergenic
TATTGTTGGGGAATACATAA+AGG 0.342629 tig0006787:+5015 Msa1344010:three_prime_UTR
AGCATGAACATTCTATTCAT+TGG 0.350260 tig0006787:-5954 None:intergenic
AATAGAATGTTCATGCTTAG+TGG 0.358768 tig0006787:+5960 Msa1344010:three_prime_UTR
CTCTTTAAGATTTATATTGT+TGG 0.359704 tig0006787:+5001 Msa1344010:three_prime_UTR
ACACCCACCAAGACCTTTGT+TGG 0.369643 tig0006787:+5251 Msa1344010:three_prime_UTR
CCAGCTTTGGTGACTTCATA+AGG 0.370201 tig0006787:-4161 None:intergenic
GGCCGGACAACCACATCTTC+TGG 0.373243 tig0006787:+2969 Msa1344010:CDS
AGCTCGCGTTTACTGATATT+AGG 0.375570 tig0006787:-5058 None:intergenic
TAACAACATTGTCTATAAAC+TGG 0.377901 tig0006787:+6013 Msa1344010:three_prime_UTR
ATTTGACATTGTCTTGCATA+AGG 0.382180 tig0006787:+2545 Msa1344010:five_prime_UTR
TAGCGACTATCACAATAATA+TGG 0.384536 tig0006787:+3246 Msa1344010:intron
CCTTATGAAGTCACCAAAGC+TGG 0.387765 tig0006787:+4161 Msa1344010:three_prime_UTR
ATCGTTAGTATTATTAGTTT+GGG 0.392746 tig0006787:+2921 Msa1344010:CDS
GGAATCTCACCGGCAATACT+AGG 0.399683 tig0006787:-5157 None:intergenic
TAACCAGACACGGTTGCATT+TGG 0.400360 tig0006787:-3345 None:intergenic
GTTTATAGACAATGTTGTTA+AGG 0.401644 tig0006787:-6010 None:intergenic
ATACCAAATGCAACCGTGTC+TGG 0.408781 tig0006787:+3342 Msa1344010:three_prime_UTR
CGGCAACTTCAACCCAGCTT+TGG 0.416268 tig0006787:-4174 None:intergenic
GATCTTGATCCTAGTATTGC+CGG 0.427389 tig0006787:+5148 Msa1344010:three_prime_UTR
CTACAAGAGTTTGTCAATCA+TGG 0.430927 tig0006787:+4876 Msa1344010:three_prime_UTR
ATTGTTGTGAGTGATGAAAT+TGG 0.432197 tig0006787:-912 None:intergenic
TTCAGAGCTTGAACCTCCAC+TGG 0.437347 tig0006787:+4851 Msa1344010:three_prime_UTR
GTAAAGACATGCTCGTAGTC+TGG 0.437470 tig0006787:-5584 None:intergenic
ACTTCATAAGGAATAGTAGA+TGG 0.444777 tig0006787:-4149 None:intergenic
AGCCTCTCCAACAAAGGTCT+TGG 0.445162 tig0006787:-5258 None:intergenic
AAAAGAGCTTCGTCATAGAT+TGG 0.446522 tig0006787:+5284 Msa1344010:three_prime_UTR
CTGCCTAAAGCAAGAGAAGT+TGG 0.446556 tig0006787:+5654 Msa1344010:three_prime_UTR
TGGGTCAGAAAATTGTTGTT+GGG 0.450840 tig0006787:+1127 Msa1344010:five_prime_UTR
CATTAAGTACACGAGGAATC+TGG 0.453868 tig0006787:+3437 Msa1344010:three_prime_UTR
TGTGTGTGTGTAATTTATAA+TGG 0.455315 tig0006787:-884 None:intergenic
CTCTCCAACAAAGGTCTTGG+TGG 0.458592 tig0006787:-5255 None:intergenic
ATCCAGAAGATGTGGTTGTC+CGG 0.460075 tig0006787:-2971 None:intergenic
TTGGGTCAGAAAATTGTTGT+TGG 0.460458 tig0006787:+1126 Msa1344010:five_prime_UTR
ATTTGTTCTTTCCAGTTGTT+AGG 0.472300 tig0006787:+2762 Msa1344010:intron
TAGATATGATTCGTGAATAT+GGG 0.472467 tig0006787:+5412 Msa1344010:three_prime_UTR
GCTGCTGCACATGAAACTCT+TGG 0.473192 tig0006787:-5109 None:intergenic
GCTGGCTGAGCTTATAGGTT+AGG 0.474141 tig0006787:+3298 Msa1344010:exon
TGTAAATGTTGAATTGCATC+AGG 0.481257 tig0006787:-3748 None:intergenic
CAAATTTCATTTCTCTTGCA+AGG 0.481455 tig0006787:+1190 Msa1344010:five_prime_UTR
AAGATTTGATCTTTGAATCA+GGG 0.482924 tig0006787:+1014 Msa1344010:five_prime_UTR
CACATGAAACTCTTGGAAAA+CGG 0.483083 tig0006787:-5102 None:intergenic
TTATGCAAGACAATGTCAAA+TGG 0.500174 tig0006787:-2543 None:intergenic
CACCAAGACCTTTGTTGGAG+AGG 0.502650 tig0006787:+5256 Msa1344010:three_prime_UTR
TTGTTTGAATACTTGGTTTG+GGG 0.506145 tig0006787:-3072 None:intergenic
TGTTTGAATACTTGGTTTGG+GGG 0.507717 tig0006787:-3071 None:intergenic
ATTATGAGAATTGAAAATGA+TGG 0.510474 tig0006787:-941 None:intergenic
TCCAGTTGTTAGGCGAGGAA+TGG 0.516509 tig0006787:+2772 Msa1344010:intron
GGATCAAGAACGAATACATC+GGG 0.519070 tig0006787:-3724 None:intergenic
CCACATCTTGAAGCATGGAT+TGG 0.521285 tig0006787:-3777 None:intergenic
CATCTTGAAGCATGGATTGG+CGG 0.525990 tig0006787:-3774 None:intergenic
CTTTAAGATTTATATTGTTG+GGG 0.527390 tig0006787:+5003 Msa1344010:three_prime_UTR
GCTGGGTTGAAGTTGCCGTT+AGG 0.530540 tig0006787:+4179 Msa1344010:three_prime_UTR
TTTGCAAGCCTCTCCAACAA+AGG 0.530921 tig0006787:-5264 None:intergenic
ATCCACCACATCTTGAAGCA+TGG 0.535346 tig0006787:-3782 None:intergenic
TTATGAGAATTGAAAATGAT+GGG 0.549153 tig0006787:-940 None:intergenic
TTTGGGAGTTGAGTATGACA+TGG 0.550445 tig0006787:+2938 Msa1344010:CDS
AATTTCTTAAAGAACAAGGC+TGG 0.550507 tig0006787:+3280 Msa1344010:CDS
ATCAAATTTCTTAAAGAACA+AGG 0.557356 tig0006787:+3276 Msa1344010:CDS
CCAATCCATGCTTCAAGATG+TGG 0.557398 tig0006787:+3777 Msa1344010:three_prime_UTR
TTCTTTCCAGTTGTTAGGCG+AGG 0.558531 tig0006787:+2767 Msa1344010:intron
TGGTAGAAATTGGGACAGAG+TGG 0.560116 tig0006787:-6103 None:intergenic
TATGTGTAATGCAGGAGCAA+GGG 0.560921 tig0006787:+2471 Msa1344010:intron
AGATTTGATCTTTGAATCAG+GGG 0.562044 tig0006787:+1015 Msa1344010:five_prime_UTR
GATGACTAACTTCTGACAGC+TGG 0.564814 tig0006787:+3404 Msa1344010:three_prime_UTR
CTTATGAAGTCACCAAAGCT+GGG 0.565266 tig0006787:+4162 Msa1344010:three_prime_UTR
TTATGTGTAATGCAGGAGCA+AGG 0.565876 tig0006787:+2470 Msa1344010:intron
AGTTGCAAAACCTCTAGTTG+TGG 0.567026 tig0006787:+4776 Msa1344010:intron
ATCCATGCTTCAAGATGTGG+TGG 0.574463 tig0006787:+3780 Msa1344010:three_prime_UTR
TACAAGTACAATGTGAAAGT+AGG 0.575523 tig0006787:-2834 None:intergenic
TGAAAGTAGGCTGAAGTGAG+TGG 0.580145 tig0006787:-2821 None:intergenic
GAGTATGACATGGAGGTGAT+TGG 0.583214 tig0006787:+2948 Msa1344010:CDS
TCTGATCATGATTCATGATG+AGG 0.583455 tig0006787:-3034 None:intergenic
CGCGAGCTATCAAAAGTCGC+AGG 0.584140 tig0006787:+5073 Msa1344010:three_prime_UTR
AGATATAATGAAAGCTGCAT+CGG 0.587786 tig0006787:+3378 Msa1344010:three_prime_UTR
ACTATCACAATAATATGGCA+TGG 0.590368 tig0006787:+3251 Msa1344010:CDS
TATAATGAAAGCTGCATCGG+AGG 0.592961 tig0006787:+3381 Msa1344010:three_prime_UTR
TCTCCAACAAAGGTCTTGGT+GGG 0.597564 tig0006787:-5254 None:intergenic
ATGACATGGAGGTGATTGGC+CGG 0.599011 tig0006787:+2952 Msa1344010:CDS
GCACTGCCATCCACAACTAG+AGG 0.603312 tig0006787:-4786 None:intergenic
AACAAGCCACTGTCAGAACA+AGG 0.605835 tig0006787:+2519 Msa1344010:five_prime_UTR
TAAACTGGCACGAAATGTCA+AGG 0.606576 tig0006787:+6028 Msa1344010:three_prime_UTR
AAGCATATAACTAGCTACAA+AGG 0.610187 tig0006787:-6133 None:intergenic
ATGTGTAATGCAGGAGCAAG+GGG 0.610801 tig0006787:+2472 Msa1344010:intron
GAAATGAAATTTATCAATCG+CGG 0.611747 tig0006787:-969 None:intergenic
GCAAAACCTCTAGTTGTGGA+TGG 0.613529 tig0006787:+4780 Msa1344010:three_prime_UTR
GGAATGGCGAGAGATTATTG+AGG 0.614262 tig0006787:+2788 Msa1344010:five_prime_UTR
CTAAACTTATCTGAGTGCAA+TGG 0.614593 tig0006787:+3805 Msa1344010:three_prime_UTR
ATCTATAAAATAACCAGACA+CGG 0.620774 tig0006787:-3355 None:intergenic
ATAATGAAAGCTGCATCGGA+GGG 0.621390 tig0006787:+3382 Msa1344010:three_prime_UTR
AGAAGTGATGGCGAAATCTG+AGG 0.629932 tig0006787:+1086 Msa1344010:five_prime_UTR
AATGGACCTTGTTCTGACAG+TGG 0.636759 tig0006787:-2525 None:intergenic
AACTCTTGTAGAACCAGTGG+AGG 0.639928 tig0006787:-4864 None:intergenic
AGGATCAAGAACGAATACAT+CGG 0.641347 tig0006787:-3725 None:intergenic
ACAAACTCTTGTAGAACCAG+TGG 0.644820 tig0006787:-4867 None:intergenic
TTGTAATAACTAGCTGACGA+GGG 0.649097 tig0006787:-4115 None:intergenic
GATTCGTGAATATGGGACGA+AGG 0.655124 tig0006787:+5419 Msa1344010:three_prime_UTR
GGGAATACATAAAGGTTGTG+AGG 0.657084 tig0006787:+5023 Msa1344010:three_prime_UTR
GGGAGTTGAGTATGACATGG+AGG 0.666502 tig0006787:+2941 Msa1344010:CDS
TTTGTAATAACTAGCTGACG+AGG 0.667968 tig0006787:-4116 None:intergenic
AAATGTTGAATTGCATCAGG+AGG 0.678092 tig0006787:-3745 None:intergenic
TGTGTAGTATCCAGAAGATG+TGG 0.688418 tig0006787:-2979 None:intergenic
AATAATACATTAAGTACACG+AGG 0.715214 tig0006787:+3430 Msa1344010:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGTTTTTTTTTTTAAAAAT+AGG + tig0006787:2633-2652 Msa1344010:intron 10.0%
!!! AATTAGTAATTACATATTTT+CGG - tig0006787:3597-3616 None:intergenic 10.0%
!! AAAATATGTAATTACTAATT+AGG + tig0006787:3597-3616 Msa1344010:intron 10.0%
!! AAATATGTAATTACTAATTA+GGG + tig0006787:3598-3617 Msa1344010:intron 10.0%
!!! TTTTTTAACTTTTTGTTTTA+CGG + tig0006787:5532-5551 Msa1344010:intron 10.0%
!!! TTAAAGTGATTTTTTTTTAG+TGG + tig0006787:1295-1314 Msa1344010:intron 15.0%
!!! AACTTAAGCTATATTTTTAT+CGG + tig0006787:2332-2351 Msa1344010:intron 15.0%
!! TTAAAAATAGGTTTCATTTA+TGG + tig0006787:2645-2664 Msa1344010:intron 15.0%
!! TTAATCTAAATAATTTGGTT+AGG + tig0006787:3115-3134 Msa1344010:intron 15.0%
!! TATTGTAATTTATCTATTCA+TGG - tig0006787:3531-3550 None:intergenic 15.0%
!! AAATTTGAAAGGAAAAAAAA+AGG - tig0006787:4754-4773 None:intergenic 15.0%
!!! TTTTGTTTTCCTTTTTTATT+TGG + tig0006787:4960-4979 Msa1344010:intron 15.0%
!!! TTTGTTTTCCTTTTTTATTT+GGG + tig0006787:4961-4980 Msa1344010:intron 15.0%
!!! TCTTTAAGATTTATATTGTT+GGG + tig0006787:5002-5021 Msa1344010:three_prime_UTR 15.0%
!! CTTCATAAATATTTGAAAAT+AGG - tig0006787:5771-5790 None:intergenic 15.0%
!!! CTATTTTCAAATATTTATGA+AGG + tig0006787:5769-5788 Msa1344010:three_prime_UTR 15.0%
!!! CTAAAATATTTGTTGAAATA+TGG + tig0006787:6060-6079 Msa1344010:three_prime_UTR 15.0%
!! TTATGAGAATTGAAAATGAT+GGG - tig0006787:943-962 None:intergenic 20.0%
!! ATTATGAGAATTGAAAATGA+TGG - tig0006787:944-963 None:intergenic 20.0%
!!! TCATTTTCAATTCTCATAAT+CGG + tig0006787:944-963 Msa1344010:five_prime_UTR 20.0%
!! AAGAACAAAAAGAAAATCAT+TGG - tig0006787:1234-1253 None:intergenic 20.0%
!! AAAACATAAAAAGTAAAACG+TGG - tig0006787:1277-1296 None:intergenic 20.0%
!!! AAACTCTGTTTTTCTTTTTT+TGG + tig0006787:1407-1426 Msa1344010:intron 20.0%
!!! TAATTTTTTATGAGAATCAG+AGG + tig0006787:1816-1835 Msa1344010:intron 20.0%
!!! TTCTTCTTTTATAACATTCA+TGG + tig0006787:2887-2906 Msa1344010:CDS 20.0%
!! AATCGTTAGTATTATTAGTT+TGG + tig0006787:2920-2939 Msa1344010:CDS 20.0%
!!! ATCGTTAGTATTATTAGTTT+GGG + tig0006787:2921-2940 Msa1344010:CDS 20.0%
!! TGTGGTTAATCTAAATAATT+TGG + tig0006787:3110-3129 Msa1344010:intron 20.0%
!! ATCAAATTTCTTAAAGAACA+AGG + tig0006787:3276-3295 Msa1344010:CDS 20.0%
!! CATTTGGTATATAACATTAT+TGG - tig0006787:3332-3351 None:intergenic 20.0%
!!! TCAACTATTTTTGTACTTTT+TGG + tig0006787:3977-3996 Msa1344010:intron 20.0%
!! CAACTTGAAAAAATGAAAAA+AGG - tig0006787:4020-4039 None:intergenic 20.0%
!! GTATATTATATACTAGCTAT+TGG + tig0006787:4280-4299 Msa1344010:intron 20.0%
!!! CTCTTTAAGATTTATATTGT+TGG + tig0006787:5001-5020 Msa1344010:three_prime_UTR 20.0%
!!! CTTTAAGATTTATATTGTTG+GGG + tig0006787:5003-5022 Msa1344010:three_prime_UTR 20.0%
! TATAGAAAAGAAGAGGAATT+AGG - tig0006787:861-880 None:intergenic 25.0%
!!! ATGGTTTTATAGAAAAGAAG+AGG - tig0006787:868-887 None:intergenic 25.0%
! TGTGTGTGTGTAATTTATAA+TGG - tig0006787:887-906 None:intergenic 25.0%
! GAAATGAAATTTATCAATCG+CGG - tig0006787:972-991 None:intergenic 25.0%
! AAAGATTTGATCTTTGAATC+AGG + tig0006787:1013-1032 Msa1344010:five_prime_UTR 25.0%
! AAGATTTGATCTTTGAATCA+GGG + tig0006787:1014-1033 Msa1344010:five_prime_UTR 25.0%
!!! AAGTGATTTTTTTTTAGTGG+TGG + tig0006787:1298-1317 Msa1344010:intron 25.0%
!!! AGTGATTTTTTTTTAGTGGT+GGG + tig0006787:1299-1318 Msa1344010:intron 25.0%
! AAGAAAAACAGAGTTTACAA+TGG - tig0006787:1403-1422 None:intergenic 25.0%
!!! CTTTTGTTGTTACTTTTTGT+CGG + tig0006787:1432-1451 Msa1344010:intron 25.0%
!! TACAAGAAATCTAAAAGTGT+CGG - tig0006787:1596-1615 None:intergenic 25.0%
! ATTGTTCATAAGAAAGATAC+CGG + tig0006787:1750-1769 Msa1344010:intron 25.0%
!! TTCCTTGTAATTTTAAATCC+CGG - tig0006787:1772-1791 None:intergenic 25.0%
!! TATAATTTGTCTTTGTGAGA+TGG + tig0006787:1793-1812 Msa1344010:intron 25.0%
! AAAACTTACATGACTTTACA+TGG + tig0006787:1899-1918 Msa1344010:intron 25.0%
! CAAATCAATATTGTCAACTA+TGG - tig0006787:2198-2217 None:intergenic 25.0%
!! CATAGTTGACAATATTGATT+TGG + tig0006787:2196-2215 Msa1344010:intron 25.0%
!!! AATATTGATTTGGATAGTCA+AGG + tig0006787:2206-2225 Msa1344010:intron 25.0%
! AAATTATTAACACTCAACAG+TGG + tig0006787:2285-2304 Msa1344010:intron 25.0%
!!! ATTTTTATCGGTTCAATGTT+TGG + tig0006787:2344-2363 Msa1344010:intron 25.0%
!! CTGCATTACACATAATTTTT+AGG - tig0006787:2465-2484 None:intergenic 25.0%
! CTAAAAATTATGTGTAATGC+AGG + tig0006787:2463-2482 Msa1344010:intron 25.0%
! TAAATAATTTGGTTAGGCAT+TGG + tig0006787:3121-3140 Msa1344010:intron 25.0%
! ATCTATAAAATAACCAGACA+CGG - tig0006787:3358-3377 None:intergenic 25.0%
! AATAATACATTAAGTACACG+AGG + tig0006787:3430-3449 Msa1344010:three_prime_UTR 25.0%
!! AAAAAGTCAAATTTCTGAAG+AGG - tig0006787:3467-3486 None:intergenic 25.0%
! AATCCTTCAATGATGAAAAA+GGG - tig0006787:3690-3709 None:intergenic 25.0%
! AAATCCTTCAATGATGAAAA+AGG - tig0006787:3691-3710 None:intergenic 25.0%
!!! GTTAACTACTGTTGTTTTAT+AGG + tig0006787:4080-4099 Msa1344010:intron 25.0%
!! ATAACAGTGTTGTTAAATAG+CGG + tig0006787:4335-4354 Msa1344010:intron 25.0%
!! TTGACAACATTTTGTACAAA+TGG - tig0006787:4419-4438 None:intergenic 25.0%
!!! TTGTTTTATTAGCCAAAGAT+TGG + tig0006787:4599-4618 Msa1344010:intron 25.0%
! CTAAATAGTAAACCAATCTT+TGG - tig0006787:4614-4633 None:intergenic 25.0%
! TTTGCAACTGAAAATTTGAA+AGG - tig0006787:4765-4784 None:intergenic 25.0%
! AGTTGAAATGTTTCATCTTA+TGG - tig0006787:5208-5227 None:intergenic 25.0%
! TAGATATGATTCGTGAATAT+GGG + tig0006787:5412-5431 Msa1344010:three_prime_UTR 25.0%
! ATTGATATCAATTACTTTCC+TGG + tig0006787:5456-5475 Msa1344010:three_prime_UTR 25.0%
! GTTTATAGACAATGTTGTTA+AGG - tig0006787:6013-6032 None:intergenic 25.0%
! TAACAACATTGTCTATAAAC+TGG + tig0006787:6013-6032 Msa1344010:three_prime_UTR 25.0%
! AAAGTTTGCACTACTTTATT+TGG - tig0006787:6161-6180 None:intergenic 25.0%
!!! TGTGGATTGGGATTTTTTTT+GGG - tig0006787:808-827 None:intergenic 30.0%
! AGAAAGAAAAAGTGTGGATT+GGG - tig0006787:820-839 None:intergenic 30.0%
ATTGTTGTGAGTGATGAAAT+TGG - tig0006787:915-934 None:intergenic 30.0%
AGATTTGATCTTTGAATCAG+GGG + tig0006787:1015-1034 Msa1344010:five_prime_UTR 30.0%
! ATTTTCGGTATGAGACTAAA+CGG + tig0006787:1039-1058 Msa1344010:five_prime_UTR 30.0%
! ACAATTTTCTGACCCAAAAA+CGG - tig0006787:1123-1142 None:intergenic 30.0%
CTTGCAAGAGAAATGAAATT+TGG - tig0006787:1192-1211 None:intergenic 30.0%
CAAATTTCATTTCTCTTGCA+AGG + tig0006787:1190-1209 Msa1344010:five_prime_UTR 30.0%
!!! GTGATTTTTTTTTAGTGGTG+GGG + tig0006787:1300-1319 Msa1344010:intron 30.0%
!!! TGTTACTTTTTGTCGGTATA+TGG + tig0006787:1439-1458 Msa1344010:intron 30.0%
TTCTTGTAAACATACCAAAC+TGG + tig0006787:1608-1627 Msa1344010:intron 30.0%
!! GGTAATCTTGTTATTGTCTT+TGG + tig0006787:1641-1660 Msa1344010:intron 30.0%
! CAAAGGTTGAGCATAAATTT+TGG - tig0006787:1691-1710 None:intergenic 30.0%
CAAAATTTATGCTCAACCTT+TGG + tig0006787:1689-1708 Msa1344010:intron 30.0%
TTGTTCATAAGAAAGATACC+GGG + tig0006787:1751-1770 Msa1344010:intron 30.0%
! TACCGGGATTTAAAATTACA+AGG + tig0006787:1767-1786 Msa1344010:intron 30.0%
! TTGACTCTTGATCTTTTGAT+TGG + tig0006787:1956-1975 Msa1344010:intron 30.0%
AAAACCTTGTTGCTAAATGA+GGG - tig0006787:2030-2049 None:intergenic 30.0%
! ATATTGTCAACTATGGATTG+CGG - tig0006787:2191-2210 None:intergenic 30.0%
! ATATCAAACAAGAGCACAAA+AGG - tig0006787:2238-2257 None:intergenic 30.0%
!! TACATGGTTCAAAGTTTTGA+TGG + tig0006787:2414-2433 Msa1344010:intron 30.0%
!! CACATAATTTTTAGGCATTC+AGG - tig0006787:2457-2476 None:intergenic 30.0%
TTATGCAAGACAATGTCAAA+TGG - tig0006787:2546-2565 None:intergenic 30.0%
ATTTGACATTGTCTTGCATA+AGG + tig0006787:2545-2564 Msa1344010:five_prime_UTR 30.0%
!! TTATGGTTTTGCTGAATTTG+TGG + tig0006787:2662-2681 Msa1344010:intron 30.0%
ATTTGTTCTTTCCAGTTGTT+AGG + tig0006787:2762-2781 Msa1344010:intron 30.0%
TACAAGTACAATGTGAAAGT+AGG - tig0006787:2837-2856 None:intergenic 30.0%
! TTGTTTGAATACTTGGTTTG+GGG - tig0006787:3075-3094 None:intergenic 30.0%
CTTGTTTGAATACTTGGTTT+GGG - tig0006787:3076-3095 None:intergenic 30.0%
ACTTGTTTGAATACTTGGTT+TGG - tig0006787:3077-3096 None:intergenic 30.0%
CAGACAATAATTCGTTCTTT+GGG - tig0006787:3159-3178 None:intergenic 30.0%
ACAGACAATAATTCGTTCTT+TGG - tig0006787:3160-3179 None:intergenic 30.0%
! ACGAATTATTGTCTGTCTTT+TGG + tig0006787:3164-3183 Msa1344010:intron 30.0%
TAGCGACTATCACAATAATA+TGG + tig0006787:3246-3265 Msa1344010:intron 30.0%
ACTATCACAATAATATGGCA+TGG + tig0006787:3251-3270 Msa1344010:CDS 30.0%
AATTTCTTAAAGAACAAGGC+TGG + tig0006787:3280-3299 Msa1344010:CDS 30.0%
AGATATAATGAAAGCTGCAT+CGG + tig0006787:3378-3397 Msa1344010:three_prime_UTR 30.0%
ATCTATTCATGGAACTATTC+AGG - tig0006787:3520-3539 None:intergenic 30.0%
GCTATGAATATTTGGAAGAA+AGG - tig0006787:3571-3590 None:intergenic 30.0%
TACAAACTTCATGGAGAATT+TGG - tig0006787:3639-3658 None:intergenic 30.0%
CCATCAAAATACAAACTTCA+TGG - tig0006787:3648-3667 None:intergenic 30.0%
!! CCATGAAGTTTGTATTTTGA+TGG + tig0006787:3645-3664 Msa1344010:intron 30.0%
ATCCTTCAATGATGAAAAAG+GGG - tig0006787:3689-3708 None:intergenic 30.0%
TTTCATCATTGAAGGATTTC+AGG + tig0006787:3692-3711 Msa1344010:intron 30.0%
TGTAAATGTTGAATTGCATC+AGG - tig0006787:3751-3770 None:intergenic 30.0%
TACAATCCTAAAACTTTCAG+GGG - tig0006787:3885-3904 None:intergenic 30.0%
GTACAATCCTAAAACTTTCA+GGG - tig0006787:3886-3905 None:intergenic 30.0%
TGTACAATCCTAAAACTTTC+AGG - tig0006787:3887-3906 None:intergenic 30.0%
ACTTCATAAGGAATAGTAGA+TGG - tig0006787:4152-4171 None:intergenic 30.0%
AATCAAAGATACACACCTAA+CGG - tig0006787:4197-4216 None:intergenic 30.0%
TCTCTAGACTAGAATATATC+TGG + tig0006787:4239-4258 Msa1344010:intron 30.0%
! AGAACCTTGTTTGTATCATT+CGG + tig0006787:4560-4579 Msa1344010:intron 30.0%
ATATCCGAATGATACAAACA+AGG - tig0006787:4567-4586 None:intergenic 30.0%
AATCTTCTGATTATCCTGAT+TGG + tig0006787:4667-4686 Msa1344010:intron 30.0%
ATCTTCTGATTATCCTGATT+GGG + tig0006787:4668-4687 Msa1344010:intron 30.0%
! ATATTTGAAACAACCCAATC+AGG - tig0006787:4684-4703 None:intergenic 30.0%
AATAACACACAGAATGATTG+CGG - tig0006787:4922-4941 None:intergenic 30.0%
TGCAATGTCCCAAATAAAAA+AGG - tig0006787:4972-4991 None:intergenic 30.0%
!!! TTTTTTATTTGGGACATTGC+AGG + tig0006787:4971-4990 Msa1344010:intron 30.0%
TATTGTTGGGGAATACATAA+AGG + tig0006787:5015-5034 Msa1344010:three_prime_UTR 30.0%
TGAAATGTTTCATCTTATGG+TGG - tig0006787:5205-5224 None:intergenic 30.0%
GTAGATATGATTCGTGAATA+TGG + tig0006787:5411-5430 Msa1344010:three_prime_UTR 30.0%
TATAACTTATCTGCATTCCA+TGG + tig0006787:5483-5502 Msa1344010:intron 30.0%
AGCATGAACATTCTATTCAT+TGG - tig0006787:5957-5976 None:intergenic 30.0%
AATAGAATGTTCATGCTTAG+TGG + tig0006787:5960-5979 Msa1344010:three_prime_UTR 30.0%
!! GGTACTTTTTGGTAGAAATT+GGG - tig0006787:6115-6134 None:intergenic 30.0%
!! AGGTACTTTTTGGTAGAAAT+TGG - tig0006787:6116-6135 None:intergenic 30.0%
AAGCATATAACTAGCTACAA+AGG - tig0006787:6136-6155 None:intergenic 30.0%
!!! GTGTGGATTGGGATTTTTTT+TGG - tig0006787:809-828 None:intergenic 35.0%
! GAGAAAGAAAAAGTGTGGAT+TGG - tig0006787:821-840 None:intergenic 35.0%
!!! CTTTGAATCAGGGGTATTTT+CGG + tig0006787:1024-1043 Msa1344010:five_prime_UTR 35.0%
TTGGGTCAGAAAATTGTTGT+TGG + tig0006787:1126-1145 Msa1344010:five_prime_UTR 35.0%
! TGGGTCAGAAAATTGTTGTT+GGG + tig0006787:1127-1146 Msa1344010:five_prime_UTR 35.0%
CTGTGTAGTGTATTATTTGC+TGG + tig0006787:1353-1372 Msa1344010:intron 35.0%
TTGAGCTACAGACATTACAT+CGG - tig0006787:1545-1564 None:intergenic 35.0%
!! TACCAAACTGGTTTGTTTCT+TGG + tig0006787:1620-1639 Msa1344010:intron 35.0%
TACCAAGAAACAAACCAGTT+TGG - tig0006787:1625-1644 None:intergenic 35.0%
!! CAATGTATGAGTTTTGACCT+CGG - tig0006787:1734-1753 None:intergenic 35.0%
! AATGAGGGCATAAATGATTG+CGG - tig0006787:2015-2034 None:intergenic 35.0%
GAAAACCTTGTTGCTAAATG+AGG - tig0006787:2031-2050 None:intergenic 35.0%
TCTATGCAAGAATGCTATAG+AGG - tig0006787:2145-2164 None:intergenic 35.0%
TTGAACCATGTATTCAACCA+AGG - tig0006787:2406-2425 None:intergenic 35.0%
TCTGATCATGATTCATGATG+AGG - tig0006787:3037-3056 None:intergenic 35.0%
!! TGTTTGAATACTTGGTTTGG+GGG - tig0006787:3074-3093 None:intergenic 35.0%
ACCAAGTATTCAAACAAGTG+AGG + tig0006787:3078-3097 Msa1344010:intron 35.0%
TCCTCACTTGTTTGAATACT+TGG - tig0006787:3082-3101 None:intergenic 35.0%
!! CAAGTGAGGATTTACTTTTG+TGG + tig0006787:3092-3111 Msa1344010:intron 35.0%
!! ATAATTTGGTTAGGCATTGG+TGG + tig0006787:3124-3143 Msa1344010:intron 35.0%
TATTCATGGAACTATTCAGG+AGG - tig0006787:3517-3536 None:intergenic 35.0%
TTCGGTGAGCTATGAATATT+TGG - tig0006787:3579-3598 None:intergenic 35.0%
!!! TGTATTTTGATGGAGCTGAT+TGG + tig0006787:3655-3674 Msa1344010:intron 35.0%
!! TTCCCCTTTTTCATCATTGA+AGG + tig0006787:3684-3703 Msa1344010:intron 35.0%
AGGATCAAGAACGAATACAT+CGG - tig0006787:3728-3747 None:intergenic 35.0%
AAATGTTGAATTGCATCAGG+AGG - tig0006787:3748-3767 None:intergenic 35.0%
CTAAACTTATCTGAGTGCAA+TGG + tig0006787:3805-3824 Msa1344010:three_prime_UTR 35.0%
!! CAAGTTGATTATGTATCGCA+TGG + tig0006787:4033-4052 Msa1344010:intron 35.0%
!!! CTACTGTTGTTTTATAGGCA+AGG + tig0006787:4085-4104 Msa1344010:intron 35.0%
!!! TGTTGTTTTATAGGCAAGGT+TGG + tig0006787:4089-4108 Msa1344010:intron 35.0%
TTGTAATAACTAGCTGACGA+GGG - tig0006787:4118-4137 None:intergenic 35.0%
TTTGTAATAACTAGCTGACG+AGG - tig0006787:4119-4138 None:intergenic 35.0%
TTTGTACAAATGGCATATCG+TGG - tig0006787:4409-4428 None:intergenic 35.0%
TTGTCAAATAGCAGCTATAG+CGG + tig0006787:4432-4451 Msa1344010:intron 35.0%
CTACAAGAGTTTGTCAATCA+TGG + tig0006787:4876-4895 Msa1344010:three_prime_UTR 35.0%
CACATGAAACTCTTGGAAAA+CGG - tig0006787:5105-5124 None:intergenic 35.0%
!!! GGAATTTTTTGGAATCTCAC+CGG - tig0006787:5170-5189 None:intergenic 35.0%
AATGTTTCATCTTATGGTGG+TGG - tig0006787:5202-5221 None:intergenic 35.0%
AAAAGAGCTTCGTCATAGAT+TGG + tig0006787:5284-5303 Msa1344010:three_prime_UTR 35.0%
TGCAACCATATTTCTTTCCT+AGG + tig0006787:5331-5350 Msa1344010:intron 35.0%
GTATTAGTAAATCATCGCCT+AGG - tig0006787:5351-5370 None:intergenic 35.0%
GCAGATAAGTTATACTTACC+AGG - tig0006787:5477-5496 None:intergenic 35.0%
TTGATTTCTGTCATAGACCA+TGG - tig0006787:5503-5522 None:intergenic 35.0%
! ATTTTTCCATACCCTGCATT+CGG - tig0006787:5563-5582 None:intergenic 35.0%
TCTTACACTTGTTCTGCTTT+AGG - tig0006787:5625-5644 None:intergenic 35.0%
!!! CTAGCTACAAAGGTACTTTT+TGG - tig0006787:6126-6145 None:intergenic 35.0%
GCAGAGAGAAAGAAAAAGTG+TGG - tig0006787:826-845 None:intergenic 40.0%
CGAAGAAGAAGAAGAAGTGA+TGG + tig0006787:1074-1093 Msa1344010:five_prime_UTR 40.0%
CTCAATATGGACAACTCCAA+AGG - tig0006787:1708-1727 None:intergenic 40.0%
TTGTCCATATTGAGAATCCG+AGG + tig0006787:1714-1733 Msa1344010:intron 40.0%
TTGACCTCGGATTCTCAATA+TGG - tig0006787:1721-1740 None:intergenic 40.0%
TATGCCCTCATTTAGCAACA+AGG + tig0006787:2023-2042 Msa1344010:intron 40.0%
! ACTATGGATTGCGGAAATAG+AGG - tig0006787:2182-2201 None:intergenic 40.0%
! ATGTTTGGAGTTACCACTGT+CGG + tig0006787:2359-2378 Msa1344010:intron 40.0%
CATGTATTCAACCAAGGAAG+TGG - tig0006787:2400-2419 None:intergenic 40.0%
CACTTCCTTGGTTGAATACA+TGG + tig0006787:2398-2417 Msa1344010:intron 40.0%
TTATGTGTAATGCAGGAGCA+AGG + tig0006787:2470-2489 Msa1344010:intron 40.0%
TATGTGTAATGCAGGAGCAA+GGG + tig0006787:2471-2490 Msa1344010:intron 40.0%
TTTGGGAGTTGAGTATGACA+TGG + tig0006787:2938-2957 Msa1344010:CDS 40.0%
TGTGTAGTATCCAGAAGATG+TGG - tig0006787:2982-3001 None:intergenic 40.0%
TATAATGAAAGCTGCATCGG+AGG + tig0006787:3381-3400 Msa1344010:three_prime_UTR 40.0%
ATAATGAAAGCTGCATCGGA+GGG + tig0006787:3382-3401 Msa1344010:three_prime_UTR 40.0%
CATTAAGTACACGAGGAATC+TGG + tig0006787:3437-3456 Msa1344010:three_prime_UTR 40.0%
GGATCAAGAACGAATACATC+GGG - tig0006787:3727-3746 None:intergenic 40.0%
CTAAAACTTTCAGGGGAGAT+TGG - tig0006787:3878-3897 None:intergenic 40.0%
! CAATCTCCCCTGAAAGTTTT+AGG + tig0006787:3876-3895 Msa1344010:intron 40.0%
CGTACATCTTGCTCTTGTAT+TGG + tig0006787:3945-3964 Msa1344010:intron 40.0%
CTTATGAAGTCACCAAAGCT+GGG + tig0006787:4162-4181 Msa1344010:three_prime_UTR 40.0%
!! TAGCAGCTATAGCGGATTAA+CGG + tig0006787:4440-4459 Msa1344010:intron 40.0%
AGTTGCAAAACCTCTAGTTG+TGG + tig0006787:4776-4795 Msa1344010:intron 40.0%
ACAAACTCTTGTAGAACCAG+TGG - tig0006787:4870-4889 None:intergenic 40.0%
! TTTATTTGGGACATTGCAGG+TGG + tig0006787:4974-4993 Msa1344010:intron 40.0%
GGGAATACATAAAGGTTGTG+AGG + tig0006787:5023-5042 Msa1344010:three_prime_UTR 40.0%
AGCTCGCGTTTACTGATATT+AGG - tig0006787:5061-5080 None:intergenic 40.0%
GATCTTGATCCTAGTATTGC+CGG + tig0006787:5148-5167 Msa1344010:three_prime_UTR 40.0%
!! TTTCATCTTATGGTGGTGGT+GGG - tig0006787:5198-5217 None:intergenic 40.0%
CATCGCCTAGGAAAGAAATA+TGG - tig0006787:5339-5358 None:intergenic 40.0%
TGAATTGCAATGCCGTCTAT+AGG + tig0006787:5371-5390 Msa1344010:intron 40.0%
GAATTGCAATGCCGTCTATA+GGG + tig0006787:5372-5391 Msa1344010:intron 40.0%
! TTTACGGTTTTTCCGAATGC+AGG + tig0006787:5548-5567 Msa1344010:intron 40.0%
! TTACGGTTTTTCCGAATGCA+GGG + tig0006787:5549-5568 Msa1344010:intron 40.0%
CTTCCAACTTCTCTTGCTTT+AGG - tig0006787:5660-5679 None:intergenic 40.0%
TAAACTGGCACGAAATGTCA+AGG + tig0006787:6028-6047 Msa1344010:three_prime_UTR 40.0%
! AGAAGTGATGGCGAAATCTG+AGG + tig0006787:1086-1105 Msa1344010:five_prime_UTR 45.0%
!! GTGAGTACGACACCGTTTTT+GGG + tig0006787:1108-1127 Msa1344010:five_prime_UTR 45.0%
!! CTAAAAGTGTCGGTCACGAA+TGG - tig0006787:1586-1605 None:intergenic 45.0%
CGCTACAGCACAGATGATTT+GGG - tig0006787:2061-2080 None:intergenic 45.0%
ACGCTACAGCACAGATGATT+TGG - tig0006787:2062-2081 None:intergenic 45.0%
GCTGTAGCGTAATAGTGTTG+TGG + tig0006787:2072-2091 Msa1344010:intron 45.0%
GTGGTTGATCTCAGTAGAAG+TGG + tig0006787:2304-2323 Msa1344010:intron 45.0%
! TGTTTGGAGTTACCACTGTC+GGG + tig0006787:2360-2379 Msa1344010:intron 45.0%
! GTTTTACCTGACCACTTCCT+TGG + tig0006787:2386-2405 Msa1344010:intron 45.0%
ATTCAACCAAGGAAGTGGTC+AGG - tig0006787:2395-2414 None:intergenic 45.0%
ATGTGTAATGCAGGAGCAAG+GGG + tig0006787:2472-2491 Msa1344010:intron 45.0%
AACAAGCCACTGTCAGAACA+AGG + tig0006787:2519-2538 Msa1344010:five_prime_UTR 45.0%
AATGGACCTTGTTCTGACAG+TGG - tig0006787:2528-2547 None:intergenic 45.0%
TTCTTTCCAGTTGTTAGGCG+AGG + tig0006787:2767-2786 Msa1344010:intron 45.0%
GGAATGGCGAGAGATTATTG+AGG + tig0006787:2788-2807 Msa1344010:five_prime_UTR 45.0%
TGAAAGTAGGCTGAAGTGAG+TGG - tig0006787:2824-2843 None:intergenic 45.0%
GAGTATGACATGGAGGTGAT+TGG + tig0006787:2948-2967 Msa1344010:CDS 45.0%
ATCCAGAAGATGTGGTTGTC+CGG - tig0006787:2974-2993 None:intergenic 45.0%
ATACCAAATGCAACCGTGTC+TGG + tig0006787:3342-3361 Msa1344010:three_prime_UTR 45.0%
TAACCAGACACGGTTGCATT+TGG - tig0006787:3348-3367 None:intergenic 45.0%
GATGACTAACTTCTGACAGC+TGG + tig0006787:3404-3423 Msa1344010:three_prime_UTR 45.0%
!! CATCTTGAAGCATGGATTGG+CGG - tig0006787:3777-3796 None:intergenic 45.0%
CCACATCTTGAAGCATGGAT+TGG - tig0006787:3780-3799 None:intergenic 45.0%
CCAATCCATGCTTCAAGATG+TGG + tig0006787:3777-3796 Msa1344010:three_prime_UTR 45.0%
ATCCATGCTTCAAGATGTGG+TGG + tig0006787:3780-3799 Msa1344010:three_prime_UTR 45.0%
ATCCACCACATCTTGAAGCA+TGG - tig0006787:3785-3804 None:intergenic 45.0%
! CCAGCTTTGGTGACTTCATA+AGG - tig0006787:4164-4183 None:intergenic 45.0%
CCTTATGAAGTCACCAAAGC+TGG + tig0006787:4161-4180 Msa1344010:three_prime_UTR 45.0%
TAGCTATTGGCACCTTTCTG+CGG + tig0006787:4293-4312 Msa1344010:intron 45.0%
AACCAATCAATGCCGCAGAA+AGG - tig0006787:4308-4327 None:intergenic 45.0%
GTGTTGTCAATAGCAGGTCA+CGG - tig0006787:4512-4531 None:intergenic 45.0%
GAGTCAGTGTTGTCAATAGC+AGG - tig0006787:4518-4537 None:intergenic 45.0%
GCAAAACCTCTAGTTGTGGA+TGG + tig0006787:4780-4799 Msa1344010:three_prime_UTR 45.0%
AACTCTTGTAGAACCAGTGG+AGG - tig0006787:4867-4886 None:intergenic 45.0%
!!! GGTGGGAAAGGGGAATTTTT+TGG - tig0006787:5181-5200 None:intergenic 45.0%
!! GTTTCATCTTATGGTGGTGG+TGG - tig0006787:5199-5218 None:intergenic 45.0%
TCTCCAACAAAGGTCTTGGT+GGG - tig0006787:5257-5276 None:intergenic 45.0%
TTTGCAAGCCTCTCCAACAA+AGG - tig0006787:5267-5286 None:intergenic 45.0%
ACAAGCGAAGTCCCTATAGA+CGG - tig0006787:5386-5405 None:intergenic 45.0%
GATTCGTGAATATGGGACGA+AGG + tig0006787:5419-5438 Msa1344010:three_prime_UTR 45.0%
! GTTTTTCCGAATGCAGGGTA+TGG + tig0006787:5554-5573 Msa1344010:intron 45.0%
GTAAAGACATGCTCGTAGTC+TGG - tig0006787:5587-5606 None:intergenic 45.0%
CTGCCTAAAGCAAGAGAAGT+TGG + tig0006787:5654-5673 Msa1344010:three_prime_UTR 45.0%
TGGTAGAAATTGGGACAGAG+TGG - tig0006787:6106-6125 None:intergenic 45.0%
! GGTGAGTACGACACCGTTTT+TGG + tig0006787:1107-1126 Msa1344010:five_prime_UTR 50.0%
! GTTTGGAGTTACCACTGTCG+GGG + tig0006787:2361-2380 Msa1344010:intron 50.0%
! TTTGGAGTTACCACTGTCGG+GGG + tig0006787:2362-2381 Msa1344010:intron 50.0%
TCCAGTTGTTAGGCGAGGAA+TGG + tig0006787:2772-2791 Msa1344010:intron 50.0%
GGGAGTTGAGTATGACATGG+AGG + tig0006787:2941-2960 Msa1344010:CDS 50.0%
ATGACATGGAGGTGATTGGC+CGG + tig0006787:2952-2971 Msa1344010:CDS 50.0%
! ACAAGGCTGGCTGAGCTTAT+AGG + tig0006787:3293-3312 Msa1344010:exon 50.0%
GCTGGCTGAGCTTATAGGTT+AGG + tig0006787:3298-3317 Msa1344010:exon 50.0%
!! CACCTTTCTGCGGCATTGAT+TGG + tig0006787:4303-4322 Msa1344010:intron 50.0%
!! TAGCGGATTAACGGCGCTAT+AGG + tig0006787:4449-4468 Msa1344010:intron 50.0%
!! AGCGGATTAACGGCGCTATA+GGG + tig0006787:4450-4469 Msa1344010:intron 50.0%
TTCAGAGCTTGAACCTCCAC+TGG + tig0006787:4851-4870 Msa1344010:three_prime_UTR 50.0%
GCTGCTGCACATGAAACTCT+TGG - tig0006787:5112-5131 None:intergenic 50.0%
GGAATCTCACCGGCAATACT+AGG - tig0006787:5160-5179 None:intergenic 50.0%
!! TTATGGTGGTGGTGGGAAAG+GGG - tig0006787:5191-5210 None:intergenic 50.0%
!! CTTATGGTGGTGGTGGGAAA+GGG - tig0006787:5192-5211 None:intergenic 50.0%
!! TCTTATGGTGGTGGTGGGAA+AGG - tig0006787:5193-5212 None:intergenic 50.0%
ACACCCACCAAGACCTTTGT+TGG + tig0006787:5251-5270 Msa1344010:three_prime_UTR 50.0%
CTCTCCAACAAAGGTCTTGG+TGG - tig0006787:5258-5277 None:intergenic 50.0%
CACCAAGACCTTTGTTGGAG+AGG + tig0006787:5256-5275 Msa1344010:three_prime_UTR 50.0%
AGCCTCTCCAACAAAGGTCT+TGG - tig0006787:5261-5280 None:intergenic 50.0%
TGTCGGTCACGAATGGAGCT+CGG - tig0006787:1579-1598 None:intergenic 55.0%
AGGTAAAACTCCCCCGACAG+TGG - tig0006787:2375-2394 None:intergenic 55.0%
GCCATTCCTCGCCTAACAAC+TGG - tig0006787:2776-2795 None:intergenic 55.0%
CGGCAACTTCAACCCAGCTT+TGG - tig0006787:4177-4196 None:intergenic 55.0%
! GCTGGGTTGAAGTTGCCGTT+AGG + tig0006787:4179-4198 Msa1344010:three_prime_UTR 55.0%
ATAGCAGCGCTACAGCACAG+TGG + tig0006787:4360-4379 Msa1344010:intron 55.0%
GCACTGCCATCCACAACTAG+AGG - tig0006787:4789-4808 None:intergenic 55.0%
CGCGAGCTATCAAAAGTCGC+AGG + tig0006787:5073-5092 Msa1344010:three_prime_UTR 55.0%
TCGGTCACGAATGGAGCTCG+GGG - tig0006787:1577-1596 None:intergenic 60.0%
GTCGGTCACGAATGGAGCTC+GGG - tig0006787:1578-1597 None:intergenic 60.0%
GGCCGGACAACCACATCTTC+TGG + tig0006787:2969-2988 Msa1344010:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0006787 gene 786 6199 786 ID=Msa1344010;Name=Msa1344010
tig0006787 mRNA 786 6199 786 ID=Msa1344010-mRNA-1;Parent=Msa1344010;Name=Msa1344010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=604|0.81|0.91|1|0.81|0.83|12|1440|95
tig0006787 exon 786 1211 786 ID=Msa1344010-mRNA-1:exon:4353;Parent=Msa1344010-mRNA-1
tig0006787 exon 2485 2566 2485 ID=Msa1344010-mRNA-1:exon:4354;Parent=Msa1344010-mRNA-1
tig0006787 exon 2777 3094 2777 ID=Msa1344010-mRNA-1:exon:4355;Parent=Msa1344010-mRNA-1
tig0006787 exon 3204 3211 3204 ID=Msa1344010-mRNA-1:exon:4356;Parent=Msa1344010-mRNA-1
tig0006787 exon 3249 3458 3249 ID=Msa1344010-mRNA-1:exon:4357;Parent=Msa1344010-mRNA-1
tig0006787 exon 3706 3826 3706 ID=Msa1344010-mRNA-1:exon:4358;Parent=Msa1344010-mRNA-1
tig0006787 exon 4102 4200 4102 ID=Msa1344010-mRNA-1:exon:4359;Parent=Msa1344010-mRNA-1
tig0006787 exon 4778 4897 4778 ID=Msa1344010-mRNA-1:exon:4360;Parent=Msa1344010-mRNA-1
tig0006787 exon 4993 5169 4993 ID=Msa1344010-mRNA-1:exon:4361;Parent=Msa1344010-mRNA-1
tig0006787 exon 5250 5305 5250 ID=Msa1344010-mRNA-1:exon:4362;Parent=Msa1344010-mRNA-1
tig0006787 exon 5393 5477 5393 ID=Msa1344010-mRNA-1:exon:4363;Parent=Msa1344010-mRNA-1
tig0006787 exon 5570 6199 5570 ID=Msa1344010-mRNA-1:exon:4364;Parent=Msa1344010-mRNA-1
tig0006787 five_prime_UTR 786 1211 786 ID=Msa1344010-mRNA-1:five_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 five_prime_UTR 2485 2566 2485 ID=Msa1344010-mRNA-1:five_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 five_prime_UTR 2777 2872 2777 ID=Msa1344010-mRNA-1:five_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 CDS 2873 3094 2873 ID=Msa1344010-mRNA-1:cds;Parent=Msa1344010-mRNA-1
tig0006787 CDS 3204 3211 3204 ID=Msa1344010-mRNA-1:cds;Parent=Msa1344010-mRNA-1
tig0006787 CDS 3249 3306 3249 ID=Msa1344010-mRNA-1:cds;Parent=Msa1344010-mRNA-1
tig0006787 three_prime_UTR 3307 3458 3307 ID=Msa1344010-mRNA-1:three_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 three_prime_UTR 3706 3826 3706 ID=Msa1344010-mRNA-1:three_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 three_prime_UTR 4102 4200 4102 ID=Msa1344010-mRNA-1:three_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 three_prime_UTR 4778 4897 4778 ID=Msa1344010-mRNA-1:three_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 three_prime_UTR 4993 5169 4993 ID=Msa1344010-mRNA-1:three_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 three_prime_UTR 5250 5305 5250 ID=Msa1344010-mRNA-1:three_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 three_prime_UTR 5393 5477 5393 ID=Msa1344010-mRNA-1:three_prime_utr;Parent=Msa1344010-mRNA-1
tig0006787 three_prime_UTR 5570 6199 5570 ID=Msa1344010-mRNA-1:three_prime_utr;Parent=Msa1344010-mRNA-1
Gene Sequence

>Msa1344010

ATGTATGTCTCTTTTTCTTCTTTTATAACATTCATGGTATTGTATGAAATCGTTAGTATTATTAGTTTGGGAGTTGAGTATGACATGGAGGTGATTGGCCGGACAACCACATCTTCTGGATACTACACAACTTCTGACATAATTTGCAGAGTTCTTGCTCTCCTCATCATGAATCATGATCAGATAGTTGAAATCAGTCCCCCAAACCAAGTATTCAAACAATTGAAAATCGACTATCACAATAATATGGCATGGAGATCAAATTTCTTAAAGAACAAGGCTGGCTGA
Protein sequence

>Msa1344010

MYVSFSSFITFMVLYEIVSIISLGVEYDMEVIGRTTTSSGYYTTSDIICRVLALLIMNHDQIVEISPPNQVFKQLKIDYHNNMAWRSNFLKNKAG*